CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 6473 3925 62.25 10398 2 6923 3765 64.77 10688 3 6624 3753 63.83 10377 4 6163 3642 62.86 9805 5 6470 3563 64.49 10033 6 6321 3384 65.13 9705 7 6691 3662 64.63 10353 8 6452 3427 65.31 9879 9 6411 3301 66.01 9712 10 6714 3443 66.10 10157 11 6699 3609 64.99 10308 12 6840 3431 66.60 10271 13 6788 3317 67.17 10105 14 6773 3416 66.47 10189 15 6854 3344 67.21 10198 16 6849 3350 67.15 10199 17 6896 3424 66.82 10320 18 6910 3342 67.40 10252 19 7011 3352 67.65 10363 20 7089 3391 67.64 10480 21 7111 3409 67.60 10520 22 7151 3430 67.58 10581 23 7046 3290 68.17 10336 24 7126 3244 68.72 10370 25 7024 3404 67.36 10428 26 7133 3364 67.95 10497 27 7171 3307 68.44 10478 28 7130 3464 67.30 10594 29 7073 3341 67.92 10414 30 7031 3324 67.90 10355 31 7197 3400 67.92 10597 32 7282 3276 68.97 10558 33 7179 3328 68.33 10507 34 7325 3371 68.48 10696 35 7134 3339 68.12 10473 36 7031 3211 68.65 10242 37 7110 3352 67.96 10462 38 7092 3289 68.32 10381 39 6814 3209 67.98 10023 40 7109 3281 68.42 10390 41 6954 3131 68.95 10085 42 6900 2979 69.85 9879 43 6880 3099 68.94 9979 44 6726 3301 67.08 10027 45 6655 3121 68.07 9776 46 6767 3049 68.94 9816 47 6606 3082 68.19 9688 48 6507 3028 68.24 9535 49 6435 3098 67.50 9533 50 6386 3059 67.61 9445 51 6274 3003 67.63 9277 52 6269 2964 67.90 9233 53 6235 2947 67.90 9182 54 6127 2929 67.66 9056 55 6193 2866 68.36 9059 56 6141 3007 67.13 9148 57 5995 2887 67.50 8882 58 5860 2762 67.97 8622 59 5807 2841 67.15 8648 60 5561 2751 66.90 8312 61 5591 2745 67.07 8336 62 5354 2718 66.33 8072 63 5382 2500 68.28 7882 64 5248 2677 66.22 7925 65 5231 2589 66.89 7820 66 5187 2435 68.05 7622 67 5159 2530 67.10 7689 68 5048 2498 66.90 7546 69 4880 2580 65.42 7460 70 4901 2401 67.12 7302 71 4641 2309 66.78 6950 72 4518 2378 65.52 6896 73 4492 2403 65.15 6895 74 4416 2333 65.43 6749 75 4287 2316 64.93 6603 76 4305 2218 66.00 6523 77 4039 2156 65.20 6195 78 3675 2084 63.81 5759 79 2979 1646 64.41 4625 80 1483 788 65.30 2271 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1692 17224 8.94 18916 2 1087 17701 5.79 18788 3 902 17700 4.85 18602 4 686 17354 3.80 18040 5 742 16943 4.20 17685 6 769 17148 4.29 17917 7 591 17002 3.36 17593 8 612 17343 3.41 17955 9 577 17029 3.28 17606 10 585 17158 3.30 17743 11 550 17527 3.04 18077 12 564 17387 3.14 17951 13 554 17069 3.14 17623 14 540 17318 3.02 17858 15 564 17966 3.04 18530 16 513 17875 2.79 18388 17 497 17524 2.76 18021 18 526 18104 2.82 18630 19 520 18022 2.80 18542 20 505 17863 2.75 18368 21 481 17948 2.61 18429 22 536 18070 2.88 18606 23 472 18297 2.51 18769 24 539 18416 2.84 18955 25 473 18144 2.54 18617 26 499 18373 2.64 18872 27 478 18562 2.51 19040 28 412 18290 2.20 18702 29 464 18547 2.44 19011 30 409 18149 2.20 18558 31 420 18551 2.21 18971 32 472 18192 2.53 18664 33 443 18695 2.31 19138 34 418 18354 2.23 18772 35 480 18377 2.55 18857 36 452 18414 2.40 18866 37 422 17826 2.31 18248 38 418 17661 2.31 18079 39 423 18424 2.24 18847 40 446 17984 2.42 18430 41 388 17663 2.15 18051 42 429 17771 2.36 18200 43 389 17734 2.15 18123 44 398 17303 2.25 17701 45 414 17387 2.33 17801 46 420 17109 2.40 17529 47 423 17112 2.41 17535 48 371 16930 2.14 17301 49 430 16614 2.52 17044 50 397 16624 2.33 17021 51 398 16492 2.36 16890 52 342 16200 2.07 16542 53 351 16007 2.15 16358 54 383 15971 2.34 16354 55 327 15584 2.06 15911 56 349 15597 2.19 15946 57 344 15373 2.19 15717 58 362 14909 2.37 15271 59 340 14830 2.24 15170 60 342 14851 2.25 15193 61 307 14345 2.10 14652 62 298 14197 2.06 14495 63 330 14076 2.29 14406 64 273 13603 1.97 13876 65 300 13727 2.14 14027 66 290 13521 2.10 13811 67 262 13200 1.95 13462 68 302 12962 2.28 13264 69 310 12703 2.38 13013 70 273 12438 2.15 12711 71 274 12412 2.16 12686 72 280 12270 2.23 12550 73 284 11946 2.32 12230 74 286 11924 2.34 12210 75 266 11536 2.25 11802 76 271 11281 2.35 11552 77 307 10815 2.76 11122 78 234 10215 2.24 10449 79 196 8133 2.35 8329 80 105 4002 2.56 4107 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5816 54543 9.64 60359 2 5452 54533 9.09 59985 3 4844 55312 8.05 60156 4 4503 54667 7.61 59170 5 4447 53543 7.67 57990 6 4574 51492 8.16 56066 7 4175 51896 7.45 56071 8 3954 50994 7.20 54948 9 4327 51793 7.71 56120 10 4064 52373 7.20 56437 11 3968 51533 7.15 55501 12 4063 52140 7.23 56203 13 4138 52782 7.27 56920 14 3832 52589 6.79 56421 15 4092 53771 7.07 57863 16 4041 54029 6.96 58070 17 3985 53855 6.89 57840 18 3910 54488 6.70 58398 19 4045 54730 6.88 58775 20 3849 54193 6.63 58042 21 3957 54864 6.73 58821 22 3838 54260 6.61 58098 23 3712 54778 6.35 58490 24 3731 54868 6.37 58599 25 3754 55028 6.39 58782 26 3614 54596 6.21 58210 27 3706 54744 6.34 58450 28 3506 54694 6.02 58200 29 3521 54707 6.05 58228 30 3441 54553 5.93 57994 31 3553 55479 6.02 59032 32 3288 54740 5.67 58028 33 3295 54293 5.72 57588 34 3318 54932 5.70 58250 35 3180 54439 5.52 57619 36 3149 54717 5.44 57866 37 3130 54520 5.43 57650 38 2873 53599 5.09 56472 39 2974 54479 5.18 57453 40 2920 54526 5.08 57446 41 2783 53527 4.94 56310 42 2758 53104 4.94 55862 43 2708 53143 4.85 55851 44 2607 51946 4.78 54553 45 2556 51342 4.74 53898 46 2493 51600 4.61 54093 47 2406 51082 4.50 53488 48 2397 51073 4.48 53470 49 2199 50934 4.14 53133 50 2175 49147 4.24 51322 51 2086 48571 4.12 50657 52 1966 48912 3.86 50878 53 1905 47239 3.88 49144 54 1911 46896 3.92 48807 55 1829 46755 3.76 48584 56 1702 46128 3.56 47830 57 1774 46004 3.71 47778 58 1605 44723 3.46 46328 59 1537 44611 3.33 46148 60 1534 43596 3.40 45130 61 1401 43013 3.15 44414 62 1445 42399 3.30 43844 63 1423 42196 3.26 43619 64 1396 41677 3.24 43073 65 1293 40677 3.08 41970 66 1289 40026 3.12 41315 67 1233 40149 2.98 41382 68 1239 39718 3.03 40957 69 1161 38603 2.92 39764 70 1184 37853 3.03 39037 71 1213 37431 3.14 38644 72 1198 36837 3.15 38035 73 1098 35957 2.96 37055 74 1108 34940 3.07 36048 75 1108 34521 3.11 35629 76 1072 34006 3.06 35078 77 1010 32162 3.04 33172 78 943 30478 3.00 31421 79 764 24814 2.99 25578 80 348 11608 2.91 11956 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 4288 2824 60.29 7112 2 4270 2462 63.43 6732 3 3907 2206 63.91 6113 4 3236 1984 61.99 5220 5 3110 2013 60.71 5123 6 3123 1940 61.68 5063 7 3211 2166 59.72 5377 8 3030 1794 62.81 4824 9 2950 1742 62.87 4692 10 3144 1792 63.70 4936 11 3155 1733 64.55 4888 12 3058 1734 63.81 4792 13 2975 1628 64.63 4603 14 2917 1601 64.56 4518 15 2872 1561 64.79 4433 16 2854 1552 64.78 4406 17 2725 1503 64.45 4228 18 2711 1425 65.55 4136 19 2669 1456 64.70 4125 20 2521 1435 63.73 3956 21 2553 1368 65.11 3921 22 2486 1258 66.40 3744 23 2428 1353 64.22 3781 24 2374 1292 64.76 3666 25 2356 1202 66.22 3558 26 2247 1232 64.59 3479 27 2171 1169 65.00 3340 28 2320 1189 66.12 3509 29 2197 1134 65.96 3331 30 2148 1102 66.09 3250 31 2125 1130 65.28 3255 32 2008 1010 66.53 3018 33 2067 1093 65.41 3160 34 2033 1047 66.01 3080 35 1992 1000 66.58 2992 36 1931 914 67.87 2845 37 1890 883 68.16 2773 38 1854 940 66.36 2794 39 1845 909 66.99 2754 40 1835 883 67.51 2718 41 1689 852 66.47 2541 42 1704 858 66.51 2562 43 1679 755 68.98 2434 44 1518 785 65.91 2303 45 1559 758 67.29 2317 46 1630 748 68.54 2378 47 1474 731 66.85 2205 48 1437 756 65.53 2193 49 1402 691 66.99 2093 50 1374 695 66.41 2069 51 1391 693 66.75 2084 52 1344 640 67.74 1984 53 1292 638 66.94 1930 54 1276 611 67.62 1887 55 1239 636 66.08 1875 56 1244 580 68.20 1824 57 1242 595 67.61 1837 58 1139 582 66.18 1721 59 1114 543 67.23 1657 60 1108 571 65.99 1679 61 1084 542 66.67 1626 62 1006 556 64.40 1562 63 1030 488 67.85 1518 64 998 464 68.26 1462 65 929 497 65.15 1426 66 884 509 63.46 1393 67 956 425 69.23 1381 68 919 447 67.28 1366 69 797 424 65.27 1221 70 865 477 64.46 1342 71 812 445 64.60 1257 72 798 439 64.51 1237 73 765 411 65.05 1176 74 760 373 67.08 1133 75 716 400 64.16 1116 76 695 381 64.59 1076 77 682 340 66.73 1022 78 632 345 64.69 977 79 567 284 66.63 851 80 367 204 64.27 571 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1413 12377 10.25 13790 2 723 10811 6.27 11534 3 625 10289 5.73 10914 4 388 9637 3.87 10025 5 440 9077 4.62 9517 6 491 8854 5.25 9345 7 343 8618 3.83 8961 8 339 9029 3.62 9368 9 312 8468 3.55 8780 10 274 8303 3.19 8577 11 279 8121 3.32 8400 12 264 8255 3.10 8519 13 278 7842 3.42 8120 14 269 7684 3.38 7953 15 248 7993 3.01 8241 16 249 7790 3.10 8039 17 214 7232 2.87 7446 18 231 7284 3.07 7515 19 173 7064 2.39 7237 20 183 6986 2.55 7169 21 196 6857 2.78 7053 22 175 6661 2.56 6836 23 174 6577 2.58 6751 24 160 6507 2.40 6667 25 176 6417 2.67 6593 26 173 6165 2.73 6338 27 148 6244 2.32 6392 28 166 6009 2.69 6175 29 148 6115 2.36 6263 30 133 5769 2.25 5902 31 113 5700 1.94 5813 32 132 5599 2.30 5731 33 118 5602 2.06 5720 34 111 5365 2.03 5476 35 119 5225 2.23 5344 36 93 5116 1.79 5209 37 111 4947 2.19 5058 38 107 4962 2.11 5069 39 90 5001 1.77 5091 40 91 4803 1.86 4894 41 87 4693 1.82 4780 42 70 4556 1.51 4626 43 87 4441 1.92 4528 44 73 4372 1.64 4445 45 73 4345 1.65 4418 46 87 4001 2.13 4088 47 79 4069 1.90 4148 48 76 3887 1.92 3963 49 72 3853 1.83 3925 50 66 3718 1.74 3784 51 62 3750 1.63 3812 52 71 3662 1.90 3733 53 62 3453 1.76 3515 54 67 3414 1.92 3481 55 62 3309 1.84 3371 56 74 3158 2.29 3232 57 58 3313 1.72 3371 58 61 3106 1.93 3167 59 53 2972 1.75 3025 60 58 2953 1.93 3011 61 54 3061 1.73 3115 62 58 2712 2.09 2770 63 46 2734 1.65 2780 64 57 2731 2.04 2788 65 43 2571 1.64 2614 66 50 2525 1.94 2575 67 45 2476 1.79 2521 68 50 2452 2.00 2502 69 40 2450 1.61 2490 70 40 2302 1.71 2342 71 38 2245 1.66 2283 72 43 2182 1.93 2225 73 41 2133 1.89 2174 74 50 2063 2.37 2113 75 43 2098 2.01 2141 76 33 1945 1.67 1978 77 32 1799 1.75 1831 78 32 1742 1.80 1774 79 38 1567 2.37 1605 80 24 1010 2.32 1034 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3867 40856 8.65 44723 2 2950 34022 7.98 36972 3 2068 32078 6.06 34146 4 1712 30464 5.32 32176 5 1663 29214 5.39 30877 6 1917 27331 6.55 29248 7 1376 26700 4.90 28076 8 1375 26224 4.98 27599 9 1408 26241 5.09 27649 10 1315 25778 4.85 27093 11 1212 24418 4.73 25630 12 1055 24204 4.18 25259 13 1049 24352 4.13 25401 14 994 24006 3.98 25000 15 1007 23615 4.09 24622 16 989 23647 4.01 24636 17 949 22968 3.97 23917 18 946 22416 4.05 23362 19 824 22325 3.56 23149 20 815 21533 3.65 22348 21 771 21237 3.50 22008 22 804 20859 3.71 21663 23 704 20491 3.32 21195 24 723 20143 3.46 20866 25 700 20053 3.37 20753 26 640 19451 3.19 20091 27 655 19102 3.32 19757 28 578 18943 2.96 19521 29 556 18756 2.88 19312 30 567 18063 3.04 18630 31 581 18253 3.08 18834 32 517 17299 2.90 17816 33 507 16864 2.92 17371 34 517 16887 2.97 17404 35 503 16516 2.96 17019 36 453 16102 2.74 16555 37 457 15928 2.79 16385 38 433 15647 2.69 16080 39 375 15118 2.42 15493 40 412 15125 2.65 15537 41 364 14702 2.42 15066 42 361 14223 2.48 14584 43 390 14234 2.67 14624 44 363 13601 2.60 13964 45 355 13113 2.64 13468 46 326 13313 2.39 13639 47 322 12734 2.47 13056 48 341 12912 2.57 13253 49 307 12558 2.39 12865 50 299 12001 2.43 12300 51 298 11608 2.50 11906 52 274 11730 2.28 12004 53 258 11127 2.27 11385 54 264 10849 2.38 11113 55 268 10566 2.47 10834 56 243 10408 2.28 10651 57 289 10236 2.75 10525 58 262 9812 2.60 10074 59 233 9815 2.32 10048 60 236 9696 2.38 9932 61 266 9169 2.82 9435 62 223 9062 2.40 9285 63 227 8656 2.56 8883 64 206 8803 2.29 9009 65 212 8396 2.46 8608 66 212 8111 2.55 8323 67 192 7997 2.34 8189 68 236 8083 2.84 8319 69 191 7733 2.41 7924 70 204 7510 2.64 7714 71 205 7192 2.77 7397 72 223 7066 3.06 7289 73 189 6908 2.66 7097 74 196 6736 2.83 6932 75 165 6490 2.48 6655 76 185 6404 2.81 6589 77 172 6189 2.70 6361 78 163 5712 2.77 5875 79 125 5171 2.36 5296 80 103 3592 2.79 3695