zr2096_8_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 479306 lines in total Total number of methylation call strings processed: 958612 Final Cytosine Methylation Report ================================= Total number of C's analysed: 8111311 Total methylated C's in CpG context: 644017 Total methylated C's in CHG context: 48503 Total methylated C's in CHH context: 271288 Total C to T conversions in CpG context: 323510 Total C to T conversions in CHG context: 1689076 Total C to T conversions in CHH context: 5134917 C methylated in CpG context: 66.6% C methylated in CHG context: 2.8% C methylated in CHH context: 5.0%