Bismark Processing Report

zr2096_9_s1_R1_val_1.fq.gz and zr2096_9_s1_R2_val_2.fq.gz

Data processed at 13:52 on 2018-04-27


Sequence pairs analysed in total 1000000
Paired-end alignments with a unique best hit 506536
Pairs without alignments under any condition 287217
Pairs that did not map uniquely 206247
Genomic sequence context not extractable (edges of chromosomes) 0

Cytosine Methylation

Total C's analysed 14066922
Methylated C's in CpG context 1515913
Methylated C's in CHG context 87529
Methylated C's in CHH context 387857
Methylated C's in Unknown context 39698
Unmethylated C's in CpG context 453186
Unmethylated C's in CHG context 3021569
Unmethylated C's in CHH context 8600868
Unmethylated C's in Unknown context 175565
Percentage methylation (CpG context) 77.0%
Percentage methylation (CHG context) 2.8%
Percentage methylation (CHH context) 4.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 135246 original top strand
CTOT 118059 complementary to original top strand
CTOB 117830 complementary to original bottom strand
OB 135401 original bottom strand