CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 9816 4029 70.90 13845 2 10629 3793 73.70 14422 3 9635 3837 71.52 13472 4 9137 3347 73.19 12484 5 9595 3396 73.86 12991 6 9478 3175 74.91 12653 7 9975 3669 73.11 13644 8 9504 3196 74.83 12700 9 9640 3205 75.05 12845 10 10173 3264 75.71 13437 11 10211 3234 75.95 13445 12 10318 3084 76.99 13402 13 10374 3158 76.66 13532 14 10134 3186 76.08 13320 15 10295 3171 76.45 13466 16 10461 3163 76.78 13624 17 10529 3192 76.74 13721 18 10574 3074 77.48 13648 19 10693 3173 77.12 13866 20 10791 3196 77.15 13987 21 10910 3106 77.84 14016 22 10760 3111 77.57 13871 23 10753 3035 77.99 13788 24 10851 3108 77.73 13959 25 10859 3069 77.97 13928 26 10923 3082 77.99 14005 27 10474 3129 77.00 13603 28 10976 3113 77.90 14089 29 10803 3039 78.05 13842 30 10966 2986 78.60 13952 31 10980 3039 78.32 14019 32 11106 2993 78.77 14099 33 10949 2944 78.81 13893 34 11091 3060 78.38 14151 35 10876 3015 78.30 13891 36 10893 3005 78.38 13898 37 10731 3056 77.83 13787 38 10742 2913 78.67 13655 39 10742 2932 78.56 13674 40 10921 2964 78.65 13885 41 10634 2886 78.65 13520 42 10505 2846 78.68 13351 43 10597 2820 78.98 13417 44 10515 2818 78.86 13333 45 10365 2771 78.91 13136 46 10397 2937 77.97 13334 47 10060 2815 78.14 12875 48 9937 2831 77.83 12768 49 9920 2838 77.76 12758 50 9934 2649 78.95 12583 51 9579 2691 78.07 12270 52 9624 2778 77.60 12402 53 9301 2666 77.72 11967 54 9518 2711 77.83 12229 55 9327 2734 77.33 12061 56 9095 2639 77.51 11734 57 9278 2715 77.36 11993 58 8926 2676 76.94 11602 59 8826 2555 77.55 11381 60 8746 2542 77.48 11288 61 8459 2592 76.55 11051 62 8318 2455 77.21 10773 63 8243 2480 76.87 10723 64 8005 2390 77.01 10395 65 7816 2426 76.31 10242 66 7754 2268 77.37 10022 67 7605 2343 76.45 9948 68 7506 2404 75.74 9910 69 7459 2218 77.08 9677 70 7124 2312 75.50 9436 71 7278 2349 75.60 9627 72 7012 2232 75.85 9244 73 6989 2109 76.82 9098 74 6570 2134 75.48 8704 75 6436 2131 75.13 8567 76 6143 2088 74.63 8231 77 6067 2023 74.99 8090 78 5440 1877 74.35 7317 79 4297 1488 74.28 5785 80 1973 668 74.71 2641 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2152 19941 9.74 22093 2 1196 20119 5.61 21315 3 1034 20233 4.86 21267 4 802 19797 3.89 20599 5 913 19968 4.37 20881 6 952 19518 4.65 20470 7 774 19831 3.76 20605 8 767 20394 3.62 21161 9 703 20336 3.34 21039 10 722 20073 3.47 20795 11 707 20008 3.41 20715 12 668 20315 3.18 20983 13 696 19811 3.39 20507 14 627 19924 3.05 20551 15 649 20854 3.02 21503 16 634 21032 2.93 21666 17 621 20584 2.93 21205 18 634 21265 2.90 21899 19 589 21114 2.71 21703 20 598 20873 2.79 21471 21 599 21494 2.71 22093 22 655 21144 3.00 21799 23 561 21084 2.59 21645 24 591 21257 2.71 21848 25 536 21396 2.44 21932 26 585 21195 2.69 21780 27 570 21780 2.55 22350 28 528 21754 2.37 22282 29 566 22005 2.51 22571 30 535 21433 2.44 21968 31 517 21445 2.35 21962 32 588 21576 2.65 22164 33 579 21887 2.58 22466 34 540 21462 2.45 22002 35 518 21392 2.36 21910 36 542 21548 2.45 22090 37 551 21240 2.53 21791 38 547 21111 2.53 21658 39 460 21191 2.12 21651 40 474 20834 2.22 21308 41 475 20762 2.24 21237 42 470 21180 2.17 21650 43 458 20713 2.16 21171 44 503 20323 2.42 20826 45 482 20632 2.28 21114 46 485 20309 2.33 20794 47 498 20008 2.43 20506 48 479 19905 2.35 20384 49 427 19451 2.15 19878 50 427 19198 2.18 19625 51 456 19393 2.30 19849 52 433 18971 2.23 19404 53 419 18718 2.19 19137 54 434 18781 2.26 19215 55 445 18366 2.37 18811 56 428 18069 2.31 18497 57 442 17989 2.40 18431 58 412 17800 2.26 18212 59 377 17290 2.13 17667 60 412 17437 2.31 17849 61 411 16615 2.41 17026 62 426 16709 2.49 17135 63 392 16852 2.27 17244 64 404 16031 2.46 16435 65 380 15688 2.36 16068 66 370 15901 2.27 16271 67 370 15450 2.34 15820 68 346 14925 2.27 15271 69 385 14804 2.53 15189 70 374 14864 2.45 15238 71 388 14373 2.63 14761 72 371 14305 2.53 14676 73 341 13807 2.41 14148 74 348 13599 2.50 13947 75 342 13537 2.46 13879 76 315 12765 2.41 13080 77 322 12140 2.58 12462 78 329 11372 2.81 11701 79 272 9072 2.91 9344 80 108 4113 2.56 4221 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 5647 60707 8.51 66354 2 5430 60408 8.25 65838 3 4664 60736 7.13 65400 4 4021 60243 6.26 64264 5 4211 59510 6.61 63721 6 4239 56389 6.99 60628 7 3656 57000 6.03 60656 8 3629 55999 6.09 59628 9 3730 56920 6.15 60650 10 3644 57783 5.93 61427 11 3525 56490 5.87 60015 12 3647 56517 6.06 60164 13 3582 57604 5.85 61186 14 3507 57850 5.72 61357 15 3509 59134 5.60 62643 16 3489 59658 5.53 63147 17 3437 59447 5.47 62884 18 3412 60033 5.38 63445 19 3369 60604 5.27 63973 20 3310 59974 5.23 63284 21 3417 59992 5.39 63409 22 3241 60327 5.10 63568 23 3177 60342 5.00 63519 24 3135 60811 4.90 63946 25 3259 61298 5.05 64557 26 3090 61292 4.80 64382 27 3089 61108 4.81 64197 28 3029 61777 4.67 64806 29 2901 60513 4.57 63414 30 2910 60909 4.56 63819 31 2794 62178 4.30 64972 32 2777 60422 4.39 63199 33 2698 60389 4.28 63087 34 2562 60630 4.05 63192 35 2623 60372 4.16 62995 36 2524 60205 4.02 62729 37 2543 60560 4.03 63103 38 2416 59825 3.88 62241 39 2426 59631 3.91 62057 40 2344 59784 3.77 62128 41 2250 59272 3.66 61522 42 2216 58447 3.65 60663 43 2168 58673 3.56 60841 44 2106 57594 3.53 59700 45 2005 57230 3.38 59235 46 1942 57569 3.26 59511 47 1909 56440 3.27 58349 48 1894 56329 3.25 58223 49 1862 56455 3.19 58317 50 1821 54621 3.23 56442 51 1831 53870 3.29 55701 52 1671 54159 2.99 55830 53 1741 52952 3.18 54693 54 1651 51941 3.08 53592 55 1592 51803 2.98 53395 56 1549 51328 2.93 52877 57 1489 50700 2.85 52189 58 1458 49832 2.84 51290 59 1496 49500 2.93 50996 60 1418 48556 2.84 49974 61 1379 47438 2.82 48817 62 1384 47129 2.85 48513 63 1417 46613 2.95 48030 64 1331 46071 2.81 47402 65 1323 45002 2.86 46325 66 1241 44399 2.72 45640 67 1240 43978 2.74 45218 68 1192 43848 2.65 45040 69 1237 43135 2.79 44372 70 1223 42188 2.82 43411 71 1140 41394 2.68 42534 72 1203 40788 2.86 41991 73 1161 39571 2.85 40732 74 1114 38481 2.81 39595 75 1101 38086 2.81 39187 76 1070 36885 2.82 37955 77 1087 35386 2.98 36473 78 958 32503 2.86 33461 79 730 26204 2.71 26934 80 342 11386 2.92 11728 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6354 3060 67.50 9414 2 5970 2572 69.89 8542 3 5547 2279 70.88 7826 4 4689 2131 68.75 6820 5 4585 2001 69.62 6586 6 4660 1705 73.21 6365 7 4671 2036 69.64 6707 8 4372 1838 70.40 6210 9 4436 1656 72.82 6092 10 4499 1646 73.21 6145 11 4495 1688 72.70 6183 12 4415 1586 73.57 6001 13 4267 1515 73.80 5782 14 4142 1557 72.68 5699 15 4270 1471 74.38 5741 16 4165 1418 74.60 5583 17 4008 1408 74.00 5416 18 3847 1324 74.40 5171 19 3762 1364 73.39 5126 20 3793 1293 74.58 5086 21 3712 1307 73.96 5019 22 3666 1215 75.11 4881 23 3567 1186 75.05 4753 24 3508 1090 76.29 4598 25 3406 1258 73.03 4664 26 3376 1112 75.22 4488 27 3200 1109 74.26 4309 28 3321 1071 75.61 4392 29 3232 1036 75.73 4268 30 3053 925 76.75 3978 31 3064 978 75.80 4042 32 3030 931 76.50 3961 33 3021 938 76.31 3959 34 2907 929 75.78 3836 35 2863 851 77.09 3714 36 2816 822 77.41 3638 37 2681 772 77.64 3453 38 2672 795 77.07 3467 39 2702 797 77.22 3499 40 2616 756 77.58 3372 41 2442 750 76.50 3192 42 2335 727 76.26 3062 43 2307 714 76.37 3021 44 2268 673 77.12 2941 45 2301 639 78.27 2940 46 2237 589 79.16 2826 47 2224 594 78.92 2818 48 2079 617 77.11 2696 49 2057 638 76.33 2695 50 1965 607 76.40 2572 51 1937 554 77.76 2491 52 1833 515 78.07 2348 53 1797 567 76.02 2364 54 1782 545 76.58 2327 55 1784 523 77.33 2307 56 1714 515 76.90 2229 57 1771 515 77.47 2286 58 1594 473 77.12 2067 59 1604 476 77.12 2080 60 1463 446 76.64 1909 61 1472 435 77.19 1907 62 1383 414 76.96 1797 63 1376 385 78.14 1761 64 1302 418 75.70 1720 65 1274 411 75.61 1685 66 1275 394 76.39 1669 67 1245 357 77.72 1602 68 1186 393 75.11 1579 69 1204 324 78.80 1528 70 1086 369 74.64 1455 71 1178 355 76.84 1533 72 1020 325 75.84 1345 73 1021 332 75.46 1353 74 987 310 76.10 1297 75 928 309 75.02 1237 76 932 303 75.47 1235 77 861 306 73.78 1167 78 766 269 74.01 1035 79 668 259 72.06 927 80 497 172 74.29 669 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1605 14570 9.92 16175 2 744 12451 5.64 13195 3 724 11939 5.72 12663 4 450 11262 3.84 11712 5 544 10440 4.95 10984 6 578 10000 5.46 10578 7 384 9985 3.70 10369 8 424 10149 4.01 10573 9 377 9537 3.80 9914 10 350 9302 3.63 9652 11 348 9206 3.64 9554 12 299 9262 3.13 9561 13 301 8839 3.29 9140 14 303 8589 3.41 8892 15 313 8735 3.46 9048 16 268 8669 3.00 8937 17 274 8401 3.16 8675 18 263 8205 3.11 8468 19 260 7892 3.19 8152 20 225 7784 2.81 8009 21 232 7923 2.84 8155 22 246 7431 3.20 7677 23 227 7326 3.01 7553 24 185 7383 2.44 7568 25 208 6969 2.90 7177 26 200 6931 2.80 7131 27 183 6981 2.55 7164 28 159 6735 2.31 6894 29 182 7006 2.53 7188 30 165 6538 2.46 6703 31 165 6297 2.55 6462 32 146 6454 2.21 6600 33 147 6258 2.30 6405 34 137 5908 2.27 6045 35 166 5869 2.75 6035 36 128 5740 2.18 5868 37 127 5651 2.20 5778 38 128 5429 2.30 5557 39 107 5449 1.93 5556 40 108 5084 2.08 5192 41 136 5260 2.52 5396 42 107 5159 2.03 5266 43 105 4911 2.09 5016 44 96 4735 1.99 4831 45 102 4732 2.11 4834 46 109 4554 2.34 4663 47 95 4514 2.06 4609 48 66 4304 1.51 4370 49 119 4170 2.77 4289 50 103 4041 2.49 4144 51 89 3946 2.21 4035 52 75 3900 1.89 3975 53 86 3652 2.30 3738 54 85 3725 2.23 3810 55 78 3588 2.13 3666 56 81 3466 2.28 3547 57 86 3528 2.38 3614 58 68 3310 2.01 3378 59 72 3221 2.19 3293 60 57 3174 1.76 3231 61 56 3018 1.82 3074 62 51 2997 1.67 3048 63 58 2903 1.96 2961 64 69 2757 2.44 2826 65 66 2643 2.44 2709 66 68 2767 2.40 2835 67 53 2551 2.04 2604 68 59 2507 2.30 2566 69 42 2444 1.69 2486 70 47 2360 1.95 2407 71 49 2259 2.12 2308 72 43 2259 1.87 2302 73 47 2172 2.12 2219 74 48 2103 2.23 2151 75 42 2051 2.01 2093 76 37 1956 1.86 1993 77 33 1863 1.74 1896 78 35 1810 1.90 1845 79 32 1512 2.07 1544 80 23 1075 2.09 1098 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 3913 46550 7.75 50463 2 2940 37925 7.19 40865 3 2095 35974 5.50 38069 4 1802 33879 5.05 35681 5 1795 32523 5.23 34318 6 1929 29731 6.09 31660 7 1442 29506 4.66 30948 8 1370 28336 4.61 29706 9 1423 28440 4.77 29863 10 1368 28043 4.65 29411 11 1226 26784 4.38 28010 12 1222 26458 4.41 27680 13 1129 26621 4.07 27750 14 1094 25907 4.05 27001 15 1061 25590 3.98 26651 16 1013 25645 3.80 26658 17 909 24580 3.57 25489 18 883 24442 3.49 25325 19 881 23803 3.57 24684 20 900 23672 3.66 24572 21 810 23164 3.38 23974 22 777 22619 3.32 23396 23 771 22318 3.34 23089 24 688 21842 3.05 22530 25 749 21673 3.34 22422 26 680 20985 3.14 21665 27 620 20538 2.93 21158 28 616 20653 2.90 21269 29 605 19810 2.96 20415 30 520 19503 2.60 20023 31 565 19461 2.82 20026 32 485 18451 2.56 18936 33 506 18146 2.71 18652 34 475 18185 2.55 18660 35 496 17572 2.75 18068 36 468 17608 2.59 18076 37 429 17173 2.44 17602 38 382 16476 2.27 16858 39 414 16118 2.50 16532 40 404 15939 2.47 16343 41 362 15496 2.28 15858 42 367 15085 2.38 15452 43 365 14866 2.40 15231 44 329 14201 2.26 14530 45 365 14057 2.53 14422 46 333 13948 2.33 14281 47 299 13608 2.15 13907 48 323 13480 2.34 13803 49 296 13333 2.17 13629 50 292 12416 2.30 12708 51 255 12231 2.04 12486 52 307 12112 2.47 12419 53 270 11263 2.34 11533 54 249 11049 2.20 11298 55 239 10981 2.13 11220 56 216 10417 2.03 10633 57 241 10361 2.27 10602 58 211 10029 2.06 10240 59 233 9841 2.31 10074 60 213 9526 2.19 9739 61 215 9152 2.30 9367 62 211 9027 2.28 9238 63 188 8736 2.11 8924 64 198 8734 2.22 8932 65 172 8499 1.98 8671 66 190 8221 2.26 8411 67 195 7935 2.40 8130 68 178 7941 2.19 8119 69 181 7725 2.29 7906 70 158 7417 2.09 7575 71 157 7120 2.16 7277 72 157 7037 2.18 7194 73 164 6797 2.36 6961 74 149 6432 2.26 6581 75 156 6322 2.41 6478 76 145 6038 2.35 6183 77 123 5857 2.06 5980 78 118 5392 2.14 5510 79 114 4878 2.28 4992 80 85 3341 2.48 3426