zr2096_9_s1_R1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 503808 lines in total Total number of methylation call strings processed: 1007616 Final Cytosine Methylation Report ================================= Total number of C's analysed: 9143050 Total methylated C's in CpG context: 965361 Total methylated C's in CHG context: 58589 Total methylated C's in CHH context: 244429 Total C to T conversions in CpG context: 299089 Total C to T conversions in CHG context: 1948911 Total C to T conversions in CHH context: 5626671 C methylated in CpG context: 76.3% C methylated in CHG context: 2.9% C methylated in CHH context: 4.2%