sample Nreads passed passed.w.trim passed.total sample Nreads passed passed.w.trim passed.total 1HL_10A_1 3186565 3186565 0 3186565 1HL_11A_1 3568503 3568503 0 3568503 1HL_12A_1 2524813 2524813 0 2524813 1HL_13A_1 2676425 2676425 0 2676425 1HL_14A_1 2015611 2015611 0 2015611 1HL_15A_1 2196324 2196324 0 2196324 1HL_16A_1 2333158 2333158 0 2333158 1HL_17A_1 3653761 3653761 0 3653761 1HL_19A_1 3617984 3617984 0 3617984 1HL_1A_1 2260430 2260430 0 2260430 1HL_20A_1 2908938 2908938 0 2908938 1HL_21A_1 2591845 2591845 0 2591845 1HL_22A_1 2074229 2074229 0 2074229 1HL_23A_1 3609794 3609794 0 3609794 1HL_24A_1 2721808 2721808 0 2721808 1HL_25A_1 2957874 2957874 0 2957874 1HL_26A_1 3142369 3142369 0 3142369 1HL_27A_1 3199649 3199649 0 3199649 1HL_29A_1 3071205 3071205 0 3071205 1HL_2A_1 2758150 2758150 0 2758150 1HL_31A_1 2453753 2453753 0 2453753 1HL_33A_1 2708943 2708943 0 2708943 1HL_34A_1 2899019 2899019 0 2899019 1HL_35A_1 2630313 2630313 0 2630313 1HL_3A_1 2211401 2211401 0 2211401 1HL_4A_1 2571031 2571031 0 2571031 1HL_5A_1 1980666 1980666 0 1980666 1HL_6A_1 2070051 2070051 0 2070051 1HL_7A_1 2793544 2793544 0 2793544 1HL_8A_1 2544013 2544013 0 2544013 1HL_9A_1 2832945 2832945 0 2832945 1NF_10A_1 2149301 2149301 0 2149301 1NF_11A_1 2266647 2266647 0 2266647 1NF_12A_1 2179923 2179923 0 2179923 1NF_14A_1 2719198 2719198 0 2719198 1NF_15A_1 2554324 2554324 0 2554324 1NF_16A_1 2682948 2682948 0 2682948 1NF_17A_1 3119328 3119328 0 3119328 1NF_18A_1 1750070 1750070 0 1750070 1NF_19A_1 2036640 2036640 0 2036640 1NF_1A_1 1355760 1355760 0 1355760 1NF_20A_1 2457026 2457026 0 2457026 1NF_21A_1 3046937 3046937 0 3046937 1NF_22A_1 2895176 2895176 0 2895176 1NF_23A_1 3206742 3206742 0 3206742 1NF_24A_1 3038626 3038626 0 3038626 1NF_25A_1 2203229 2203229 0 2203229 1NF_26A_1 2934794 2934794 0 2934794 1NF_27A_1 2272652 2272652 0 2272652 1NF_28A_1 2344763 2344763 0 2344763 1NF_2A_1 3452931 3452931 0 3452931 1NF_30A_1 2701047 2701047 0 2701047 1NF_31A_1 3561574 3561574 0 3561574 1NF_32A_1 3477986 3477986 0 3477986 1NF_33A_1 2602951 2602951 0 2602951 1NF_5A_1 2765984 2765984 0 2765984 1NF_6A_1 2423888 2423888 0 2423888 1NF_7A_1 2590507 2590507 0 2590507 1NF_8A_1 2772580 2772580 0 2772580 1NF_9A_1 3380498 3380498 0 3380498 1SN_10A_1 2558667 2558667 0 2558667 1SN_11A_1 2583992 2583992 0 2583992 1SN_12A_1 3423902 3423902 0 3423902 1SN_13A_1 2956991 2956991 0 2956991 1SN_14A_1 3544290 3544290 0 3544290 1SN_15A_1 2506325 2506325 0 2506325 1SN_16A_1 2616966 2616966 0 2616966 1SN_17A_1 2983401 2983401 0 2983401 1SN_18A_1 3248512 3248512 0 3248512 1SN_19A_1 3036463 3036463 0 3036463 1SN_1A_1 3040537 3040537 0 3040537 1SN_20A_1 2155177 2155177 0 2155177 1SN_21A_1 3540618 3540618 0 3540618 1SN_22A_1 3060365 3060365 0 3060365 1SN_24A_1 1885265 1885265 0 1885265 1SN_25A_1 3037089 3037089 0 3037089 1SN_26A_1 2758873 2758873 0 2758873 1SN_27A_1 2607809 2607809 0 2607809 1SN_28A_1 2841587 2841587 0 2841587 1SN_29A_1 2257274 2257274 0 2257274 1SN_2A_1 3080107 3080107 0 3080107 1SN_31A_1 3353715 3353715 0 3353715 1SN_32A_1 2552635 2552635 0 2552635 1SN_3A_1 2442489 2442489 0 2442489 1SN_4A_1 3294871 3294871 0 3294871 1SN_5A_1 3000852 3000852 0 3000852 1SN_6A_1 3354310 3354310 0 3354310 1SN_7A_1 2964594 2964594 0 2964594 1SN_8A_1 3269810 3269810 0 3269810 1SN_9A_1 3177205 3177205 0 3177205 Nreads = total number of reads for a sample passed = retained reads that passed quality filtering at full length passed.w.trim= retained reads that were trimmed due to detection of adapters passed.total = total kept reads of sufficient length note: you can set the option in params file to include trimmed reads of xx length.