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SUMMARY
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- Sat Dec 09 16:41:23 2017
- [HM2JYBBXX_Geoduck-1_supernova]  
- commit hash = b5305e091
- assembly checksum = 1,700,885,556,816,123,147
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INPUT
- 1200.03 M  = READS          = number of reads; ideal 800M-1200M for human
-  139.50  b = MEAN READ LEN  = mean read length after trimming; ideal 140
-   51.73  x = EFFECTIVE COV  = effective read coverage; ideal ~42 for nominal 56x cov
-   67.13  % = READ TWO Q30   = fraction of Q30 bases in read 2; ideal 75-85
-  388.00  b = MEDIAN INSERT  = median insert size; ideal 0.35-0.40
-   81.81  % = PROPER PAIRS   = fraction of proper read pairs; ideal >= 75
-   19.90 Kb = MOLECULE LEN   = weighted mean molecule size; ideal 50-100
-  165.00  b = HETDIST        = mean distance between heterozygous SNPs
-    5.98  % = UNBAR          = fraction of reads that are not barcoded
-  998.00    = BARCODE N50    = N50 reads per barcode
-   26.99  % = DUPS           = fraction of reads that are duplicates
-   36.57  % = PHASED         = nonduplicate and phased reads; ideal 45-50
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OUTPUT
-   17.76 K  = LONG SCAFFOLDS = number of scaffolds >= 10 kb
-    3.45 Kb = EDGE N50       = N50 edge size
-   15.28 Kb = CONTIG N50     = N50 contig size
-   64.35 Kb = PHASEBLOCK N50 = N50 phase block size
-   61.19 Kb = SCAFFOLD N50   = N50 scaffold size
-  729.47 Mb = ASSEMBLY SIZE  = assembly size (only scaffolds >= 10 kb)
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