; C:\Illumina\HiSeq Control Software\Configs\HiSeqControlSoftware.Hardware.cfg ; Scanner.cfg ; Devices\Misc\FPGA.cfg ; #include (InstrumentType).cfg C:\Illumina\HiSeq Control Software\Configs\Instruments\HiSeq4000.cfg ; ..\Instruments\Storm_RedLQ_NoPEPriming.cfg ; ..\Other\StormCommon.cfg ; ..\Other\BrunoPilotCommon.cfg ; ..\Other\BrunoCommon.cfg ; ..\Devices\Lasers\Laser1_532_Smd6000_APC.cfg ; ..\Devices\Motors\TiltMotor_FPGATilt.cfg ; ..\Devices\Motors\XMotor_MDrive_5mm.cfg ; ..\Devices\Motors\YMotor_VixServoIH_10nm.cfg ; ..\Devices\Motors\ZMotor_FPGAControlledPIMotor_250um.cfg ; ..\Other\ChemistryCommon.cfg ; ..\Devices\Chemistry\BrunoPilotChemPortNames.cfg ; ..\Devices\StatusLights\BrunoLEDBars.cfg ; ..\Devices\Misc\LaserShutter.cfg ; ..\Devices\Misc\FocusTrackingLaser.cfg ; ..\Devices\Misc\YStageLock.cfg ; ..\Devices\Misc\PassiveDoor.cfg ; ..\Devices\Lasers\Laser2_660_Smd6000_APC.cfg ; ..\Devices\Filters\ExcitationFilter8Position.cfg ; ..\Devices\Chemistry\PEPriming.cfg ; ..\Devices\Motors\YMotor_CopleyServo.cfg ; C:\Include_Override.cfg ; H:\Archimedes_Flash\Override.cfg [_fileinfo] overrideversion = HiSeq4000_4.0 01/08/2015 2:55 PM ; Override.cfg [_notes] instrumenttypedescription = HiSeq4000: CopleyServo 518 camera ; HiSeq4000.cfg [alldevicesensormonitor] active = true ; ChemistryCommon.cfg [analytical channel reflective] emissionposition = Open ; HiSeq4000.cfg excitationposition = AutoFocusPosition ; HiSeq4000.cfg laserpath = 2 ; HiSeq4000.cfg sensorpath = 1 ; HiSeq4000.cfg [antisiphonshutoffvalve] ; ChemistryCommon.cfg [arm9boarddiagserialport] ; ChemistryCommon.cfg [arm9boardserialport] ; ChemistryCommon.cfg [arm9faultmonitor] bubble = BubbleSensorMonitor ; ChemistryCommon.cfg door = DoorSensorMonitor ; ChemistryCommon.cfg enablearm9sensorwarningswhenidle = true ; ChemistryCommon.cfg flow = FlowSensorMonitor ; ChemistryCommon.cfg liquidlevel = LiquidLevelSensorMonitor ; ChemistryCommon.cfg powersupply = PowerSensorMonitor ; ChemistryCommon.cfg rack = RackSensorMonitor ; ChemistryCommon.cfg sipper = SipperSensorMonitor ; ChemistryCommon.cfg solenoid = SolenoidSensorMonitor ; ChemistryCommon.cfg statusregiser = AllDeviceSensorMonitor ; ChemistryCommon.cfg temp = TemperatureSensorMonitor ; ChemistryCommon.cfg vacuum = VacuumSensorMonitor ; ChemistryCommon.cfg [arm9peprimingboardserialport] cosmeticname = ARM9PEPort ; PEPriming.cfg simulated = false ; Override.cfg [ats] applicationtype = Sequencing ; BrunoCommon.cfg [autofocus_scan] autofocusvelocity = 0.42 ; Scanner.cfg autofocusvelocity_515 = 0.612 ; Scanner.cfg autofocusvelocity_518 = 0.1 ; Scanner.cfg beadimagecvcutoff = 0.75 ; Scanner.cfg cancelcommandafterimaging = false ; Scanner.cfg lograwfocusdata = true ; Scanner.cfg sparsemap = false ; Scanner.cfg waitzcommtimeoutms = 10000 ; Scanner.cfg [autotilt_autocenter] autocenterbclaser2power = 50 ; HiSeq4000.cfg autocenterfocustype = ReflectiveLaneEdge ; BrunoCommon.cfg autofocusalgorithm = 3 ; BrunoCommon.cfg autofocuslaser1power = 999 ; HiSeq4000.cfg autofocuslaser2power = 110 ; HiSeq4000.cfg autofocuswindowsize = 512 ; Scanner.cfg autotiltexpectedfocus = -0.12 ; HiSeq4000.cfg autotiltfocusdelta = 0.11 ; BrunoCommon.cfg autotiltlaser1power = 999 ; HiSeq4000.cfg autotiltlaser2power = 150 ; Override.cfg autotiltpattern = FourPointCross ; Scanner.cfg avgbrighttminimumintesitythreshold = 800 ; HiSeq4000.cfg dualsurfaceautocenter = true ; HiSeq4000.cfg enableautocenter = true ; Scanner.cfg enableautotilt = true ; Scanner.cfg fiducialscanvelocity = 1.5 ; Scanner.cfg laser1power = 1000 ; Override.cfg laser2power = 1200 ; Override.cfg laserchangepercentage = 100 ; BrunoCommon.cfg logfocuspoints = false ; Scanner.cfg maxfocuserrornormalscan = 0.15 ; Scanner.cfg maxnumacretries = 4 ; Override.cfg maxtravelrangeforfocussearchmm = 0.4 ; Scanner.cfg minautocentersignal = 30 ; HiSeq4000.cfg minautocentersignaltonoise = 1.5 ; HiSeq4000.cfg minimumfocusbrightness = 800 ; HiSeq4000.cfg movetiltstoetfposition = true ; BrunoCommon.cfg normalfocusdelta = 0.11 ; BrunoCommon.cfg orthogonalitymaxshear = 0.01 ; Scanner.cfg orthogonalitymaxxscaling = 0.01 ; Scanner.cfg orthogonalitymaxyscaling = 0.01 ; Scanner.cfg performtiltcheckandadjust = true ; BrunoCommon.cfg requiredmultiplefocussimilarity = 0.003 ; Scanner.cfg saveautocenterimages = true ; Scanner.cfg saveautofocusimages = true ; Scanner.cfg tilterrorthreshold = 0.0005 ; Scanner.cfg usetanneredgefindingalgorithm = true ; HiSeq4000.cfg [barcode_reader] baud_rate = 9600 ; Scanner.cfg com_port_num = 4 ; Scanner.cfg handshake = none ; Scanner.cfg receiverpollingintervalms = 1000 ; Scanner.cfg scandistance = 5 ; Scanner.cfg scanvelocity = 2 ; Scanner.cfg simulated = true ; BrunoCommon.cfg simulatedbarcodes = 1234 12345 123456 1234567 ; Scanner.cfg tiltheight = 0.0 ; Scanner.cfg x_offset = 0.0 ; Scanner.cfg y_offset = 0.0 ; Scanner.cfg [bubblesensormonitor] active = false ; ChemistryCommon.cfg enablefcabubblemonitoring = false ; ChemistryCommon.cfg enablefcbbubblemonitoring = false ; ChemistryCommon.cfg [calibration/hiseq adapter plate/hiseq flow cell holder] autotiltexpectedfocus = -0.12 ; Override.cfg nominaltilt1correction = 0.4086 ; Override.cfg nominaltilt1correction_slide2 = 0.2595 ; Override.cfg nominaltilt2correction = 0.5269 ; Override.cfg nominaltilt2correction_slide2 = 0.5803 ; Override.cfg nominaltilt3correction = 0.5251 ; Override.cfg nominaltilt3correction_slide2 = 0.5589 ; Override.cfg rotationcorrection = 0 ; Override.cfg xcorrection = 2.24 ; Override.cfg xcorrection2 = 2.325 ; Override.cfg ycorrection = -45.03 ; Override.cfg ycorrection2 = -44.710 ; Override.cfg zfocusoffsetforemmissive = 0 ; Override.cfg zfocusoffsetforemmissivebottomsurface = 0 ; Override.cfg zfocusoffsetforemmissivetopsurface = 0 ; Override.cfg zfocusoffsetforreflective = 0 ; Override.cfg [calibration/hiseq adapter plate/hiseq transposed beadchip holder] autotiltexpectedfocus = -.12 ; Override.cfg nominaltilt1correction = 0.6288 ; Override.cfg nominaltilt1correction_slide2 = 0.5419 ; Override.cfg nominaltilt2correction = 0.7936 ; Override.cfg nominaltilt2correction_slide2 = 0.8409 ; Override.cfg nominaltilt3correction = 0.8424 ; Override.cfg nominaltilt3correction_slide2 = 0.8487 ; Override.cfg rotationcorrection = 0 ; Override.cfg xcorrection = 1.915 ; Override.cfg xcorrection2 = 2.325 ; Override.cfg ycorrection = -44.735 ; Override.cfg ycorrection2 = -44.710 ; Override.cfg zfocusoffsetforemmissive = 0 ; Override.cfg zfocusoffsetforemmissivebottomsurface = 0 ; Override.cfg zfocusoffsetforemmissivetopsurface = 0 ; Override.cfg zfocusoffsetforreflective = 0 ; Override.cfg [camera] fullsensorwidth = 6400 ; HiSeq4000.cfg simulatedcameramodel = 518 ; HiSeq4000.cfg timeoutinms = 10000 ; HiSeq4000.cfg [camera_hamamatsu] armcameraparallel = false ; HiSeq4000.cfg enablechanneldistribution = true ; HiSeq4000.cfg enablelut = false ; HiSeq4000.cfg enableupscale = false ; HiSeq4000.cfg memoryblocksize = 512 ; HiSeq4000.cfg roisize = 10 ; Scanner.cfg roisize_515 = 21 ; Scanner.cfg roisize_518 = 20 ; HiSeq4000.cfg tapwidth = 200 ; HiSeq4000.cfg tdimaskposition = 32 ; HiSeq4000.cfg [camera1] acquireusesmultiplebuffers = false ; Scanner.cfg autofocususesmultiplebuffers = false ; Scanner.cfg basesensorpath = 1 ; BrunoCommon.cfg driverconfigname = Camera_Hamamatsu ; Scanner.cfg fpgatriggerstdiovercameralink = true ; Scanner.cfg resolutionumperpixel = .345 ; HiSeq4000.cfg simulated = false ; Override.cfg simulatedpath = C:\ ; Scanner.cfg tdiusesmultiplebuffers = false ; Scanner.cfg [camera2] acquireusesmultiplebuffers = false ; Scanner.cfg autofocususesmultiplebuffers = false ; Scanner.cfg basesensorpath = 3 ; BrunoCommon.cfg driverconfigname = Camera_Hamamatsu ; Scanner.cfg fpgatriggerstdiovercameralink = true ; BrunoCommon.cfg resolutionumperpixel = .345 ; HiSeq4000.cfg simulated = false ; Override.cfg simulatedpath = C:\ ; Scanner.cfg tdiusesmultiplebuffers = false ; Scanner.cfg [cameraframegrabber] copyimagetobufferwhendone = false ; Scanner.cfg driverconfigname = CameraFrameGrabber_Phoenix ; Scanner.cfg enablelogging = true ; HiSeq4000.cfg enablestaticbuffers = true ; HiSeq4000.cfg logdrive = C ; HiSeq4000.cfg simulated = false ; Override.cfg simulatedimageupdate = false ; Scanner.cfg simulatedtimebetweenframecopy = 10 ; Scanner.cfg verticalimageflip = false ; HiSeq4000.cfg [cameraframegrabber_phoenix] ; Scanner.cfg [channel mfg bc a] emissionposition = Bandpass2 ; ExcitationFilter8Position.cfg excitationposition = OD1.0 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 1 ; ExcitationFilter8Position.cfg [channel mfg bc c] emissionposition = Bandpass1 ; ExcitationFilter8Position.cfg excitationposition = OD1.0 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 4 ; ExcitationFilter8Position.cfg [channel mfg bc g] emissionposition = Bandpass1 ; ExcitationFilter8Position.cfg excitationposition = OD2.0 ; HiSeq4000.cfg laserpath = 1 ; ExcitationFilter8Position.cfg sensorpath = 2 ; ExcitationFilter8Position.cfg [channel mfg bc laser cofocal a reflective] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD2.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; HiSeq4000.cfg sensorpath = 1 ; HiSeq4000.cfg [channel mfg bc laser cofocal t reflective] emissionposition = Bandpass2 ; ExcitationFilter8Position.cfg excitationposition = OD2.0 ; ExcitationFilter8Position.cfg laserpath = 1 ; ExcitationFilter8Position.cfg sensorpath = 3 ; ExcitationFilter8Position.cfg [channel mfg bc reflective] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD2.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; HiSeq4000.cfg sensorpath = 1 ; HiSeq4000.cfg [channel mfg bc reflective autocenter] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD2.5 ; HiSeq4000.cfg laserpath = 2 ; HiSeq4000.cfg sensorpath = 1 ; HiSeq4000.cfg [channel mfg bc t] emissionposition = Bandpass2 ; ExcitationFilter8Position.cfg excitationposition = OD2.0 ; HiSeq4000.cfg laserpath = 1 ; ExcitationFilter8Position.cfg sensorpath = 3 ; ExcitationFilter8Position.cfg [channel mfg bfc emissive] emissionposition = Bandpass2 ; HiSeq4000.cfg excitationposition = OD1.0 ; HiSeq4000.cfg laserpath = 2 ; HiSeq4000.cfg sensorpath = 1 ; HiSeq4000.cfg [channel reflective mfg bc a] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD4.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 1 ; ExcitationFilter8Position.cfg [channel reflective mfg bc c] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD4.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 4 ; ExcitationFilter8Position.cfg [channel reflective mfg bc g] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD4.5 ; ExcitationFilter8Position.cfg laserpath = 1 ; ExcitationFilter8Position.cfg sensorpath = 2 ; ExcitationFilter8Position.cfg [channel reflective mfg bc t] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD4.5 ; ExcitationFilter8Position.cfg laserpath = 1 ; ExcitationFilter8Position.cfg sensorpath = 3 ; ExcitationFilter8Position.cfg [channel.sequencing.518camera.bc.reflective] avgbrighttminimumintesitythreshold = 750 ; HiSeq4000.cfg minimumfocusbrightness = 500 ; HiSeq4000.cfg [channels mfg bc] channel1 = MFG BC A ; ExcitationFilter8Position.cfg channel2 = MFG BC G ; ExcitationFilter8Position.cfg channel3 = MFG BC T ; ExcitationFilter8Position.cfg channel4 = MFG BC C ; ExcitationFilter8Position.cfg [chemistrymodule] chemistryfaultmonitorupdatems = 1000 ; ChemistryCommon.cfg cosmeticname = Chem ; PEPriming.cfg delaybetweendispenseandsolenoid = 1000 ; ChemistryCommon.cfg exists = true ; Override.cfg faultmonitor = ARM9FaultMonitor ; ChemistryCommon.cfg flowcell = FlowcellFluidics ; ChemistryCommon.cfg flowcelltemperaturelogseconds = 60 ; ChemistryCommon.cfg flowcelltemperatureupdateseconds = 5 ; ChemistryCommon.cfg interlaneautodispensepump = true ; ChemistryCommon.cfg numtries = 3 ; ChemistryCommon.cfg sharedpeprimingboardserialport = ARM9PEPrimingBoardSerialPort ; PEPriming.cfg sharedserialport = ARM9BoardSerialPort ; ChemistryCommon.cfg simulated = false ; Override.cfg storagetemperature = FlexTekSTmprChemBoard ; ChemistryCommon.cfg storagetemperaturelogseconds = 300 ; ChemistryCommon.cfg storagetemperatureupdateseconds = 5 ; ChemistryCommon.cfg wastevalve = SpiWasteValveChemBoard ; ChemistryCommon.cfg [compensator] compensatortype = Galvo ; BrunoCommon.cfg delaygalvoramp = 5000 ; Scanner.cfg galvoindac = 100 ; Override.cfg galvooutdac = 115 ; Override.cfg magnetholddac = 0 ; Scanner.cfg magnetpulldac = 0 ; Scanner.cfg rangegalvoramp = 2 ; Scanner.cfg simulated = false ; Override.cfg stepsgalvoramp = 30 ; Scanner.cfg topsurfaceoffset = 0.0227 ; Override.cfg [doorsensormonitor] active = true ; ChemistryCommon.cfg enablechillerdoormonitoring = true ; HiSeq4000.cfg enablelongchillerdoormonitoring = true ; HiSeq4000.cfg enabletraydoormonitoring = true ; ChemistryCommon.cfg [drawer] exists = true ; BrunoCommon.cfg moveopenondrawerreset = true ; BrunoCommon.cfg simulated = false ; Override.cfg [duallayer] secondlayerzoffset = 0.5 ; Scanner.cfg usesecondlayer = false ; Scanner.cfg [ejectbutton] simulated = false ; Override.cfg [emissionfilter] autodetecttimeoutms = 10000 ; BrunoCommon.cfg autodetectvelocitypercentdown = 10 ; BrunoCommon.cfg autodetectvelocitypercentup = 10 ; BrunoCommon.cfg cosmeticname = Emission Filter ## ; BrunoCommon.cfg filtertype = Flipper ; HiSeq4000.cfg guiemissionfiltersetoffset = 0 ; BrunoCommon.cfg minimumallowedmovetimems = 50 ; BrunoCommon.cfg numretriesallowed = 1 ; BrunoCommon.cfg simulated = false ; Override.cfg slidermovetimeoutms = 60000 ; BrunoCommon.cfg [emissionfilter1] flippervelocitypercentdown = 40 ; BrunoCommon.cfg flippervelocitypercentup = 20 ; BrunoCommon.cfg fpgacircuitnumber = 1 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg velocitypercentdown = 60 ; BrunoCommon.cfg velocitypercentup = 80 ; BrunoCommon.cfg [emissionfilter2] flippervelocitypercentdown = 40 ; BrunoCommon.cfg flippervelocitypercentup = 20 ; BrunoCommon.cfg fpgacircuitnumber = 2 ; BrunoCommon.cfg velocitypercentdown = 60 ; BrunoCommon.cfg velocitypercentup = 80 ; BrunoCommon.cfg [emissionfilter3] flippervelocitypercentdown = 40 ; BrunoCommon.cfg flippervelocitypercentup = 20 ; BrunoCommon.cfg fpgacircuitnumber = 3 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg velocitypercentdown = 60 ; BrunoCommon.cfg velocitypercentup = 80 ; BrunoCommon.cfg [emissionfilter4] flippervelocitypercentdown = 40 ; BrunoCommon.cfg flippervelocitypercentup = 20 ; BrunoCommon.cfg fpgacircuitnumber = 4 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg velocitypercentdown = 60 ; BrunoCommon.cfg velocitypercentup = 80 ; BrunoCommon.cfg [emissionfilter5] flippervelocitypercentdown = 40 ; BrunoCommon.cfg flippervelocitypercentup = 20 ; BrunoCommon.cfg fpgacircuitnumber = 1 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg velocitypercentdown = 60 ; BrunoCommon.cfg velocitypercentup = 80 ; BrunoCommon.cfg [emissionfilter6] flippervelocitypercentdown = 40 ; BrunoCommon.cfg flippervelocitypercentup = 20 ; BrunoCommon.cfg fpgacircuitnumber = 2 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg velocitypercentdown = 60 ; BrunoCommon.cfg velocitypercentup = 80 ; BrunoCommon.cfg [emissionfilter7] flippervelocitypercentdown = 40 ; BrunoCommon.cfg flippervelocitypercentup = 20 ; BrunoCommon.cfg fpgacircuitnumber = 3 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg velocitypercentdown = 60 ; BrunoCommon.cfg velocitypercentup = 80 ; BrunoCommon.cfg [emissionfilter8] flippervelocitypercentdown = 40 ; BrunoCommon.cfg flippervelocitypercentup = 20 ; BrunoCommon.cfg fpgacircuitnumber = 4 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg velocitypercentdown = 60 ; BrunoCommon.cfg velocitypercentup = 80 ; BrunoCommon.cfg [emissionfilterset1] 0 = Open ; BrunoCommon.cfg 1 = Bandpass1 ; BrunoCommon.cfg 2 = Bandpass2 ; BrunoCommon.cfg 3 = Both ; BrunoCommon.cfg driverconfigname = EmissionFilterSet ; BrunoCommon.cfg numpositions = 4 ; BrunoCommon.cfg [emissionfilterset2] 0 = Open ; BrunoCommon.cfg 1 = Bandpass1 ; BrunoCommon.cfg 2 = Bandpass2 ; BrunoCommon.cfg 3 = Both ; BrunoCommon.cfg driverconfigname = NullEmissionFilterSet ; BrunoCommon.cfg numpositions = 4 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg [emissionfilterset3] 0 = Open ; BrunoCommon.cfg 1 = Bandpass1 ; BrunoCommon.cfg 2 = Bandpass2 ; BrunoCommon.cfg 3 = Both ; BrunoCommon.cfg driverconfigname = NullEmissionFilterSet ; BrunoCommon.cfg numpositions = 4 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg [emissionfilterset4] 0 = Open ; BrunoCommon.cfg 1 = Bandpass1 ; BrunoCommon.cfg 2 = Bandpass2 ; BrunoCommon.cfg 3 = Both ; BrunoCommon.cfg driverconfigname = NullEmissionFilterSet ; BrunoCommon.cfg numpositions = 4 ; BrunoCommon.cfg simulated = true ; BrunoCommon.cfg [emmissive_thru_focus] cvfilterwindowsize = 2 ; BrunoCommon.cfg cvsignaltonoiseminimum = 1.5 ; BrunoCommon.cfg maxdistancevariationbetweenpeaks = 50 ; HiSeq4000.cfg minpixelsfromimageedge = 10 ; BrunoCommon.cfg normalizethreshold = 0.015 ; BrunoCommon.cfg yfieldofviewmm = 1.0 ; BrunoCommon.cfg ypaddingmm = 0.008 ; BrunoCommon.cfg yvelocitymmsec = 2.7 ; HiSeq4000.cfg zfilterwindowsize = 8 ; BrunoCommon.cfg [exception illumina.instrument.archimedes.logic.emissivethroughfocusfailexception] fatal = true ; Scanner.cfg retryable = false ; Scanner.cfg [exception illumina.instrument.archimedes.logic.ftdirecoveredstatusexception] fatal = true ; Scanner.cfg retryable = false ; Scanner.cfg [exception illumina.instrument.archimedes.logic.ftdistatusexception] fatal = true ; Scanner.cfg retryable = false ; Scanner.cfg [exception illumina.instrument.archimedes.logic.incompatiblefirmwareversion] fatal = true ; Scanner.cfg retryable = false ; Scanner.cfg [exception illumina.instrument.archimedes.logic.itffocuserrorexception] fatal = false ; Scanner.cfg retryable = true ; Scanner.cfg [exception illumina.instrument.archimedes.logic.serialportreceiverexception] fatal = true ; Scanner.cfg retryable = false ; Scanner.cfg [exception illumina.instrument.archimedes.logic.zjumpedduringscanexception] fatal = false ; Scanner.cfg retryable = true ; Scanner.cfg [excitationfilter] cosmeticname = Excitation Filter # ; BrunoCommon.cfg currentpercent = 35 ; BrunoCommon.cfg filterpositionsperfilterwheel = 8 ; ExcitationFilter8Position.cfg hometimeoutms = 60000 ; BrunoCommon.cfg motorstepsperfilterwheelrev = 284.7407407407407407407407407407 ; BrunoCommon.cfg moveextratimeoutms = 60000 ; BrunoCommon.cfg numhomeretries = 1 ; BrunoCommon.cfg nummoveretries = 1 ; BrunoCommon.cfg velocity40mhzratio = 131072 ; BrunoCommon.cfg [excitationfilter1] 0 = BlockPosition ; ExcitationFilter8Position.cfg 1 = OD4.0 ; ExcitationFilter8Position.cfg 2 = OD2.0 ; ExcitationFilter8Position.cfg 3 = OD1.0 ; ExcitationFilter8Position.cfg 4 = OpenBandPassPosition ; ExcitationFilter8Position.cfg 5 = OD0.2 ; ExcitationFilter8Position.cfg 6 = OD0.4 ; ExcitationFilter8Position.cfg 7 = OD0.6 ; ExcitationFilter8Position.cfg fpgacommandsuffix = 1 ; ExcitationFilter8Position.cfg homeoffsetsteps = 0 ; ExcitationFilter8Position.cfg [excitationfilter2] 0 = BlockPosition ; ExcitationFilter8Position.cfg 1 = OD4.5 ; ExcitationFilter8Position.cfg 2 = OD2.5 ; ExcitationFilter8Position.cfg 3 = OD1.0 ; ExcitationFilter8Position.cfg 4 = OpenBandPassPosition ; ExcitationFilter8Position.cfg 5 = OD0.2 ; ExcitationFilter8Position.cfg 6 = OD0.4 ; ExcitationFilter8Position.cfg 7 = OD0.6 ; ExcitationFilter8Position.cfg fpgacommandsuffix = 2 ; ExcitationFilter8Position.cfg homeoffsetsteps = 0 ; ExcitationFilter8Position.cfg [filtervariability] fc1scanfiltersfile = ".\Variability Files\VariableFilters_FC1_606Cycles.tsv" ; ExcitationFilter8Position.cfg fc2scanfiltersfile = ".\Variability Files\VariableFilters_FC2_606Cycles.tsv" ; ExcitationFilter8Position.cfg usefiltervariablefile = true ; ExcitationFilter8Position.cfg [flextekfctmprchemboard] ; ChemistryCommon.cfg [flextekstmprchemboard] ; ChemistryCommon.cfg [flowcellfluidics] cosmeticname = FC ; PEPriming.cfg flowcelltemperature = FlexTekFCtmprChemBoard ; ChemistryCommon.cfg peprimingclass = PEPriming ; PEPriming.cfg pump = KloehnPumpPullBruno ; ChemistryCommon.cfg [flowsensormonitor] active = false ; ChemistryCommon.cfg enablechillerflowmonitoring = true ; ChemistryCommon.cfg enablefcflowmonitoring = true ; ChemistryCommon.cfg enablelaserplateflowmonitoring = true ; ChemistryCommon.cfg [focustrackinglaser] laseronactivehigh = false ; StormCommon.cfg laserondelayms = 500 ; FocusTrackingLaser.cfg [fpga] cmdtimeoutpaddingms = 10000 ; HiSeq4000.cfg command_baud_rate = 115200 ; Scanner.cfg command_com_port_num = IL000004 ; Scanner.cfg command_delay = 1 ; Scanner.cfg command_handshake = none ; Scanner.cfg dithercyclepixeloffsetinline = 18 ; Scanner.cfg fpga_deinterlace = false ; Scanner.cfg groupcollectionlineshift = 10 ; BrunoCommon.cfg listftdiserialports = true ; Scanner.cfg pilotmioboard = true ; BrunoPilotCommon.cfg response_baud_rate = 115200 ; Scanner.cfg response_com_port_num = IL000005 ; Scanner.cfg response_handshake = none ; Scanner.cfg response_receiverpollingintervalms = 50 ; Scanner.cfg simulated = false ; Override.cfg simulatedversion = 3.99.99 ; BrunoCommon.cfg store_yz_encoder_positions = true ; Scanner.cfg [fpga features v1] array_height_sensor = 4.5 ; FPGA.cfg deinterlace = 4.5 ; FPGA.cfg dynamic_focus = 4.25 ; FPGA.cfg ejen = 4.20 ; FPGA.cfg filterslider_separate_speeds = 4.4 ; FPGA.cfg free_run = 4.5 ; FPGA.cfg hm2 = 4.22 ; FPGA.cfg index_counter = 4.4 ; FPGA.cfg laser_pwr = 4.6 ; FPGA.cfg laserpb = 99.99 ; FPGA.cfg laserset = 4.4 ; FPGA.cfg led_cmds = 4.13 ; FPGA.cfg lsen = 4.22 ; FPGA.cfg short_cmds = 4.21 ; FPGA.cfg sw_bruno = 4.14 ; FPGA.cfg swcvdbg = 4.33 ; FPGA.cfg swsig_tower = 4.5 ; FPGA.cfg swvix = 4.21 ; FPGA.cfg swyz_pos = 4.14 ; FPGA.cfg [fpga features v2] array_height_sensor = 0.0 ; FPGA.cfg deinterlace = 0.0 ; FPGA.cfg dynamic_focus = 0.0 ; FPGA.cfg ejen = 0.0 ; FPGA.cfg filterslider_separate_speeds = 0.0 ; FPGA.cfg free_run = 0.0 ; FPGA.cfg hm2 = 0.0 ; FPGA.cfg index_counter = 0.0 ; FPGA.cfg laser_pwr = 0.0 ; FPGA.cfg laserpb = 0.27 ; FPGA.cfg laserset = 0.0 ; FPGA.cfg led_cmds = 0.0 ; FPGA.cfg lsen = 0.0 ; FPGA.cfg short_cmds = 0.0 ; FPGA.cfg sw_bruno = 0.0 ; FPGA.cfg swsig_tower = 0.0 ; FPGA.cfg swvix = 0.0 ; FPGA.cfg swyz_pos = 0.0 ; FPGA.cfg zarm = 0.0 ; FPGA.cfg [fpga features v3] array_height_sensor = 0.0 ; FPGA.cfg camera_selection = 0.5 ; FPGA.cfg deinterlace = 0.0 ; FPGA.cfg door_s_cmds = 0.24 ; FPGA.cfg doorsenrd = 0.32 ; FPGA.cfg doorsstate = 0.29 ; FPGA.cfg dynamic_focus = 0.0 ; FPGA.cfg ejen = 0.0 ; FPGA.cfg filterslider_separate_speeds = 0.0 ; FPGA.cfg free_run = 0.0 ; FPGA.cfg hm2 = 0.0 ; FPGA.cfg hw_zramp_zvelctrl_and_more = 0.1 ; FPGA.cfg index_counter = 0.0 ; FPGA.cfg laser_pwr = 0.0 ; FPGA.cfg laserpb = 0.27 ; FPGA.cfg laserset = 0.0 ; FPGA.cfg led_cmds = 0.0 ; FPGA.cfg ledbar_ms_timing = 0.26 ; FPGA.cfg ledbarswap = 0.26 ; FPGA.cfg ledharm = 0.26 ; FPGA.cfg ledmodepb = 0.18 ; FPGA.cfg ledmodepwr = 0.33 ; FPGA.cfg lsen = 0.0 ; FPGA.cfg miscrvc = 0.0 ; FPGA.cfg msgsen = 0.29 ; FPGA.cfg pwrben = 0.33 ; FPGA.cfg short_cmds = 0.0 ; FPGA.cfg sw_bruno = 0.0 ; FPGA.cfg sw_ylck = 0.15 ; FPGA.cfg swbeadchip = 0.25 ; FPGA.cfg swbeadcompat = 0.37 ; FPGA.cfg swceiling = 0.33 ; FPGA.cfg swcvdbg = 0.0 ; FPGA.cfg swdbugpxlx2 = 0.23 ; FPGA.cfg swdith_igain = 0.33 ; FPGA.cfg swdith_ihist = 0.33 ; FPGA.cfg swdith_shift = 3.0 ; FPGA.cfg swdith_size = 0.33 ; FPGA.cfg swftlsr = 0.16 ; FPGA.cfg swlsrshut = 0.15 ; FPGA.cfg swsig_tower = 0.0 ; FPGA.cfg swtgimage = 0.37 ; FPGA.cfg swtime = 0.19 ; FPGA.cfg swvix = 0.0 ; FPGA.cfg swyz_pos = 0.0 ; FPGA.cfg swzlag = 0.15 ; FPGA.cfg t1moveto = 0.16x ; FPGA.cfg tdibb = 0.16 ; FPGA.cfg tdiclines = 0.16x ; FPGA.cfg tdimask = 0.13 ; FPGA.cfg tdipulses = 0.16z15 ; FPGA.cfg tdiyarm3 = 0.16z ; FPGA.cfg tdiyarm4 = 0.36 ; FPGA.cfg tdiystart = 0.36 ; FPGA.cfg tld = 0.16z ; FPGA.cfg zarm = 0.0 ; FPGA.cfg zfreqcl = 9.0 ; FPGA.cfg zmvmathfix = 0.27 ; FPGA.cfg zsel = 2.06 ; FPGA.cfg zspec = 0.16z ; FPGA.cfg [fpga features v4] array_height_sensor = 0.0 ; FPGA.cfg deinterlace = 0.0 ; FPGA.cfg dynamic_focus = 0.0 ; FPGA.cfg ejen = 0.0 ; FPGA.cfg filterslider_separate_speeds = 0.0 ; FPGA.cfg free_run = 0.0 ; FPGA.cfg hm2 = 0.0 ; FPGA.cfg hw_zramp_zvelctrl_and_more = 0.1 ; FPGA.cfg index_counter = 0.0 ; FPGA.cfg laser_pwr = 0.0 ; FPGA.cfg laserpb = 99.99 ; FPGA.cfg laserset = 0.0 ; FPGA.cfg led_cmds = 0.0 ; FPGA.cfg lsen = 0.0 ; FPGA.cfg short_cmds = 0.0 ; FPGA.cfg sw_bruno = 0.0 ; FPGA.cfg swceiling = 0.18 ; FPGA.cfg swcvdbg = 0.0 ; FPGA.cfg swdith_igain = 0.19 ; FPGA.cfg swdith_ihist = 0.19 ; FPGA.cfg swdith_size = 0.15 ; FPGA.cfg swsig_tower = 0.0 ; FPGA.cfg swtime = 99.99 ; FPGA.cfg swvix = 0.0 ; FPGA.cfg swyz_pos = 0.0 ; FPGA.cfg swzlag = 0.4 ; FPGA.cfg t1moveto = 0.4 ; FPGA.cfg tdimask = 0.4 ; FPGA.cfg zarm = 0.20 ; FPGA.cfg [fpga features v7] array_height_sensor = 0.0 ; FPGA.cfg camera_selection = 0.0 ; FPGA.cfg chn_dist = 0.0 ; FPGA.cfg deinterlace = 0.0 ; FPGA.cfg door_s_cmds = 0.0 ; FPGA.cfg doorsenrd = 0.0 ; FPGA.cfg doorsstate = 0.0 ; FPGA.cfg dynamic_focus = 0.0 ; FPGA.cfg ejen = 0.0 ; FPGA.cfg filterslider_separate_speeds = 0.0 ; FPGA.cfg free_run = 0.0 ; FPGA.cfg hm2 = 0.0 ; FPGA.cfg hw_zramp_zvelctrl_and_more = 0.0 ; FPGA.cfg index_counter = 0.0 ; FPGA.cfg laser_dz = 0.0 ; FPGA.cfg laser_pwr = 0.0 ; FPGA.cfg laserpb = 0.0 ; FPGA.cfg laserset = 0.0 ; FPGA.cfg led_cmds = 0.0 ; FPGA.cfg ledbar_ms_timing = 0.0 ; FPGA.cfg ledbarswap = 0.0 ; FPGA.cfg ledharm = 0.0 ; FPGA.cfg ledmodepb = 0.0 ; FPGA.cfg ledmodepwr = 0.0 ; FPGA.cfg lsen = 0.0 ; FPGA.cfg miscrvc = 0.0 ; FPGA.cfg msgsen = 0.0 ; FPGA.cfg pwrben = 0.0 ; FPGA.cfg short_cmds = 0.0 ; FPGA.cfg sw_bruno = 0.0 ; FPGA.cfg sw_ylck = 0.0 ; FPGA.cfg swbeadchip = 0.0 ; FPGA.cfg swceiling = 0.0 ; FPGA.cfg swcvdbg = 0.0 ; FPGA.cfg swdbugpxlx2 = 0.0 ; FPGA.cfg swdith_igain = 0.0 ; FPGA.cfg swdith_ihist = 0.0 ; FPGA.cfg swdith_size = 0.0 ; FPGA.cfg swftlsr = 0.0 ; FPGA.cfg swgrp_size = 7.3 ; FPGA.cfg swlsrshut = 0.0 ; FPGA.cfg swsig_tower = 0.0 ; FPGA.cfg swtime = 0.0 ; FPGA.cfg swvix = 0.0 ; FPGA.cfg swyz_pos = 0.0 ; FPGA.cfg swzlag = 0.0 ; FPGA.cfg t1moveto = 0.0 ; FPGA.cfg tdibb = 0.0 ; FPGA.cfg tdiclines = 0.0 ; FPGA.cfg tdimask = 0.0 ; FPGA.cfg tdipulses = 0.0 ; FPGA.cfg tdiyarm3 = 0.0 ; FPGA.cfg tdiyarm4 = 0.0 ; FPGA.cfg tdiystart = 0.0 ; FPGA.cfg tld = 0.0 ; FPGA.cfg zarm = 0.0 ; FPGA.cfg zfreqcl = 7.0 ; FPGA.cfg zmvmathfix = 0.0 ; FPGA.cfg zsel = 0.0 ; FPGA.cfg zspec = 0.0 ; FPGA.cfg [fpga features v10] array_height_sensor = 0.0 ; FPGA.cfg camera_selection = 0.0 ; FPGA.cfg chn_dist = 0.0 ; FPGA.cfg deinterlace = 0.0 ; FPGA.cfg door_s_cmds = 0.0 ; FPGA.cfg doorsenrd = 0.0 ; FPGA.cfg doorsstate = 0.0 ; FPGA.cfg dynamic_focus = 0.0 ; FPGA.cfg ejen = 0.0 ; FPGA.cfg filterslider_separate_speeds = 0.0 ; FPGA.cfg free_run = 0.0 ; FPGA.cfg hm2 = 0.0 ; FPGA.cfg hw_zramp_zvelctrl_and_more = 0.0 ; FPGA.cfg index_counter = 0.0 ; FPGA.cfg laser_dz = 0.0 ; FPGA.cfg laser_pwr = 0.0 ; FPGA.cfg laserpb = 0.0 ; FPGA.cfg laserset = 0.0 ; FPGA.cfg led_cmds = 0.0 ; FPGA.cfg ledbar_ms_timing = 0.0 ; FPGA.cfg ledbarswap = 0.0 ; FPGA.cfg ledharm = 0.0 ; FPGA.cfg ledmodepb = 0.0 ; FPGA.cfg ledmodepwr = 0.0 ; FPGA.cfg lsen = 0.0 ; FPGA.cfg minimum_recommended_version = 32.18 ; FPGA.cfg miscrvc = 0.0 ; FPGA.cfg msgsen = 0.0 ; FPGA.cfg pwrben = 0.0 ; FPGA.cfg short_cmds = 0.0 ; FPGA.cfg sw_bruno = 0.0 ; FPGA.cfg sw_ylck = 0.0 ; FPGA.cfg swbeadchip = 0.0 ; FPGA.cfg swbidir = 0.0 ; FPGA.cfg swbsf_addl = 32.18 ; FPGA.cfg swbsf_base = 32.18 ; FPGA.cfg swceiling = 0.0 ; FPGA.cfg swcvdbg = 0.0 ; FPGA.cfg swdbugpxlx2 = 0.0 ; FPGA.cfg swdith_igain = 0.0 ; FPGA.cfg swdith_ihist = 0.0 ; FPGA.cfg swdith_size = 0.0 ; FPGA.cfg swflash_prgm = 0.0 ; FPGA.cfg swftlsr = 0.0 ; FPGA.cfg swgrp_size = 0.0 ; FPGA.cfg swhandoffz = 32.18 ; FPGA.cfg swlsrshut = 0.0 ; FPGA.cfg swnumstep = 0.0 ; FPGA.cfg swoof_cnt = 34.9 ; FPGA.cfg swoof_rdstat = 34.9 ; FPGA.cfg swpitf_max = 0.0 ; FPGA.cfg swsig_tower = 0.0 ; FPGA.cfg swtest = 0.0 ; FPGA.cfg swtime = 0.0 ; FPGA.cfg swvix = 0.0 ; FPGA.cfg swyz_pos = 0.0 ; FPGA.cfg swzlag = 0.0 ; FPGA.cfg t1moveto = 0.0 ; FPGA.cfg tdibb = 0.0 ; FPGA.cfg tdiclines = 0.0 ; FPGA.cfg tdilines = 32.12 ; FPGA.cfg tdimask = 0.0 ; FPGA.cfg tdipulses = 0.0 ; FPGA.cfg tdiyarm3 = 0.0 ; FPGA.cfg tdiyarm4 = 0.0 ; FPGA.cfg tdiystart = 0.0 ; FPGA.cfg tld = 0.0 ; FPGA.cfg zarm = 0.0 ; FPGA.cfg zfreqcl = 0.0 ; FPGA.cfg zmvmathfix = 0.0 ; FPGA.cfg zsel = 0.0 ; FPGA.cfg zspec = 0.0 ; FPGA.cfg [fpga initialization] line0 = SW_BRUNO 1 ; BrunoCommon.cfg line1 = SWGRP_SIZE 50 ; HiSeq4000.cfg line2 = SWNUMSTEP 600 ; HiSeq4000.cfg line3 = SWPITF_MAX 5240 ; HiSeq4000.cfg line4 = SWHANDOFFZ 524 ; HiSeq4000.cfg line5 = SWBSF_BASE 60 ; HiSeq4000.cfg line6 = SWBSF_ADDL 20 ; HiSeq4000.cfg line7 = SWTEST 1 ; HiSeq4000.cfg line100 = SWBEADCOMPAT 0 ; HiSeqControlSoftware.Hardware.cfg [ftdivicivalve] cosmeticname = ViciValve ; ChemistryCommon.cfg firmwaremodelvalidprefix1 = I-PD-AMHX ; ChemistryCommon.cfg [header notes] note1 = ************************************************************************** ; Scanner.cfg note2 = ********** DO NOT EDIT THIS FILE!!! EDIT OVERRIDE.CFG INSTEAD ************ ; Scanner.cfg note3 = ************************************************************************** ; Scanner.cfg [integrated_thru_focus] showitframp = true ; HiSeq4000.cfg ydistancetolockdithermm = 0.2 ; BrunoCommon.cfg zsettlingtimesec = 0.1 ; BrunoCommon.cfg ztraveltotalmm = 0.04 ; BrunoCommon.cfg zvelocitymmpersec = 1.391 ; HiSeq4000.cfg [kloehncontrollerpump] cosmeticname = KloehnPump ; ChemistryCommon.cfg [kloehnpumppullbruno] cosmeticname = KloehnPump ; ChemistryCommon.cfg pump = KloehnControllerPump ; ChemistryCommon.cfg selectorvalve = FtdiViciValve ; ChemistryCommon.cfg shutoffvalve = AntiSiphonShutoffValve ; ChemistryCommon.cfg [kloehnserialport] ; ChemistryCommon.cfg [lanedetilt] enabled = true ; HiSeq4000.cfg lane1cap = -0.2 ; HiSeq4000.cfg lane1threshold = -2 ; HiSeq4000.cfg lane2cap = -0.2 ; HiSeq4000.cfg lane2threshold = -2 ; HiSeq4000.cfg lane3cap = -0.2 ; HiSeq4000.cfg lane3threshold = -2 ; HiSeq4000.cfg lane4cap = -0.2 ; HiSeq4000.cfg lane4threshold = -2 ; HiSeq4000.cfg lane5cap = 2 ; HiSeq4000.cfg lane5threshold = 0.2 ; HiSeq4000.cfg lane6cap = 2 ; HiSeq4000.cfg lane6threshold = 0.2 ; HiSeq4000.cfg lane7cap = 2 ; HiSeq4000.cfg lane7threshold = 0.2 ; HiSeq4000.cfg lane8cap = 2 ; HiSeq4000.cfg lane8threshold = 0.2 ; HiSeq4000.cfg lanes = 1,8 ; HiSeq4000.cfg multiplier = 0.7 ; HiSeq4000.cfg [laser] checklaserperformance = true ; HiSeq4000.cfg lasermeasuredoversetpowerratioforerror = 0.0 ; Override.cfg lasermeasuredoversetpowerratioforwarning = 0.0 ; Override.cfg numparsevalueretries = 3 ; Scanner.cfg pollingminpower = 100 ; Scanner.cfg pollingpowervariationthreshold = 5 ; Scanner.cfg pollingsleeptimemilliseconds = 3000 ; Scanner.cfg pollingsleeptimetotalseconds = 30 ; HiSeq4000.cfg [laser1] baud_rate = 9600 ; Laser1_532_Smd6000_APC.cfg color = Green ; Laser1_532_Smd6000_APC.cfg com_port_num = IL000006 ; Laser1_532_Smd6000_APC.cfg controllermodel = Smd6000 ; Laser1_532_Smd6000_APC.cfg defaultlasertimeoutms = 60000 ; Laser1_532_Smd6000_APC.cfg handshake = none ; Laser1_532_Smd6000_APC.cfg lasercurrentpercentmonitoringthreshold = 100.0 ; HiSeq4000.cfg laserpower = 450 ; Laser1_532_Smd6000_APC.cfg logpollingcommandsandresponses = false ; Scanner.cfg maxlaserpower = 1000 ; HiSeq4000.cfg minlaserpower = 0 ; Laser1_532_Smd6000_APC.cfg powercontroltype = APC ; Laser1_532_Smd6000_APC.cfg powercontrolunits = mW ; Laser1_532_Smd6000_APC.cfg receiverpollingintervalms = 50 ; Laser1_532_Smd6000_APC.cfg temperatureupdateseconds = 300 ; Scanner.cfg wavelength = 532 ; Laser1_532_Smd6000_APC.cfg [laser2] baud_rate = 9600 ; Laser2_660_Smd6000_APC.cfg color = Red ; Laser2_660_Smd6000_APC.cfg com_port_num = IL000007 ; Laser2_660_Smd6000_APC.cfg controllermodel = Smd6000 ; Laser2_660_Smd6000_APC.cfg defaultlasertimeoutms = 60000 ; Laser2_660_Smd6000_APC.cfg handshake = none ; Laser2_660_Smd6000_APC.cfg lasercurrentpercentmonitoringthreshold = 100.0 ; HiSeq4000.cfg laserpower = 300 ; Laser2_660_Smd6000_APC.cfg logpollingcommandsandresponses = false ; Scanner.cfg maxlaserpower = 1200 ; HiSeq4000.cfg minlaserpower = 0 ; Laser2_660_Smd6000_APC.cfg powercontroltype = APC ; Laser2_660_Smd6000_APC.cfg powercontrolunits = mW ; Laser2_660_Smd6000_APC.cfg receiverpollingintervalms = 50 ; Laser2_660_Smd6000_APC.cfg temperatureupdateseconds = 300 ; Scanner.cfg wavelength = 660 ; Laser2_660_Smd6000_APC.cfg [lasershutter] shutterdelayms = 100 ; LaserShutter.cfg simulated = false ; Override.cfg [ledbar] pulserate = 23 ; BrunoLEDBars.cfg sweeprate = 48 ; BrunoLEDBars.cfg sweeprateforblinking = 94 ; BrunoLEDBars.cfg sweeprateforsweeping = 85 ; BrunoLEDBars.cfg yrateforblinking = 63 ; BrunoLEDBars.cfg yrateforsweeping = 63 ; BrunoLEDBars.cfg [liquidlevelsensormonitor] active = true ; ChemistryCommon.cfg coolantsensor = 2 ; ChemistryCommon.cfg coolingsystemwarningmessage = A system sensor is indicating a low coolant reservoir level, please contact Illumina Technical Support ; ChemistryCommon.cfg enablecoolantliquidlevelmonitoring = false ; ChemistryCommon.cfg enablereagentwasteliquidlevelmonitoring = false ; ChemistryCommon.cfg [lookup_focus_tracking] maxdifferenceinzposition = 0.010 ; HiSeq4000.cfg [misc_io] enablearrayheightsensor = false ; Scanner.cfg [offaxis autofocus] bubbledetectionsetting = 4:1000:75:10 ; Scanner.cfg centroidsnapmode = 25 ; Scanner.cfg closeloopmode = 12 ; BrunoCommon.cfg dualspot = true ; BrunoCommon.cfg enablecamerarotation = true ; Scanner.cfg enableofflinefocusmodeling = true ; BrunoCommon.cfg enablestreamforcloseloop = false ; Scanner.cfg focusincrement_mm = 0.0003 ; Scanner.cfg globalservoparameter = 0.6:0.2:0.0:65535:65535:0.1 ; Scanner.cfg numberoffocus = 31 ; Scanner.cfg offaxisdebugmode = StreamCentroids ; Scanner.cfg offlinefocusmodelfilepath = Default ; Scanner.cfg openloopmode = 20 ; Scanner.cfg reportzpositionafterscan = false ; Scanner.cfg smartcameraimagepath = C:\SmartCameraImages ; Scanner.cfg [offaxis smart camera] analytical gain = 64 ; Scanner.cfg analytical shutterspeed = 50 ; Scanner.cfg enable bubble detection = true ; Scanner.cfg ip_address = 192.168.0.65 ; Scanner.cfg sequencing gain = 256 ; Scanner.cfg sequencing shutterspeed = 1000 ; Scanner.cfg simulated = true ; HiSeq4000.cfg [passivedoor] exists = true ; Override.cfg [pepriming] aspirateextradelayms = 30000 ; HiSeq4000.cfg bypassvalveclass = PEPrimingBypassValve ; PEPriming.cfg cosmeticname = PEPriming ; PEPriming.cfg dispenseextradelayms = 15000 ; HiSeq4000.cfg primingvolumeul = 1500 ; PEPriming.cfg pumpclass = PEPrimingPump ; PEPriming.cfg simulated = false ; Override.cfg swappedvalves = false ; PEPriming.cfg valvelatencyms = 5000 ; HiSeq4000.cfg wastevalveclass = PEPrimingWasteValve ; PEPriming.cfg [peprimingbypassvalve] cosmeticname = PE BypassValve ; PEPriming.cfg simulated = false ; Override.cfg [peprimingpump] cosmeticname = PE PrimingPump ; PEPriming.cfg pumptimeperstrokesecs = 66 ; HiSeq4000.cfg simulated = false ; Override.cfg [peprimingwastevalve] cosmeticname = PE WasteValve ; PEPriming.cfg simulated = false ; Override.cfg [powersensormonitor] active = false ; ChemistryCommon.cfg enable12vpowersupplymonitoring = true ; ChemistryCommon.cfg enable6vpowersupplymonitoring = true ; ChemistryCommon.cfg enablefcapowersupplymonitoring = true ; ChemistryCommon.cfg enablefcbpowersupplymonitoring = true ; ChemistryCommon.cfg enablepumppowersupplymonitoring = true ; ChemistryCommon.cfg enablercapowersupplymonitoring = true ; ChemistryCommon.cfg enablercbpowersupplymonitoring = true ; ChemistryCommon.cfg [ptc] baud_rate = 9600 ; Scanner.cfg com_port_num = 1 ; Scanner.cfg handshake = none ; Scanner.cfg receiverpollingintervalms = 1000 ; Scanner.cfg [racksensormonitor] active = false ; ChemistryCommon.cfg enablerack1sensormonitoring = true ; ChemistryCommon.cfg enablerack2sensormonitoring = true ; ChemistryCommon.cfg enablerack3sensormonitoring = true ; ChemistryCommon.cfg [recipe] minimumversion = 1.3.6 ; BrunoCommon.cfg [registration] registrationcorestoneratio = 0.70 ; Scanner.cfg swathbeadtoneration = 0.70 ; Scanner.cfg zeroidatonfailure = false ; Scanner.cfg [rs232] com_port_offset = 9 ; Scanner.cfg devicedisablesleepms = 3000 ; Scanner.cfg deviceenablesleepms = 5000 ; Scanner.cfg ftdireadtimeoutms = 5000 ; Scanner.cfg ftdirecoveryinitialdelaysecs = 5 ; Scanner.cfg ftdirecoverynumretries = 10 ; Scanner.cfg ftdirecoveryrescantolistportsdelaysecs = 10 ; Scanner.cfg ftdirecoveryretrydelaysecs = 10 ; Scanner.cfg ftdiregisteringtimeoutsecs = 60 ; Scanner.cfg ftdiresetpiperetrycount = 1000 ; Scanner.cfg ftdisetusbparameters = true ; Scanner.cfg ftdiwritetimeoutms = 0 ; Scanner.cfg listactivedevices = true ; Scanner.cfg usbportapi = FTDI ; Scanner.cfg [sbsprime] aspiraterate = 250 ; ChemistryCommon.cfg dispenserate = 2000 ; ChemistryCommon.cfg rapidrunaspiraterate = 1000 ; ChemistryCommon.cfg rapidrundispenserate = 2500 ; ChemistryCommon.cfg rapidrunvolume = 125 ; ChemistryCommon.cfg volume = 125 ; ChemistryCommon.cfg [scan] createcycletimelog = true ; Scanner.cfg cvfpgasimmode = false ; Scanner.cfg etftriggeroffsetmm = 0.12 ; BrunoCommon.cfg extradistancetoaddtoaccelerationmm = 0.2 ; HiSeq4000.cfg extradistancetoaddtodecelerationmm = 0.3 ; Scanner.cfg fieldofviewpaddingheightmm = 0.0 ; BrunoCommon.cfg fieldofviewpaddingwidthmm = 0.0 ; BrunoCommon.cfg logcamerapulsesafterswath = true ; Scanner.cfg logclearinglinesafterswath = true ; Scanner.cfg logymotorencoderbeforeafterswath = true ; Scanner.cfg maxallowablezprofileerrormm = 0.00025 ; Scanner.cfg minslidecurvaturetoenablezprofilemovesmm = 0.001 ; Scanner.cfg minzpositionjumptocauseerrormm = 0.004 ; Scanner.cfg numetfcycles = 3 ; BrunoCommon.cfg numoflinestoskipforlft = 500 ; BrunoCommon.cfg releaseresumechemistrylockatlane = 7 ; HiSeq4000.cfg retracttiltmotorsbeforeeachslide = true ; Scanner.cfg scanningparadigm = Default ; HiSeq4000.cfg useallchannelsforetfandlft = true ; BrunoCommon.cfg waitforysettlingafterretrace = false ; BrunoCommon.cfg waitforysettlingatendofswath = false ; BrunoCommon.cfg zprofilechanneltosave = A ; HiSeq4000.cfg zprofilemovesdonefromfirmware = true ; Scanner.cfg zprofiletimecorrectionms = -100.0 ; Scanner.cfg zstepdistancemm = 0.0005 ; Scanner.cfg zstepvelocitymmpersec = 0.5 ; Scanner.cfg [scanner] ; Scanner.cfg [scanner.chemistrymodule] exists = true ; Override.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.arm9boarddiagserialport] com_port_num = ARM9DIAG ; BrunoPilotChemPortNames.cfg [scanner.chemistrymodule.arm9boardserialport] com_port_num = ARM9CHEM ; BrunoPilotChemPortNames.cfg flowcell1rtd_offset = 0.5642858 ; Override.cfg flowcell1rtd_slope = 0.9642857 ; Override.cfg flowcell1tec_feed_frw_stepsize = 1.875 ; ChemistryCommon.cfg flowcell1tec_feed_frw_threshold = 6.0 ; ChemistryCommon.cfg flowcell1tec_servo_derivative = 0.0 ; ChemistryCommon.cfg flowcell1tec_servo_integral = 0.1 ; ChemistryCommon.cfg flowcell1tec_servo_proportional = 0.2 ; ChemistryCommon.cfg flowcell2rtd_offset = 0.2857125 ; Override.cfg flowcell2rtd_slope = 0.9657144 ; Override.cfg flowcell2tec_feed_frw_stepsize = 1.875 ; ChemistryCommon.cfg flowcell2tec_feed_frw_threshold = 6.0 ; ChemistryCommon.cfg flowcell2tec_servo_derivative = 0.0 ; ChemistryCommon.cfg flowcell2tec_servo_integral = 0.1 ; ChemistryCommon.cfg flowcell2tec_servo_proportional = 0.2 ; ChemistryCommon.cfg reagent1rtd_offset = 0 ; Override.cfg reagent1rtd_slope = 1 ; Override.cfg reagent1tec_feed_frw_stepsize = 1.875 ; ChemistryCommon.cfg reagent1tec_feed_frw_threshold = 6.0 ; ChemistryCommon.cfg reagent1tec_servo_derivative = 0.0 ; ChemistryCommon.cfg reagent1tec_servo_integral = 0.2 ; ChemistryCommon.cfg reagent1tec_servo_proportional = 0.8 ; ChemistryCommon.cfg reagent2rtd_offset = 0 ; Override.cfg reagent2rtd_slope = 1 ; Override.cfg reagent2tec_feed_frw_stepsize = 1.875 ; ChemistryCommon.cfg reagent2tec_feed_frw_threshold = 6.0 ; ChemistryCommon.cfg reagent2tec_servo_derivative = 0.0 ; ChemistryCommon.cfg reagent2tec_servo_integral = 0.2 ; ChemistryCommon.cfg reagent2tec_servo_proportional = 0.8 ; ChemistryCommon.cfg reagent3rtd_offset = 0.4000004 ; Override.cfg reagent3rtd_slope = 0.98 ; Override.cfg reagent3tec_servo_derivative = 0.0 ; ChemistryCommon.cfg reagent3tec_servo_integral = 1.1 ; ChemistryCommon.cfg reagent3tec_servo_proportional = 1.7 ; ChemistryCommon.cfg vacuumdacsetting = 2130 ; ChemistryCommon.cfg [scanner.chemistrymodule.arm9peprimingboardserialport] chiller_pump_interval = 86400 ; PEPriming.cfg chiller_pump_pulses = 100 ; PEPriming.cfg com_port_num = PCIO ; PEPriming.cfg enablecondensationpumpsettings = true ; PEPriming.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.flextekstmprchemboard] chillersetpointtemperature = 4 ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1] cosmeticname = FC A ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.flextekfctmprchemboard] ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.kloehnpumppullbruno] cosmeticname = KloehnPump A ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.kloehnpumppullbruno.antisiphonshutoffvalve] cosmeticname = AntiSiphonShutoffValve A ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.kloehnpumppullbruno.kloehncontrollerpump] asyncdeliverydelay = false ; ChemistryCommon.cfg cosmeticname = KloehnPump A ; ChemistryCommon.cfg delayforsolution1 = 5000 ; HiSeq4000.cfg delayforsolution2 = 5000 ; HiSeq4000.cfg delayforsolution3 = 5000 ; HiSeq4000.cfg delayforsolution4 = 5000 ; HiSeq4000.cfg delayforsolution5 = 5000 ; HiSeq4000.cfg delayforsolution6 = 5000 ; HiSeq4000.cfg delayforsolution7 = 5000 ; HiSeq4000.cfg delayforsolution8 = 5000 ; HiSeq4000.cfg delayforsolution9 = 5000 ; HiSeq4000.cfg delayforsolution10 = 5000 ; HiSeq4000.cfg delayforsolution11 = 5000 ; HiSeq4000.cfg delayforsolution12 = 5000 ; HiSeq4000.cfg delayforsolution13 = 5000 ; HiSeq4000.cfg delayforsolution14 = 5000 ; HiSeq4000.cfg delayforsolution15 = 5000 ; HiSeq4000.cfg delayforsolution16 = 5000 ; HiSeq4000.cfg delayforsolution17 = 5000 ; HiSeq4000.cfg delayforsolution18 = 5000 ; HiSeq4000.cfg delayforsolution19 = 5000 ; HiSeq4000.cfg delayforsolution20 = 5000 ; HiSeq4000.cfg delayforsolution21 = 5000 ; HiSeq4000.cfg delayforsolution22 = 5000 ; HiSeq4000.cfg delayforsolution23 = 5000 ; HiSeq4000.cfg delayforsolution24 = 5000 ; HiSeq4000.cfg delayforsolution25 = 5000 ; HiSeq4000.cfg delayforsolution26 = 5000 ; HiSeq4000.cfg motionvariable_acceleration = 7 ; ChemistryCommon.cfg motionvariable_deceleration = 7 ; ChemistryCommon.cfg multiaspirate = false ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.kloehnpumppullbruno.kloehncontrollerpump.kloehnserialport] com_port_num = KLOEHNA ; BrunoPilotChemPortNames.cfg cosmeticname = KloehnSerialPort A ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2] cosmeticname = FC B ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.kloehnpumppullbruno.ftdivicivalve1] avoidposition = 7 ; ChemistryCommon.cfg cosmeticname = Valve A1 ; ChemistryCommon.cfg initialposition = 9 ; ChemistryCommon.cfg numberofports = 10 ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.kloehnpumppullbruno.ftdivicivalve1.serialport] com_port_num = VICIA1 ; BrunoPilotChemPortNames.cfg cosmeticname = SerialPort A1 ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.kloehnpumppullbruno.ftdivicivalve2] avoidposition = 0 ; ChemistryCommon.cfg cosmeticname = Valve A2 ; ChemistryCommon.cfg exists = true ; BrunoPilotChemPortNames.cfg initialposition = 1 ; ChemistryCommon.cfg numberofports = 10 ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.kloehnpumppullbruno.ftdivicivalve2.serialport] com_port_num = VICIA2 ; BrunoPilotChemPortNames.cfg cosmeticname = SerialPort A2 ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics1.pepriming] cosmeticname = PEPriming A ; PEPriming.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.flowcellfluidics1.pepriming.peprimingbypassvalve] cosmeticname = PE BypassValve A ; PEPriming.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.flowcellfluidics1.pepriming.peprimingpump] cosmeticname = PE PrimingPump A ; PEPriming.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.flowcellfluidics1.pepriming.peprimingwastevalve] cosmeticname = PE WasteValve A ; PEPriming.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.flowcellfluidics2.flextekfctmprchemboard] ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2.kloehnpumppullbruno] cosmeticname = KloehnPump B ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2.kloehnpumppullbruno.antisiphonshutoffvalve] cosmeticname = AntiSiphonShutoffValve B ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2.kloehnpumppullbruno.ftdivicivalve1] avoidposition = 7 ; ChemistryCommon.cfg cosmeticname = Valve B1 ; ChemistryCommon.cfg initialposition = 9 ; ChemistryCommon.cfg numberofports = 10 ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2.kloehnpumppullbruno.ftdivicivalve1.serialport] com_port_num = VICIB1 ; BrunoPilotChemPortNames.cfg cosmeticname = SerialPort B1 ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2.kloehnpumppullbruno.ftdivicivalve2] avoidposition = 0 ; ChemistryCommon.cfg cosmeticname = Valve B2 ; ChemistryCommon.cfg exists = true ; BrunoPilotChemPortNames.cfg initialposition = 1 ; ChemistryCommon.cfg numberofports = 10 ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2.kloehnpumppullbruno.ftdivicivalve2.serialport] com_port_num = VICIB2 ; BrunoPilotChemPortNames.cfg cosmeticname = SerialPort B2 ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2.kloehnpumppullbruno.kloehncontrollerpump] asyncdeliverydelay = false ; ChemistryCommon.cfg cosmeticname = KloehnPump B ; ChemistryCommon.cfg delayforsolution1 = 5000 ; HiSeq4000.cfg delayforsolution2 = 5000 ; HiSeq4000.cfg delayforsolution3 = 5000 ; HiSeq4000.cfg delayforsolution4 = 5000 ; HiSeq4000.cfg delayforsolution5 = 5000 ; HiSeq4000.cfg delayforsolution6 = 5000 ; HiSeq4000.cfg delayforsolution7 = 5000 ; HiSeq4000.cfg delayforsolution8 = 5000 ; HiSeq4000.cfg delayforsolution9 = 5000 ; HiSeq4000.cfg delayforsolution10 = 5000 ; HiSeq4000.cfg delayforsolution11 = 5000 ; HiSeq4000.cfg delayforsolution12 = 5000 ; HiSeq4000.cfg delayforsolution13 = 5000 ; HiSeq4000.cfg delayforsolution14 = 5000 ; HiSeq4000.cfg delayforsolution15 = 5000 ; HiSeq4000.cfg delayforsolution16 = 5000 ; HiSeq4000.cfg delayforsolution17 = 5000 ; HiSeq4000.cfg delayforsolution18 = 5000 ; HiSeq4000.cfg delayforsolution19 = 5000 ; HiSeq4000.cfg delayforsolution20 = 5000 ; HiSeq4000.cfg delayforsolution21 = 5000 ; HiSeq4000.cfg delayforsolution22 = 5000 ; HiSeq4000.cfg delayforsolution23 = 5000 ; HiSeq4000.cfg delayforsolution24 = 5000 ; HiSeq4000.cfg delayforsolution25 = 5000 ; HiSeq4000.cfg delayforsolution26 = 5000 ; HiSeq4000.cfg motionvariable_acceleration = 7 ; ChemistryCommon.cfg motionvariable_deceleration = 7 ; ChemistryCommon.cfg multiaspirate = false ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2.kloehnpumppullbruno.kloehncontrollerpump.kloehnserialport] com_port_num = KLOEHNB ; BrunoPilotChemPortNames.cfg cosmeticname = KloehnSerialPort B ; ChemistryCommon.cfg [scanner.chemistrymodule.flowcellfluidics2.pepriming] cosmeticname = PEPriming B ; PEPriming.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.flowcellfluidics2.pepriming.peprimingbypassvalve] cosmeticname = PE BypassValve B ; PEPriming.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.flowcellfluidics2.pepriming.peprimingpump] cosmeticname = PE PrimingPump B ; PEPriming.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.flowcellfluidics2.pepriming.peprimingwastevalve] cosmeticname = PE WasteValve B ; PEPriming.cfg simulated = false ; Override.cfg [scanner.chemistrymodule.spiwastevalvechemboard] ; ChemistryCommon.cfg [scanner.statuslights] ; BrunoLEDBars.cfg [scanner.statuslights.ledbars] ; BrunoLEDBars.cfg [scanner.statuslights.ledbars.ledbar1] ; BrunoLEDBars.cfg [scanner.statuslights.ledbars.ledbar2] ; BrunoLEDBars.cfg [secondorderdistortioncorrection] channelacoeffa = -3.21875E-07 ; Override.cfg channelacoeffb = 7E-07 ; Override.cfg channelacoeffc = 0 ; Override.cfg channelccoeffa = -3E-07 ; Override.cfg channelccoeffb = 5.125E-07 ; Override.cfg channelccoeffc = 0 ; Override.cfg channelgcoeffa = 5.875E-07 ; Override.cfg channelgcoeffb = -4.6875E-07 ; Override.cfg channelgcoeffc = 0 ; Override.cfg channeltcoeffa = 6.921875E-07 ; Override.cfg channeltcoeffb = 1.875E-08 ; Override.cfg channeltcoeffc = 0 ; Override.cfg [sequencing channel a] emissionposition = Bandpass2 ; BrunoCommon.cfg excitationposition = OD0.4 ; ExcitationFilter8Position.cfg laserpath = 2 ; BrunoCommon.cfg sensorpath = 1 ; BrunoCommon.cfg [sequencing channel c] emissionposition = Bandpass1 ; BrunoCommon.cfg excitationposition = OD0.4 ; ExcitationFilter8Position.cfg laserpath = 2 ; BrunoCommon.cfg sensorpath = 4 ; BrunoCommon.cfg [sequencing channel emissive] emissionposition = Bandpass2 ; HiSeq4000.cfg excitationposition = OD1.0 ; HiSeq4000.cfg laserpath = 2 ; HiSeq4000.cfg sensorpath = 1 ; HiSeq4000.cfg [sequencing channel g] emissionposition = Bandpass1 ; BrunoCommon.cfg excitationposition = OD0.4 ; ExcitationFilter8Position.cfg laserpath = 1 ; BrunoCommon.cfg sensorpath = 2 ; BrunoCommon.cfg [sequencing channel mfg bc emissive] emissionposition = Bandpass2 ; ExcitationFilter8Position.cfg excitationposition = OD1.0 ; ExcitationFilter8Position.cfg laserpath = 2 ; HiSeq4000.cfg sensorpath = 1 ; HiSeq4000.cfg [sequencing channel mfg bfc a] emissionposition = Bandpass2 ; ExcitationFilter8Position.cfg excitationposition = OD1.0 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 1 ; ExcitationFilter8Position.cfg [sequencing channel mfg bfc c] emissionposition = Bandpass1 ; ExcitationFilter8Position.cfg excitationposition = OD1.0 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 4 ; ExcitationFilter8Position.cfg [sequencing channel mfg bfc emissive] emissionposition = Bandpass2 ; HiSeq4000.cfg excitationposition = OD0.4 ; HiSeq4000.cfg laserpath = 2 ; HiSeq4000.cfg sensorpath = 1 ; HiSeq4000.cfg [sequencing channel mfg bfc g] emissionposition = Bandpass1 ; ExcitationFilter8Position.cfg excitationposition = OD0.4 ; HiSeq4000.cfg laserpath = 1 ; ExcitationFilter8Position.cfg sensorpath = 2 ; ExcitationFilter8Position.cfg [sequencing channel mfg bfc reflective] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD2.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 1 ; ExcitationFilter8Position.cfg [sequencing channel mfg bfc reflective a] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD2.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 1 ; ExcitationFilter8Position.cfg [sequencing channel mfg bfc reflective autocenter] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD1.0 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 1 ; ExcitationFilter8Position.cfg [sequencing channel mfg bfc reflective c] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD2.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 1 ; ExcitationFilter8Position.cfg [sequencing channel mfg bfc reflective g] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD2.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 1 ; ExcitationFilter8Position.cfg [sequencing channel mfg bfc reflective t] emissionposition = Open ; ExcitationFilter8Position.cfg excitationposition = OD2.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; ExcitationFilter8Position.cfg sensorpath = 1 ; ExcitationFilter8Position.cfg [sequencing channel mfg bfc t] emissionposition = Bandpass2 ; ExcitationFilter8Position.cfg excitationposition = OD0.4 ; HiSeq4000.cfg laserpath = 1 ; ExcitationFilter8Position.cfg sensorpath = 3 ; ExcitationFilter8Position.cfg [sequencing channel reflective] emissionposition = Open ; BrunoCommon.cfg excitationposition = OD2.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; HiSeq4000.cfg sensorpath = 1 ; HiSeq4000.cfg [sequencing channel reflective autocenter] emissionposition = Open ; StormCommon.cfg excitationposition = OD4.5 ; ExcitationFilter8Position.cfg laserpath = 2 ; StormCommon.cfg sensorpath = 1 ; StormCommon.cfg [sequencing channel t] emissionposition = Bandpass2 ; BrunoCommon.cfg excitationposition = OD0.4 ; ExcitationFilter8Position.cfg laserpath = 1 ; BrunoCommon.cfg sensorpath = 3 ; BrunoCommon.cfg [sequencing channels] channel1 = A ; BrunoCommon.cfg channel2 = G ; BrunoCommon.cfg channel3 = T ; BrunoCommon.cfg channel4 = C ; BrunoCommon.cfg [sequencing channels mfg bfc] channel1 = MFG BFC A ; ExcitationFilter8Position.cfg channel2 = MFG BFC G ; ExcitationFilter8Position.cfg channel3 = MFG BFC T ; ExcitationFilter8Position.cfg channel4 = MFG BFC C ; ExcitationFilter8Position.cfg [sequencing.518camera.bc.reflectivefocus] avgbrighttminimumintesitythreshold = 750 ; HiSeq4000.cfg exposuretimems = .5 ; HiSeq4000.cfg minimumfocusbrightness = 400 ; HiSeq4000.cfg roisize = 21 ; HiSeq4000.cfg zvelocity = 0.1 ; HiSeq4000.cfg [sequencingexcitationfilter1] homeoffsetsteps = 5 ; Override.cfg simulated = false ; Override.cfg [sequencingexcitationfilter2] homeoffsetsteps = -15 ; Override.cfg simulated = false ; Override.cfg [sequencinglaser1] laserpower = 542 ; Override.cfg simulated = false ; Override.cfg [sequencinglaser2] laserpower = 650 ; Override.cfg simulated = false ; Override.cfg [sippersensormonitor] active = false ; ChemistryCommon.cfg enablesipper1sensormonitoring = false ; ChemistryCommon.cfg enablesipper2sensormonitoring = false ; ChemistryCommon.cfg enablesipper3sensormonitoring = false ; ChemistryCommon.cfg [solenoidsensormonitor] active = false ; ChemistryCommon.cfg enablefcaantisiphonmonitoring = true ; ChemistryCommon.cfg enablefcbantisiphonmonitoring = true ; ChemistryCommon.cfg [spiwastevalvechemboard] ; ChemistryCommon.cfg [stagesafety] allowunsafestagemoves = false ; BrunoPilotCommon.cfg maxtiltheightsafeforhomingz = 3.0 ; BrunoPilotCommon.cfg undockedxpositiverange = 47 ; Override.cfg undockedxtolerance = 0.1 ; BrunoPilotCommon.cfg undockedypositiverange = -60 ; Override.cfg undockedytolerance = 0.01 ; BrunoPilotCommon.cfg undocksinxdirection = false ; BrunoPilotCommon.cfg [system] camerasensoroffset = 550 ; HiSeq4000.cfg disableandreenableports = false ; Scanner.cfg enablesaveimagesonerror = true ; HiSeq4000.cfg eventnotificationblockingthread = false ; Scanner.cfg excitationfiltersectionname = SequencingExcitationFilter ; BrunoCommon.cfg fastsimulation = true ; Scanner.cfg initial_led_mode = :::T ; Scanner.cfg initonstartup = true ; Scanner.cfg instrumenttype = HiSeq4000 ; Override.cfg lasersafetyenable = true ; BrunoPilotCommon.cfg maintenancelogsfolder = C:\Illumina Maintenance Logs ; HiSeq4000.cfg name = ST-K00104 ; Override.cfg numberofregistrationthreads = 8 ; Scanner.cfg numlaserpaths = 2 ; BrunoCommon.cfg numlaserpathsusage = Required ; Scanner.cfg numretries = 3 ; Scanner.cfg numsensorpaths = 4 ; BrunoCommon.cfg numsensorpathsusage = Required ; Scanner.cfg priorityclass = High ; BrunoCommon.cfg registrationthreadpriority = LOWEST ; Scanner.cfg scancounterfilepath = H:\ScanCounter.txt ; HiSeqControlSoftware.Hardware.cfg serialreceivercriticalpriority = false ; Scanner.cfg serialreceiverpollingthread = false ; Scanner.cfg traceiffnotsimulated = true ; Scanner.cfg transferspath = c:\Transfers ; BrunoCommon.cfg xyorientationtouser = 0 ; BrunoCommon.cfg [temperaturesensormonitor] active = false ; ChemistryCommon.cfg enableambientovertempmonitoring = true ; ChemistryCommon.cfg enablechilleropencircuitmonitoring = true ; ChemistryCommon.cfg enablechillerovertempmonitoring = true ; ChemistryCommon.cfg enablechillershortcircuitmonitoring = true ; ChemistryCommon.cfg enablefcaheatsinkopencircuitmonitoring = true ; ChemistryCommon.cfg enablefcaheatsinkovertempmonitoring = true ; ChemistryCommon.cfg enablefcaheatsinkshortcircuitmonitoring = true ; ChemistryCommon.cfg enablefcaopencircuitmonitoring = true ; ChemistryCommon.cfg enablefcaovertempmonitoring = true ; ChemistryCommon.cfg enablefcashortcircuitmonitoring = true ; ChemistryCommon.cfg enablefcbheatsinkopencircuitmonitoring = true ; ChemistryCommon.cfg enablefcbheatsinkovertempmonitoring = true ; ChemistryCommon.cfg enablefcbheatsinkshortcircuitmonitoring = true ; ChemistryCommon.cfg enablefcbopencircuitmonitoring = true ; ChemistryCommon.cfg enablefcbovertempmonitoring = true ; ChemistryCommon.cfg enablefcbshortcircuitmonitoring = true ; ChemistryCommon.cfg enablercaheatsinkopencircuitmonitoring = true ; ChemistryCommon.cfg enablercaheatsinkovertempmonitoring = true ; ChemistryCommon.cfg enablercaheatsinkshortcircuitmonitoring = true ; ChemistryCommon.cfg enablercaopencircuitmonitoring = true ; ChemistryCommon.cfg enablercaovertempmonitoring = true ; ChemistryCommon.cfg enablercashortcircuitmonitoring = true ; ChemistryCommon.cfg enablercbheatsinkopencircuitmonitoring = true ; ChemistryCommon.cfg enablercbheatsinkovertempmonitoring = true ; ChemistryCommon.cfg enablercbheatsinkshortcircuitmonitoring = true ; ChemistryCommon.cfg enablercbopencircuitmonitoring = true ; ChemistryCommon.cfg enablercbovertempmonitoring = true ; ChemistryCommon.cfg enablercbshortcircuitmonitoring = true ; ChemistryCommon.cfg [thirdorderdistortioncorrection] channelacoeffa = 1.519967E-09 ; Override.cfg channelacoeffb = -4.269441E-08 ; Override.cfg channelacoeffc = -2.887933E-05 ; Override.cfg channelccoeffa = 1.551217E-09 ; Override.cfg channelccoeffb = -9.894441E-08 ; Override.cfg channelccoeffc = -0.0001096606 ; Override.cfg channelgcoeffa = 1.613717E-09 ; Override.cfg channelgcoeffb = 3.230559E-08 ; Override.cfg channelgcoeffc = -0.0001563793 ; Override.cfg channeltcoeffa = 1.676217E-09 ; Override.cfg channeltcoeffb = 1.980558E-08 ; Override.cfg channeltcoeffc = -9.106682E-05 ; Override.cfg [tilt_motor_locations] nominaltilt1 = 4.5 ; BrunoCommon.cfg nominaltilt2 = 4.5 ; BrunoCommon.cfg nominaltilt3 = 4.5 ; BrunoCommon.cfg tilt1x = 130 ; BrunoCommon.cfg tilt1y = 89.59 ; BrunoCommon.cfg tilt2xdelta = -170 ; BrunoCommon.cfg tilt2ydelta = 50 ; BrunoCommon.cfg tilt3xdelta = -170 ; BrunoCommon.cfg tilt3ydelta = -70 ; BrunoCommon.cfg [tiltmotor] cosmeticname = Tilt Motor # ; Scanner.cfg driverconfigname = TiltMotor_FPGATilt ; TiltMotor_FPGATilt.cfg simulated = false ; Override.cfg tiltmotorsoftlimitrange_mm = 0.8 ; Scanner.cfg [tiltmotor_fpgatilt] accel_mm_sec2 = 1 ; TiltMotor_FPGATilt.cfg accelcontrolunitspermm2 = 32 ; TiltMotor_FPGATilt.cfg after_stop_delay_ms = 0 ; TiltMotor_FPGATilt.cfg after_stop_tolerance_mm = 0.01 ; TiltMotor_FPGATilt.cfg applicationmaxvelocitymmpersec = 0.5 ; TiltMotor_FPGATilt.cfg applicationminvelocitymmpersec = 0 ; TiltMotor_FPGATilt.cfg backlash_mm = 0.1 ; TiltMotor_FPGATilt.cfg backlashcorrectionmm = 0 ; TiltMotor_FPGATilt.cfg controllermaxvelocitycontrolunitspersec = 65535 ; TiltMotor_FPGATilt.cfg controllerminvelocitycontrolunitspersec = 1 ; TiltMotor_FPGATilt.cfg currentpercent = 35 ; BrunoCommon.cfg defaultmotortimeoutms = 60000 ; TiltMotor_FPGATilt.cfg extra_motion_timeout_ms = 60000 ; TiltMotor_FPGATilt.cfg home_accel = 3 ; TiltMotor_FPGATilt.cfg home_steps_per_unit = 1 ; TiltMotor_FPGATilt.cfg home_tolerance = 0.1 ; TiltMotor_FPGATilt.cfg home_velocity = 0.5 ; TiltMotor_FPGATilt.cfg homingtimeoutms = 60000 ; TiltMotor_FPGATilt.cfg magnetunderobjectivepositionmm = 0 ; TiltMotor_FPGATilt.cfg max_accel_mm_sec2 = 10 ; TiltMotor_FPGATilt.cfg max_tolerance_mm = 0.2 ; TiltMotor_FPGATilt.cfg maxburnindutycycle = 100 ; TiltMotor_FPGATilt.cfg maxhomeattempts = 5 ; TiltMotor_FPGATilt.cfg min_accel_mm_sec2 = 0.1 ; TiltMotor_FPGATilt.cfg min_tolerance_mm = 0.001 ; TiltMotor_FPGATilt.cfg neg_limit_mm = 0.0 ; TiltMotor_FPGATilt.cfg numretries = 10 ; TiltMotor_FPGATilt.cfg pos_limit_mm = 15 ; TiltMotor_FPGATilt.cfg positionpollinginterval = 0 ; TiltMotor_FPGATilt.cfg reversedirection = false ; TiltMotor_FPGATilt.cfg statuspollinginterval = 50 ; TiltMotor_FPGATilt.cfg steps_per_mm = 656.16797900262467191601049868766 ; TiltMotor_FPGATilt.cfg tolerance_mm = 0.1 ; TiltMotor_FPGATilt.cfg useencoder = true ; TiltMotor_FPGATilt.cfg velocity_mm_sec = 0.5 ; TiltMotor_FPGATilt.cfg velocitycontrolunitspermm = 32 ; TiltMotor_FPGATilt.cfg velocitygranularitycontrolunitspersec = 1 ; TiltMotor_FPGATilt.cfg [tiltmotor1] ; Scanner.cfg [tiltmotor2] ; Scanner.cfg [tiltmotor3] ; Scanner.cfg [tray] exists = false ; Scanner.cfg [user_notification] level = 1 ; Scanner.cfg type = Warning ; Scanner.cfg [user_notification illumina.instrument.archimedes.logic.commands.aligncommand.brokenbundlewarning] level = 1 ; Scanner.cfg type = Warning ; Scanner.cfg [user_notification illumina.instrument.archimedes.logic.commands.reflectiveautocentercommand.orthogonalitywarning] level = 1 ; Scanner.cfg type = Warning ; Scanner.cfg [user_notification illumina.instrument.archimedes.logic.scan.pathspecifierimpl.fileiohasgoneofflinewarning] level = 1 ; Scanner.cfg type = Information ; Scanner.cfg [user_notification illumina.instrument.archimedes.logic.scan.pathspecifierimpl.networkhasrecoveredwarning] level = 1 ; Scanner.cfg type = Information ; Scanner.cfg [vacuumsensormonitor] active = true ; ChemistryCommon.cfg enablefcahwfailuremonitoring = true ; ChemistryCommon.cfg enablefcapoppedmonitoring = true ; ChemistryCommon.cfg enablefcbhwfailuremonitoring = true ; ChemistryCommon.cfg enablefcbpoppedmonitoring = true ; ChemistryCommon.cfg maintenancelogeverypoll = false ; ChemistryCommon.cfg numconsecutivepollsbeforehwfailurewarning = 5 ; ChemistryCommon.cfg [washnaoh] aspiraterate = 250 ; ChemistryCommon.cfg dispenserate = 2500 ; ChemistryCommon.cfg volume = 250 ; ChemistryCommon.cfg [washpr1] aspiraterate = 120 ; ChemistryCommon.cfg dispenserate = 2500 ; ChemistryCommon.cfg volume = 500 ; ChemistryCommon.cfg [xmotor] cosmeticname = X Motor ; Scanner.cfg driverconfigname = XMotor_MDrive_5mm ; XMotor_MDrive_5mm.cfg simulated = false ; Override.cfg [xmotor_mdrive_5mm] accel_mm_sec2 = 40 ; XMotor_MDrive_5mm.cfg accelcontrolunitspermm2 = 409.6 ; XMotor_MDrive_5mm.cfg after_stop_delay_ms = 0 ; XMotor_MDrive_5mm.cfg after_stop_tolerance_mm = 0.007 ; XMotor_MDrive_5mm.cfg applicationmaxvelocitymmpersec = 50 ; XMotor_MDrive_5mm.cfg applicationminvelocitymmpersec = 0 ; XMotor_MDrive_5mm.cfg backlash_mm = 0 ; XMotor_MDrive_5mm.cfg backlashcorrectionmm = 0 ; XMotor_MDrive_5mm.cfg baud_rate = 9600 ; XMotor_MDrive_5mm.cfg closedloopencoder = true ; XMotor_MDrive_5mm.cfg com_port_num = IL000001 ; XMotor_MDrive_5mm.cfg controllermaxvelocitycontrolunitspersec = 200000 ; XMotor_MDrive_5mm.cfg controllerminvelocitycontrolunitspersec = 1 ; XMotor_MDrive_5mm.cfg defaultmotortimeoutms = 60000 ; XMotor_MDrive_5mm.cfg delaymsaftereachline = 100 ; XMotor_MDrive_5mm.cfg extra_motion_timeout_ms = 60000 ; XMotor_MDrive_5mm.cfg handshake = none ; XMotor_MDrive_5mm.cfg home_accel = 10 ; XMotor_MDrive_5mm.cfg home_steps_per_unit = 1000 ; XMotor_MDrive_5mm.cfg home_tolerance = 1 ; XMotor_MDrive_5mm.cfg home_velocity = 10 ; XMotor_MDrive_5mm.cfg homecmd = EX 1 ; XMotor_MDrive_5mm.cfg homestartsnearnegativelimit = true ; BrunoCommon.cfg homingtimeoutms = 60000 ; XMotor_MDrive_5mm.cfg idlevelocitynativeunits = 1 ; XMotor_MDrive_5mm.cfg initcmd1 = EE = 1 ; XMotor_MDrive_5mm.cfg initcmd2 = VI = 1 ; XMotor_MDrive_5mm.cfg initcmd3 = VM = 30720 ; XMotor_MDrive_5mm.cfg initcmd4 = VI = 40 ; XMotor_MDrive_5mm.cfg initcmd5 = A = 40000 ; XMotor_MDrive_5mm.cfg initcmd6 = D = A ; XMotor_MDrive_5mm.cfg initcmd7 = HC = 20 ; XMotor_MDrive_5mm.cfg initcmd8 = RC = 100 ; XMotor_MDrive_5mm.cfg initcmd9 = MT = 100 ; XMotor_MDrive_5mm.cfg initcmd10 = SM = 0 ; XMotor_MDrive_5mm.cfg initcmd11 = SF = 15 ; XMotor_MDrive_5mm.cfg initcmd12 = DB = 8 ; XMotor_MDrive_5mm.cfg initcmd13 = LM = 1 ; XMotor_MDrive_5mm.cfg initcmd14 = S1 = 1,0,0 ; XMotor_MDrive_5mm.cfg initcmd15 = S2 = 3,1,0 ; XMotor_MDrive_5mm.cfg initcmd16 = S3 = 2,1,0 ; XMotor_MDrive_5mm.cfg initcmd17 = S4 = 0,0,0 ; XMotor_MDrive_5mm.cfg initcmd18 = D1 = 5 ; XMotor_MDrive_5mm.cfg magnetunderobjectivepositionmm = 0 ; XMotor_MDrive_5mm.cfg max_accel_mm_sec2 = 50 ; XMotor_MDrive_5mm.cfg max_tolerance_mm = 20 ; XMotor_MDrive_5mm.cfg maxburnindutycycle = 100 ; XMotor_MDrive_5mm.cfg min_accel_mm_sec2 = 0.1 ; XMotor_MDrive_5mm.cfg min_tolerance_mm = 0.01 ; XMotor_MDrive_5mm.cfg neg_limit_mm = -59 ; Override.cfg numinitcmds = 18 ; XMotor_MDrive_5mm.cfg numprogramlines = 13 ; XMotor_MDrive_5mm.cfg numretries = 10 ; XMotor_MDrive_5mm.cfg pos_limit_mm = 36 ; Override.cfg positionpollinginterval = 0 ; XMotor_MDrive_5mm.cfg positiverange = true ; XMotor_MDrive_5mm.cfg preferredinitialvelocity = 1 ; XMotor_MDrive_5mm.cfg programline1 = PG 1 ; XMotor_MDrive_5mm.cfg programline2 = LB G2 ; XMotor_MDrive_5mm.cfg programline3 = PM = 0 ; XMotor_MDrive_5mm.cfg programline4 = PR "C1 ", C1 ; XMotor_MDrive_5mm.cfg programline5 = PR "C2 ", C2 ; XMotor_MDrive_5mm.cfg programline6 = H 50 ; XMotor_MDrive_5mm.cfg programline7 = HM 1 ; XMotor_MDrive_5mm.cfg programline8 = H ; XMotor_MDrive_5mm.cfg programline9 = PR "Homed at ", P ; XMotor_MDrive_5mm.cfg programline10 = P = 0 ; XMotor_MDrive_5mm.cfg programline11 = PR "Homed OK" ; XMotor_MDrive_5mm.cfg programline12 = E ; XMotor_MDrive_5mm.cfg programline13 = PG ; XMotor_MDrive_5mm.cfg receiverpollingintervalms = 50 ; XMotor_MDrive_5mm.cfg reversedirection = false ; XMotor_MDrive_5mm.cfg statuspollinginterval = 50 ; XMotor_MDrive_5mm.cfg steps_per_mm = 409.6 ; XMotor_MDrive_5mm.cfg tolerance_mm = 20 ; XMotor_MDrive_5mm.cfg velocity_mm_sec = 15 ; XMotor_MDrive_5mm.cfg velocitycontrolunitspermm = 409.6 ; XMotor_MDrive_5mm.cfg velocitygranularitycontrolunitspersec = 1 ; XMotor_MDrive_5mm.cfg [ymotor] cosmeticname = Y Motor ; Scanner.cfg driverconfigname = YMotor_CopleyServo ; YMotor_CopleyServo.cfg simulated = false ; Override.cfg [ymotor_copleyservo] accel_mm_sec2 = 100 ; YMotor_CopleyServo.cfg accelcontrolunitspermm2 = 10000 ; YMotor_CopleyServo.cfg after_stop_delay_ms = 0 ; YMotor_CopleyServo.cfg after_stop_tolerance_mm = 0.0035 ; YMotor_CopleyServo.cfg applicationmaxvelocitymmpersec = 25 ; YMotor_CopleyServo.cfg applicationminvelocitymmpersec = 0 ; YMotor_CopleyServo.cfg backlash_mm = 0 ; YMotor_CopleyServo.cfg backlashcorrectionmm = 0 ; YMotor_CopleyServo.cfg baud_rate = 9600 ; YMotor_CopleyServo.cfg closedloopencoder = true ; YMotor_CopleyServo.cfg com_port_num = IL000002 ; YMotor_CopleyServo.cfg controllermaxvelocitycontrolunitspersec = 25000000 ; YMotor_CopleyServo.cfg controllerminvelocitycontrolunitspersec = 1 ; YMotor_CopleyServo.cfg debuglimitsensors = false ; YMotor_CopleyServo.cfg defaultmotortimeoutms = 60000 ; YMotor_CopleyServo.cfg delaymsaftereachline = 0 ; YMotor_CopleyServo.cfg extra_motion_timeout_ms = 60000 ; YMotor_CopleyServo.cfg extratimeoutmsforerrorresponse = 10000 ; YMotor_CopleyServo.cfg fastmovegainderivative_gv = 1.5 ; YMotor_CopleyServo.cfg fastmovegainfeedforward_gf = 5 ; YMotor_CopleyServo.cfg fastmovegainintegral_gi = 10 ; YMotor_CopleyServo.cfg fastmovegainproportional_gp = 7 ; YMotor_CopleyServo.cfg handshake = none ; YMotor_CopleyServo.cfg home_accel = 2500 ; YMotor_CopleyServo.cfg home_slow_velocity = 1 ; YMotor_CopleyServo.cfg home_steps_per_unit = 1 ; YMotor_CopleyServo.cfg home_tolerance = 100 ; YMotor_CopleyServo.cfg home_velocity = 25 ; YMotor_CopleyServo.cfg homecmd = "Home" ; YMotor_CopleyServo.cfg homestartsnearnegativelimit = false ; YMotor_CopleyServo.cfg homingtimeoutms = 60000 ; YMotor_CopleyServo.cfg idlevelocitynativeunits = 0 ; YMotor_CopleyServo.cfg jerkrate = 75 ; YMotor_CopleyServo.cfg magnetunderobjectivepositionmm = 0 ; YMotor_CopleyServo.cfg max_accel_mm_sec2 = 650 ; YMotor_CopleyServo.cfg max_tolerance_mm = 500 ; YMotor_CopleyServo.cfg maxburnindutycycle = 100 ; YMotor_CopleyServo.cfg min_accel_mm_sec2 = 0.13 ; YMotor_CopleyServo.cfg min_tolerance_mm = 0.0001 ; YMotor_CopleyServo.cfg neg_limit_mm = -5 ; HiSeq4000.cfg numhomeattempts = 5 ; YMotor_CopleyServo.cfg numretries = 2 ; YMotor_CopleyServo.cfg pos_limit_mm = 73 ; Override.cfg positionpollinginterval = 0 ; YMotor_CopleyServo.cfg positiverange = false ; YMotor_CopleyServo.cfg powercycledelay = 5000 ; YMotor_CopleyServo.cfg powercycleenable = true ; YMotor_CopleyServo.cfg preferredinitialvelocity = 18 ; YMotor_CopleyServo.cfg receiverpollingintervalms = 50 ; YMotor_CopleyServo.cfg resetamplifierbeforeinit = true ; YMotor_CopleyServo.cfg resetorigindelayms = 100 ; YMotor_CopleyServo.cfg reversedirection = false ; YMotor_CopleyServo.cfg scanninggainderivative_gv = 2 ; YMotor_CopleyServo.cfg scanninggainfeedforward_gf = 5 ; YMotor_CopleyServo.cfg scanninggainintegral_gi = 10 ; YMotor_CopleyServo.cfg scanninggainproportional_gp = 5 ; YMotor_CopleyServo.cfg statuspollinginterval = 50 ; YMotor_CopleyServo.cfg steps_per_mm = 100000 ; YMotor_CopleyServo.cfg tolerance_mm = 0.002 ; YMotor_CopleyServo.cfg velocity_mm_sec = 25 ; YMotor_CopleyServo.cfg velocitycontrolunitspermm = 1000000 ; YMotor_CopleyServo.cfg velocitygranularitycontrolunitspersec = 1 ; YMotor_CopleyServo.cfg vixmotortype = MT49420 ; YMotor_CopleyServo.cfg vixuseencoder = true ; YMotor_CopleyServo.cfg [ymotor_vixservoih_10nm] accel_mm_sec2 = 50 ; YMotor_VixServoIH_10nm.cfg accelcontrolunitspermm2 = 0.0769 ; YMotor_VixServoIH_10nm.cfg after_stop_delay_ms = 0 ; YMotor_VixServoIH_10nm.cfg after_stop_tolerance_mm = 0.0035 ; YMotor_VixServoIH_10nm.cfg applicationmaxvelocitymmpersec = 25 ; YMotor_VixServoIH_10nm.cfg applicationminvelocitymmpersec = 0 ; YMotor_VixServoIH_10nm.cfg backlash_mm = 0 ; YMotor_VixServoIH_10nm.cfg backlashcorrectionmm = 0 ; YMotor_VixServoIH_10nm.cfg baud_rate = 9600 ; YMotor_VixServoIH_10nm.cfg com_port_num = IL000002 ; YMotor_VixServoIH_10nm.cfg controllermaxvelocitycontrolunitspersec = 5000.0 ; YMotor_VixServoIH_10nm.cfg controllerminvelocitycontrolunitspersec = 0.001 ; YMotor_VixServoIH_10nm.cfg debuglimitsensors = false ; YMotor_VixServoIH_10nm.cfg defaultmotortimeoutms = 60000 ; YMotor_VixServoIH_10nm.cfg extra_motion_timeout_ms = 60000 ; YMotor_VixServoIH_10nm.cfg extratimeoutmsforerrorresponse = 10000 ; YMotor_VixServoIH_10nm.cfg fastmovegainderivative_gv = 1.5 ; YMotor_VixServoIH_10nm.cfg fastmovegainfeedforward_gf = 5 ; YMotor_VixServoIH_10nm.cfg fastmovegainintegral_gi = 10 ; YMotor_VixServoIH_10nm.cfg fastmovegainproportional_gp = 7 ; YMotor_VixServoIH_10nm.cfg handshake = none ; YMotor_VixServoIH_10nm.cfg home_accel = 10 ; YMotor_VixServoIH_10nm.cfg home_steps_per_unit = 1 ; YMotor_VixServoIH_10nm.cfg home_tolerance = 100 ; YMotor_VixServoIH_10nm.cfg home_velocity = 0.1 ; YMotor_VixServoIH_10nm.cfg homingtimeoutms = 60000 ; YMotor_VixServoIH_10nm.cfg magnetunderobjectivepositionmm = 0 ; YMotor_VixServoIH_10nm.cfg max_accel_mm_sec2 = 650 ; YMotor_VixServoIH_10nm.cfg max_tolerance_mm = 500 ; YMotor_VixServoIH_10nm.cfg maxburnindutycycle = 100 ; YMotor_VixServoIH_10nm.cfg min_accel_mm_sec2 = 0.13 ; YMotor_VixServoIH_10nm.cfg min_tolerance_mm = 0.0001 ; YMotor_VixServoIH_10nm.cfg neg_limit_mm = -60 ; BrunoCommon.cfg numprogramlines = 228 ; YMotor_VixServoIH_10nm.cfg numretries = 10 ; YMotor_VixServoIH_10nm.cfg pos_limit_mm = 68 ; BrunoCommon.cfg positionpollinginterval = 0 ; YMotor_VixServoIH_10nm.cfg positiverange = true ; YMotor_VixServoIH_10nm.cfg powercycledelay = 5000 ; YMotor_VixServoIH_10nm.cfg powercycleenable = true ; YMotor_VixServoIH_10nm.cfg programline1 = ; YMotor_VixServoIH_10nm.cfg programline2 = 1START: ; YMotor_VixServoIH_10nm.cfg programline3 = 1DECLARE(OK) ; YMotor_VixServoIH_10nm.cfg programline4 = 1DECLARE(INIT) ; YMotor_VixServoIH_10nm.cfg programline5 = 1DECLARE(DIAG) ; YMotor_VixServoIH_10nm.cfg programline6 = 1DECLARE(UF13A) ; YMotor_VixServoIH_10nm.cfg programline7 = 1DECLARE(UF13B) ; YMotor_VixServoIH_10nm.cfg programline8 = ; YMotor_VixServoIH_10nm.cfg programline9 = ; YMotor_VixServoIH_10nm.cfg programline10 = ; YMotor_VixServoIH_10nm.cfg programline11 = ; YMotor_VixServoIH_10nm.cfg programline12 = 1O(1XX) ; YMotor_VixServoIH_10nm.cfg programline13 = 1END ; YMotor_VixServoIH_10nm.cfg programline14 = ; YMotor_VixServoIH_10nm.cfg programline15 = 1FAULT: ; YMotor_VixServoIH_10nm.cfg programline16 = 1O(0XX) ; YMotor_VixServoIH_10nm.cfg programline17 = ; YMotor_VixServoIH_10nm.cfg programline18 = 1GOSUB(DIAG) ; YMotor_VixServoIH_10nm.cfg programline19 = 1END ; YMotor_VixServoIH_10nm.cfg programline20 = ; YMotor_VixServoIH_10nm.cfg programline21 = ; YMotor_VixServoIH_10nm.cfg programline22 = 1OK: ; YMotor_VixServoIH_10nm.cfg programline23 = 1"*OK" ; YMotor_VixServoIH_10nm.cfg programline24 = 1END ; YMotor_VixServoIH_10nm.cfg programline25 = ; YMotor_VixServoIH_10nm.cfg programline26 = ; YMotor_VixServoIH_10nm.cfg programline27 = 1INIT: ; YMotor_VixServoIH_10nm.cfg programline28 = 1OFF ; YMotor_VixServoIH_10nm.cfg programline29 = ; YMotor_VixServoIH_10nm.cfg programline30 = 1W(AO,0) ; YMotor_VixServoIH_10nm.cfg programline31 = 1W(AB,0) ; YMotor_VixServoIH_10nm.cfg programline32 = ; YMotor_VixServoIH_10nm.cfg programline33 = 1W(AM,0) ; YMotor_VixServoIH_10nm.cfg programline34 = ; YMotor_VixServoIH_10nm.cfg programline35 = 1W(EX,2) ; YMotor_VixServoIH_10nm.cfg programline36 = 1W(EQ,0) ; YMotor_VixServoIH_10nm.cfg programline37 = 1W(BR,9600) ; YMotor_VixServoIH_10nm.cfg programline38 = ; YMotor_VixServoIH_10nm.cfg programline39 = 1W(CL,100) ; YMotor_VixServoIH_10nm.cfg programline40 = ; YMotor_VixServoIH_10nm.cfg programline41 = 1W(CQ,1) ; YMotor_VixServoIH_10nm.cfg programline42 = ; YMotor_VixServoIH_10nm.cfg programline43 = 1W(IC,7967) ; YMotor_VixServoIH_10nm.cfg programline44 = 1W(EI,2) ; YMotor_VixServoIH_10nm.cfg programline45 = 1W(EO,2) ; YMotor_VixServoIH_10nm.cfg programline46 = 1LIMITS(0,1,0,1000.0) ; YMotor_VixServoIH_10nm.cfg programline47 = ; YMotor_VixServoIH_10nm.cfg programline48 = ; YMotor_VixServoIH_10nm.cfg programline49 = 1HOME1(-,0,+0.4,0.1,3) ; YMotor_VixServoIH_10nm.cfg programline50 = 1W(HF,0.1) ; YMotor_VixServoIH_10nm.cfg programline51 = ; YMotor_VixServoIH_10nm.cfg programline52 = 1W(EW,2500) ; YMotor_VixServoIH_10nm.cfg programline53 = 1W(IT,100) ; YMotor_VixServoIH_10nm.cfg programline54 = ; YMotor_VixServoIH_10nm.cfg programline55 = ; YMotor_VixServoIH_10nm.cfg programline56 = ; YMotor_VixServoIH_10nm.cfg programline57 = ; YMotor_VixServoIH_10nm.cfg programline58 = ; YMotor_VixServoIH_10nm.cfg programline59 = 1W(IM,1) ; YMotor_VixServoIH_10nm.cfg programline60 = 1W(IW,10000) ; YMotor_VixServoIH_10nm.cfg programline61 = ; YMotor_VixServoIH_10nm.cfg programline62 = 1W(ES,1) ; YMotor_VixServoIH_10nm.cfg programline63 = ; YMotor_VixServoIH_10nm.cfg programline64 = ; YMotor_VixServoIH_10nm.cfg programline65 = 1MOTOR(49420,1.6,1300000,138,80,4.75,1.8,4.5) ; YMotor_VixServoIH_10nm.cfg programline66 = 1W(PC,300) ; YMotor_VixServoIH_10nm.cfg programline67 = 1W(TL,65536) ; YMotor_VixServoIH_10nm.cfg programline68 = ; YMotor_VixServoIH_10nm.cfg programline69 = 1GOSUB(OK) ; YMotor_VixServoIH_10nm.cfg programline70 = 1END ; YMotor_VixServoIH_10nm.cfg programline71 = ; YMotor_VixServoIH_10nm.cfg programline72 = ; YMotor_VixServoIH_10nm.cfg programline73 = 1DIAG: ; YMotor_VixServoIH_10nm.cfg programline74 = 1IF(DF1,=,1XXXXXXX) ; YMotor_VixServoIH_10nm.cfg programline75 = 1"!DF1" ; YMotor_VixServoIH_10nm.cfg programline76 = 1IF(DF1,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline77 = 1"!DF2 -15V" ; YMotor_VixServoIH_10nm.cfg programline78 = 1IF(DF1,=,XX1XXXXX) ; YMotor_VixServoIH_10nm.cfg programline79 = 1"!DF3 HVlo" ; YMotor_VixServoIH_10nm.cfg programline80 = 1IF(DF1,=,XXX1XXXX) ; YMotor_VixServoIH_10nm.cfg programline81 = 1"!DF4 HVhi" ; YMotor_VixServoIH_10nm.cfg programline82 = ; YMotor_VixServoIH_10nm.cfg programline83 = ; YMotor_VixServoIH_10nm.cfg programline84 = 1IF(DF1,=,XXXXX1XX) ; YMotor_VixServoIH_10nm.cfg programline85 = 1"!DF6" ; YMotor_VixServoIH_10nm.cfg programline86 = 1IF(DF1,=,XXXXXX1X) ; YMotor_VixServoIH_10nm.cfg programline87 = 1"!DF7" ; YMotor_VixServoIH_10nm.cfg programline88 = 1IF(DF1,=,XXXXXXX1) ; YMotor_VixServoIH_10nm.cfg programline89 = 1"!DF8" ; YMotor_VixServoIH_10nm.cfg programline90 = 1IF(DF2,=,1XXXXXXX) ; YMotor_VixServoIH_10nm.cfg programline91 = 1"!DF9" ; YMotor_VixServoIH_10nm.cfg programline92 = 1IF(DF2,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline93 = 1"!DF10" ; YMotor_VixServoIH_10nm.cfg programline94 = 1IF(DF2,=,XX1XXXXX) ; YMotor_VixServoIH_10nm.cfg programline95 = 1"!DF11" ; YMotor_VixServoIH_10nm.cfg programline96 = 1IF(DF2,=,XXX1XXXX) ; YMotor_VixServoIH_10nm.cfg programline97 = 1"!DF12" ; YMotor_VixServoIH_10nm.cfg programline98 = 1IF(DF2,=,XXXX1XXX) ; YMotor_VixServoIH_10nm.cfg programline99 = 1"!DF13" ; YMotor_VixServoIH_10nm.cfg programline100 = 1IF(DF2,=,XXXXX1XX) ; YMotor_VixServoIH_10nm.cfg programline101 = 1"!DF14" ; YMotor_VixServoIH_10nm.cfg programline102 = 1IF(DF2,=,XXXXXX1X) ; YMotor_VixServoIH_10nm.cfg programline103 = 1"!DF15" ; YMotor_VixServoIH_10nm.cfg programline104 = 1IF(DF2,=,XXXXXXX1) ; YMotor_VixServoIH_10nm.cfg programline105 = 1"!DF16" ; YMotor_VixServoIH_10nm.cfg programline106 = 1IF(DF3,=,1XXXXXXX) ; YMotor_VixServoIH_10nm.cfg programline107 = 1"!DF17 StgCur" ; YMotor_VixServoIH_10nm.cfg programline108 = 1IF(DF3,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline109 = 1"!DF18 DrvCur" ; YMotor_VixServoIH_10nm.cfg programline110 = 1IF(DF3,=,XX1XXXXX) ; YMotor_VixServoIH_10nm.cfg programline111 = 1"!DF19 Trk" ; YMotor_VixServoIH_10nm.cfg programline112 = 1IF(DF3,=,XXX1XXXX) ; YMotor_VixServoIH_10nm.cfg programline113 = 1"!DF20 Vel" ; YMotor_VixServoIH_10nm.cfg programline114 = 1IF(DF3,=,XXXX1XXX) ; YMotor_VixServoIH_10nm.cfg programline115 = 1"!DF21" ; YMotor_VixServoIH_10nm.cfg programline116 = ; YMotor_VixServoIH_10nm.cfg programline117 = ; YMotor_VixServoIH_10nm.cfg programline118 = ; YMotor_VixServoIH_10nm.cfg programline119 = ; YMotor_VixServoIH_10nm.cfg programline120 = ; YMotor_VixServoIH_10nm.cfg programline121 = ; YMotor_VixServoIH_10nm.cfg programline122 = 1IF(DF4,=,1XXXXXXX) ; YMotor_VixServoIH_10nm.cfg programline123 = 1"!DF25" ; YMotor_VixServoIH_10nm.cfg programline124 = 1IF(DF4,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline125 = ; YMotor_VixServoIH_10nm.cfg programline126 = ; YMotor_VixServoIH_10nm.cfg programline127 = ; YMotor_VixServoIH_10nm.cfg programline128 = ; YMotor_VixServoIH_10nm.cfg programline129 = ; YMotor_VixServoIH_10nm.cfg programline130 = ; YMotor_VixServoIH_10nm.cfg programline131 = ; YMotor_VixServoIH_10nm.cfg programline132 = ; YMotor_VixServoIH_10nm.cfg programline133 = ; YMotor_VixServoIH_10nm.cfg programline134 = ; YMotor_VixServoIH_10nm.cfg programline135 = ; YMotor_VixServoIH_10nm.cfg programline136 = ; YMotor_VixServoIH_10nm.cfg programline137 = ; YMotor_VixServoIH_10nm.cfg programline138 = ; YMotor_VixServoIH_10nm.cfg programline139 = 1GOSUB(UF13A) ; YMotor_VixServoIH_10nm.cfg programline140 = ; YMotor_VixServoIH_10nm.cfg programline141 = ; YMotor_VixServoIH_10nm.cfg programline142 = 1IF(UF1,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline143 = 1"!UF2 Syntax" ; YMotor_VixServoIH_10nm.cfg programline144 = 1IF(UF1,=,XX1XXXXX) ; YMotor_VixServoIH_10nm.cfg programline145 = 1"!UF3 DupLabel" ; YMotor_VixServoIH_10nm.cfg programline146 = 1IF(UF1,=,XXX1XXXX) ; YMotor_VixServoIH_10nm.cfg programline147 = 1"!UF4 LabelUndef" ; YMotor_VixServoIH_10nm.cfg programline148 = 1IF(UF1,=,XXXX1XXX) ; YMotor_VixServoIH_10nm.cfg programline149 = 1"!UF5 NoZ" ; YMotor_VixServoIH_10nm.cfg programline150 = 1IF(UF1,=,XXXXX1XX) ; YMotor_VixServoIH_10nm.cfg programline151 = 1"!UF6 NoHome" ; YMotor_VixServoIH_10nm.cfg programline152 = 1IF(UF1,=,XXXXXX1X) ; YMotor_VixServoIH_10nm.cfg programline153 = 1"!UF7 NarrowHome" ; YMotor_VixServoIH_10nm.cfg programline154 = 1IF(UF1,=,XXXXXXX1) ; YMotor_VixServoIH_10nm.cfg programline155 = 1"!UF8 DrvOff" ; YMotor_VixServoIH_10nm.cfg programline156 = 1IF(UF2,=,1XXXXXXX) ; YMotor_VixServoIH_10nm.cfg programline157 = 1"!UF9 EndWhat" ; YMotor_VixServoIH_10nm.cfg programline158 = 1IF(UF2,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline159 = 1"!UF10 MemFull" ; YMotor_VixServoIH_10nm.cfg programline160 = 1IF(UF2,=,XX1XXXXX) ; YMotor_VixServoIH_10nm.cfg programline161 = 1"!UF11 Profs" ; YMotor_VixServoIH_10nm.cfg programline162 = 1IF(UF2,=,XXX1XXXX) ; YMotor_VixServoIH_10nm.cfg programline163 = 1"!UF12 Labels" ; YMotor_VixServoIH_10nm.cfg programline164 = ; YMotor_VixServoIH_10nm.cfg programline165 = ; YMotor_VixServoIH_10nm.cfg programline166 = 1IF(UF2,=,XXXXX1XX) ; YMotor_VixServoIH_10nm.cfg programline167 = 1"!UF14 Moving" ; YMotor_VixServoIH_10nm.cfg programline168 = ; YMotor_VixServoIH_10nm.cfg programline169 = ; YMotor_VixServoIH_10nm.cfg programline170 = 1IF(UF2,=,XXXXXXX1) ; YMotor_VixServoIH_10nm.cfg programline171 = 1"!UF16 XmitOvf" ; YMotor_VixServoIH_10nm.cfg programline172 = 1IF(UF3,=,1XXXXXXX) ; YMotor_VixServoIH_10nm.cfg programline173 = 1"!UF17 Nesting" ; YMotor_VixServoIH_10nm.cfg programline174 = 1IF(UF3,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline175 = 1"!UF18 UnkProfile" ; YMotor_VixServoIH_10nm.cfg programline176 = 1IF(UF3,=,XX1XXXXX) ; YMotor_VixServoIH_10nm.cfg programline177 = 1"!UF19 DrvNotRdy" ; YMotor_VixServoIH_10nm.cfg programline178 = ; YMotor_VixServoIH_10nm.cfg programline179 = ; YMotor_VixServoIH_10nm.cfg programline180 = ; YMotor_VixServoIH_10nm.cfg programline181 = ; YMotor_VixServoIH_10nm.cfg programline182 = 1IF(UF3,=,XXXXX1XX) ; YMotor_VixServoIH_10nm.cfg programline183 = 1"!UF22" ; YMotor_VixServoIH_10nm.cfg programline184 = 1IF(UF3,=,XXXXXX1X) ; YMotor_VixServoIH_10nm.cfg programline185 = 1"!UF23 BadCmd" ; YMotor_VixServoIH_10nm.cfg programline186 = ; YMotor_VixServoIH_10nm.cfg programline187 = ; YMotor_VixServoIH_10nm.cfg programline188 = 1IF(UF4,=,1XXXXXXX) ; YMotor_VixServoIH_10nm.cfg programline189 = 1"!UF25 RcvOvf" ; YMotor_VixServoIH_10nm.cfg programline190 = 1IF(UF4,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline191 = 1"!UF26 BrakeOn" ; YMotor_VixServoIH_10nm.cfg programline192 = ; YMotor_VixServoIH_10nm.cfg programline193 = ; YMotor_VixServoIH_10nm.cfg programline194 = ; YMotor_VixServoIH_10nm.cfg programline195 = ; YMotor_VixServoIH_10nm.cfg programline196 = ; YMotor_VixServoIH_10nm.cfg programline197 = ; YMotor_VixServoIH_10nm.cfg programline198 = ; YMotor_VixServoIH_10nm.cfg programline199 = ; YMotor_VixServoIH_10nm.cfg programline200 = ; YMotor_VixServoIH_10nm.cfg programline201 = ; YMotor_VixServoIH_10nm.cfg programline202 = ; YMotor_VixServoIH_10nm.cfg programline203 = ; YMotor_VixServoIH_10nm.cfg programline204 = ; YMotor_VixServoIH_10nm.cfg programline205 = ; YMotor_VixServoIH_10nm.cfg programline206 = 1IF(ST2,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline207 = 1"!ST10 MOTOR Undef" ; YMotor_VixServoIH_10nm.cfg programline208 = 1IF(ST2,=,XXXX1XXX) ; YMotor_VixServoIH_10nm.cfg programline209 = 1"!ST13 -ve" ; YMotor_VixServoIH_10nm.cfg programline210 = 1IF(ST2,=,XXXXX1XX) ; YMotor_VixServoIH_10nm.cfg programline211 = 1"!ST13 +ve" ; YMotor_VixServoIH_10nm.cfg programline212 = 1IF(ST2,=,XXXXXXX1) ; YMotor_VixServoIH_10nm.cfg programline213 = 1"!ST16 Current" ; YMotor_VixServoIH_10nm.cfg programline214 = 1IF(ST3,=,XXXXXX1X) ; YMotor_VixServoIH_10nm.cfg programline215 = 1"!ST23 TrkLimit" ; YMotor_VixServoIH_10nm.cfg programline216 = 1IF(ST4,=,X1XXXXXX) ; YMotor_VixServoIH_10nm.cfg programline217 = 1"!ST26 BrakeOn" ; YMotor_VixServoIH_10nm.cfg programline218 = 1END ; YMotor_VixServoIH_10nm.cfg programline219 = ; YMotor_VixServoIH_10nm.cfg programline220 = ; YMotor_VixServoIH_10nm.cfg programline221 = 1UF13A: ; YMotor_VixServoIH_10nm.cfg programline222 = 1IF(UF1,=,1XXXXXXX) ; YMotor_VixServoIH_10nm.cfg programline223 = 1GOSUB(UF13B) ; YMotor_VixServoIH_10nm.cfg programline224 = 1END ; YMotor_VixServoIH_10nm.cfg programline225 = 1UF13B: ; YMotor_VixServoIH_10nm.cfg programline226 = 1IF(UF2,=,XXXX0XXX) ; YMotor_VixServoIH_10nm.cfg programline227 = 1"!UF1 Range" ; YMotor_VixServoIH_10nm.cfg programline228 = 1END ; YMotor_VixServoIH_10nm.cfg receiverpollingintervalms = 50 ; YMotor_VixServoIH_10nm.cfg resetorigindelayms = 100 ; YMotor_VixServoIH_10nm.cfg reversedirection = false ; YMotor_VixServoIH_10nm.cfg scanninggainderivative_gv = 2 ; YMotor_VixServoIH_10nm.cfg scanninggainfeedforward_gf = 5 ; YMotor_VixServoIH_10nm.cfg scanninggainintegral_gi = 10 ; YMotor_VixServoIH_10nm.cfg scanninggainproportional_gp = 5 ; YMotor_VixServoIH_10nm.cfg statuspollinginterval = 50 ; YMotor_VixServoIH_10nm.cfg steps_per_mm = 100000 ; YMotor_VixServoIH_10nm.cfg tolerance_mm = 0.002 ; YMotor_VixServoIH_10nm.cfg velocity_mm_sec = 25 ; YMotor_VixServoIH_10nm.cfg velocitycontrolunitspermm = 0.0769 ; YMotor_VixServoIH_10nm.cfg velocitygranularitycontrolunitspersec = 0.001 ; YMotor_VixServoIH_10nm.cfg vixmotortype = MT49420 ; YMotor_VixServoIH_10nm.cfg vixuseencoder = true ; YMotor_VixServoIH_10nm.cfg [ystagelock] exists = false ; HiSeq4000.cfg lockdelayms = 100 ; YStageLock.cfg simulated = true ; BrunoPilotCommon.cfg [zmotor] cosmeticname = Z Motor ; Scanner.cfg driverconfigname = ZMotor_FPGAControlledPIMotor_250um ; ZMotor_FPGAControlledPIMotor_250um.cfg simulated = false ; Override.cfg zdiagsweepzvelocity = 0.07 ; HiSeq4000.cfg [zmotor_fpgacontrolledpimotor_250um] accel_mm_sec2 = 50000 ; ZMotor_FPGAControlledPIMotor_250um.cfg accelcontrolunitspermm2 = 1 ; ZMotor_FPGAControlledPIMotor_250um.cfg adc_vmax = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg adc_vmin = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg adcdacvoltageerrorlimit = 1.00 ; ZMotor_FPGAControlledPIMotor_250um.cfg adcdacvoltagewarninglimit = 0.150 ; ZMotor_FPGAControlledPIMotor_250um.cfg adcnoiseerrorlimit = 3277 ; ZMotor_FPGAControlledPIMotor_250um.cfg adcnoisewarninglimit = 655 ; ZMotor_FPGAControlledPIMotor_250um.cfg after_stop_delay_ms = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg after_stop_tolerance_mm = 0.001 ; ZMotor_FPGAControlledPIMotor_250um.cfg after_stop_tolerance_mm_motor_off = 0.001 ; ZMotor_FPGAControlledPIMotor_250um.cfg applicationmaxvelocitymmpersec = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg applicationminvelocitymmpersec = 0.1 ; ZMotor_FPGAControlledPIMotor_250um.cfg backlashcorrectionmm = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg calibrationadcreads = 50 ; ZMotor_FPGAControlledPIMotor_250um.cfg calibrationextradelayms = 1000 ; ZMotor_FPGAControlledPIMotor_250um.cfg conditionbeforeeachslide = false ; ZMotor_FPGAControlledPIMotor_250um.cfg controllermaxvelocitycontrolunitspersec = 3333.333333 ; ZMotor_FPGAControlledPIMotor_250um.cfg controllerminvelocitycontrolunitspersec = 0.000000776113988 ; ZMotor_FPGAControlledPIMotor_250um.cfg dac_calibrationv1 = 2 ; ZMotor_FPGAControlledPIMotor_250um.cfg dac_calibrationv2 = 8 ; ZMotor_FPGAControlledPIMotor_250um.cfg dac_vmax = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg dac_vmin = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg defaultmotortimeoutms = 60000 ; ZMotor_FPGAControlledPIMotor_250um.cfg defaultsteptestsectionsuffix = LowAmplitudeStep ; ZMotor_FPGAControlledPIMotor_250um.cfg extra_motion_timeout_ms = 60000 ; ZMotor_FPGAControlledPIMotor_250um.cfg gainderivative = 0.5 ; ZMotor_FPGAControlledPIMotor_250um.cfg gainfeedforward = 0.0 ; ZMotor_FPGAControlledPIMotor_250um.cfg gainintegral = 0.047 ; ZMotor_FPGAControlledPIMotor_250um.cfg gainproportional = 0.5 ; ZMotor_FPGAControlledPIMotor_250um.cfg home_accel = 80 ; ZMotor_FPGAControlledPIMotor_250um.cfg home_creep_velocity_mm_sec = 0.05 ; ZMotor_FPGAControlledPIMotor_250um.cfg home_steps_per_unit = 20000 ; ZMotor_FPGAControlledPIMotor_250um.cfg home_tolerance = 0.249 ; ZMotor_FPGAControlledPIMotor_250um.cfg home_velocity = 2 ; ZMotor_FPGAControlledPIMotor_250um.cfg homehighmovesforward = true ; ZMotor_FPGAControlledPIMotor_250um.cfg homingtimeoutms = 60000 ; ZMotor_FPGAControlledPIMotor_250um.cfg init_il = 9.998 ; ZMotor_FPGAControlledPIMotor_250um.cfg init_tl = 9.998 ; ZMotor_FPGAControlledPIMotor_250um.cfg latchinputactivehigh = true ; ZMotor_FPGAControlledPIMotor_250um.cfg limitsactivehigh = false ; ZMotor_FPGAControlledPIMotor_250um.cfg linearitytestenabled = false ; ZMotor_FPGAControlledPIMotor_250um.cfg linearitytestextradelayms = 500 ; ZMotor_FPGAControlledPIMotor_250um.cfg linearitytestnumadcreads = 20 ; ZMotor_FPGAControlledPIMotor_250um.cfg linearityteststepmm = 0.005 ; ZMotor_FPGAControlledPIMotor_250um.cfg linearityteststopsatnonlinearity = false ; ZMotor_FPGAControlledPIMotor_250um.cfg linearitytesttolerancemm = 0.0005 ; ZMotor_FPGAControlledPIMotor_250um.cfg magnetunderobjectivepositionmm = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg marginum = 1 ; ZMotor_FPGAControlledPIMotor_250um.cfg max_accel_mm_sec2 = 200000 ; ZMotor_FPGAControlledPIMotor_250um.cfg max_tolerance_mm = 0.249 ; ZMotor_FPGAControlledPIMotor_250um.cfg maxburnindutycycle = 50 ; ZMotor_FPGAControlledPIMotor_250um.cfg min_accel_mm_sec2 = 1024 ; ZMotor_FPGAControlledPIMotor_250um.cfg min_tolerance_mm = 0.01 ; ZMotor_FPGAControlledPIMotor_250um.cfg minallowedsoftlimitspanum = 230 ; ZMotor_FPGAControlledPIMotor_250um.cfg motorstoppedmaxerrorsteps = 2 ; ZMotor_FPGAControlledPIMotor_250um.cfg moveadcreads = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg neg_limit_mm = -0.235 ; ZMotor_FPGAControlledPIMotor_250um.cfg numretries = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg pos_limit_mm = -0.005 ; ZMotor_FPGAControlledPIMotor_250um.cfg positionpollinginterval = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg rangemmaccordingtopi = 0.250 ; ZMotor_FPGAControlledPIMotor_250um.cfg reversedirection = true ; ZMotor_FPGAControlledPIMotor_250um.cfg safelinearitytestextradelayms = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg safelinearitytestnumadcreads = 15 ; ZMotor_FPGAControlledPIMotor_250um.cfg safenegativelimitmarginum = 5 ; ZMotor_FPGAControlledPIMotor_250um.cfg safenegativelimitstepum = 3 ; ZMotor_FPGAControlledPIMotor_250um.cfg safepositivelimitmarginum = 5 ; ZMotor_FPGAControlledPIMotor_250um.cfg safepositivelimitstepum = 3 ; ZMotor_FPGAControlledPIMotor_250um.cfg servoherelogeverypoll = true ; ZMotor_FPGAControlledPIMotor_250um.cfg servoheremindelayms = 50 ; ZMotor_FPGAControlledPIMotor_250um.cfg servoherepollintervalms = 50 ; ZMotor_FPGAControlledPIMotor_250um.cfg servoherepolluntiltimeout = true ; ZMotor_FPGAControlledPIMotor_250um.cfg servoheretimeoutms = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg servoheretolerancemm = 0.05 ; ZMotor_FPGAControlledPIMotor_250um.cfg servoupdatetimemicroseconds = 250 ; ZMotor_FPGAControlledPIMotor_250um.cfg settledurationmswithintolerance = 50 ; ZMotor_FPGAControlledPIMotor_250um.cfg settlethrowiftimeout = true ; ZMotor_FPGAControlledPIMotor_250um.cfg settletimeoutmsactivateoff = 500 ; ZMotor_FPGAControlledPIMotor_250um.cfg settletimeoutmsactivateon = 500 ; ZMotor_FPGAControlledPIMotor_250um.cfg settletimeoutmsaftermove = 200 ; ZMotor_FPGAControlledPIMotor_250um.cfg statuspollinginterval = 50 ; ZMotor_FPGAControlledPIMotor_250um.cfg steps_per_mm = 262140 ; ZMotor_FPGAControlledPIMotor_250um.cfg tolerance_mm = 0.249 ; ZMotor_FPGAControlledPIMotor_250um.cfg useadcreadouts = false ; ZMotor_FPGAControlledPIMotor_250um.cfg usesafehoming = true ; ZMotor_FPGAControlledPIMotor_250um.cfg usesettlescript = true ; ZMotor_FPGAControlledPIMotor_250um.cfg usesoftlimitsfromcfg = false ; ZMotor_FPGAControlledPIMotor_250um.cfg usezmvduringhoming = false ; ZMotor_FPGAControlledPIMotor_250um.cfg velocity_mm_sec = 1 ; ZMotor_FPGAControlledPIMotor_250um.cfg velocitycontrolunitspermm = 19.6605 ; ZMotor_FPGAControlledPIMotor_250um.cfg velocitygranularitycontrolunitspersec = 0.000000776113988 ; ZMotor_FPGAControlledPIMotor_250um.cfg veryslowgainderivative = 0.5 ; ZMotor_FPGAControlledPIMotor_250um.cfg veryslowgainintegral = 0.047 ; ZMotor_FPGAControlledPIMotor_250um.cfg veryslowgainproportional = 0.5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagcalibrationadcdacvoltagetolerance = 0.300 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagcalibrationminsoftlimitspanum = 240 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditheramplitudenm = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherfftregion1_endfreqhz = 50 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherfftregion1_maxamplitudeum = 0.12 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherfftregion1_minamplitudeum = 0.03 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherfftregion1_startfreqhz = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherfftregion2_endfreqhz = 9999 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherfftregion2_maxamplitudeum = 0.06 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherfftregion2_minamplitudeum = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherfftregion2_startfreqhz = 50 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagdithermaxallowedaveragerisetimems = 25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagdithermaxnegamplitudeerrornm = 5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagdithermaxoffseterrorum = 20 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagdithermaxposamplitudeerrornm = 50 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherminallowednumedges = 20 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagdithermotordelayframes = 25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagditherrisetimeminpercentamplitude = 90 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlefftregion1_endfreqhz = 600 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlefftregion1_maxamplitudeum = 0.05 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlefftregion1_minamplitudeum = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlefftregion1_startfreqhz = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlefftregion2_endfreqhz = 9999 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlefftregion2_maxamplitudeum = 0.01 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlefftregion2_minamplitudeum = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlefftregion2_startfreqhz = 600 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlemaxoffseterrorum = 20 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagidlemaxrmserrorum = 0.07 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagpercentofnyquist = 50.0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsetupvelocitymmpersec = 0.3 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsweeplinearityfullspanmaxpeakerrorum = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsweeplinearityfullspanmaxrmserrorum = 1 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsweeplinearityminspanwithintoleranceum = 245 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsweeplinearityplusminustoleranceum = 1 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsweepminspanum = 248 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsweepstartdelayms = 700 ; HiSeq4000.cfg zdiagsweepzvelocity = 0.11 ; ZMotor_FPGAControlledPIMotor_250um.cfg zjumpdetectenabled = true ; ZMotor_FPGAControlledPIMotor_250um.cfg zjumpdetectgapsizeum = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg zjumpdetectnumgapsforretry = 900 ; ZMotor_FPGAControlledPIMotor_250um.cfg zjumpdetectspannumlines = 1000 ; ZMotor_FPGAControlledPIMotor_250um.cfg zjumpthrowsexception = true ; ZMotor_FPGAControlledPIMotor_250um.cfg ztriggerdeltamm = 0.0 ; ZMotor_FPGAControlledPIMotor_250um.cfg [zmotor_fpgacontrolledpimotor_250um.highamplitudestep] zdiagstepamplitudevolts = 1.0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion1_endfreqhz = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion1_maxamplitudeum = 25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion1_minamplitudeum = 5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion1_startfreqhz = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion2_endfreqhz = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion2_maxamplitudeum = 6 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion2_minamplitudeum = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion2_startfreqhz = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion3_endfreqhz = 9999 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion3_maxamplitudeum = 2 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion3_minamplitudeum = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion3_startfreqhz = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_12.00_mm_sec = 1.5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_2.00_mm_sec = .25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_3.75_mm_sec = 0.46875 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstephysteresisfactor = 0.3 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepmaxallowedrisetimems = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepmaxovershootum = 5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepmaxsettlingtimems = 15 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepminhightimems = 200 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsteprisetimemarginms = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepsamplesperaverage = 25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepsettlednoiselimitum = 0.10 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepsettledwindowsizems = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg [zmotor_fpgacontrolledpimotor_250um.highamplitudestep_518] zdiagstepamplitudevolts = 1.0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_12.00_mm_sec = 1.5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_2.00_mm_sec = .25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_3.75_mm_sec = 0.46875 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstephysteresisfactor = 0.3 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepmaxallowedrisetimems = 30 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepmaxovershootum = 5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepmaxsettlingtimems = 25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepminhightimems = 200 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsteprisetimemarginms = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepsamplesperaverage = 25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepsettlednoiselimitum = 0.025 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepsettledwindowsizems = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg [zmotor_fpgacontrolledpimotor_250um.lowamplitudestep] zdiagstepamplitudevolts = 0.01 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion1_endfreqhz = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion1_maxamplitudeum = 5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion1_minamplitudeum = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion1_startfreqhz = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion2_endfreqhz = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion2_maxamplitudeum = 5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion2_minamplitudeum = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion2_startfreqhz = 10 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion3_endfreqhz = 9999 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion3_maxamplitudeum = 2 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion3_minamplitudeum = 0 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfftregion3_startfreqhz = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_12.00_mm_sec = 1.5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_2.00_mm_sec = .25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_3.75_mm_sec = 0.46875 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepfrequencyhz_7.50_mm_sec = 0.9375 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstephysteresisfactor = 0.3 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepmaxallowedrisetimems = 20 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepmaxovershootum = 5 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepmaxsettlingtimems = 25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepminhightimems = 200 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagsteprisetimemarginms = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepsamplesperaverage = 25 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepsettlednoiselimitum = 0.025 ; ZMotor_FPGAControlledPIMotor_250um.cfg zdiagstepsettledwindowsizems = 100 ; ZMotor_FPGAControlledPIMotor_250um.cfg ;[FPGADynamicFocusSettingsClassicRun] ;MaxInitialZJumpHalfUm = 3 ;MaxSubsequentZJumpHalfUm = 7 ;NumberOfInitialZJumps = 0 ;CVGainStart = 250 ;CVGainPosLocked = 250 ;Offset = 0 ;HotPixel = 200 ;MotorDelayFrames = 35 ;SoftwareLaserLag = 1 ;DitherSize = 100 ;GroupSize = 50 ;DitherShift = 20 ;IntensityCeiling = 65535 ;IGain = 50 ;IHistory = 4