17-02-28 19:40:28.246 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2===================
17-02-28 19:40:28.247 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle===================
17-02-28 19:40:28.247 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:28.248 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:28.248 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:28.248 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:28.280 -08 000000011 INF: ===================Image Analysis Flow Cell A 01, MMFProcessing===================
17-02-28 19:40:28.286 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:28.286 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Selecting Reagent HB2 (6)===================
17-02-28 19:40:28.286 -08 000000018 INF: Valve A1: Go to position 6
17-02-28 19:40:28.286 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:40:28.288 -08 000000011 INF: ===================Saving Thumbnail Image Channel C===================
17-02-28 19:40:28.348 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 3\r
17-02-28 19:40:28.348 -08 000000018 INF: Valve A1: 914.741 seconds since last move, > 10.000 seconds required between moves
17-02-28 19:40:28.348 -08 000000018 INF: Valve A1: Taking shortest path 'CW' from 3 to 6
17-02-28 19:40:28.348 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CW6\r
17-02-28 19:40:28.349 -08 000000018 INF: SerialPort A1 (VICIA1): Recv  (discarded)
17-02-28 19:40:28.349 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:40:28.390 -08 000000011 INF: ===================Image Analysis Flow Cell A 01, MMFProcessing===================
17-02-28 19:40:28.396 -08 000000011 INF: ===================Saving Thumbnail Image Channel G===================
17-02-28 19:40:28.501 -08 000000011 INF: ===================Image Analysis Flow Cell A 01, MMFProcessing===================
17-02-28 19:40:28.598 -08 000000070 INF: FPGA: Recv MIOCOMPF
17-02-28 19:40:28.598 -08 000000042 INF: Compensator: Moved IntoPath in 398 ms
17-02-28 19:40:28.598 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface===================
17-02-28 19:40:28.599 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface===================
17-02-28 19:40:28.600 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:40:28.600 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:40:28.600 -08 000000042 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:40:28.600 -08 000000042 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:40:28.662 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:40:28.662 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:40:28.663 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt===================
17-02-28 19:40:28.663 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt===================
17-02-28 19:40:28.664 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, SetPower Laser 1 - Smd6000 Green 532 APC===================
17-02-28 19:40:28.664 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER=999\r
17-02-28 19:40:28.664 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, SetPower Laser 2 - Smd6000 Red 660 APC===================
17-02-28 19:40:28.664 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER=150\r
17-02-28 19:40:28.785 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 6\r
17-02-28 19:40:28.785 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:28.785 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Opening shutoff valve===================
17-02-28 19:40:28.809 -08 000000011 INF: ===================Image Analysis Flow Cell A 01===================
17-02-28 19:40:29.224 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:29.225 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:29.282 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:29.282 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:29.283 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:29.286 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0636mW\r\n
17-02-28 19:40:29.286 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt===================
17-02-28 19:40:29.287 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:29.288 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0557mW\r\n
17-02-28 19:40:29.288 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt===================
17-02-28 19:40:29.288 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling, GetPower Laser 2 - Smd6000 Red 660 APC===================
17-02-28 19:40:29.288 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:29.289 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:29.290 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling, GetPower Laser 1 - Smd6000 Green 532 APC===================
17-02-28 19:40:29.290 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:29.347 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:29.348 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0631mW\r\n
17-02-28 19:40:29.348 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0561mW\r\n
17-02-28 19:40:29.348 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:29.348 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:29.349 -08 000000093 INF: Laser 2 power 631, target 150
17-02-28 19:40:29.349 -08 000000035 INF: Laser 1 power 561, target 999
17-02-28 19:40:29.349 -08 000000093 INF: ===================Laser 2 power 631, target 150===================
17-02-28 19:40:29.349 -08 000000035 INF: ===================Laser 1 power 561, target 999===================
17-02-28 19:40:29.355 -08 000000018 INF: KloehnPump A (KLOEHNA): Pumping from 6, aspirate port PortB, aspiration rate 500, dispense rate 2500, volume 95, calling command "Pumping to Flowcell #1 pump index #0", State=Running, Depth=2, Children=0, Thread="Run", Parent="Deblock", Type=SameThreadBlocking, solution delay 5000
17-02-28 19:40:29.447 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:40:29.533 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`0 (0x03)\r\n(0xFF)
17-02-28 19:40:29.533 -08 000000018 INF: Current Position of Pump is: 0
17-02-28 19:40:29.633 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1OR\r
17-02-28 19:40:29.723 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:29.823 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:29.849 -08 000000093 INF: ===================Laser 2 power 631, target 150===================
17-02-28 19:40:29.849 -08 000000035 INF: ===================Laser 1 power 561, target 999===================
17-02-28 19:40:29.849 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:29.850 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:29.910 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0596mW\r\n
17-02-28 19:40:29.910 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0582mW\r\n
17-02-28 19:40:29.910 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:29.910 -08 000000093 INF: ===================Laser 2 power 631, target 150===================
17-02-28 19:40:29.910 -08 000000035 INF: ===================Laser 1 power 561, target 999===================
17-02-28 19:40:29.911 -08 000000093 INF: Laser 2 power 596, target 150
17-02-28 19:40:29.911 -08 000000035 INF: Laser 1 power 582, target 999
17-02-28 19:40:29.911 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:29.911 -08 000000093 INF: ===================Laser 2 power 596, target 150===================
17-02-28 19:40:29.911 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:29.912 -08 000000035 INF: ===================Laser 1 power 582, target 999===================
17-02-28 19:40:30.160 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:30.223 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:30.323 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V10000A0R\r
17-02-28 19:40:30.406 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:30.411 -08 000000093 INF: ===================Laser 2 power 596, target 150===================
17-02-28 19:40:30.411 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:30.412 -08 000000035 INF: ===================Laser 1 power 582, target 999===================
17-02-28 19:40:30.412 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:30.472 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0567mW\r\n
17-02-28 19:40:30.472 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0611mW\r\n
17-02-28 19:40:30.472 -08 000000093 INF: ===================Laser 2 power 596, target 150===================
17-02-28 19:40:30.472 -08 000000035 INF: ===================Laser 1 power 582, target 999===================
17-02-28 19:40:30.473 -08 000000093 INF: Laser 2 power 567, target 150
17-02-28 19:40:30.473 -08 000000035 INF: Laser 1 power 611, target 999
17-02-28 19:40:30.473 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:30.473 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:30.473 -08 000000093 INF: ===================Laser 2 power 567, target 150===================
17-02-28 19:40:30.473 -08 000000035 INF: ===================Laser 1 power 611, target 999===================
17-02-28 19:40:30.506 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:30.533 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:30.533 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6), Aspirating port PortB===================
17-02-28 19:40:30.633 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V1600IP18240R\r
17-02-28 19:40:30.718 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:30.818 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:30.906 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:30.973 -08 000000093 INF: ===================Laser 2 power 567, target 150===================
17-02-28 19:40:30.973 -08 000000035 INF: ===================Laser 1 power 611, target 999===================
17-02-28 19:40:30.974 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:30.974 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:31.031 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0538mW\r\n
17-02-28 19:40:31.031 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0634mW\r\n
17-02-28 19:40:31.031 -08 000000093 INF: ===================Laser 2 power 567, target 150===================
17-02-28 19:40:31.031 -08 000000035 INF: ===================Laser 1 power 611, target 999===================
17-02-28 19:40:31.032 -08 000000093 INF: Laser 2 power 538, target 150
17-02-28 19:40:31.032 -08 000000035 INF: Laser 1 power 634, target 999
17-02-28 19:40:31.032 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:31.032 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:31.032 -08 000000093 INF: ===================Laser 2 power 538, target 150===================
17-02-28 19:40:31.032 -08 000000035 INF: ===================Laser 1 power 634, target 999===================
17-02-28 19:40:31.156 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:31.163 -08 000000061 INF: Received template done call from RTA
17-02-28 19:40:31.217 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:31.467 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:31.529 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:31.532 -08 000000093 INF: ===================Laser 2 power 538, target 150===================
17-02-28 19:40:31.532 -08 000000035 INF: ===================Laser 1 power 634, target 999===================
17-02-28 19:40:31.532 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:31.533 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:31.596 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0656mW\r\n
17-02-28 19:40:31.596 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0510mW\r\n
17-02-28 19:40:31.596 -08 000000035 INF: ===================Laser 1 power 634, target 999===================
17-02-28 19:40:31.596 -08 000000093 INF: ===================Laser 2 power 538, target 150===================
17-02-28 19:40:31.597 -08 000000035 INF: Laser 1 power 656, target 999
17-02-28 19:40:31.597 -08 000000093 INF: Laser 2 power 510, target 150
17-02-28 19:40:31.597 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:31.597 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:31.597 -08 000000035 INF: ===================Laser 1 power 656, target 999===================
17-02-28 19:40:31.597 -08 000000093 INF: ===================Laser 2 power 510, target 150===================
17-02-28 19:40:31.779 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:31.843 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:32.093 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:32.097 -08 000000035 INF: ===================Laser 1 power 656, target 999===================
17-02-28 19:40:32.097 -08 000000093 INF: ===================Laser 2 power 510, target 150===================
17-02-28 19:40:32.097 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:32.097 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:32.153 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:32.154 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0684mW\r\n
17-02-28 19:40:32.154 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0484mW\r\n
17-02-28 19:40:32.154 -08 000000035 INF: ===================Laser 1 power 656, target 999===================
17-02-28 19:40:32.154 -08 000000093 INF: ===================Laser 2 power 510, target 150===================
17-02-28 19:40:32.155 -08 000000035 INF: Laser 1 power 684, target 999
17-02-28 19:40:32.155 -08 000000093 INF: Laser 2 power 484, target 150
17-02-28 19:40:32.155 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:32.155 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:32.155 -08 000000035 INF: ===================Laser 1 power 684, target 999===================
17-02-28 19:40:32.155 -08 000000093 INF: ===================Laser 2 power 484, target 150===================
17-02-28 19:40:32.403 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:32.466 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:32.655 -08 000000035 INF: ===================Laser 1 power 684, target 999===================
17-02-28 19:40:32.655 -08 000000093 INF: ===================Laser 2 power 484, target 150===================
17-02-28 19:40:32.655 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:32.655 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:32.716 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:32.717 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0457mW\r\n
17-02-28 19:40:32.717 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0713mW\r\n
17-02-28 19:40:32.717 -08 000000093 INF: ===================Laser 2 power 484, target 150===================
17-02-28 19:40:32.717 -08 000000035 INF: ===================Laser 1 power 684, target 999===================
17-02-28 19:40:32.718 -08 000000093 INF: Laser 2 power 457, target 150
17-02-28 19:40:32.718 -08 000000035 INF: Laser 1 power 713, target 999
17-02-28 19:40:32.718 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:32.718 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:32.718 -08 000000093 INF: ===================Laser 2 power 457, target 150===================
17-02-28 19:40:32.718 -08 000000035 INF: ===================Laser 1 power 713, target 999===================
17-02-28 19:40:32.778 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:33.028 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:33.089 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:33.218 -08 000000035 INF: ===================Laser 1 power 713, target 999===================
17-02-28 19:40:33.218 -08 000000093 INF: ===================Laser 2 power 457, target 150===================
17-02-28 19:40:33.218 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:33.219 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:33.277 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0746mW\r\n
17-02-28 19:40:33.277 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0432mW\r\n
17-02-28 19:40:33.277 -08 000000035 INF: ===================Laser 1 power 713, target 999===================
17-02-28 19:40:33.277 -08 000000093 INF: ===================Laser 2 power 457, target 150===================
17-02-28 19:40:33.278 -08 000000035 INF: Laser 1 power 746, target 999
17-02-28 19:40:33.278 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:33.278 -08 000000093 INF: Laser 2 power 432, target 150
17-02-28 19:40:33.278 -08 000000035 INF: ===================Laser 1 power 746, target 999===================
17-02-28 19:40:33.278 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:33.278 -08 000000093 INF: ===================Laser 2 power 432, target 150===================
17-02-28 19:40:33.339 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:33.403 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:33.653 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:33.713 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:33.778 -08 000000093 INF: ===================Laser 2 power 432, target 150===================
17-02-28 19:40:33.778 -08 000000035 INF: ===================Laser 1 power 746, target 999===================
17-02-28 19:40:33.778 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:33.778 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:33.839 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0773mW\r\n
17-02-28 19:40:33.839 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0416mW\r\n
17-02-28 19:40:33.839 -08 000000035 INF: ===================Laser 1 power 746, target 999===================
17-02-28 19:40:33.839 -08 000000093 INF: ===================Laser 2 power 432, target 150===================
17-02-28 19:40:33.840 -08 000000035 INF: Laser 1 power 773, target 999
17-02-28 19:40:33.840 -08 000000093 INF: Laser 2 power 416, target 150
17-02-28 19:40:33.840 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:33.840 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:33.840 -08 000000035 INF: ===================Laser 1 power 773, target 999===================
17-02-28 19:40:33.840 -08 000000093 INF: ===================Laser 2 power 416, target 150===================
17-02-28 19:40:33.963 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:34.027 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:34.277 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:34.338 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:34.340 -08 000000093 INF: ===================Laser 2 power 416, target 150===================
17-02-28 19:40:34.340 -08 000000035 INF: ===================Laser 1 power 773, target 999===================
17-02-28 19:40:34.340 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:34.340 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:34.404 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0402mW\r\n
17-02-28 19:40:34.404 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0817mW\r\n
17-02-28 19:40:34.404 -08 000000093 INF: ===================Laser 2 power 416, target 150===================
17-02-28 19:40:34.404 -08 000000035 INF: ===================Laser 1 power 773, target 999===================
17-02-28 19:40:34.405 -08 000000093 INF: Laser 2 power 402, target 150
17-02-28 19:40:34.405 -08 000000035 INF: Laser 1 power 817, target 999
17-02-28 19:40:34.405 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:34.405 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:34.405 -08 000000093 INF: ===================Laser 2 power 402, target 150===================
17-02-28 19:40:34.405 -08 000000035 INF: ===================Laser 1 power 817, target 999===================
17-02-28 19:40:34.588 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:34.650 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:34.900 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:34.905 -08 000000035 INF: ===================Laser 1 power 817, target 999===================
17-02-28 19:40:34.905 -08 000000093 INF: ===================Laser 2 power 402, target 150===================
17-02-28 19:40:34.905 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:34.905 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:34.963 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:34.964 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0856mW\r\n
17-02-28 19:40:34.964 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0388mW\r\n
17-02-28 19:40:34.964 -08 000000035 INF: ===================Laser 1 power 817, target 999===================
17-02-28 19:40:34.964 -08 000000093 INF: ===================Laser 2 power 402, target 150===================
17-02-28 19:40:34.965 -08 000000035 INF: Laser 1 power 856, target 999
17-02-28 19:40:34.965 -08 000000093 INF: Laser 2 power 388, target 150
17-02-28 19:40:34.965 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:34.965 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:34.965 -08 000000035 INF: ===================Laser 1 power 856, target 999===================
17-02-28 19:40:34.965 -08 000000093 INF: ===================Laser 2 power 388, target 150===================
17-02-28 19:40:35.213 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:35.275 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:35.465 -08 000000093 INF: ===================Laser 2 power 388, target 150===================
17-02-28 19:40:35.465 -08 000000035 INF: ===================Laser 1 power 856, target 999===================
17-02-28 19:40:35.465 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:35.465 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:35.524 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0905mW\r\n
17-02-28 19:40:35.524 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0373mW\r\n
17-02-28 19:40:35.524 -08 000000035 INF: ===================Laser 1 power 856, target 999===================
17-02-28 19:40:35.524 -08 000000093 INF: ===================Laser 2 power 388, target 150===================
17-02-28 19:40:35.525 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:35.525 -08 000000035 INF: Laser 1 power 905, target 999
17-02-28 19:40:35.525 -08 000000093 INF: Laser 2 power 373, target 150
17-02-28 19:40:35.525 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:35.525 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:35.525 -08 000000035 INF: ===================Laser 1 power 905, target 999===================
17-02-28 19:40:35.525 -08 000000093 INF: ===================Laser 2 power 373, target 150===================
17-02-28 19:40:35.585 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:35.835 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:35.897 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:36.026 -08 000000035 INF: ===================Laser 1 power 905, target 999===================
17-02-28 19:40:36.026 -08 000000093 INF: ===================Laser 2 power 373, target 150===================
17-02-28 19:40:36.026 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:36.026 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:36.086 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0361mW\r\n
17-02-28 19:40:36.086 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0956mW\r\n
17-02-28 19:40:36.086 -08 000000093 INF: ===================Laser 2 power 373, target 150===================
17-02-28 19:40:36.086 -08 000000035 INF: ===================Laser 1 power 905, target 999===================
17-02-28 19:40:36.087 -08 000000093 INF: Laser 2 power 361, target 150
17-02-28 19:40:36.087 -08 000000035 INF: Laser 1 power 956, target 999
17-02-28 19:40:36.087 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:36.087 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:36.087 -08 000000093 INF: ===================Laser 2 power 361, target 150===================
17-02-28 19:40:36.087 -08 000000035 INF: ===================Laser 1 power 956, target 999===================
17-02-28 19:40:36.148 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:36.210 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:36.460 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:36.526 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:36.587 -08 000000035 INF: ===================Laser 1 power 956, target 999===================
17-02-28 19:40:36.587 -08 000000093 INF: ===================Laser 2 power 361, target 150===================
17-02-28 19:40:36.587 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:36.587 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:36.648 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0998mW\r\n
17-02-28 19:40:36.648 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0351mW\r\n
17-02-28 19:40:36.648 -08 000000035 INF: ===================Laser 1 power 956, target 999===================
17-02-28 19:40:36.648 -08 000000093 INF: ===================Laser 2 power 361, target 150===================
17-02-28 19:40:36.649 -08 000000035 INF: Laser 1 power 998, target 999
17-02-28 19:40:36.649 -08 000000093 INF: Laser 2 power 351, target 150
17-02-28 19:40:36.649 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:36.649 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:36.649 -08 000000035 INF: ===================Laser 1 power 998, target 999===================
17-02-28 19:40:36.649 -08 000000093 INF: ===================Laser 2 power 351, target 150===================
17-02-28 19:40:36.776 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:36.835 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:37.085 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:37.148 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:37.149 -08 000000093 INF: ===================Laser 2 power 351, target 150===================
17-02-28 19:40:37.149 -08 000000035 INF: ===================Laser 1 power 998, target 999===================
17-02-28 19:40:37.149 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:37.149 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:37.212 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0342mW\r\n
17-02-28 19:40:37.212 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1048mW\r\n
17-02-28 19:40:37.212 -08 000000093 INF: ===================Laser 2 power 351, target 150===================
17-02-28 19:40:37.212 -08 000000035 INF: ===================Laser 1 power 998, target 999===================
17-02-28 19:40:37.213 -08 000000093 INF: Laser 2 power 342, target 150
17-02-28 19:40:37.213 -08 000000035 INF: Laser 1 power 1048, target 999
17-02-28 19:40:37.213 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:37.213 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:37.213 -08 000000093 INF: ===================Laser 2 power 342, target 150===================
17-02-28 19:40:37.213 -08 000000035 INF: ===================Laser 1 power 1048, target 999===================
17-02-28 19:40:37.398 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:37.460 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:37.710 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:37.713 -08 000000093 INF: ===================Laser 2 power 342, target 150===================
17-02-28 19:40:37.713 -08 000000035 INF: ===================Laser 1 power 1048, target 999===================
17-02-28 19:40:37.713 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:37.713 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:37.770 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:37.771 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0332mW\r\n
17-02-28 19:40:37.771 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1101mW\r\n
17-02-28 19:40:37.771 -08 000000093 INF: ===================Laser 2 power 342, target 150===================
17-02-28 19:40:37.771 -08 000000035 INF: ===================Laser 1 power 1048, target 999===================
17-02-28 19:40:37.772 -08 000000093 INF: Laser 2 power 332, target 150
17-02-28 19:40:37.772 -08 000000035 INF: Laser 1 power 1101, target 999
17-02-28 19:40:37.772 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:37.772 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:37.772 -08 000000093 INF: ===================Laser 2 power 332, target 150===================
17-02-28 19:40:37.772 -08 000000035 INF: ===================Laser 1 power 1101, target 999===================
17-02-28 19:40:38.022 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:38.084 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:38.272 -08 000000035 INF: ===================Laser 1 power 1101, target 999===================
17-02-28 19:40:38.272 -08 000000093 INF: ===================Laser 2 power 332, target 150===================
17-02-28 19:40:38.272 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:38.272 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:38.334 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:38.335 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0316mW\r\n
17-02-28 19:40:38.335 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1131mW\r\n
17-02-28 19:40:38.335 -08 000000093 INF: ===================Laser 2 power 332, target 150===================
17-02-28 19:40:38.335 -08 000000035 INF: ===================Laser 1 power 1101, target 999===================
17-02-28 19:40:38.336 -08 000000093 INF: Laser 2 power 316, target 150
17-02-28 19:40:38.336 -08 000000035 INF: Laser 1 power 1131, target 999
17-02-28 19:40:38.336 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:38.336 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:38.336 -08 000000093 INF: ===================Laser 2 power 316, target 150===================
17-02-28 19:40:38.336 -08 000000035 INF: ===================Laser 1 power 1131, target 999===================
17-02-28 19:40:38.396 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:38.646 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:38.708 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:38.836 -08 000000093 INF: ===================Laser 2 power 316, target 150===================
17-02-28 19:40:38.836 -08 000000035 INF: ===================Laser 1 power 1131, target 999===================
17-02-28 19:40:38.836 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:38.836 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:38.894 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0313mW\r\n
17-02-28 19:40:38.894 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1140mW\r\n
17-02-28 19:40:38.894 -08 000000093 INF: ===================Laser 2 power 316, target 150===================
17-02-28 19:40:38.894 -08 000000035 INF: ===================Laser 1 power 1131, target 999===================
17-02-28 19:40:38.895 -08 000000093 INF: Laser 2 power 313, target 150
17-02-28 19:40:38.895 -08 000000035 INF: Laser 1 power 1140, target 999
17-02-28 19:40:38.895 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:38.895 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:38.895 -08 000000093 INF: ===================Laser 2 power 313, target 150===================
17-02-28 19:40:38.895 -08 000000035 INF: ===================Laser 1 power 1140, target 999===================
17-02-28 19:40:38.958 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:39.038 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:39.288 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:39.348 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:39.396 -08 000000093 INF: ===================Laser 2 power 313, target 150===================
17-02-28 19:40:39.396 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:39.396 -08 000000035 INF: ===================Laser 1 power 1140, target 999===================
17-02-28 19:40:39.396 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:39.473 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0307mW\r\n
17-02-28 19:40:39.473 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1082mW\r\n
17-02-28 19:40:39.473 -08 000000093 INF: ===================Laser 2 power 313, target 150===================
17-02-28 19:40:39.473 -08 000000035 INF: ===================Laser 1 power 1140, target 999===================
17-02-28 19:40:39.474 -08 000000093 INF: Laser 2 power 307, target 150
17-02-28 19:40:39.474 -08 000000035 INF: Laser 1 power 1082, target 999
17-02-28 19:40:39.474 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:39.474 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:39.474 -08 000000093 INF: ===================Laser 2 power 307, target 150===================
17-02-28 19:40:39.474 -08 000000035 INF: ===================Laser 1 power 1082, target 999===================
17-02-28 19:40:39.598 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:39.660 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:39.910 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:39.971 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:39.974 -08 000000035 INF: ===================Laser 1 power 1082, target 999===================
17-02-28 19:40:39.974 -08 000000093 INF: ===================Laser 2 power 307, target 150===================
17-02-28 19:40:39.974 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:39.975 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:40.034 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0296mW\r\n
17-02-28 19:40:40.034 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1019mW\r\n
17-02-28 19:40:40.034 -08 000000093 INF: ===================Laser 2 power 307, target 150===================
17-02-28 19:40:40.034 -08 000000035 INF: ===================Laser 1 power 1082, target 999===================
17-02-28 19:40:40.035 -08 000000093 INF: Laser 2 power 296, target 150
17-02-28 19:40:40.035 -08 000000035 INF: Laser 1 power 1019, target 999
17-02-28 19:40:40.035 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:40.035 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:40.035 -08 000000093 INF: ===================Laser 2 power 296, target 150===================
17-02-28 19:40:40.035 -08 000000035 INF: ===================Laser 1 power 1019, target 999===================
17-02-28 19:40:40.221 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:40.284 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:40.534 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:40.535 -08 000000093 INF: ===================Laser 2 power 296, target 150===================
17-02-28 19:40:40.535 -08 000000035 INF: ===================Laser 1 power 1019, target 999===================
17-02-28 19:40:40.535 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:40.535 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:40.595 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:40.596 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0288mW\r\n
17-02-28 19:40:40.596 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0951mW\r\n
17-02-28 19:40:40.596 -08 000000093 INF: ===================Laser 2 power 296, target 150===================
17-02-28 19:40:40.596 -08 000000035 INF: ===================Laser 1 power 1019, target 999===================
17-02-28 19:40:40.597 -08 000000093 INF: Laser 2 power 288, target 150
17-02-28 19:40:40.597 -08 000000035 INF: Laser 1 power 951, target 999
17-02-28 19:40:40.597 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:40.597 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:40.597 -08 000000093 INF: ===================Laser 2 power 288, target 150===================
17-02-28 19:40:40.597 -08 000000035 INF: ===================Laser 1 power 951, target 999===================
17-02-28 19:40:40.845 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:40.907 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:41.097 -08 000000035 INF: ===================Laser 1 power 951, target 999===================
17-02-28 19:40:41.097 -08 000000093 INF: ===================Laser 2 power 288, target 150===================
17-02-28 19:40:41.097 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:41.097 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:41.157 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0903mW\r\n
17-02-28 19:40:41.157 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:41.157 -08 000000035 INF: ===================Laser 1 power 951, target 999===================
17-02-28 19:40:41.158 -08 000000035 INF: Laser 1 power 903, target 999
17-02-28 19:40:41.158 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:41.158 -08 000000035 INF: ===================Laser 1 power 903, target 999===================
17-02-28 19:40:41.159 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0280mW\r\n
17-02-28 19:40:41.159 -08 000000093 INF: ===================Laser 2 power 288, target 150===================
17-02-28 19:40:41.160 -08 000000093 INF: Laser 2 power 280, target 150
17-02-28 19:40:41.160 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:41.160 -08 000000093 INF: ===================Laser 2 power 280, target 150===================
17-02-28 19:40:41.220 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:41.470 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:41.531 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:41.658 -08 000000035 INF: ===================Laser 1 power 903, target 999===================
17-02-28 19:40:41.658 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:41.660 -08 000000093 INF: ===================Laser 2 power 280, target 150===================
17-02-28 19:40:41.660 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:41.720 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0271mW\r\n
17-02-28 19:40:41.720 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0898mW\r\n
17-02-28 19:40:41.720 -08 000000093 INF: ===================Laser 2 power 280, target 150===================
17-02-28 19:40:41.720 -08 000000035 INF: ===================Laser 1 power 903, target 999===================
17-02-28 19:40:41.721 -08 000000093 INF: Laser 2 power 271, target 150
17-02-28 19:40:41.721 -08 000000035 INF: Laser 1 power 898, target 999
17-02-28 19:40:41.721 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:41.721 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:41.721 -08 000000093 INF: ===================Laser 2 power 271, target 150===================
17-02-28 19:40:41.721 -08 000000035 INF: ===================Laser 1 power 898, target 999===================
17-02-28 19:40:41.781 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:41.844 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:42.094 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:42.154 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:42.221 -08 000000093 INF: ===================Laser 2 power 271, target 150===================
17-02-28 19:40:42.221 -08 000000035 INF: ===================Laser 1 power 898, target 999===================
17-02-28 19:40:42.221 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:42.221 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:42.280 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0907mW\r\n
17-02-28 19:40:42.280 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0260mW\r\n
17-02-28 19:40:42.280 -08 000000035 INF: ===================Laser 1 power 898, target 999===================
17-02-28 19:40:42.280 -08 000000093 INF: ===================Laser 2 power 271, target 150===================
17-02-28 19:40:42.281 -08 000000035 INF: Laser 1 power 907, target 999
17-02-28 19:40:42.281 -08 000000093 INF: Laser 2 power 260, target 150
17-02-28 19:40:42.281 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:42.281 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:42.281 -08 000000035 INF: ===================Laser 1 power 907, target 999===================
17-02-28 19:40:42.281 -08 000000093 INF: ===================Laser 2 power 260, target 150===================
17-02-28 19:40:42.404 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:42.465 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:42.715 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:42.779 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:42.781 -08 000000035 INF: ===================Laser 1 power 907, target 999===================
17-02-28 19:40:42.781 -08 000000093 INF: ===================Laser 2 power 260, target 150===================
17-02-28 19:40:42.781 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:42.781 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:42.842 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0253mW\r\n
17-02-28 19:40:42.842 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0926mW\r\n
17-02-28 19:40:42.842 -08 000000093 INF: ===================Laser 2 power 260, target 150===================
17-02-28 19:40:42.842 -08 000000035 INF: ===================Laser 1 power 907, target 999===================
17-02-28 19:40:42.843 -08 000000093 INF: Laser 2 power 253, target 150
17-02-28 19:40:42.843 -08 000000035 INF: Laser 1 power 926, target 999
17-02-28 19:40:42.843 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:42.843 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:42.843 -08 000000093 INF: ===================Laser 2 power 253, target 150===================
17-02-28 19:40:42.843 -08 000000035 INF: ===================Laser 1 power 926, target 999===================
17-02-28 19:40:43.029 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:43.094 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:43.094 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:43.094 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:43.094 -08 000000018 INF: WaitCommand(5000) start
17-02-28 19:40:43.095 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6), Delay 5 of 5 seconds left===================
17-02-28 19:40:43.343 -08 000000093 INF: ===================Laser 2 power 253, target 150===================
17-02-28 19:40:43.343 -08 000000035 INF: ===================Laser 1 power 926, target 999===================
17-02-28 19:40:43.343 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:43.343 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:43.402 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0240mW\r\n
17-02-28 19:40:43.402 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0947mW\r\n
17-02-28 19:40:43.402 -08 000000093 INF: ===================Laser 2 power 253, target 150===================
17-02-28 19:40:43.402 -08 000000035 INF: ===================Laser 1 power 926, target 999===================
17-02-28 19:40:43.403 -08 000000093 INF: Laser 2 power 240, target 150
17-02-28 19:40:43.403 -08 000000035 INF: Laser 1 power 947, target 999
17-02-28 19:40:43.403 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:43.403 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:43.403 -08 000000093 INF: ===================Laser 2 power 240, target 150===================
17-02-28 19:40:43.403 -08 000000035 INF: ===================Laser 1 power 947, target 999===================
17-02-28 19:40:43.903 -08 000000093 INF: ===================Laser 2 power 240, target 150===================
17-02-28 19:40:43.903 -08 000000035 INF: ===================Laser 1 power 947, target 999===================
17-02-28 19:40:43.903 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:43.903 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:43.966 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0227mW\r\n
17-02-28 19:40:43.966 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0973mW\r\n
17-02-28 19:40:43.966 -08 000000093 INF: ===================Laser 2 power 240, target 150===================
17-02-28 19:40:43.966 -08 000000035 INF: ===================Laser 1 power 947, target 999===================
17-02-28 19:40:43.967 -08 000000093 INF: Laser 2 power 227, target 150
17-02-28 19:40:43.967 -08 000000035 INF: Laser 1 power 973, target 999
17-02-28 19:40:43.967 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:43.967 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:43.967 -08 000000093 INF: ===================Laser 2 power 227, target 150===================
17-02-28 19:40:43.967 -08 000000035 INF: ===================Laser 1 power 973, target 999===================
17-02-28 19:40:44.095 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:44.095 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6), Delay 4 of 5 seconds left===================
17-02-28 19:40:44.467 -08 000000035 INF: ===================Laser 1 power 973, target 999===================
17-02-28 19:40:44.467 -08 000000093 INF: ===================Laser 2 power 227, target 150===================
17-02-28 19:40:44.467 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:44.467 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:44.528 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0216mW\r\n
17-02-28 19:40:44.528 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0998mW\r\n
17-02-28 19:40:44.528 -08 000000093 INF: ===================Laser 2 power 227, target 150===================
17-02-28 19:40:44.528 -08 000000035 INF: ===================Laser 1 power 973, target 999===================
17-02-28 19:40:44.529 -08 000000093 INF: Laser 2 power 216, target 150
17-02-28 19:40:44.529 -08 000000035 INF: Laser 1 power 998, target 999
17-02-28 19:40:44.529 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:44.529 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:44.529 -08 000000093 INF: ===================Laser 2 power 216, target 150===================
17-02-28 19:40:44.529 -08 000000035 INF: ===================Laser 1 power 998, target 999===================
17-02-28 19:40:45.029 -08 000000035 INF: ===================Laser 1 power 998, target 999===================
17-02-28 19:40:45.029 -08 000000093 INF: ===================Laser 2 power 216, target 150===================
17-02-28 19:40:45.029 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:45.029 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:45.089 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0201mW\r\n
17-02-28 19:40:45.089 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1017mW\r\n
17-02-28 19:40:45.089 -08 000000093 INF: ===================Laser 2 power 216, target 150===================
17-02-28 19:40:45.089 -08 000000035 INF: ===================Laser 1 power 998, target 999===================
17-02-28 19:40:45.090 -08 000000093 INF: Laser 2 power 201, target 150
17-02-28 19:40:45.090 -08 000000035 INF: Laser 1 power 1017, target 999
17-02-28 19:40:45.090 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:45.090 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:45.090 -08 000000093 INF: ===================Laser 2 power 201, target 150===================
17-02-28 19:40:45.090 -08 000000035 INF: ===================Laser 1 power 1017, target 999===================
17-02-28 19:40:45.095 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:45.095 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6), Delay 3 of 5 seconds left===================
17-02-28 19:40:45.590 -08 000000035 INF: ===================Laser 1 power 1017, target 999===================
17-02-28 19:40:45.590 -08 000000093 INF: ===================Laser 2 power 201, target 150===================
17-02-28 19:40:45.590 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:45.590 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:45.649 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1033mW\r\n
17-02-28 19:40:45.649 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0188mW\r\n
17-02-28 19:40:45.649 -08 000000035 INF: ===================Laser 1 power 1017, target 999===================
17-02-28 19:40:45.649 -08 000000093 INF: ===================Laser 2 power 201, target 150===================
17-02-28 19:40:45.650 -08 000000035 INF: Laser 1 power 1033, target 999
17-02-28 19:40:45.650 -08 000000093 INF: Laser 2 power 188, target 150
17-02-28 19:40:45.650 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:45.650 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:45.650 -08 000000035 INF: ===================Laser 1 power 1033, target 999===================
17-02-28 19:40:45.650 -08 000000093 INF: ===================Laser 2 power 188, target 150===================
17-02-28 19:40:46.096 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:46.096 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6), Delay 2 of 5 seconds left===================
17-02-28 19:40:46.151 -08 000000035 INF: ===================Laser 1 power 1033, target 999===================
17-02-28 19:40:46.151 -08 000000093 INF: ===================Laser 2 power 188, target 150===================
17-02-28 19:40:46.151 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:46.151 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:46.211 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1040mW\r\n
17-02-28 19:40:46.211 -08 000000035 INF: ===================Laser 1 power 1033, target 999===================
17-02-28 19:40:46.212 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0174mW\r\n
17-02-28 19:40:46.212 -08 000000035 INF: Laser 1 power 1040, target 999
17-02-28 19:40:46.212 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:46.212 -08 000000093 INF: ===================Laser 2 power 188, target 150===================
17-02-28 19:40:46.212 -08 000000035 INF: ===================Laser 1 power 1040, target 999===================
17-02-28 19:40:46.213 -08 000000093 INF: Laser 2 power 174, target 150
17-02-28 19:40:46.213 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:46.213 -08 000000093 INF: ===================Laser 2 power 174, target 150===================
17-02-28 19:40:46.712 -08 000000035 INF: ===================Laser 1 power 1040, target 999===================
17-02-28 19:40:46.712 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:46.713 -08 000000093 INF: ===================Laser 2 power 174, target 150===================
17-02-28 19:40:46.713 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:46.776 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1042mW\r\n
17-02-28 19:40:46.776 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0155mW\r\n
17-02-28 19:40:46.776 -08 000000035 INF: ===================Laser 1 power 1040, target 999===================
17-02-28 19:40:46.776 -08 000000093 INF: ===================Laser 2 power 174, target 150===================
17-02-28 19:40:46.777 -08 000000035 INF: Laser 1 power 1042, target 999
17-02-28 19:40:46.777 -08 000000093 INF: Laser 2 power 155, target 150
17-02-28 19:40:46.777 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:46.777 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:46.777 -08 000000035 INF: ===================Laser 1 power 1042, target 999===================
17-02-28 19:40:46.777 -08 000000093 INF: ===================Laser 2 power 155, target 150===================
17-02-28 19:40:47.096 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:47.096 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6), Delay 1 of 5 seconds left===================
17-02-28 19:40:47.277 -08 000000093 INF: ===================Laser 2 power 155, target 150===================
17-02-28 19:40:47.277 -08 000000035 INF: ===================Laser 1 power 1042, target 999===================
17-02-28 19:40:47.277 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:47.277 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:47.335 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0143mW\r\n
17-02-28 19:40:47.335 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1038mW\r\n
17-02-28 19:40:47.335 -08 000000093 INF: ===================Laser 2 power 155, target 150===================
17-02-28 19:40:47.335 -08 000000035 INF: ===================Laser 1 power 1042, target 999===================
17-02-28 19:40:47.336 -08 000000093 INF: Laser 2 power 143, target 150
17-02-28 19:40:47.336 -08 000000035 INF: Laser 1 power 1038, target 999
17-02-28 19:40:47.336 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:47.336 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:47.336 -08 000000093 INF: ===================Laser 2 power 143, target 150===================
17-02-28 19:40:47.336 -08 000000035 INF: ===================Laser 1 power 1038, target 999===================
17-02-28 19:40:47.836 -08 000000035 INF: ===================Laser 1 power 1038, target 999===================
17-02-28 19:40:47.836 -08 000000093 INF: ===================Laser 2 power 143, target 150===================
17-02-28 19:40:47.836 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:47.836 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:47.896 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0132mW\r\n
17-02-28 19:40:47.896 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1018mW\r\n
17-02-28 19:40:47.896 -08 000000093 INF: ===================Laser 2 power 143, target 150===================
17-02-28 19:40:47.896 -08 000000035 INF: ===================Laser 1 power 1038, target 999===================
17-02-28 19:40:47.897 -08 000000093 INF: Laser 2 power 132, target 150
17-02-28 19:40:47.897 -08 000000035 INF: Laser 1 power 1018, target 999
17-02-28 19:40:47.897 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:47.897 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:47.897 -08 000000093 INF: ===================Laser 2 power 132, target 150===================
17-02-28 19:40:47.897 -08 000000035 INF: ===================Laser 1 power 1018, target 999===================
17-02-28 19:40:48.096 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:48.096 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:48.096 -08 000000018 INF: WaitCommand(5000) end
17-02-28 19:40:48.096 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:48.195 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:40:48.271 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`18240 (0x03)\r\n(0xFF)
17-02-28 19:40:48.271 -08 000000018 INF: Current Position of Pump is: 18240
17-02-28 19:40:48.371 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:40:48.397 -08 000000093 INF: ===================Laser 2 power 132, target 150===================
17-02-28 19:40:48.397 -08 000000035 INF: ===================Laser 1 power 1018, target 999===================
17-02-28 19:40:48.397 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:48.397 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:48.458 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`18240 (0x03)\r\n(0xFF)
17-02-28 19:40:48.458 -08 000000018 INF: Current Position of Pump is: 18240
17-02-28 19:40:48.458 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6), Dispensing port PortC===================
17-02-28 19:40:48.459 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0982mW\r\n
17-02-28 19:40:48.459 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0119mW\r\n
17-02-28 19:40:48.459 -08 000000035 INF: ===================Laser 1 power 1018, target 999===================
17-02-28 19:40:48.459 -08 000000093 INF: ===================Laser 2 power 132, target 150===================
17-02-28 19:40:48.460 -08 000000035 INF: Laser 1 power 982, target 999
17-02-28 19:40:48.460 -08 000000093 INF: Laser 2 power 119, target 150
17-02-28 19:40:48.460 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:48.460 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:48.460 -08 000000035 INF: ===================Laser 1 power 982, target 999===================
17-02-28 19:40:48.460 -08 000000093 INF: ===================Laser 2 power 119, target 150===================
17-02-28 19:40:48.558 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V8000OD18240R\r
17-02-28 19:40:48.644 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:48.744 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:48.833 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:48.960 -08 000000093 INF: ===================Laser 2 power 119, target 150===================
17-02-28 19:40:48.960 -08 000000035 INF: ===================Laser 1 power 982, target 999===================
17-02-28 19:40:48.960 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:48.960 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:49.020 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0972mW\r\n
17-02-28 19:40:49.020 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0112mW\r\n
17-02-28 19:40:49.020 -08 000000035 INF: ===================Laser 1 power 982, target 999===================
17-02-28 19:40:49.020 -08 000000093 INF: ===================Laser 2 power 119, target 150===================
17-02-28 19:40:49.021 -08 000000035 INF: Laser 1 power 972, target 999
17-02-28 19:40:49.021 -08 000000093 INF: Laser 2 power 112, target 150
17-02-28 19:40:49.021 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:49.021 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:49.021 -08 000000035 INF: ===================Laser 1 power 972, target 999===================
17-02-28 19:40:49.021 -08 000000093 INF: ===================Laser 2 power 112, target 150===================
17-02-28 19:40:49.083 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:49.143 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:49.393 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:49.457 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:49.521 -08 000000093 INF: ===================Laser 2 power 112, target 150===================
17-02-28 19:40:49.521 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:49.521 -08 000000035 INF: ===================Laser 1 power 972, target 999===================
17-02-28 19:40:49.522 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:49.583 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0111mW\r\n
17-02-28 19:40:49.583 -08 000000093 INF: ===================Laser 2 power 112, target 150===================
17-02-28 19:40:49.584 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0970mW\r\n
17-02-28 19:40:49.584 -08 000000093 INF: Laser 2 power 111, target 150
17-02-28 19:40:49.584 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:49.584 -08 000000035 INF: ===================Laser 1 power 972, target 999===================
17-02-28 19:40:49.584 -08 000000093 INF: ===================Laser 2 power 111, target 150===================
17-02-28 19:40:49.585 -08 000000035 INF: Laser 1 power 970, target 999
17-02-28 19:40:49.585 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:49.585 -08 000000035 INF: ===================Laser 1 power 970, target 999===================
17-02-28 19:40:49.707 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:49.767 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:50.017 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:50.081 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:50.084 -08 000000093 INF: ===================Laser 2 power 111, target 150===================
17-02-28 19:40:50.084 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:50.085 -08 000000035 INF: ===================Laser 1 power 970, target 999===================
17-02-28 19:40:50.085 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:50.144 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0971mW\r\n
17-02-28 19:40:50.144 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0117mW\r\n
17-02-28 19:40:50.144 -08 000000035 INF: ===================Laser 1 power 970, target 999===================
17-02-28 19:40:50.144 -08 000000093 INF: ===================Laser 2 power 111, target 150===================
17-02-28 19:40:50.145 -08 000000035 INF: Laser 1 power 971, target 999
17-02-28 19:40:50.145 -08 000000093 INF: Laser 2 power 117, target 150
17-02-28 19:40:50.145 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:50.145 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:50.145 -08 000000035 INF: ===================Laser 1 power 971, target 999===================
17-02-28 19:40:50.145 -08 000000093 INF: ===================Laser 2 power 117, target 150===================
17-02-28 19:40:50.331 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:50.391 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:50.641 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:50.645 -08 000000035 INF: ===================Laser 1 power 971, target 999===================
17-02-28 19:40:50.645 -08 000000093 INF: ===================Laser 2 power 117, target 150===================
17-02-28 19:40:50.645 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:50.645 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:50.705 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:50.706 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0128mW\r\n
17-02-28 19:40:50.706 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0976mW\r\n
17-02-28 19:40:50.706 -08 000000093 INF: ===================Laser 2 power 117, target 150===================
17-02-28 19:40:50.706 -08 000000035 INF: ===================Laser 1 power 971, target 999===================
17-02-28 19:40:50.707 -08 000000093 INF: Laser 2 power 128, target 150
17-02-28 19:40:50.707 -08 000000035 INF: Laser 1 power 976, target 999
17-02-28 19:40:50.707 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:50.707 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:50.707 -08 000000093 INF: ===================Laser 2 power 128, target 150===================
17-02-28 19:40:50.707 -08 000000035 INF: ===================Laser 1 power 976, target 999===================
17-02-28 19:40:50.955 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:51.015 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:51.207 -08 000000035 INF: ===================Laser 1 power 976, target 999===================
17-02-28 19:40:51.207 -08 000000093 INF: ===================Laser 2 power 128, target 150===================
17-02-28 19:40:51.207 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:51.207 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:51.265 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0983mW\r\n
17-02-28 19:40:51.265 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0138mW\r\n
17-02-28 19:40:51.265 -08 000000035 INF: ===================Laser 1 power 976, target 999===================
17-02-28 19:40:51.265 -08 000000093 INF: ===================Laser 2 power 128, target 150===================
17-02-28 19:40:51.265 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:51.266 -08 000000035 INF: Laser 1 power 983, target 999
17-02-28 19:40:51.266 -08 000000093 INF: Laser 2 power 138, target 150
17-02-28 19:40:51.266 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:51.266 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:51.266 -08 000000035 INF: ===================Laser 1 power 983, target 999===================
17-02-28 19:40:51.266 -08 000000093 INF: ===================Laser 2 power 138, target 150===================
17-02-28 19:40:51.329 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:51.329 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HB2 (6)===================
17-02-28 19:40:51.329 -08 000000018 INF: KloehnPump A (KLOEHNA): Waiting 1000 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-02-28 19:40:51.766 -08 000000093 INF: ===================Laser 2 power 138, target 150===================
17-02-28 19:40:51.766 -08 000000035 INF: ===================Laser 1 power 983, target 999===================
17-02-28 19:40:51.766 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:51.766 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:51.828 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0989mW\r\n
17-02-28 19:40:51.828 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0149mW\r\n
17-02-28 19:40:51.828 -08 000000035 INF: ===================Laser 1 power 983, target 999===================
17-02-28 19:40:51.828 -08 000000093 INF: ===================Laser 2 power 138, target 150===================
17-02-28 19:40:51.829 -08 000000035 INF: Laser 1 power 989, target 999
17-02-28 19:40:51.829 -08 000000093 INF: Laser 2 power 149, target 150
17-02-28 19:40:51.829 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:51.829 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:51.829 -08 000000035 INF: ===================Laser 1 power 989, target 999===================
17-02-28 19:40:51.829 -08 000000093 INF: ===================Laser 2 power 149, target 150===================
17-02-28 19:40:52.329 -08 000000035 INF: ===================Laser 1 power 989, target 999===================
17-02-28 19:40:52.329 -08 000000093 INF: ===================Laser 2 power 149, target 150===================
17-02-28 19:40:52.329 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:52.329 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:52.390 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0997mW\r\n
17-02-28 19:40:52.390 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0159mW\r\n
17-02-28 19:40:52.390 -08 000000035 INF: ===================Laser 1 power 989, target 999===================
17-02-28 19:40:52.390 -08 000000093 INF: ===================Laser 2 power 149, target 150===================
17-02-28 19:40:52.391 -08 000000035 INF: Laser 1 power 997, target 999
17-02-28 19:40:52.391 -08 000000093 INF: Laser 2 power 159, target 150
17-02-28 19:40:52.391 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:52.391 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:52.391 -08 000000035 INF: ===================Laser 1 power 997, target 999===================
17-02-28 19:40:52.391 -08 000000093 INF: ===================Laser 2 power 159, target 150===================
17-02-28 19:40:52.429 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1IR\r
17-02-28 19:40:52.514 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:52.614 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:52.638 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:52.888 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:52.891 -08 000000093 INF: ===================Laser 2 power 159, target 150===================
17-02-28 19:40:52.891 -08 000000035 INF: ===================Laser 1 power 997, target 999===================
17-02-28 19:40:52.891 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:52.891 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:52.951 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:52.951 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:52.951 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Closing shutoff valve===================
17-02-28 19:40:52.952 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1003mW\r\n
17-02-28 19:40:52.952 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0166mW\r\n
17-02-28 19:40:52.952 -08 000000035 INF: ===================Laser 1 power 997, target 999===================
17-02-28 19:40:52.952 -08 000000093 INF: ===================Laser 2 power 159, target 150===================
17-02-28 19:40:52.953 -08 000000035 INF: Laser 1 power 1003, target 999
17-02-28 19:40:52.953 -08 000000093 INF: Laser 2 power 166, target 150
17-02-28 19:40:52.953 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:52.953 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:52.953 -08 000000035 INF: ===================Laser 1 power 1003, target 999===================
17-02-28 19:40:52.953 -08 000000093 INF: ===================Laser 2 power 166, target 150===================
17-02-28 19:40:53.453 -08 000000093 INF: ===================Laser 2 power 166, target 150===================
17-02-28 19:40:53.453 -08 000000035 INF: ===================Laser 1 power 1003, target 999===================
17-02-28 19:40:53.453 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:53.453 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:53.514 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1007mW\r\n
17-02-28 19:40:53.514 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0168mW\r\n
17-02-28 19:40:53.514 -08 000000035 INF: ===================Laser 1 power 1003, target 999===================
17-02-28 19:40:53.514 -08 000000093 INF: ===================Laser 2 power 166, target 150===================
17-02-28 19:40:53.515 -08 000000035 INF: Laser 1 power 1007, target 999
17-02-28 19:40:53.515 -08 000000093 INF: Laser 2 power 168, target 150
17-02-28 19:40:53.515 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:53.515 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:53.515 -08 000000035 INF: ===================Laser 1 power 1007, target 999===================
17-02-28 19:40:53.515 -08 000000093 INF: ===================Laser 2 power 168, target 150===================
17-02-28 19:40:53.573 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:53.573 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:53.574 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:53.574 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Flowcell Temp 55°===================
17-02-28 19:40:53.575 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Flowcell Temp 55°===================
17-02-28 19:40:53.575 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Flowcell Temp 55°, FC temperature to 55°===================
17-02-28 19:40:53.821 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Flowcell Temp 55°===================
17-02-28 19:40:53.821 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Flowcell Temp 55°===================
17-02-28 19:40:53.822 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Flowcell Temp 55°===================
17-02-28 19:40:53.823 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Flowcell Temp 55°===================
17-02-28 19:40:53.823 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:53.823 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:53.824 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:53.824 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:53.885 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:53.885 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Selecting Reagent HCM (7)===================
17-02-28 19:40:53.885 -08 000000018 INF: Valve A1: Go to position 7
17-02-28 19:40:53.885 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:40:53.947 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 6\r
17-02-28 19:40:53.947 -08 000000018 INF: Valve A1: 25.597 seconds since last move, > 10.000 seconds required between moves
17-02-28 19:40:53.947 -08 000000018 INF: Valve A1: Taking shortest path 'CW' from 6 to 7
17-02-28 19:40:53.947 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CW7\r
17-02-28 19:40:53.947 -08 000000018 INF: SerialPort A1 (VICIA1): Recv  (discarded)
17-02-28 19:40:53.947 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:40:54.015 -08 000000093 INF: ===================Laser 2 power 168, target 150===================
17-02-28 19:40:54.015 -08 000000035 INF: ===================Laser 1 power 1007, target 999===================
17-02-28 19:40:54.015 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:54.015 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:54.075 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0167mW\r\n
17-02-28 19:40:54.075 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1010mW\r\n
17-02-28 19:40:54.075 -08 000000093 INF: ===================Laser 2 power 168, target 150===================
17-02-28 19:40:54.075 -08 000000035 INF: ===================Laser 1 power 1007, target 999===================
17-02-28 19:40:54.076 -08 000000093 INF: Laser 2 power 167, target 150
17-02-28 19:40:54.076 -08 000000035 INF: Laser 1 power 1010, target 999
17-02-28 19:40:54.076 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:54.076 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:54.076 -08 000000093 INF: ===================Laser 2 power 167, target 150===================
17-02-28 19:40:54.076 -08 000000035 INF: ===================Laser 1 power 1010, target 999===================
17-02-28 19:40:54.198 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 7\r
17-02-28 19:40:54.198 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:54.198 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Opening shutoff valve===================
17-02-28 19:40:54.576 -08 000000093 INF: ===================Laser 2 power 167, target 150===================
17-02-28 19:40:54.576 -08 000000035 INF: ===================Laser 1 power 1010, target 999===================
17-02-28 19:40:54.576 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:54.576 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:54.636 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0163mW\r\n
17-02-28 19:40:54.636 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1011mW\r\n
17-02-28 19:40:54.636 -08 000000093 INF: ===================Laser 2 power 167, target 150===================
17-02-28 19:40:54.636 -08 000000035 INF: ===================Laser 1 power 1010, target 999===================
17-02-28 19:40:54.637 -08 000000093 INF: Laser 2 power 163, target 150
17-02-28 19:40:54.637 -08 000000035 INF: Laser 1 power 1011, target 999
17-02-28 19:40:54.637 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:54.637 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:54.637 -08 000000093 INF: ===================Laser 2 power 163, target 150===================
17-02-28 19:40:54.637 -08 000000035 INF: ===================Laser 1 power 1011, target 999===================
17-02-28 19:40:54.695 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:40:54.696 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:40:54.696 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:54.759 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:54.767 -08 000000018 INF: KloehnPump A (KLOEHNA): Pumping from 7, aspirate port PortB, aspiration rate 250, dispense rate 2500, volume 62, calling command "Pumping to Flowcell #1 pump index #0", State=Running, Depth=2, Children=0, Thread="Run", Parent="Deblock", Type=SameThreadBlocking, solution delay 5000
17-02-28 19:40:54.859 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:40:54.948 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`0 (0x03)\r\n(0xFF)
17-02-28 19:40:54.948 -08 000000018 INF: Current Position of Pump is: 0
17-02-28 19:40:55.048 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1OR\r
17-02-28 19:40:55.134 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:55.137 -08 000000093 INF: ===================Laser 2 power 163, target 150===================
17-02-28 19:40:55.137 -08 000000035 INF: ===================Laser 1 power 1011, target 999===================
17-02-28 19:40:55.137 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:55.137 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:55.197 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1010mW\r\n
17-02-28 19:40:55.197 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0156mW\r\n
17-02-28 19:40:55.197 -08 000000035 INF: ===================Laser 1 power 1011, target 999===================
17-02-28 19:40:55.197 -08 000000093 INF: ===================Laser 2 power 163, target 150===================
17-02-28 19:40:55.198 -08 000000035 INF: Laser 1 power 1010, target 999
17-02-28 19:40:55.198 -08 000000093 INF: Laser 2 power 156, target 150
17-02-28 19:40:55.198 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:55.198 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:55.198 -08 000000035 INF: ===================Laser 1 power 1010, target 999===================
17-02-28 19:40:55.198 -08 000000093 INF: ===================Laser 2 power 156, target 150===================
17-02-28 19:40:55.234 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:55.291 -08 000000060 INF: RunCopyService queue size at 2/28/2017 7:40:55 PM is 2
17-02-28 19:40:55.322 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:55.572 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:55.634 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:55.698 -08 000000093 INF: ===================Laser 2 power 156, target 150===================
17-02-28 19:40:55.698 -08 000000035 INF: ===================Laser 1 power 1010, target 999===================
17-02-28 19:40:55.698 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:55.698 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:55.734 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V10000A0R\r
17-02-28 19:40:55.759 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0151mW\r\n
17-02-28 19:40:55.759 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1009mW\r\n
17-02-28 19:40:55.759 -08 000000093 INF: ===================Laser 2 power 156, target 150===================
17-02-28 19:40:55.759 -08 000000035 INF: ===================Laser 1 power 1010, target 999===================
17-02-28 19:40:55.760 -08 000000093 INF: Laser 2 power 151, target 150
17-02-28 19:40:55.760 -08 000000035 INF: Laser 1 power 1009, target 999
17-02-28 19:40:55.760 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:55.760 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:55.760 -08 000000093 INF: ===================Laser 2 power 151, target 150===================
17-02-28 19:40:55.760 -08 000000035 INF: ===================Laser 1 power 1009, target 999===================
17-02-28 19:40:55.820 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:55.920 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:55.944 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:40:55.944 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7), Aspirating port PortB===================
17-02-28 19:40:56.045 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V800IP11904R\r
17-02-28 19:40:56.134 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:56.234 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:56.261 -08 000000035 INF: ===================Laser 1 power 1009, target 999===================
17-02-28 19:40:56.261 -08 000000093 INF: ===================Laser 2 power 151, target 150===================
17-02-28 19:40:56.261 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:56.261 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:56.320 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:56.321 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1006mW\r\n
17-02-28 19:40:56.321 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0146mW\r\n
17-02-28 19:40:56.321 -08 000000035 INF: ===================Laser 1 power 1009, target 999===================
17-02-28 19:40:56.321 -08 000000093 INF: ===================Laser 2 power 151, target 150===================
17-02-28 19:40:56.322 -08 000000035 INF: Laser 1 power 1006, target 999
17-02-28 19:40:56.322 -08 000000093 INF: Laser 2 power 146, target 150
17-02-28 19:40:56.322 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:56.322 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:56.322 -08 000000035 INF: ===================Laser 1 power 1006, target 999===================
17-02-28 19:40:56.322 -08 000000093 INF: ===================Laser 2 power 146, target 150===================
17-02-28 19:40:56.570 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:56.634 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:56.822 -08 000000093 INF: ===================Laser 2 power 146, target 150===================
17-02-28 19:40:56.822 -08 000000035 INF: ===================Laser 1 power 1006, target 999===================
17-02-28 19:40:56.822 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:56.822 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:56.882 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1004mW\r\n
17-02-28 19:40:56.882 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0143mW\r\n
17-02-28 19:40:56.882 -08 000000035 INF: ===================Laser 1 power 1006, target 999===================
17-02-28 19:40:56.882 -08 000000093 INF: ===================Laser 2 power 146, target 150===================
17-02-28 19:40:56.883 -08 000000035 INF: Laser 1 power 1004, target 999
17-02-28 19:40:56.883 -08 000000093 INF: Laser 2 power 143, target 150
17-02-28 19:40:56.883 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:56.883 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:56.883 -08 000000035 INF: ===================Laser 1 power 1004, target 999===================
17-02-28 19:40:56.883 -08 000000093 INF: ===================Laser 2 power 143, target 150===================
17-02-28 19:40:56.884 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:56.945 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:57.195 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:57.257 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:57.383 -08 000000035 INF: ===================Laser 1 power 1004, target 999===================
17-02-28 19:40:57.383 -08 000000093 INF: ===================Laser 2 power 143, target 150===================
17-02-28 19:40:57.383 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:57.383 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:57.446 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0140mW\r\n
17-02-28 19:40:57.446 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  1001mW\r\n
17-02-28 19:40:57.446 -08 000000093 INF: ===================Laser 2 power 143, target 150===================
17-02-28 19:40:57.446 -08 000000035 INF: ===================Laser 1 power 1004, target 999===================
17-02-28 19:40:57.447 -08 000000093 INF: Laser 2 power 140, target 150
17-02-28 19:40:57.447 -08 000000035 INF: Laser 1 power 1001, target 999
17-02-28 19:40:57.447 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:57.447 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:57.447 -08 000000093 INF: ===================Laser 2 power 140, target 150===================
17-02-28 19:40:57.447 -08 000000035 INF: ===================Laser 1 power 1001, target 999===================
17-02-28 19:40:57.507 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:57.567 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:57.817 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:57.879 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:57.947 -08 000000035 INF: ===================Laser 1 power 1001, target 999===================
17-02-28 19:40:57.947 -08 000000093 INF: ===================Laser 2 power 140, target 150===================
17-02-28 19:40:57.947 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:57.947 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:58.007 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0998mW\r\n
17-02-28 19:40:58.007 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0141mW\r\n
17-02-28 19:40:58.007 -08 000000035 INF: ===================Laser 1 power 1001, target 999===================
17-02-28 19:40:58.007 -08 000000093 INF: ===================Laser 2 power 140, target 150===================
17-02-28 19:40:58.008 -08 000000035 INF: Laser 1 power 998, target 999
17-02-28 19:40:58.008 -08 000000093 INF: Laser 2 power 141, target 150
17-02-28 19:40:58.008 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:58.008 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:58.008 -08 000000035 INF: ===================Laser 1 power 998, target 999===================
17-02-28 19:40:58.008 -08 000000093 INF: ===================Laser 2 power 141, target 150===================
17-02-28 19:40:58.131 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:58.191 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:58.441 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:58.504 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:58.508 -08 000000035 INF: ===================Laser 1 power 998, target 999===================
17-02-28 19:40:58.508 -08 000000093 INF: ===================Laser 2 power 141, target 150===================
17-02-28 19:40:58.508 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:58.508 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:58.567 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0996mW\r\n
17-02-28 19:40:58.567 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0142mW\r\n
17-02-28 19:40:58.567 -08 000000035 INF: ===================Laser 1 power 998, target 999===================
17-02-28 19:40:58.567 -08 000000093 INF: ===================Laser 2 power 141, target 150===================
17-02-28 19:40:58.568 -08 000000035 INF: Laser 1 power 996, target 999
17-02-28 19:40:58.568 -08 000000093 INF: Laser 2 power 142, target 150
17-02-28 19:40:58.568 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:58.568 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:58.568 -08 000000035 INF: ===================Laser 1 power 996, target 999===================
17-02-28 19:40:58.568 -08 000000093 INF: ===================Laser 2 power 142, target 150===================
17-02-28 19:40:58.754 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:58.815 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:59.067 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:59.068 -08 000000035 INF: ===================Laser 1 power 996, target 999===================
17-02-28 19:40:59.068 -08 000000093 INF: ===================Laser 2 power 142, target 150===================
17-02-28 19:40:59.068 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:40:59.068 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:59.129 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:59.130 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0143mW\r\n
17-02-28 19:40:59.130 -08 000000035 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0995mW\r\n
17-02-28 19:40:59.130 -08 000000093 INF: ===================Laser 2 power 142, target 150===================
17-02-28 19:40:59.130 -08 000000035 INF: ===================Laser 1 power 996, target 999===================
17-02-28 19:40:59.131 -08 000000093 INF: Laser 2 power 143, target 150
17-02-28 19:40:59.131 -08 000000035 INF: Laser 1 power 995, target 999
17-02-28 19:40:59.131 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:59.131 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:59.131 -08 000000035 INF: Laser 1 reached close enough to target power 999 mW after 27.00 seconds
17-02-28 19:40:59.131 -08 000000093 INF: ===================Laser 2 power 143, target 150===================
17-02-28 19:40:59.131 -08 000000035 INF: ===================Set Laser1 Power for Auto Tilt===================
17-02-28 19:40:59.132 -08 000000035 INF: ======================================
17-02-28 19:40:59.379 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:59.441 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:40:59.631 -08 000000093 INF: ===================Laser 2 power 143, target 150===================
17-02-28 19:40:59.631 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:40:59.691 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0145mW\r\n
17-02-28 19:40:59.691 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:40:59.691 -08 000000093 INF: ===================Laser 2 power 143, target 150===================
17-02-28 19:40:59.692 -08 000000093 INF: Laser 2 power 145, target 150
17-02-28 19:40:59.692 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:40:59.692 -08 000000093 INF: ===================Laser 2 power 145, target 150===================
17-02-28 19:40:59.752 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:00.002 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:00.064 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:00.192 -08 000000093 INF: ===================Laser 2 power 145, target 150===================
17-02-28 19:41:00.192 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:00.253 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0149mW\r\n
17-02-28 19:41:00.253 -08 000000093 INF: ===================Laser 2 power 145, target 150===================
17-02-28 19:41:00.254 -08 000000093 INF: Laser 2 power 149, target 150
17-02-28 19:41:00.254 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:41:00.254 -08 000000093 INF: ===================Laser 2 power 149, target 150===================
17-02-28 19:41:00.314 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:00.375 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:00.625 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:00.687 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:00.754 -08 000000093 INF: ===================Laser 2 power 149, target 150===================
17-02-28 19:41:00.754 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:00.815 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0151mW\r\n
17-02-28 19:41:00.815 -08 000000093 INF: ===================Laser 2 power 149, target 150===================
17-02-28 19:41:00.816 -08 000000093 INF: Laser 2 power 151, target 150
17-02-28 19:41:00.816 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:41:00.816 -08 000000093 INF: ===================Laser 2 power 151, target 150===================
17-02-28 19:41:00.937 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:00.999 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:01.249 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:01.313 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:01.316 -08 000000093 INF: ===================Laser 2 power 151, target 150===================
17-02-28 19:41:01.316 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:01.376 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0153mW\r\n
17-02-28 19:41:01.376 -08 000000093 INF: ===================Laser 2 power 151, target 150===================
17-02-28 19:41:01.377 -08 000000093 INF: Laser 2 power 153, target 150
17-02-28 19:41:01.377 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:41:01.377 -08 000000093 INF: ===================Laser 2 power 153, target 150===================
17-02-28 19:41:01.563 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:01.625 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:01.875 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:01.877 -08 000000093 INF: ===================Laser 2 power 153, target 150===================
17-02-28 19:41:01.877 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:01.936 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:01.937 -08 000000093 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0153mW\r\n
17-02-28 19:41:01.937 -08 000000093 INF: ===================Laser 2 power 153, target 150===================
17-02-28 19:41:01.938 -08 000000093 INF: Laser 2 power 153, target 150
17-02-28 19:41:01.938 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt, LaserPowerPolling===================
17-02-28 19:41:01.938 -08 000000093 INF: Laser 2 reached close enough to target power 150 mW after 29.50 seconds
17-02-28 19:41:01.938 -08 000000093 INF: ===================Set Laser2 Power for Auto Tilt===================
17-02-28 19:41:01.939 -08 000000093 INF: ======================================
17-02-28 19:41:01.940 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:41:01.941 -08 000000042 INF: Compensator: Moving OutOfPath
17-02-28 19:41:01.941 -08 000000042 INF: FPGA: Xmit MIOCOMPR\n
17-02-28 19:41:02.186 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:02.248 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:02.309 -08 000000100 INF: FPGA: Recv MIOCOMPR
17-02-28 19:41:02.309 -08 000000042 INF: Compensator: Moved OutOfPath in 368 ms
17-02-28 19:41:02.309 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:02.310 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:02.310 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:02.311 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:02.311 -08 000000084 INF: ===================Move X Motor===================
17-02-28 19:41:02.312 -08 000000050 INF: ===================Move Y Motor===================
17-02-28 19:41:02.312 -08 000000084 INF: X Motor: Xmit PR VM\n
17-02-28 19:41:02.312 -08 000000050 INF: Y Motor: Moving to 63.1900 mm @25.000 mm/sec, started at 14.8466 mm
17-02-28 19:41:02.312 -08 000000050 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:41:02.312 -08 000000050 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:02.373 -08 000000084 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:41:02.373 -08 000000084 INF: X Motor: Xmit PR VI\n
17-02-28 19:41:02.373 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:41:02.373 -08 000000050 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:41:02.373 -08 000000050 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:02.437 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:41:02.437 -08 000000050 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:02.437 -08 000000084 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:41:02.437 -08 000000084 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:41:02.437 -08 000000084 INF: X Motor: Moving to 69.1470 mm @15.000 mm/sec, started at 26.0313 mm
17-02-28 19:41:02.437 -08 000000084 INF: X Motor: Xmit MA 4156\n
17-02-28 19:41:02.498 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:02.499 -08 000000050 INF: Y Motor: Recv v 0\r
17-02-28 19:41:02.499 -08 000000084 INF: X Motor: Recv MA 4156\r\n>
17-02-28 19:41:02.499 -08 000000050 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:02.499 -08 000000084 INF: X Motor: WaitUntilStopped 62874
17-02-28 19:41:02.499 -08 000000050 INF: Y Motor: Set target position to 5818999 encoder counts
17-02-28 19:41:02.499 -08 000000050 INF: Y Motor: Xmit s r0xca 5818999\r
17-02-28 19:41:02.560 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:02.561 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:41:02.561 -08 000000050 INF: Y Motor: Start the move command
17-02-28 19:41:02.561 -08 000000050 INF: Y Motor: Xmit t 1\r
17-02-28 19:41:02.625 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:41:02.625 -08 000000050 INF: Y Motor: WaitUntilStopped 61934
17-02-28 19:41:02.625 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:02.749 -08 000000050 INF: Y Motor: Unshifted Position: 1068723
17-02-28 19:41:02.799 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:02.810 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:02.872 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:02.923 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:03.061 -08 000000050 INF: Y Motor: Unshifted Position: 1772179
17-02-28 19:41:03.111 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:03.122 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:03.183 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:03.236 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:03.372 -08 000000050 INF: Y Motor: Unshifted Position: 2559698
17-02-28 19:41:03.422 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:03.433 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:03.497 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:03.548 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:03.684 -08 000000050 INF: Y Motor: Unshifted Position: 3335443
17-02-28 19:41:03.734 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:03.747 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:03.809 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:03.860 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:03.995 -08 000000050 INF: Y Motor: Unshifted Position: 4113046
17-02-28 19:41:04.045 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:04.059 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:04.120 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:04.171 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:04.309 -08 000000050 INF: Y Motor: Unshifted Position: 4898806
17-02-28 19:41:04.359 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:04.370 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:04.432 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:04.483 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:04.619 -08 000000050 INF: Y Motor: Unshifted Position: 5650735
17-02-28 19:41:04.669 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:04.682 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:04.747 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:04.796 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:04.933 -08 000000050 INF: Y Motor: Unshifted Position: 5819006
17-02-28 19:41:04.933 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:41:04.933 -08 000000050 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:04.995 -08 000000050 INF: Y Motor: Recv v 0\r
17-02-28 19:41:04.995 -08 000000050 INF: Y Motor: Moved to 63.1901 after 2370 ms
17-02-28 19:41:04.995 -08 000000050 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:41:04.997 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:05.055 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:05.056 -08 000000050 INF: Y Motor: Recv v 4096\r
17-02-28 19:41:05.118 -08 000000050 INF: Y Motor: Unshifted Position: 5818997
17-02-28 19:41:05.118 -08 000000050 INF: Y Motor: After move to 63.1900, error = 0.0000, min/max error = 0.0000/0.0002, tolerance = 0.0035 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:05.118 -08 000000050 INF: Y Motor: Status After move finished OK:
17-02-28 19:41:05.118 -08 000000050 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:05.183 -08 000000050 INF: Y Motor: Recv v 0\r
17-02-28 19:41:05.183 -08 000000050 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:05.183 -08 000000050 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:41:05.245 -08 000000050 INF: Y Motor: Recv v 402653184\r
17-02-28 19:41:05.245 -08 000000050 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:41:05.245 -08 000000050 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:41:05.245 -08 000000050 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:41:05.305 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:05.307 -08 000000050 INF: Y Motor: Recv v 0\r
17-02-28 19:41:05.307 -08 000000050 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:41:05.307 -08 000000050 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:41:05.307 -08 000000050 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:05.369 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:05.370 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:41:05.370 -08 000000050 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:41:05.370 -08 000000050 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:05.430 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:41:05.430 -08 000000050 INF: ======================================
17-02-28 19:41:05.619 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:05.680 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:05.930 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:05.931 -08 000000084 INF: X Motor: Xmit PR ER\n
17-02-28 19:41:05.993 -08 000000084 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:41:05.993 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:05.993 -08 000000084 INF: X Motor: Moved to 69.1465 after 3494 ms
17-02-28 19:41:06.055 -08 000000084 INF: X Motor: After move to 69.1470, error = -0.0005, min/max error = -0.0010/0.0010, tolerance = 0.0073 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:06.055 -08 000000084 INF: ======================================
17-02-28 19:41:06.056 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:06.057 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:06.058 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:06.059 -08 000000042 INF: MoveAllTiltsToStartPosition
17-02-28 19:41:06.059 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:06.060 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:06.060 -08 000000053 INF: ===================Move Tilt Motor 1===================
17-02-28 19:41:06.060 -08 000000070 INF: ===================Move Tilt Motor 2===================
17-02-28 19:41:06.061 -08 000000055 INF: ===================Move Tilt Motor 3===================
17-02-28 19:41:06.061 -08 000000053 INF: Tilt Motor 1: Moving to 4.7595 mm, started at 5.0853 mm, delta = -0.3258 mm
17-02-28 19:41:06.061 -08 000000053 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:06.061 -08 000000070 INF: Tilt Motor 2: Moving to 5.0803 mm, started at 5.2979 mm, delta = -0.2176 mm
17-02-28 19:41:06.061 -08 000000055 INF: Tilt Motor 3: Moving to 5.0589 mm, started at 5.3243 mm, delta = -0.2654 mm
17-02-28 19:41:06.065 -08 000000055 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:06.066 -08 000000070 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:06.119 -08 000000023 INF: FPGA: Recv T1RD 20021
17-02-28 19:41:06.119 -08 000000023 INF: FPGA: Recv T3RD 20961
17-02-28 19:41:06.119 -08 000000023 INF: FPGA: Recv T2RD 20857
17-02-28 19:41:06.119 -08 000000070 INF: Tilt Motor 2: Encoder: at motor step 3476 + 1/6
17-02-28 19:41:06.119 -08 000000053 INF: Tilt Motor 1: Encoder: at motor step 3336 + 5/6
17-02-28 19:41:06.119 -08 000000053 INF: Tilt Motor 1: Moving to 18738 encoder counts
17-02-28 19:41:06.119 -08 000000053 INF: FPGA: Xmit T1MOVETO 18738\n
17-02-28 19:41:06.119 -08 000000055 INF: Tilt Motor 3: Encoder: at motor step 3493 + 3/6
17-02-28 19:41:06.119 -08 000000055 INF: Tilt Motor 3: Moving to 19917 encoder counts
17-02-28 19:41:06.119 -08 000000070 INF: Tilt Motor 2: Moving to 20001 encoder counts
17-02-28 19:41:06.120 -08 000000055 INF: FPGA: Xmit T3MOVETO 19917\n
17-02-28 19:41:06.122 -08 000000070 INF: FPGA: Xmit T2MOVETO 20001\n
17-02-28 19:41:06.244 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:06.306 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:06.429 -08 000000058 INF: FPGA: Recv T2MOVETO 142
17-02-28 19:41:06.429 -08 000000070 INF: Tilt Motor 2: To move from 5.298 to 5.080 (-0.218 mm) should take 143 steps, but required 142 steps (0.216 mm). Slippage = -0.002 mm (0.01%)
17-02-28 19:41:06.429 -08 000000070 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:06.492 -08 000000100 INF: FPGA: Recv T2RD 20007
17-02-28 19:41:06.492 -08 000000100 INF: FPGA: Recv T3MOVETO 173
17-02-28 19:41:06.493 -08 000000055 INF: Tilt Motor 3: To move from 5.324 to 5.059 (-0.265 mm) should take 174 steps, but required 173 steps (0.264 mm). Slippage = -0.002 mm (0.01%)
17-02-28 19:41:06.493 -08 000000055 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:06.493 -08 000000070 INF: Tilt Motor 2: Encoder: at motor step 3334 + 3/6
17-02-28 19:41:06.494 -08 000000070 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:06.555 -08 000000069 INF: FPGA: Recv T3RD 19923
17-02-28 19:41:06.555 -08 000000069 INF: FPGA: Recv T2RD 20007
17-02-28 19:41:06.555 -08 000000069 INF: FPGA: Recv T1MOVETO 213
17-02-28 19:41:06.555 -08 000000053 INF: Tilt Motor 1: To move from 5.085 to 4.760 (-0.326 mm) should take 214 steps, but required 213 steps (0.325 mm). Slippage = -0.002 mm (0.00%)
17-02-28 19:41:06.555 -08 000000070 INF: Tilt Motor 2: Encoder: at motor step 3334 + 3/6
17-02-28 19:41:06.555 -08 000000053 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:06.555 -08 000000055 INF: Tilt Motor 3: Encoder: at motor step 3320 + 3/6
17-02-28 19:41:06.556 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:06.556 -08 000000055 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:06.558 -08 000000070 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:06.617 -08 000000025 INF: FPGA: Recv T1RD 18744
17-02-28 19:41:06.618 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:06.618 -08 000000025 INF: FPGA: Recv T3RD 19922
17-02-28 19:41:06.618 -08 000000025 INF: FPGA: Recv T2RD 20007
17-02-28 19:41:06.618 -08 000000070 INF: Tilt Motor 2: Encoder: at motor step 3334 + 3/6
17-02-28 19:41:06.618 -08 000000055 INF: Tilt Motor 3: Encoder: at motor step 3320 + 2/6
17-02-28 19:41:06.618 -08 000000055 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:06.618 -08 000000053 INF: Tilt Motor 1: Encoder: at motor step 3124 + 0/6
17-02-28 19:41:06.618 -08 000000070 INF: Tilt Motor 2: After move to 5.0803, error = 0.0015, min/max error = -0.0016/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:06.618 -08 000000070 INF: Tilt Motor 2: Moved to 5.0818 after 557.4323 ms
17-02-28 19:41:06.618 -08 000000070 INF: ======================================
17-02-28 19:41:06.619 -08 000000053 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:06.679 -08 000000054 INF: FPGA: Recv T3RD 19922
17-02-28 19:41:06.679 -08 000000054 INF: FPGA: Recv T1RD 18744
17-02-28 19:41:06.679 -08 000000053 INF: Tilt Motor 1: Encoder: at motor step 3124 + 0/6
17-02-28 19:41:06.679 -08 000000053 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:06.679 -08 000000055 INF: Tilt Motor 3: Encoder: at motor step 3320 + 2/6
17-02-28 19:41:06.679 -08 000000055 INF: Tilt Motor 3: After move to 5.0589, error = 0.0013, min/max error = -0.0017/0.0013, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:06.679 -08 000000055 INF: Tilt Motor 3: Moved to 5.0602 after 618.2319 ms
17-02-28 19:41:06.679 -08 000000055 INF: ======================================
17-02-28 19:41:06.741 -08 000000083 INF: FPGA: Recv T1RD 18744
17-02-28 19:41:06.741 -08 000000053 INF: Tilt Motor 1: Encoder: at motor step 3124 + 0/6
17-02-28 19:41:06.741 -08 000000053 INF: Tilt Motor 1: After move to 4.7595, error = 0.0015, min/max error = -0.0013/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:06.741 -08 000000053 INF: Tilt Motor 1: Moved to 4.7610 after 680.2948 ms
17-02-28 19:41:06.741 -08 000000053 INF: ======================================
17-02-28 19:41:06.742 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:06.743 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:06.744 -08 000000042 INF: Start Tilt Positions <4.760976,5.081778,5.060188>
17-02-28 19:41:06.744 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:06.744 -08 000000042 INF: ***** AutoFocus Begin *****
17-02-28 19:41:06.744 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:06.744 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:06.745 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:06.803 -08 000000056 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:06.803 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:06.804 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:06.804 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.0801 mm
17-02-28 19:41:06.804 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:06.865 -08 000000087 INF: FPGA: Recv ZTRG 
17-02-28 19:41:06.865 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:06.868 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:06.927 -08 000000069 INF: FPGA: Recv ZYT 
17-02-28 19:41:06.927 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:06.927 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:41:06.928 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:06.989 -08 000000044 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:06.989 -08 000000044 INF: FPGA: Recv ZMV 
17-02-28 19:41:06.989 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:06.989 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 61.9705 ms
17-02-28 19:41:06.989 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:07.055 -08 000000020 INF: FPGA: Recv ZDACR 60292
17-02-28 19:41:07.055 -08 000000042 INF: Z Motor: MoveAndTrigger took 251.1301 ms w/comms
17-02-28 19:41:07.055 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:07.055 -08 000000042 INF: Z Motor: MoveAbsStepped took 251.2632 ms
17-02-28 19:41:07.055 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:07.056 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:07.056 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:07.115 -08 000000047 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:07.115 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:07.115 -08 000000042 INF: FPGA: Xmit SWYZ_POS 1\n
17-02-28 19:41:07.177 -08 000000083 INF: FPGA: Recv SWYZ_POS
17-02-28 19:41:07.178 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:07.180 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Programming Camera===================
17-02-28 19:41:07.242 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:07.492 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:07.553 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:07.626 -08 000000042 INF: Camera #0 AttachBuffer (imageDataPtr = 64290230320 imgPtr = 64290230320 , attachBufferNumFrames = 762 , frameSize = 64000,
17-02-28 19:41:07.626 -08 000000042 INF: AutoFocusPRGCamera CameraBaseSensorPath: 0. cameraMode= PartialArea, numFrames = 381, 
SensorModeLineBundleHeight = 512,SubArrayMode = Off,
HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 20,
ExposureTimeSec = 0.005, TriggerSource = Internal,TriggerActive = Pulse,
TriggerMode = Normal, TriggerPolarity = Positive, TriggerConnector = Interface, Binning = 1
17-02-28 19:41:07.627 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:07.627 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Resizing Image===================
17-02-28 19:41:07.627 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:07.627 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:07.628 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:07.628 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:07.628 -08 000000042 INF: Excitation Filter 2: Moving 'Reflective' to index 2 (OD2.5)
17-02-28 19:41:07.628 -08 000000042 INF: Excitation Filter 2: Moving to 90.0000 degrees
17-02-28 19:41:07.628 -08 000000042 INF: Excitation Filter 2: Moving 71 steps
17-02-28 19:41:07.629 -08 000000042 INF: FPGA: Xmit EX2MV 71\n
17-02-28 19:41:07.803 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:07.865 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:07.926 -08 000000069 INF: FPGA: Recv EX2MV
17-02-28 19:41:07.926 -08 000000042 INF: Excitation Filter 2: Moved 71 steps in 297.2443 ms
17-02-28 19:41:07.926 -08 000000042 INF: Excitation Filter 2: Moved to 89.7659 degrees (target was 90.0000) in 297.3363 ms
17-02-28 19:41:07.926 -08 000000042 INF: Excitation Filter 2: Moved 'Reflective' to index 2 (OD2.5) in 297.3986 ms
17-02-28 19:41:07.926 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:07.927 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:07.928 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:07.929 -08 000000027 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:41:07.929 -08 000000060 INF: ===================Move Emission Filter 12 to OutOfPath===================
17-02-28 19:41:07.929 -08 000000060 INF: Emission Filter 12: Moving OutOfPath
17-02-28 19:41:07.929 -08 000000060 INF: FPGA: Xmit EM2RD\n
17-02-28 19:41:07.929 -08 000000027 INF: ======================================
17-02-28 19:41:07.991 -08 000000025 INF: FPGA: Recv EM2RD 1 1 0 0
17-02-28 19:41:07.991 -08 000000060 INF: Emission Filter 12: Emission filter channel 1 slider 2 status: OutOfPathSensor = False, inPathSensor = True
17-02-28 19:41:07.991 -08 000000060 INF: Emission Filter 12: Before move, position = IntoPath, In-path sensor = True, Out-of-path sensor = False
17-02-28 19:41:07.991 -08 000000060 INF: FPGA: Xmit EM2O\n
17-02-28 19:41:08.115 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:08.177 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:08.427 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:08.490 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:08.551 -08 000000069 INF: FPGA: Recv EM2O 
17-02-28 19:41:08.551 -08 000000060 INF: Emission Filter 12: Moved Out of path in 622 ms
17-02-28 19:41:08.551 -08 000000060 INF: FPGA: Xmit EM2RD\n
17-02-28 19:41:08.613 -08 000000045 INF: FPGA: Recv EM2RD 1 0 1 0
17-02-28 19:41:08.613 -08 000000060 INF: Emission Filter 12: Emission filter channel 1 slider 2 status: OutOfPathSensor = True, inPathSensor = False
17-02-28 19:41:08.613 -08 000000060 INF: Emission Filter 12: After move, position = OutOfPath, In-path sensor = False, Out-of-path sensor = True
17-02-28 19:41:08.613 -08 000000060 INF: ======================================
17-02-28 19:41:08.614 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:08.615 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:08.616 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:08.617 -08 000000042 INF: Z Motor: Set Z velocity to 0.100 mm/s / 128847 16.16 format
17-02-28 19:41:08.617 -08 000000042 INF: FPGA: Xmit ZSTEP 128847\n
17-02-28 19:41:08.676 -08 000000088 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:08.676 -08 000000010 INF: ===================MoveSendTrigger Z Motor===================
17-02-28 19:41:08.676 -08 000000010 INF: Z Motor: Entering MoveAbsScaledSendTrigger
17-02-28 19:41:08.676 -08 000000010 INF: Z Motor: Moving to -0.0100 mm, started at -0.2300 mm, triggering at -0.2300 mm
17-02-28 19:41:08.676 -08 000000010 INF: FPGA: Xmit ZTRG 60292\n
17-02-28 19:41:08.738 -08 000000084 INF: FPGA: Recv ZTRG 
17-02-28 19:41:08.738 -08 000000010 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:08.740 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:08.796 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #18===================
17-02-28 19:41:08.800 -08 000000055 INF: FPGA: Recv ZYT 
17-02-28 19:41:08.800 -08 000000010 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:08.800 -08 000000010 INF: FPGA: Xmit ZMV 2621\n
17-02-28 19:41:08.801 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:08.861 -08 000000051 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:08.861 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:08.901 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #36===================
17-02-28 19:41:09.006 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #55===================
17-02-28 19:41:09.051 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:09.111 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #74===================
17-02-28 19:41:09.114 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:09.216 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #92===================
17-02-28 19:41:09.321 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #111===================
17-02-28 19:41:09.364 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:09.424 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:09.426 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #130===================
17-02-28 19:41:09.531 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #148===================
17-02-28 19:41:09.636 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #167===================
17-02-28 19:41:09.674 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:09.737 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:09.741 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #186===================
17-02-28 19:41:09.846 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #204===================
17-02-28 19:41:09.951 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #223===================
17-02-28 19:41:09.987 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:10.050 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:10.056 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #242===================
17-02-28 19:41:10.161 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #260===================
17-02-28 19:41:10.266 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #279===================
17-02-28 19:41:10.300 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:10.361 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:10.371 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #298===================
17-02-28 19:41:10.476 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #316===================
17-02-28 19:41:10.581 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #335===================
17-02-28 19:41:10.611 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:10.672 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:10.686 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #354===================
17-02-28 19:41:10.791 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #372===================
17-02-28 19:41:10.851 -08 000000042 INF: Camera complete - got 381 frames.
17-02-28 19:41:10.851 -08 000000042 INF: Capture duration was 2234 ms, which is 35 ms more than estimated Z move time 2199 ms
17-02-28 19:41:10.851 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:10.851 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Copying Images===================
17-02-28 19:41:10.877 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:10.877 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Waiting for Z...===================
17-02-28 19:41:10.922 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:10.985 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:11.045 -08 000000070 INF: FPGA: Recv ZMV 
17-02-28 19:41:11.045 -08 000000010 INF: Z Motor: MoveAndTrigger 'ZMV' command took 2245.384 ms
17-02-28 19:41:11.045 -08 000000010 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:11.111 -08 000000052 INF: FPGA: Recv ZDACR 2621
17-02-28 19:41:11.111 -08 000000010 INF: Z Motor: After move to -0.0100, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:11.112 -08 000000010 INF: Z Motor: MoveAndTrigger took 2435.27 ms w/comms
17-02-28 19:41:11.112 -08 000000010 INF: Z Motor: Leaving MoveAbsScaledSendTrigger
17-02-28 19:41:11.112 -08 000000010 INF: ======================================
17-02-28 19:41:11.112 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:11.209 -08 000000042 INF: Camera #0 ReleaseBuffer
17-02-28 19:41:11.209 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Saving focus image===================
17-02-28 19:41:11.235 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:11.282 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:11.282 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Brightest Intensity Pixel Sum===================
17-02-28 19:41:11.298 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:11.330 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:11.330 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Curve Fitting===================
17-02-28 19:41:11.330 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Curve Fitting, AutoFocus Algorothm 9: Extracting coords===================
17-02-28 19:41:11.349 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Curve Fitting===================
17-02-28 19:41:11.351 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:11.351 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Moving Z to -0.09461963 mm===================
17-02-28 19:41:11.352 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:11.352 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:11.421 -08 000000076 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:11.421 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Moving Z to -0.09461963 mm===================
17-02-28 19:41:11.421 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:11.421 -08 000000042 INF: Z Motor: Moving to -0.0946 mm, started at -0.0100 mm
17-02-28 19:41:11.421 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:11.484 -08 000000088 INF: FPGA: Recv ZTRG 
17-02-28 19:41:11.484 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:11.546 -08 000000070 INF: FPGA: Recv ZYT 
17-02-28 19:41:11.546 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:11.546 -08 000000042 INF: FPGA: Xmit ZMV 24804\n
17-02-28 19:41:11.548 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:11.609 -08 000000053 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:11.609 -08 000000053 INF: FPGA: Recv ZMV 
17-02-28 19:41:11.610 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:11.610 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 63.7565 ms
17-02-28 19:41:11.610 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:11.611 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:11.670 -08 000000040 INF: FPGA: Recv ZDACR 24804
17-02-28 19:41:11.670 -08 000000042 INF: Z Motor: MoveAndTrigger took 248.4162 ms w/comms
17-02-28 19:41:11.670 -08 000000042 INF: Z Motor: After move to -0.0946, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:11.670 -08 000000042 INF: Z Motor: MoveAbsStepped took 248.5914 ms
17-02-28 19:41:11.670 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Moving Z to -0.09461963 mm===================
17-02-28 19:41:11.671 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:11.671 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:11.671 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:11.735 -08 000000054 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:11.736 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:11.736 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:11.737 -08 000000020 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:41:11.737 -08 000000104 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:41:11.737 -08 000000020 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:41:11.737 -08 000000020 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:41:11.737 -08 000000020 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0665 ms
17-02-28 19:41:11.737 -08 000000104 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:41:11.737 -08 000000104 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:41:11.737 -08 000000104 INF: Excitation Filter 2: Moving -71 steps
17-02-28 19:41:11.737 -08 000000104 INF: FPGA: Xmit EX2MV -71\n
17-02-28 19:41:11.737 -08 000000020 INF: ======================================
17-02-28 19:41:11.861 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:11.921 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:11.982 -08 000000084 INF: FPGA: Recv EX2MV
17-02-28 19:41:11.982 -08 000000104 INF: Excitation Filter 2: Moved -71 steps in 244.8053 ms
17-02-28 19:41:11.982 -08 000000104 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 244.8947 ms
17-02-28 19:41:11.982 -08 000000104 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 244.9608 ms
17-02-28 19:41:11.982 -08 000000104 INF: ======================================
17-02-28 19:41:11.983 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:11.984 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:11.985 -08 000000042 INF: ***** AutoFocus End *****
17-02-28 19:41:11.988 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:12.114 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:12.171 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:12.234 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:12.267 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:12.268 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:12.268 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:12.269 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:12.270 -08 000000058 INF: ===================Move X Motor===================
17-02-28 19:41:12.270 -08 000000092 INF: ===================Move Y Motor===================
17-02-28 19:41:12.270 -08 000000058 INF: X Motor: Xmit PR VM\n
17-02-28 19:41:12.270 -08 000000092 INF: Y Motor: Moving to 63.1900 mm @25.000 mm/sec, started at 63.1900 mm
17-02-28 19:41:12.270 -08 000000092 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:41:12.270 -08 000000092 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:12.297 -08 000000058 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:41:12.297 -08 000000058 INF: X Motor: Xmit PR VI\n
17-02-28 19:41:12.358 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:41:12.358 -08 000000092 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:41:12.358 -08 000000092 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:12.358 -08 000000058 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:41:12.358 -08 000000058 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:41:12.358 -08 000000058 INF: X Motor: Moving to 88.5020 mm @15.000 mm/sec, started at 69.1465 mm
17-02-28 19:41:12.358 -08 000000058 INF: X Motor: Xmit MA 12084\n
17-02-28 19:41:12.420 -08 000000058 INF: X Motor: Recv MA 12084\r\n>
17-02-28 19:41:12.420 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:41:12.420 -08 000000092 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:12.420 -08 000000058 INF: X Motor: WaitUntilStopped 61290
17-02-28 19:41:12.484 -08 000000092 INF: Y Motor: Recv v 0\r
17-02-28 19:41:12.484 -08 000000092 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:12.484 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:12.484 -08 000000092 INF: Y Motor: Set target position to 5818999 encoder counts
17-02-28 19:41:12.484 -08 000000092 INF: Y Motor: Xmit s r0xca 5818999\r
17-02-28 19:41:12.545 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:12.545 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:12.545 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:12.545 -08 000000018 INF: WaitCommand(5000) start
17-02-28 19:41:12.546 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:41:12.546 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7), Delay 5 of 5 seconds left===================
17-02-28 19:41:12.546 -08 000000092 INF: Y Motor: Start the move command
17-02-28 19:41:12.546 -08 000000092 INF: Y Motor: Xmit t 1\r
17-02-28 19:41:12.610 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:41:12.610 -08 000000092 INF: Y Motor: WaitUntilStopped 60000
17-02-28 19:41:12.610 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:12.734 -08 000000092 INF: Y Motor: Unshifted Position: 5818977
17-02-28 19:41:12.734 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:41:12.734 -08 000000092 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:12.796 -08 000000092 INF: Y Motor: Recv v 0\r
17-02-28 19:41:12.796 -08 000000092 INF: Y Motor: Moved to 63.1898 after 186 ms
17-02-28 19:41:12.796 -08 000000092 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:41:12.860 -08 000000092 INF: Y Motor: Recv v 4096\r
17-02-28 19:41:12.920 -08 000000092 INF: Y Motor: Unshifted Position: 5819006
17-02-28 19:41:12.920 -08 000000092 INF: Y Motor: After move to 63.1900, error = 0.0001, min/max error = 0.0000/0.0002, tolerance = 0.0035 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:12.920 -08 000000092 INF: Y Motor: Status After move finished OK:
17-02-28 19:41:12.920 -08 000000092 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:12.984 -08 000000092 INF: Y Motor: Recv v 0\r
17-02-28 19:41:12.984 -08 000000092 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:12.984 -08 000000092 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:41:13.044 -08 000000092 INF: Y Motor: Recv v 402653184\r
17-02-28 19:41:13.044 -08 000000092 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:41:13.044 -08 000000092 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:41:13.044 -08 000000092 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:41:13.106 -08 000000092 INF: Y Motor: Recv v 0\r
17-02-28 19:41:13.106 -08 000000092 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:41:13.106 -08 000000092 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:41:13.106 -08 000000092 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:13.171 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:41:13.171 -08 000000092 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:41:13.171 -08 000000092 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:13.233 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:41:13.233 -08 000000092 INF: ======================================
17-02-28 19:41:13.546 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:13.546 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7), Delay 4 of 5 seconds left===================
17-02-28 19:41:14.294 -08 000000058 INF: X Motor: Xmit PR ER\n
17-02-28 19:41:14.356 -08 000000058 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:41:14.356 -08 000000058 INF: X Motor: Moved to 88.5020 after 1936 ms
17-02-28 19:41:14.420 -08 000000058 INF: X Motor: After move to 88.5020, error = 0.0000, min/max error = -0.0010/0.0010, tolerance = 0.0073 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:14.420 -08 000000058 INF: ======================================
17-02-28 19:41:14.421 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:14.422 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:14.423 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:14.423 -08 000000042 INF: Start Tilt Positions <4.760976,5.081778,5.060188>
17-02-28 19:41:14.424 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:14.424 -08 000000042 INF: ***** AutoFocus Begin *****
17-02-28 19:41:14.424 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:14.424 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:14.424 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:14.478 -08 000000070 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:14.478 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:14.478 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:14.478 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.0946 mm
17-02-28 19:41:14.478 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:14.542 -08 000000060 INF: FPGA: Recv ZTRG 
17-02-28 19:41:14.543 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:14.546 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:14.546 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7), Delay 3 of 5 seconds left===================
17-02-28 19:41:14.602 -08 000000074 INF: FPGA: Recv ZYT 
17-02-28 19:41:14.602 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:14.602 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:41:14.665 -08 000000079 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:14.665 -08 000000079 INF: FPGA: Recv ZMV 
17-02-28 19:41:14.665 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:14.665 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 62.7578 ms
17-02-28 19:41:14.665 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:14.729 -08 000000082 INF: FPGA: Recv ZDACR 60292
17-02-28 19:41:14.729 -08 000000042 INF: Z Motor: MoveAndTrigger took 250.5652 ms w/comms
17-02-28 19:41:14.729 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:14.729 -08 000000042 INF: Z Motor: MoveAbsStepped took 250.7256 ms
17-02-28 19:41:14.729 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:14.730 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:14.730 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:14.793 -08 000000045 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:14.794 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:14.794 -08 000000042 INF: FPGA: Xmit SWYZ_POS 1\n
17-02-28 19:41:14.853 -08 000000077 INF: FPGA: Recv SWYZ_POS
17-02-28 19:41:14.856 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Programming Camera===================
17-02-28 19:41:15.289 -08 000000042 INF: Camera #0 AttachBuffer (imageDataPtr = 64290230320 imgPtr = 64290230320 , attachBufferNumFrames = 762 , frameSize = 64000,
17-02-28 19:41:15.289 -08 000000042 INF: AutoFocusPRGCamera CameraBaseSensorPath: 0. cameraMode= PartialArea, numFrames = 381, 
SensorModeLineBundleHeight = 512,SubArrayMode = Off,
HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 20,
ExposureTimeSec = 0.005, TriggerSource = Internal,TriggerActive = Pulse,
TriggerMode = Normal, TriggerPolarity = Positive, TriggerConnector = Interface, Binning = 1
17-02-28 19:41:15.289 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:15.289 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Resizing Image===================
17-02-28 19:41:15.290 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:15.290 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:15.290 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:15.291 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:15.291 -08 000000042 INF: Excitation Filter 2: Moving 'Reflective' to index 2 (OD2.5)
17-02-28 19:41:15.291 -08 000000042 INF: Excitation Filter 2: Moving to 90.0000 degrees
17-02-28 19:41:15.291 -08 000000042 INF: Excitation Filter 2: Moving 71 steps
17-02-28 19:41:15.291 -08 000000042 INF: FPGA: Xmit EX2MV 71\n
17-02-28 19:41:15.546 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:15.546 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7), Delay 2 of 5 seconds left===================
17-02-28 19:41:15.601 -08 000000083 INF: FPGA: Recv EX2MV
17-02-28 19:41:15.601 -08 000000042 INF: Excitation Filter 2: Moved 71 steps in 309.7726 ms
17-02-28 19:41:15.601 -08 000000042 INF: Excitation Filter 2: Moved to 89.7659 degrees (target was 90.0000) in 309.8704 ms
17-02-28 19:41:15.601 -08 000000042 INF: Excitation Filter 2: Moved 'Reflective' to index 2 (OD2.5) in 309.9381 ms
17-02-28 19:41:15.601 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:15.602 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:15.603 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:15.604 -08 000000070 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:41:15.604 -08 000000097 INF: ===================Move Emission Filter 12 to OutOfPath===================
17-02-28 19:41:15.604 -08 000000097 INF: Emission Filter 12: Remaining OutOfPath
17-02-28 19:41:15.604 -08 000000070 INF: ======================================
17-02-28 19:41:15.604 -08 000000097 INF: ======================================
17-02-28 19:41:15.605 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:15.606 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:15.607 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:15.608 -08 000000042 INF: Z Motor: Set Z velocity to 0.100 mm/s / 128847 16.16 format
17-02-28 19:41:15.608 -08 000000042 INF: FPGA: Xmit ZSTEP 128847\n
17-02-28 19:41:15.663 -08 000000076 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:15.663 -08 000000076 INF: ===================MoveSendTrigger Z Motor===================
17-02-28 19:41:15.663 -08 000000076 INF: Z Motor: Entering MoveAbsScaledSendTrigger
17-02-28 19:41:15.663 -08 000000076 INF: Z Motor: Moving to -0.0100 mm, started at -0.2300 mm, triggering at -0.2300 mm
17-02-28 19:41:15.663 -08 000000076 INF: FPGA: Xmit ZTRG 60292\n
17-02-28 19:41:15.726 -08 000000037 INF: FPGA: Recv ZTRG 
17-02-28 19:41:15.726 -08 000000076 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:15.783 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #19===================
17-02-28 19:41:15.788 -08 000000044 INF: FPGA: Recv ZYT 
17-02-28 19:41:15.788 -08 000000076 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:15.788 -08 000000076 INF: FPGA: Xmit ZMV 2621\n
17-02-28 19:41:15.850 -08 000000099 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:15.850 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:15.888 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #38===================
17-02-28 19:41:15.993 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #57===================
17-02-28 19:41:16.099 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #75===================
17-02-28 19:41:16.204 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #94===================
17-02-28 19:41:16.309 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #113===================
17-02-28 19:41:16.414 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #131===================
17-02-28 19:41:16.519 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #150===================
17-02-28 19:41:16.547 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:16.547 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7), Delay 1 of 5 seconds left===================
17-02-28 19:41:16.624 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #169===================
17-02-28 19:41:16.729 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #187===================
17-02-28 19:41:16.834 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #206===================
17-02-28 19:41:16.939 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #225===================
17-02-28 19:41:17.044 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #243===================
17-02-28 19:41:17.149 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #262===================
17-02-28 19:41:17.254 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #281===================
17-02-28 19:41:17.359 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #299===================
17-02-28 19:41:17.464 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #318===================
17-02-28 19:41:17.547 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:17.547 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:17.547 -08 000000018 INF: WaitCommand(5000) end
17-02-28 19:41:17.547 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:17.569 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #337===================
17-02-28 19:41:17.646 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:41:17.674 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #355===================
17-02-28 19:41:17.724 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`11904 (0x03)\r\n(0xFF)
17-02-28 19:41:17.724 -08 000000018 INF: Current Position of Pump is: 11904
17-02-28 19:41:17.779 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #374===================
17-02-28 19:41:17.824 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:41:17.824 -08 000000042 INF: Camera complete - got 381 frames.
17-02-28 19:41:17.824 -08 000000042 INF: Capture duration was 2215 ms, which is 16 ms more than estimated Z move time 2199 ms
17-02-28 19:41:17.824 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:17.824 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Copying Images===================
17-02-28 19:41:17.850 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:17.850 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Waiting for Z...===================
17-02-28 19:41:17.913 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`11904 (0x03)\r\n(0xFF)
17-02-28 19:41:17.913 -08 000000018 INF: Current Position of Pump is: 11904
17-02-28 19:41:17.913 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7), Dispensing port PortC===================
17-02-28 19:41:18.013 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V8000OD11904R\r
17-02-28 19:41:18.036 -08 000000064 INF: FPGA: Recv ZMV 
17-02-28 19:41:18.036 -08 000000076 INF: Z Motor: MoveAndTrigger 'ZMV' command took 2246.9912 ms
17-02-28 19:41:18.036 -08 000000076 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:18.098 -08 000000054 INF: FPGA: Recv ZDACR 2621
17-02-28 19:41:18.098 -08 000000076 INF: Z Motor: After move to -0.0100, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:18.098 -08 000000076 INF: Z Motor: MoveAndTrigger took 2433.7586 ms w/comms
17-02-28 19:41:18.098 -08 000000076 INF: Z Motor: Leaving MoveAbsScaledSendTrigger
17-02-28 19:41:18.098 -08 000000076 INF: ======================================
17-02-28 19:41:18.099 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:18.099 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:18.196 -08 000000042 INF: Camera #0 ReleaseBuffer
17-02-28 19:41:18.196 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Saving focus image===================
17-02-28 19:41:18.199 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:18.265 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:18.265 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Brightest Intensity Pixel Sum===================
17-02-28 19:41:18.288 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:18.313 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:18.314 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Curve Fitting===================
17-02-28 19:41:18.314 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Curve Fitting, AutoFocus Algorothm 9: Extracting coords===================
17-02-28 19:41:18.333 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Curve Fitting===================
17-02-28 19:41:18.334 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:18.335 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Moving Z to -0.1017909 mm===================
17-02-28 19:41:18.335 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:18.335 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:18.411 -08 000000070 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:18.411 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Moving Z to -0.1017909 mm===================
17-02-28 19:41:18.411 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:18.411 -08 000000042 INF: Z Motor: Moving to -0.1018 mm, started at -0.0100 mm
17-02-28 19:41:18.411 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:18.473 -08 000000088 INF: FPGA: Recv ZTRG 
17-02-28 19:41:18.473 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:18.535 -08 000000023 INF: FPGA: Recv ZYT 
17-02-28 19:41:18.535 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:18.535 -08 000000042 INF: FPGA: Xmit ZMV 26683\n
17-02-28 19:41:18.538 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:18.597 -08 000000047 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:18.597 -08 000000047 INF: FPGA: Recv ZMV 
17-02-28 19:41:18.597 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:18.597 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 61.8903 ms
17-02-28 19:41:18.597 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:18.598 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:18.659 -08 000000070 INF: FPGA: Recv ZDACR 26683
17-02-28 19:41:18.659 -08 000000042 INF: Z Motor: MoveAndTrigger took 247.4354 ms w/comms
17-02-28 19:41:18.659 -08 000000042 INF: Z Motor: After move to -0.1018, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:18.659 -08 000000042 INF: Z Motor: MoveAbsStepped took 247.5939 ms
17-02-28 19:41:18.659 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Moving Z to -0.1017909 mm===================
17-02-28 19:41:18.660 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:18.660 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:18.660 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:18.721 -08 000000084 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:18.721 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:18.722 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:18.723 -08 000000052 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:41:18.723 -08 000000065 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:41:18.723 -08 000000052 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:41:18.723 -08 000000052 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:41:18.723 -08 000000052 INF: Excitation Filter 2: Moving -71 steps
17-02-28 19:41:18.723 -08 000000065 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:41:18.723 -08 000000052 INF: FPGA: Xmit EX2MV -71\n
17-02-28 19:41:18.723 -08 000000065 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:41:18.723 -08 000000065 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0977 ms
17-02-28 19:41:18.723 -08 000000065 INF: ======================================
17-02-28 19:41:18.848 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:18.911 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:18.972 -08 000000044 INF: FPGA: Recv EX2MV
17-02-28 19:41:18.972 -08 000000052 INF: Excitation Filter 2: Moved -71 steps in 249.0198 ms
17-02-28 19:41:18.972 -08 000000052 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 249.113 ms
17-02-28 19:41:18.972 -08 000000052 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 249.1917 ms
17-02-28 19:41:18.972 -08 000000052 INF: ======================================
17-02-28 19:41:18.973 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:18.974 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:18.975 -08 000000042 INF: ***** AutoFocus End *****
17-02-28 19:41:18.978 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:19.105 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:19.161 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:19.221 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:19.257 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:19.258 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:19.258 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:19.259 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:19.260 -08 000000027 INF: ===================Move X Motor===================
17-02-28 19:41:19.260 -08 000000079 INF: ===================Move Y Motor===================
17-02-28 19:41:19.260 -08 000000027 INF: X Motor: Xmit PR VM\n
17-02-28 19:41:19.260 -08 000000079 INF: Y Motor: Moving to 16.3700 mm @25.000 mm/sec, started at 63.1901 mm
17-02-28 19:41:19.260 -08 000000079 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:41:19.260 -08 000000079 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:19.287 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:41:19.287 -08 000000079 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:41:19.287 -08 000000079 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:19.349 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:41:19.349 -08 000000079 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:19.349 -08 000000027 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:41:19.349 -08 000000027 INF: X Motor: Xmit PR VI\n
17-02-28 19:41:19.411 -08 000000079 INF: Y Motor: Recv v 0\r
17-02-28 19:41:19.411 -08 000000079 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:19.411 -08 000000079 INF: Y Motor: Set target position to 1136999 encoder counts
17-02-28 19:41:19.411 -08 000000079 INF: Y Motor: Xmit s r0xca 1136999\r
17-02-28 19:41:19.413 -08 000000027 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:41:19.413 -08 000000027 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:41:19.413 -08 000000027 INF: X Motor: Moving to 80.2070 mm @15.000 mm/sec, started at 88.5020 mm
17-02-28 19:41:19.413 -08 000000027 INF: X Motor: Xmit MA 8686\n
17-02-28 19:41:19.471 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:19.474 -08 000000027 INF: X Motor: Recv MA 8686\r\n>
17-02-28 19:41:19.474 -08 000000027 INF: X Motor: WaitUntilStopped 60553
17-02-28 19:41:19.475 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:41:19.475 -08 000000079 INF: Y Motor: Start the move command
17-02-28 19:41:19.475 -08 000000079 INF: Y Motor: Xmit t 1\r
17-02-28 19:41:19.536 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:19.537 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:41:19.537 -08 000000079 INF: Y Motor: WaitUntilStopped 61873
17-02-28 19:41:19.537 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:19.660 -08 000000079 INF: Y Motor: Unshifted Position: 5740017
17-02-28 19:41:19.710 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:19.786 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:19.835 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:19.845 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:19.845 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Pumping Reagent HCM (7)===================
17-02-28 19:41:19.845 -08 000000018 INF: KloehnPump A (KLOEHNA): Waiting 1000 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-02-28 19:41:19.973 -08 000000079 INF: Y Motor: Unshifted Position: 5031517
17-02-28 19:41:20.023 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:20.147 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:20.283 -08 000000079 INF: Y Motor: Unshifted Position: 4256563
17-02-28 19:41:20.333 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:20.460 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:20.534 -08 000000027 INF: X Motor: Xmit PR ER\n
17-02-28 19:41:20.596 -08 000000027 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:41:20.596 -08 000000079 INF: Y Motor: Unshifted Position: 3473151
17-02-28 19:41:20.596 -08 000000027 INF: X Motor: Moved to 80.2061 after 1122 ms
17-02-28 19:41:20.646 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:20.658 -08 000000027 INF: X Motor: After move to 80.2070, error = -0.0009, min/max error = -0.0010/0.0010, tolerance = 0.0073 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:20.658 -08 000000027 INF: ======================================
17-02-28 19:41:20.770 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:20.910 -08 000000079 INF: Y Motor: Unshifted Position: 2698177
17-02-28 19:41:20.945 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1IR\r
17-02-28 19:41:20.960 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:21.033 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:21.084 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:21.133 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:21.219 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:21.220 -08 000000079 INF: Y Motor: Unshifted Position: 1913130
17-02-28 19:41:21.270 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:21.394 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:21.469 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:21.530 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:21.530 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:21.531 -08 000000079 INF: Y Motor: Unshifted Position: 1213692
17-02-28 19:41:21.531 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Closing shutoff valve===================
17-02-28 19:41:21.581 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:21.708 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:21.844 -08 000000079 INF: Y Motor: Unshifted Position: 1136998
17-02-28 19:41:21.844 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:41:21.844 -08 000000079 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:21.906 -08 000000079 INF: Y Motor: Recv v 0\r
17-02-28 19:41:21.906 -08 000000079 INF: Y Motor: Moved to 16.3700 after 2369 ms
17-02-28 19:41:21.906 -08 000000079 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:41:21.968 -08 000000079 INF: Y Motor: Recv v 4097\r
17-02-28 19:41:22.026 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:22.027 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:22.027 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:22.028 -08 000000018 INF: WaitCommand(10000) start
17-02-28 19:41:22.028 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 10 of 10 seconds left===================
17-02-28 19:41:22.030 -08 000000079 INF: Y Motor: Unshifted Position: 1136999
17-02-28 19:41:22.030 -08 000000079 INF: Y Motor: After move to 16.3700, error = 0.0000, min/max error = 0.0000/0.0002, tolerance = 0.0035 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:22.030 -08 000000079 INF: Y Motor: Status After move finished OK:
17-02-28 19:41:22.030 -08 000000079 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:22.092 -08 000000079 INF: Y Motor: Recv v 0\r
17-02-28 19:41:22.092 -08 000000079 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:22.092 -08 000000079 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:41:22.158 -08 000000079 INF: Y Motor: Recv v 402653184\r
17-02-28 19:41:22.158 -08 000000079 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:41:22.158 -08 000000079 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:41:22.158 -08 000000079 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:41:22.217 -08 000000079 INF: Y Motor: Recv v 0\r
17-02-28 19:41:22.217 -08 000000079 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:41:22.217 -08 000000079 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:41:22.217 -08 000000079 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:22.282 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:41:22.282 -08 000000079 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:41:22.282 -08 000000079 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:22.344 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:41:22.344 -08 000000079 INF: ======================================
17-02-28 19:41:22.345 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:22.346 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:22.347 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:22.347 -08 000000042 INF: Start Tilt Positions <4.760976,5.081778,5.060188>
17-02-28 19:41:22.348 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:22.348 -08 000000042 INF: ***** AutoFocus Begin *****
17-02-28 19:41:22.348 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:22.348 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:22.348 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:22.404 -08 000000051 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:22.404 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:22.404 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:22.404 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.1018 mm
17-02-28 19:41:22.404 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:22.466 -08 000000087 INF: FPGA: Recv ZTRG 
17-02-28 19:41:22.466 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:22.528 -08 000000052 INF: FPGA: Recv ZYT 
17-02-28 19:41:22.528 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:22.528 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:41:22.590 -08 000000053 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:22.590 -08 000000053 INF: FPGA: Recv ZMV 
17-02-28 19:41:22.590 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:22.590 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 61.9994 ms
17-02-28 19:41:22.590 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:22.652 -08 000000056 INF: FPGA: Recv ZDACR 60292
17-02-28 19:41:22.652 -08 000000042 INF: Z Motor: MoveAndTrigger took 247.4345 ms w/comms
17-02-28 19:41:22.652 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:22.652 -08 000000042 INF: Z Motor: MoveAbsStepped took 247.563 ms
17-02-28 19:41:22.652 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:22.653 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:22.653 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:22.714 -08 000000087 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:22.714 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:22.714 -08 000000042 INF: FPGA: Xmit SWYZ_POS 1\n
17-02-28 19:41:22.781 -08 000000060 INF: FPGA: Recv SWYZ_POS
17-02-28 19:41:22.784 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Programming Camera===================
17-02-28 19:41:23.028 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:23.028 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 9 of 10 seconds left===================
17-02-28 19:41:23.218 -08 000000042 INF: Camera #0 AttachBuffer (imageDataPtr = 64290230320 imgPtr = 64290230320 , attachBufferNumFrames = 762 , frameSize = 64000,
17-02-28 19:41:23.218 -08 000000042 INF: AutoFocusPRGCamera CameraBaseSensorPath: 0. cameraMode= PartialArea, numFrames = 381, 
SensorModeLineBundleHeight = 512,SubArrayMode = Off,
HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 20,
ExposureTimeSec = 0.005, TriggerSource = Internal,TriggerActive = Pulse,
TriggerMode = Normal, TriggerPolarity = Positive, TriggerConnector = Interface, Binning = 1
17-02-28 19:41:23.218 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:23.218 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Resizing Image===================
17-02-28 19:41:23.219 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:23.219 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:23.219 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:23.220 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:23.220 -08 000000042 INF: Excitation Filter 2: Moving 'Reflective' to index 2 (OD2.5)
17-02-28 19:41:23.220 -08 000000042 INF: Excitation Filter 2: Moving to 90.0000 degrees
17-02-28 19:41:23.220 -08 000000042 INF: Excitation Filter 2: Moving 71 steps
17-02-28 19:41:23.220 -08 000000042 INF: FPGA: Xmit EX2MV 71\n
17-02-28 19:41:23.526 -08 000000044 INF: FPGA: Recv EX2MV
17-02-28 19:41:23.526 -08 000000042 INF: Excitation Filter 2: Moved 71 steps in 305.5513 ms
17-02-28 19:41:23.526 -08 000000042 INF: Excitation Filter 2: Moved to 89.7659 degrees (target was 90.0000) in 305.649 ms
17-02-28 19:41:23.526 -08 000000042 INF: Excitation Filter 2: Moved 'Reflective' to index 2 (OD2.5) in 305.7178 ms
17-02-28 19:41:23.526 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:23.527 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:23.528 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:23.529 -08 000000027 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:41:23.529 -08 000000037 INF: ===================Move Emission Filter 12 to OutOfPath===================
17-02-28 19:41:23.529 -08 000000027 INF: ======================================
17-02-28 19:41:23.529 -08 000000037 INF: Emission Filter 12: Remaining OutOfPath
17-02-28 19:41:23.530 -08 000000037 INF: ======================================
17-02-28 19:41:23.531 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:23.532 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:23.533 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging===================
17-02-28 19:41:23.533 -08 000000042 INF: Z Motor: Set Z velocity to 0.100 mm/s / 128847 16.16 format
17-02-28 19:41:23.533 -08 000000042 INF: FPGA: Xmit ZSTEP 128847\n
17-02-28 19:41:23.588 -08 000000020 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:23.588 -08 000000020 INF: ===================MoveSendTrigger Z Motor===================
17-02-28 19:41:23.588 -08 000000020 INF: Z Motor: Entering MoveAbsScaledSendTrigger
17-02-28 19:41:23.588 -08 000000020 INF: Z Motor: Moving to -0.0100 mm, started at -0.2300 mm, triggering at -0.2300 mm
17-02-28 19:41:23.588 -08 000000020 INF: FPGA: Xmit ZTRG 60292\n
17-02-28 19:41:23.650 -08 000000053 INF: FPGA: Recv ZTRG 
17-02-28 19:41:23.650 -08 000000020 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:23.709 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #18===================
17-02-28 19:41:23.717 -08 000000058 INF: FPGA: Recv ZYT 
17-02-28 19:41:23.717 -08 000000020 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:23.717 -08 000000020 INF: FPGA: Xmit ZMV 2621\n
17-02-28 19:41:23.775 -08 000000082 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:23.775 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:23.814 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #37===================
17-02-28 19:41:23.919 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #55===================
17-02-28 19:41:24.024 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #74===================
17-02-28 19:41:24.028 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:24.028 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 8 of 10 seconds left===================
17-02-28 19:41:24.129 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #93===================
17-02-28 19:41:24.234 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #111===================
17-02-28 19:41:24.339 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #130===================
17-02-28 19:41:24.444 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #149===================
17-02-28 19:41:24.549 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #167===================
17-02-28 19:41:24.654 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #186===================
17-02-28 19:41:24.759 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #205===================
17-02-28 19:41:24.864 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #223===================
17-02-28 19:41:24.969 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #242===================
17-02-28 19:41:25.028 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:25.028 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 7 of 10 seconds left===================
17-02-28 19:41:25.074 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #261===================
17-02-28 19:41:25.179 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #279===================
17-02-28 19:41:25.284 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #298===================
17-02-28 19:41:25.306 -08 000000023 INF: RunCopyService queue size at 2/28/2017 7:41:25 PM is 2
17-02-28 19:41:25.389 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #317===================
17-02-28 19:41:25.494 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #335===================
17-02-28 19:41:25.599 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #354===================
17-02-28 19:41:25.704 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Imaging, Frame #373===================
17-02-28 19:41:25.749 -08 000000042 INF: Camera complete - got 381 frames.
17-02-28 19:41:25.749 -08 000000042 INF: Capture duration was 2216 ms, which is 17 ms more than estimated Z move time 2199 ms
17-02-28 19:41:25.749 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:25.749 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Copying Images===================
17-02-28 19:41:25.772 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:25.772 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Waiting for Z...===================
17-02-28 19:41:25.959 -08 000000009 INF: FPGA: Recv ZMV 
17-02-28 19:41:25.959 -08 000000020 INF: Z Motor: MoveAndTrigger 'ZMV' command took 2242.2555 ms
17-02-28 19:41:25.959 -08 000000020 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:26.021 -08 000000052 INF: FPGA: Recv ZDACR 2621
17-02-28 19:41:26.021 -08 000000020 INF: Z Motor: After move to -0.0100, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:26.021 -08 000000020 INF: Z Motor: MoveAndTrigger took 2432.7853 ms w/comms
17-02-28 19:41:26.021 -08 000000020 INF: Z Motor: Leaving MoveAbsScaledSendTrigger
17-02-28 19:41:26.021 -08 000000020 INF: ======================================
17-02-28 19:41:26.022 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:26.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:26.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 6 of 10 seconds left===================
17-02-28 19:41:26.118 -08 000000042 INF: Camera #0 ReleaseBuffer
17-02-28 19:41:26.118 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Saving focus image===================
17-02-28 19:41:26.187 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:26.187 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Brightest Intensity Pixel Sum===================
17-02-28 19:41:26.234 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:26.234 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Curve Fitting===================
17-02-28 19:41:26.234 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Curve Fitting, AutoFocus Algorothm 9: Extracting coords===================
17-02-28 19:41:26.253 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Curve Fitting===================
17-02-28 19:41:26.254 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:26.255 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Moving Z to -0.1108634 mm===================
17-02-28 19:41:26.255 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:26.255 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:26.273 -08 000000047 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:26.273 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Moving Z to -0.1108634 mm===================
17-02-28 19:41:26.273 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:26.273 -08 000000042 INF: Z Motor: Moving to -0.1109 mm, started at -0.0100 mm
17-02-28 19:41:26.273 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:26.335 -08 000000067 INF: FPGA: Recv ZTRG 
17-02-28 19:41:26.335 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:26.397 -08 000000063 INF: FPGA: Recv ZYT 
17-02-28 19:41:26.397 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:26.397 -08 000000042 INF: FPGA: Xmit ZMV 29062\n
17-02-28 19:41:26.459 -08 000000009 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:26.459 -08 000000009 INF: FPGA: Recv ZMV 
17-02-28 19:41:26.459 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:26.459 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 62.0248 ms
17-02-28 19:41:26.459 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:26.525 -08 000000056 INF: FPGA: Recv ZDACR 29062
17-02-28 19:41:26.525 -08 000000042 INF: Z Motor: MoveAndTrigger took 251.7977 ms w/comms
17-02-28 19:41:26.525 -08 000000042 INF: Z Motor: After move to -0.1109, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:26.525 -08 000000042 INF: Z Motor: MoveAbsStepped took 251.9463 ms
17-02-28 19:41:26.526 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Moving Z to -0.1108634 mm===================
17-02-28 19:41:26.526 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:26.527 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:26.527 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:26.584 -08 000000097 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:26.584 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:26.585 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:26.586 -08 000000099 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:41:26.586 -08 000000040 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:41:26.586 -08 000000099 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:41:26.586 -08 000000099 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:41:26.586 -08 000000099 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0699 ms
17-02-28 19:41:26.586 -08 000000040 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:41:26.586 -08 000000040 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:41:26.586 -08 000000040 INF: Excitation Filter 2: Moving -71 steps
17-02-28 19:41:26.586 -08 000000040 INF: FPGA: Xmit EX2MV -71\n
17-02-28 19:41:26.586 -08 000000099 INF: ======================================
17-02-28 19:41:26.835 -08 000000076 INF: FPGA: Recv EX2MV
17-02-28 19:41:26.835 -08 000000040 INF: Excitation Filter 2: Moved -71 steps in 248.8632 ms
17-02-28 19:41:26.835 -08 000000040 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 248.9488 ms
17-02-28 19:41:26.835 -08 000000040 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 249.0579 ms
17-02-28 19:41:26.835 -08 000000040 INF: ======================================
17-02-28 19:41:26.836 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:26.837 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:26.838 -08 000000042 INF: ***** AutoFocus End *****
17-02-28 19:41:26.841 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:26.968 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:27.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:27.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 5 of 10 seconds left===================
17-02-28 19:41:27.120 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:27.121 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:27.121 -08 000000042 INF: CalculateAndCorrectTiltImpl: Z <-0.0946196354787194,-0.101790919921925,-0.110863393241907>
17-02-28 19:41:27.121 -08 000000042 INF: CalculateAndCorrectTiltImpl: DeltaTilt <-0.00277785381743897,0.0731802759688418,0.0420502885499188>
17-02-28 19:41:27.121 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:27.122 -08 000000042 INF: CorrectTiltMotors: Movoing tilts to <-0.00277785381743897,0.0731802759688418,0.0420502885499188>
17-02-28 19:41:27.122 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:27.123 -08 000000086 INF: ===================Move Tilt Motor 1===================
17-02-28 19:41:27.123 -08 000000067 INF: ===================Move Tilt Motor 3===================
17-02-28 19:41:27.123 -08 000000086 INF: Tilt Motor 1: Moving to 4.7582 mm, started at 4.7610 mm, delta = -0.0028 mm
17-02-28 19:41:27.123 -08 000000035 INF: ===================Move Tilt Motor 2===================
17-02-28 19:41:27.123 -08 000000086 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:27.123 -08 000000067 INF: Tilt Motor 3: Moving to 5.1022 mm, started at 5.0602 mm, delta = 0.0421 mm
17-02-28 19:41:27.123 -08 000000035 INF: Tilt Motor 2: Moving to 5.1550 mm, started at 5.0818 mm, delta = 0.0732 mm
17-02-28 19:41:27.124 -08 000000035 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:27.126 -08 000000067 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:27.146 -08 000000084 INF: FPGA: Recv T1RD 18744
17-02-28 19:41:27.146 -08 000000084 INF: FPGA: Recv T2RD 20006
17-02-28 19:41:27.146 -08 000000084 INF: FPGA: Recv T3RD 19922
17-02-28 19:41:27.146 -08 000000067 INF: Tilt Motor 3: Encoder: at motor step 3320 + 2/6
17-02-28 19:41:27.146 -08 000000067 INF: Tilt Motor 3: Moving to 20088 encoder counts
17-02-28 19:41:27.146 -08 000000086 INF: Tilt Motor 1: Encoder: at motor step 3124 + 0/6
17-02-28 19:41:27.146 -08 000000067 INF: FPGA: Xmit T3MOVETO 20088\n
17-02-28 19:41:27.146 -08 000000086 INF: Tilt Motor 1: Moving to 18733 encoder counts
17-02-28 19:41:27.146 -08 000000035 INF: Tilt Motor 2: Encoder: at motor step 3334 + 2/6
17-02-28 19:41:27.146 -08 000000035 INF: Tilt Motor 2: Moving to 20295 encoder counts
17-02-28 19:41:27.147 -08 000000035 INF: FPGA: Xmit T2MOVETO 20295\n
17-02-28 19:41:27.149 -08 000000086 INF: FPGA: Xmit T1MOVETO 18733\n
17-02-28 19:41:27.270 -08 000000053 INF: FPGA: Recv T1MOVETO 1
17-02-28 19:41:27.270 -08 000000053 INF: FPGA: Recv T3MOVETO 27
17-02-28 19:41:27.270 -08 000000086 INF: Tilt Motor 1: To move from 4.761 to 4.758 (-0.003 mm) should take 2 steps, but required 1 steps (0.002 mm). Slippage = -0.002 mm (0.55%)
17-02-28 19:41:27.270 -08 000000067 INF: Tilt Motor 3: To move from 5.060 to 5.102 (0.042 mm) should take 28 steps, but required 27 steps (0.041 mm). Slippage = -0.002 mm (-0.04%)
17-02-28 19:41:27.270 -08 000000086 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:27.271 -08 000000067 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:27.335 -08 000000039 INF: FPGA: Recv T1RD 18738
17-02-28 19:41:27.335 -08 000000039 INF: FPGA: Recv T3RD 20085
17-02-28 19:41:27.335 -08 000000039 INF: FPGA: Recv T2MOVETO 48
17-02-28 19:41:27.335 -08 000000035 INF: Tilt Motor 2: To move from 5.082 to 5.155 (0.073 mm) should take 48 steps, but required 48 steps (0.073 mm). Slippage = 0.000 mm (0.00%)
17-02-28 19:41:27.335 -08 000000086 INF: Tilt Motor 1: Encoder: at motor step 3123 + 0/6
17-02-28 19:41:27.335 -08 000000067 INF: Tilt Motor 3: Encoder: at motor step 3347 + 3/6
17-02-28 19:41:27.335 -08 000000035 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:27.336 -08 000000086 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:27.338 -08 000000067 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:27.397 -08 000000054 INF: FPGA: Recv T2RD 20294
17-02-28 19:41:27.397 -08 000000054 INF: FPGA: Recv T1RD 18738
17-02-28 19:41:27.397 -08 000000054 INF: FPGA: Recv T3RD 20085
17-02-28 19:41:27.397 -08 000000086 INF: Tilt Motor 1: Encoder: at motor step 3123 + 0/6
17-02-28 19:41:27.397 -08 000000035 INF: Tilt Motor 2: Encoder: at motor step 3382 + 2/6
17-02-28 19:41:27.397 -08 000000086 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:27.397 -08 000000067 INF: Tilt Motor 3: Encoder: at motor step 3347 + 3/6
17-02-28 19:41:27.398 -08 000000035 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:27.400 -08 000000067 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:27.459 -08 000000050 INF: FPGA: Recv T1RD 18738
17-02-28 19:41:27.459 -08 000000050 INF: FPGA: Recv T2RD 20294
17-02-28 19:41:27.459 -08 000000050 INF: FPGA: Recv T3RD 20085
17-02-28 19:41:27.459 -08 000000067 INF: Tilt Motor 3: Encoder: at motor step 3347 + 3/6
17-02-28 19:41:27.459 -08 000000086 INF: Tilt Motor 1: Encoder: at motor step 3123 + 0/6
17-02-28 19:41:27.459 -08 000000067 INF: Tilt Motor 3: After move to 5.1022, error = -0.0006, min/max error = -0.0017/0.0013, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:27.459 -08 000000086 INF: Tilt Motor 1: After move to 4.7582, error = 0.0013, min/max error = -0.0013/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:27.459 -08 000000067 INF: Tilt Motor 3: Moved to 5.1016 after 335.9999 ms
17-02-28 19:41:27.459 -08 000000086 INF: Tilt Motor 1: Moved to 4.7595 after 336.1281 ms
17-02-28 19:41:27.459 -08 000000035 INF: Tilt Motor 2: Encoder: at motor step 3382 + 2/6
17-02-28 19:41:27.459 -08 000000035 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:27.459 -08 000000067 INF: ======================================
17-02-28 19:41:27.459 -08 000000086 INF: ======================================
17-02-28 19:41:27.521 -08 000000064 INF: FPGA: Recv T2RD 20294
17-02-28 19:41:27.521 -08 000000035 INF: Tilt Motor 2: Encoder: at motor step 3382 + 2/6
17-02-28 19:41:27.521 -08 000000035 INF: Tilt Motor 2: After move to 5.1550, error = -0.0003, min/max error = -0.0016/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:27.521 -08 000000035 INF: Tilt Motor 2: Moved to 5.1547 after 397.799 ms
17-02-28 19:41:27.521 -08 000000035 INF: ======================================
17-02-28 19:41:27.522 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:27.523 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:27.524 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:27.524 -08 000000042 INF: <AUTOTILT - TILT POSITIONS> 
17-02-28 19:41:27.524 -08 000000042 INF: 4.759452, 
17-02-28 19:41:27.525 -08 000000042 INF: 5.154676, 
17-02-28 19:41:27.525 -08 000000042 INF: 5.10159, 
17-02-28 19:41:27.525 -08 000000042 INF: 
17-02-28 19:41:27.525 -08 000000042 INF: <AUTOTILT - Z FOCUS POINTS> 
17-02-28 19:41:27.525 -08 000000042 INF: -0.0946196354787194, 
17-02-28 19:41:27.525 -08 000000042 INF: -0.101790919921925, 
17-02-28 19:41:27.525 -08 000000042 INF: -0.110863393241907, 
17-02-28 19:41:27.525 -08 000000042 INF: 
17-02-28 19:41:27.525 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:27.525 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:27.526 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:27.526 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:27.527 -08 000000040 INF: ===================Move X Motor===================
17-02-28 19:41:27.527 -08 000000076 INF: ===================Move Y Motor===================
17-02-28 19:41:27.527 -08 000000040 INF: X Motor: Xmit PR VM\n
17-02-28 19:41:27.527 -08 000000076 INF: Y Motor: Status After move finished OK:
17-02-28 19:41:27.527 -08 000000076 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:27.585 -08 000000076 INF: Y Motor: Recv v 0\r
17-02-28 19:41:27.585 -08 000000076 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:27.585 -08 000000040 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:41:27.585 -08 000000040 INF: X Motor: Xmit PR VI\n
17-02-28 19:41:27.585 -08 000000076 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:41:27.647 -08 000000076 INF: Y Motor: Recv v 0\r
17-02-28 19:41:27.647 -08 000000076 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x00000000)
17-02-28 19:41:27.647 -08 000000076 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:41:27.647 -08 000000040 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:41:27.647 -08 000000040 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:41:27.647 -08 000000076 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:41:27.647 -08 000000040 INF: ======================================
17-02-28 19:41:27.709 -08 000000076 INF: Y Motor: Recv v 0\r
17-02-28 19:41:27.709 -08 000000076 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:41:27.709 -08 000000076 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:41:27.709 -08 000000076 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:27.775 -08 000000076 INF: Y Motor: Recv ok\r
17-02-28 19:41:27.775 -08 000000076 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:41:27.775 -08 000000076 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:27.834 -08 000000076 INF: Y Motor: Recv ok\r
17-02-28 19:41:27.834 -08 000000076 INF: ======================================
17-02-28 19:41:27.835 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:27.836 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:27.837 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:27.838 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:27.838 -08 000000042 INF: ***** AutoFocus Begin *****
17-02-28 19:41:27.838 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:27.838 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:27.838 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:27.895 -08 000000045 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:27.895 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:27.895 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:27.895 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.1109 mm
17-02-28 19:41:27.895 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:27.957 -08 000000040 INF: FPGA: Recv ZTRG 
17-02-28 19:41:27.957 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:28.021 -08 000000079 INF: FPGA: Recv ZYT 
17-02-28 19:41:28.022 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:28.022 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:41:28.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:28.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 4 of 10 seconds left===================
17-02-28 19:41:28.085 -08 000000086 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:28.085 -08 000000086 INF: FPGA: Recv ZMV 
17-02-28 19:41:28.085 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:28.085 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 63.2839 ms
17-02-28 19:41:28.085 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:28.146 -08 000000053 INF: FPGA: Recv ZDACR 60292
17-02-28 19:41:28.147 -08 000000042 INF: Z Motor: MoveAndTrigger took 251.2647 ms w/comms
17-02-28 19:41:28.147 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:28.147 -08 000000042 INF: Z Motor: MoveAbsStepped took 251.4042 ms
17-02-28 19:41:28.147 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:28.148 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:28.148 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:28.206 -08 000000039 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:28.206 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:28.206 -08 000000042 INF: FPGA: Xmit SWYZ_POS 1\n
17-02-28 19:41:28.271 -08 000000086 INF: FPGA: Recv SWYZ_POS
17-02-28 19:41:28.274 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Programming Camera===================
17-02-28 19:41:28.709 -08 000000042 INF: Camera #0 AttachBuffer (imageDataPtr = 64290230320 imgPtr = 64290230320 , attachBufferNumFrames = 762 , frameSize = 64000,
17-02-28 19:41:28.709 -08 000000042 INF: AutoFocusPRGCamera CameraBaseSensorPath: 0. cameraMode= PartialArea, numFrames = 381, 
SensorModeLineBundleHeight = 512,SubArrayMode = Off,
HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 20,
ExposureTimeSec = 0.005, TriggerSource = Internal,TriggerActive = Pulse,
TriggerMode = Normal, TriggerPolarity = Positive, TriggerConnector = Interface, Binning = 1
17-02-28 19:41:28.709 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:28.709 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Resizing Image===================
17-02-28 19:41:28.709 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:28.710 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:28.710 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:28.711 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:28.711 -08 000000042 INF: Excitation Filter 2: Moving 'Reflective' to index 2 (OD2.5)
17-02-28 19:41:28.711 -08 000000042 INF: Excitation Filter 2: Moving to 90.0000 degrees
17-02-28 19:41:28.711 -08 000000042 INF: Excitation Filter 2: Moving 71 steps
17-02-28 19:41:28.711 -08 000000042 INF: FPGA: Xmit EX2MV 71\n
17-02-28 19:41:29.019 -08 000000039 INF: FPGA: Recv EX2MV
17-02-28 19:41:29.019 -08 000000042 INF: Excitation Filter 2: Moved 71 steps in 307.9836 ms
17-02-28 19:41:29.019 -08 000000042 INF: Excitation Filter 2: Moved to 89.7659 degrees (target was 90.0000) in 308.0718 ms
17-02-28 19:41:29.019 -08 000000042 INF: Excitation Filter 2: Moved 'Reflective' to index 2 (OD2.5) in 308.1562 ms
17-02-28 19:41:29.019 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:29.020 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:29.021 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:29.022 -08 000000077 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:41:29.022 -08 000000050 INF: ===================Move Emission Filter 12 to OutOfPath===================
17-02-28 19:41:29.022 -08 000000077 INF: ======================================
17-02-28 19:41:29.022 -08 000000050 INF: Emission Filter 12: Remaining OutOfPath
17-02-28 19:41:29.022 -08 000000050 INF: ======================================
17-02-28 19:41:29.023 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:29.024 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:29.025 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:29.026 -08 000000042 INF: Z Motor: Set Z velocity to 0.100 mm/s / 128847 16.16 format
17-02-28 19:41:29.026 -08 000000042 INF: FPGA: Xmit ZSTEP 128847\n
17-02-28 19:41:29.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:29.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 3 of 10 seconds left===================
17-02-28 19:41:29.081 -08 000000046 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:29.081 -08 000000046 INF: ===================MoveSendTrigger Z Motor===================
17-02-28 19:41:29.081 -08 000000046 INF: Z Motor: Entering MoveAbsScaledSendTrigger
17-02-28 19:41:29.081 -08 000000046 INF: Z Motor: Moving to -0.0100 mm, started at -0.2300 mm, triggering at -0.2300 mm
17-02-28 19:41:29.081 -08 000000046 INF: FPGA: Xmit ZTRG 60292\n
17-02-28 19:41:29.143 -08 000000010 INF: FPGA: Recv ZTRG 
17-02-28 19:41:29.143 -08 000000046 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:29.201 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #19===================
17-02-28 19:41:29.205 -08 000000077 INF: FPGA: Recv ZYT 
17-02-28 19:41:29.205 -08 000000046 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:29.205 -08 000000046 INF: FPGA: Xmit ZMV 2621\n
17-02-28 19:41:29.267 -08 000000035 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:29.267 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:29.306 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #38===================
17-02-28 19:41:29.411 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #57===================
17-02-28 19:41:29.516 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #75===================
17-02-28 19:41:29.621 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #94===================
17-02-28 19:41:29.726 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #113===================
17-02-28 19:41:29.831 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #131===================
17-02-28 19:41:29.936 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #150===================
17-02-28 19:41:30.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:30.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 2 of 10 seconds left===================
17-02-28 19:41:30.041 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #169===================
17-02-28 19:41:30.146 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #187===================
17-02-28 19:41:30.251 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #206===================
17-02-28 19:41:30.356 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #225===================
17-02-28 19:41:30.461 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #243===================
17-02-28 19:41:30.566 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #262===================
17-02-28 19:41:30.671 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #281===================
17-02-28 19:41:30.776 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #299===================
17-02-28 19:41:30.881 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #318===================
17-02-28 19:41:30.986 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #337===================
17-02-28 19:41:31.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:31.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock, Delay 1 of 10 seconds left===================
17-02-28 19:41:31.091 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #355===================
17-02-28 19:41:31.196 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #374===================
17-02-28 19:41:31.241 -08 000000042 INF: Camera complete - got 381 frames.
17-02-28 19:41:31.241 -08 000000042 INF: Capture duration was 2215 ms, which is 16 ms more than estimated Z move time 2199 ms
17-02-28 19:41:31.241 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:31.241 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Copying Images===================
17-02-28 19:41:31.267 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:31.268 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Waiting for Z...===================
17-02-28 19:41:31.453 -08 000000055 INF: FPGA: Recv ZMV 
17-02-28 19:41:31.453 -08 000000046 INF: Z Motor: MoveAndTrigger 'ZMV' command took 2248.0177 ms
17-02-28 19:41:31.453 -08 000000046 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:31.515 -08 000000025 INF: FPGA: Recv ZDACR 2621
17-02-28 19:41:31.515 -08 000000046 INF: Z Motor: After move to -0.0100, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:31.515 -08 000000046 INF: Z Motor: MoveAndTrigger took 2433.6247 ms w/comms
17-02-28 19:41:31.515 -08 000000046 INF: Z Motor: Leaving MoveAbsScaledSendTrigger
17-02-28 19:41:31.515 -08 000000046 INF: ======================================
17-02-28 19:41:31.516 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:31.613 -08 000000042 INF: Camera #0 ReleaseBuffer
17-02-28 19:41:31.613 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Saving focus image===================
17-02-28 19:41:31.688 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:31.688 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Brightest Intensity Pixel Sum===================
17-02-28 19:41:31.735 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:31.735 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Curve Fitting===================
17-02-28 19:41:31.735 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Curve Fitting, AutoFocus Algorothm 9: Extracting coords===================
17-02-28 19:41:31.754 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Curve Fitting===================
17-02-28 19:41:31.756 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:31.756 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Moving Z to -0.119728 mm===================
17-02-28 19:41:31.756 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:31.756 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:31.825 -08 000000077 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:31.825 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Moving Z to -0.119728 mm===================
17-02-28 19:41:31.825 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:31.825 -08 000000042 INF: Z Motor: Moving to -0.1197 mm, started at -0.0100 mm
17-02-28 19:41:31.826 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:31.890 -08 000000063 INF: FPGA: Recv ZTRG 
17-02-28 19:41:31.890 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:31.951 -08 000000023 INF: FPGA: Recv ZYT 
17-02-28 19:41:31.951 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:31.951 -08 000000042 INF: FPGA: Xmit ZMV 31385\n
17-02-28 19:41:32.013 -08 000000060 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:32.013 -08 000000060 INF: FPGA: Recv ZMV 
17-02-28 19:41:32.013 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:32.013 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 62.3054 ms
17-02-28 19:41:32.013 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:32.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:32.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:32.029 -08 000000018 INF: WaitCommand(10000) end
17-02-28 19:41:32.029 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:32.030 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Deblock===================
17-02-28 19:41:32.030 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle===================
17-02-28 19:41:32.031 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:32.031 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:32.032 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:32.032 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:32.075 -08 000000065 INF: FPGA: Recv ZDACR 31385
17-02-28 19:41:32.075 -08 000000042 INF: Z Motor: MoveAndTrigger took 249.3981 ms w/comms
17-02-28 19:41:32.075 -08 000000042 INF: Z Motor: After move to -0.1197, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:32.075 -08 000000042 INF: Z Motor: MoveAbsStepped took 249.5349 ms
17-02-28 19:41:32.075 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Moving Z to -0.119728 mm===================
17-02-28 19:41:32.076 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:32.076 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Selecting Reagent HB1 (4)===================
17-02-28 19:41:32.076 -08 000000018 INF: Valve A1: Go to position 4
17-02-28 19:41:32.076 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:41:32.076 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:32.076 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:32.076 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:32.137 -08 000000083 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:32.137 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:32.138 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 7\r
17-02-28 19:41:32.138 -08 000000018 INF: Valve A1: 38.188 seconds since last move, > 10.000 seconds required between moves
17-02-28 19:41:32.138 -08 000000018 INF: Valve A1: Taking shortest path 'CC' from 7 to 4
17-02-28 19:41:32.138 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CC4\r
17-02-28 19:41:32.138 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:32.138 -08 000000018 INF: SerialPort A1 (VICIA1): Recv  (discarded)
17-02-28 19:41:32.138 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:41:32.138 -08 000000086 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:41:32.139 -08 000000051 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:41:32.139 -08 000000086 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:41:32.139 -08 000000086 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:41:32.139 -08 000000086 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0635 ms
17-02-28 19:41:32.139 -08 000000051 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:41:32.139 -08 000000051 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:41:32.139 -08 000000051 INF: Excitation Filter 2: Moving -71 steps
17-02-28 19:41:32.139 -08 000000051 INF: FPGA: Xmit EX2MV -71\n
17-02-28 19:41:32.139 -08 000000086 INF: ======================================
17-02-28 19:41:32.388 -08 000000092 INF: FPGA: Recv EX2MV
17-02-28 19:41:32.388 -08 000000051 INF: Excitation Filter 2: Moved -71 steps in 249.0054 ms
17-02-28 19:41:32.388 -08 000000051 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 249.1237 ms
17-02-28 19:41:32.388 -08 000000051 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 249.1977 ms
17-02-28 19:41:32.388 -08 000000051 INF: ======================================
17-02-28 19:41:32.389 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:32.390 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:32.391 -08 000000042 INF: ***** AutoFocus End *****
17-02-28 19:41:32.394 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:32.520 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:32.577 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 4\r
17-02-28 19:41:32.577 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:32.577 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Opening shutoff valve===================
17-02-28 19:41:32.673 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:32.674 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:32.674 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:32.675 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:32.676 -08 000000087 INF: ===================Move X Motor===================
17-02-28 19:41:32.676 -08 000000064 INF: ===================Move Y Motor===================
17-02-28 19:41:32.676 -08 000000087 INF: X Motor: Xmit PR VM\n
17-02-28 19:41:32.676 -08 000000064 INF: Y Motor: Moving to 63.1900 mm @25.000 mm/sec, started at 16.3700 mm
17-02-28 19:41:32.676 -08 000000064 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:41:32.676 -08 000000064 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:32.703 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:41:32.703 -08 000000064 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:41:32.703 -08 000000064 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:32.765 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:41:32.765 -08 000000064 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:32.765 -08 000000087 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:41:32.765 -08 000000087 INF: X Motor: Xmit PR VI\n
17-02-28 19:41:32.827 -08 000000087 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:41:32.827 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:41:32.827 -08 000000087 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:41:32.827 -08 000000064 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:32.827 -08 000000087 INF: X Motor: Moving to 88.5020 mm @15.000 mm/sec, started at 80.2061 mm
17-02-28 19:41:32.827 -08 000000064 INF: Y Motor: Set target position to 5818999 encoder counts
17-02-28 19:41:32.827 -08 000000064 INF: Y Motor: Xmit s r0xca 5818999\r
17-02-28 19:41:32.827 -08 000000087 INF: X Motor: Xmit MA 12084\n
17-02-28 19:41:32.889 -08 000000087 INF: X Motor: Recv MA 12084\r\n>
17-02-28 19:41:32.889 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:41:32.889 -08 000000087 INF: X Motor: WaitUntilStopped 60553
17-02-28 19:41:32.889 -08 000000064 INF: Y Motor: Start the move command
17-02-28 19:41:32.889 -08 000000064 INF: Y Motor: Xmit t 1\r
17-02-28 19:41:32.951 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:41:32.951 -08 000000064 INF: Y Motor: WaitUntilStopped 61873
17-02-28 19:41:32.951 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:33.075 -08 000000064 INF: Y Motor: Unshifted Position: 1218073
17-02-28 19:41:33.125 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:33.254 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:33.324 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:33.324 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:33.327 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:33.387 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:33.388 -08 000000064 INF: Y Motor: Unshifted Position: 1928720
17-02-28 19:41:33.395 -08 000000018 INF: KloehnPump A (KLOEHNA): Pumping from 4, aspirate port PortB, aspiration rate 500, dispense rate 2500, volume 80, calling command "Pumping to Flowcell #1 pump index #0", State=Running, Depth=2, Children=0, Thread="Run", Parent="Buffer Wash", Type=SameThreadBlocking, solution delay 5000
17-02-28 19:41:33.438 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:33.487 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:41:33.562 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:33.573 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`0 (0x03)\r\n(0xFF)
17-02-28 19:41:33.573 -08 000000018 INF: Current Position of Pump is: 0
17-02-28 19:41:33.673 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1OR\r
17-02-28 19:41:33.700 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:33.701 -08 000000064 INF: Y Motor: Unshifted Position: 2708623
17-02-28 19:41:33.751 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:33.800 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:33.875 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:33.886 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:33.949 -08 000000087 INF: X Motor: Xmit PR ER\n
17-02-28 19:41:34.011 -08 000000087 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:41:34.011 -08 000000064 INF: Y Motor: Unshifted Position: 3484524
17-02-28 19:41:34.011 -08 000000087 INF: X Motor: Moved to 88.5020 after 1122 ms
17-02-28 19:41:34.061 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:34.076 -08 000000087 INF: X Motor: After move to 88.5020, error = 0.0000, min/max error = -0.0010/0.0010, tolerance = 0.0073 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:34.076 -08 000000087 INF: ======================================
17-02-28 19:41:34.136 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:34.189 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:34.199 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:34.299 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V10000A0R\r
17-02-28 19:41:34.324 -08 000000064 INF: Y Motor: Unshifted Position: 4266972
17-02-28 19:41:34.374 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:34.385 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:34.485 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:34.498 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:34.574 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:34.574 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4), Aspirating port PortB===================
17-02-28 19:41:34.638 -08 000000064 INF: Y Motor: Unshifted Position: 5050330
17-02-28 19:41:34.674 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V1600IP15360R\r
17-02-28 19:41:34.688 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:34.759 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:34.810 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:34.859 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:34.947 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:34.948 -08 000000064 INF: Y Motor: Unshifted Position: 5744334
17-02-28 19:41:34.998 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:35.126 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:35.199 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:35.259 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:35.260 -08 000000064 INF: Y Motor: Unshifted Position: 5819000
17-02-28 19:41:35.260 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:41:35.260 -08 000000064 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:35.322 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:41:35.322 -08 000000064 INF: Y Motor: Moved to 63.1900 after 2371 ms
17-02-28 19:41:35.322 -08 000000064 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:41:35.386 -08 000000064 INF: Y Motor: Recv v 4096\r
17-02-28 19:41:35.448 -08 000000064 INF: Y Motor: Unshifted Position: 5819000
17-02-28 19:41:35.448 -08 000000064 INF: Y Motor: After move to 63.1900, error = 0.0000, min/max error = 0.0000/0.0002, tolerance = 0.0035 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:35.448 -08 000000064 INF: Y Motor: Status After move finished OK:
17-02-28 19:41:35.448 -08 000000064 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:35.509 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:35.510 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:41:35.510 -08 000000064 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:35.510 -08 000000064 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:41:35.570 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:35.571 -08 000000064 INF: Y Motor: Recv v 402653184\r
17-02-28 19:41:35.571 -08 000000064 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:41:35.571 -08 000000064 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:41:35.571 -08 000000064 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:41:35.636 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:41:35.636 -08 000000064 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:41:35.636 -08 000000064 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:41:35.636 -08 000000064 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:35.697 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:41:35.697 -08 000000064 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:41:35.697 -08 000000064 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:35.759 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:41:35.759 -08 000000064 INF: ======================================
17-02-28 19:41:35.760 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:35.761 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:35.762 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:35.763 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:35.763 -08 000000042 INF: ***** AutoFocus Begin *****
17-02-28 19:41:35.763 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:35.763 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:35.763 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:35.820 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:35.821 -08 000000077 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:35.821 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:35.822 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:35.822 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.1197 mm
17-02-28 19:41:35.822 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:35.884 -08 000000027 INF: FPGA: Recv ZTRG 
17-02-28 19:41:35.884 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:35.884 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:35.945 -08 000000039 INF: FPGA: Recv ZYT 
17-02-28 19:41:35.945 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:35.945 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:41:36.007 -08 000000050 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:36.007 -08 000000050 INF: FPGA: Recv ZMV 
17-02-28 19:41:36.007 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:36.007 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 62.0568 ms
17-02-28 19:41:36.007 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:36.071 -08 000000104 INF: FPGA: Recv ZDACR 60292
17-02-28 19:41:36.071 -08 000000042 INF: Z Motor: MoveAndTrigger took 248.1759 ms w/comms
17-02-28 19:41:36.071 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:36.071 -08 000000042 INF: Z Motor: MoveAbsStepped took 248.3093 ms
17-02-28 19:41:36.071 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:36.072 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:36.072 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:36.132 -08 000000048 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:36.132 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:36.132 -08 000000042 INF: FPGA: Xmit SWYZ_POS 1\n
17-02-28 19:41:36.135 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:36.194 -08 000000076 INF: FPGA: Recv SWYZ_POS
17-02-28 19:41:36.195 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:36.197 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Programming Camera===================
17-02-28 19:41:36.445 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:36.509 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:36.632 -08 000000042 INF: Camera #0 AttachBuffer (imageDataPtr = 64290230320 imgPtr = 64290230320 , attachBufferNumFrames = 762 , frameSize = 64000,
17-02-28 19:41:36.632 -08 000000042 INF: AutoFocusPRGCamera CameraBaseSensorPath: 0. cameraMode= PartialArea, numFrames = 381, 
SensorModeLineBundleHeight = 512,SubArrayMode = Off,
HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 20,
ExposureTimeSec = 0.005, TriggerSource = Internal,TriggerActive = Pulse,
TriggerMode = Normal, TriggerPolarity = Positive, TriggerConnector = Interface, Binning = 1
17-02-28 19:41:36.632 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:36.632 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Resizing Image===================
17-02-28 19:41:36.632 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:36.632 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:36.633 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:36.633 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:36.634 -08 000000042 INF: Excitation Filter 2: Moving 'Reflective' to index 2 (OD2.5)
17-02-28 19:41:36.634 -08 000000042 INF: Excitation Filter 2: Moving to 90.0000 degrees
17-02-28 19:41:36.634 -08 000000042 INF: Excitation Filter 2: Moving 71 steps
17-02-28 19:41:36.634 -08 000000042 INF: FPGA: Xmit EX2MV 71\n
17-02-28 19:41:36.759 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:36.819 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:36.944 -08 000000101 INF: FPGA: Recv EX2MV
17-02-28 19:41:36.944 -08 000000042 INF: Excitation Filter 2: Moved 71 steps in 310.1886 ms
17-02-28 19:41:36.944 -08 000000042 INF: Excitation Filter 2: Moved to 89.7659 degrees (target was 90.0000) in 310.2806 ms
17-02-28 19:41:36.944 -08 000000042 INF: Excitation Filter 2: Moved 'Reflective' to index 2 (OD2.5) in 310.346 ms
17-02-28 19:41:36.945 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:36.946 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:36.947 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:36.948 -08 000000070 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:41:36.948 -08 000000050 INF: ===================Move Emission Filter 12 to OutOfPath===================
17-02-28 19:41:36.948 -08 000000050 INF: Emission Filter 12: Remaining OutOfPath
17-02-28 19:41:36.948 -08 000000070 INF: ======================================
17-02-28 19:41:36.948 -08 000000050 INF: ======================================
17-02-28 19:41:36.949 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:36.950 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:36.951 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:36.952 -08 000000042 INF: Z Motor: Set Z velocity to 0.100 mm/s / 128847 16.16 format
17-02-28 19:41:36.952 -08 000000042 INF: FPGA: Xmit ZSTEP 128847\n
17-02-28 19:41:37.005 -08 000000055 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:37.005 -08 000000055 INF: ===================MoveSendTrigger Z Motor===================
17-02-28 19:41:37.005 -08 000000055 INF: Z Motor: Entering MoveAbsScaledSendTrigger
17-02-28 19:41:37.005 -08 000000055 INF: Z Motor: Moving to -0.0100 mm, started at -0.2300 mm, triggering at -0.2300 mm
17-02-28 19:41:37.005 -08 000000055 INF: FPGA: Xmit ZTRG 60292\n
17-02-28 19:41:37.069 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:37.070 -08 000000023 INF: FPGA: Recv ZTRG 
17-02-28 19:41:37.070 -08 000000055 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:37.125 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #19===================
17-02-28 19:41:37.131 -08 000000084 INF: FPGA: Recv ZYT 
17-02-28 19:41:37.131 -08 000000055 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:37.131 -08 000000055 INF: FPGA: Xmit ZMV 2621\n
17-02-28 19:41:37.132 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:37.193 -08 000000093 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:37.193 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:37.230 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #37===================
17-02-28 19:41:37.335 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #56===================
17-02-28 19:41:37.382 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:37.440 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #75===================
17-02-28 19:41:37.445 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:37.545 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #93===================
17-02-28 19:41:37.650 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #112===================
17-02-28 19:41:37.695 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:37.755 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:37.755 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #131===================
17-02-28 19:41:37.860 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #149===================
17-02-28 19:41:37.965 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #168===================
17-02-28 19:41:38.005 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:38.068 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:38.070 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #186===================
17-02-28 19:41:38.175 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #205===================
17-02-28 19:41:38.280 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #224===================
17-02-28 19:41:38.318 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:38.380 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:38.385 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #242===================
17-02-28 19:41:38.490 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #261===================
17-02-28 19:41:38.595 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #280===================
17-02-28 19:41:38.630 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:38.693 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:38.700 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #298===================
17-02-28 19:41:38.805 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #317===================
17-02-28 19:41:38.910 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #336===================
17-02-28 19:41:38.943 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:39.003 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:39.015 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #354===================
17-02-28 19:41:39.120 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #373===================
17-02-28 19:41:39.165 -08 000000042 INF: Camera complete - got 381 frames.
17-02-28 19:41:39.165 -08 000000042 INF: Capture duration was 2213 ms, which is 14 ms more than estimated Z move time 2199 ms
17-02-28 19:41:39.165 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:39.165 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Copying Images===================
17-02-28 19:41:39.191 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:39.191 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Waiting for Z...===================
17-02-28 19:41:39.253 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:39.316 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:39.377 -08 000000084 INF: FPGA: Recv ZMV 
17-02-28 19:41:39.377 -08 000000055 INF: Z Motor: MoveAndTrigger 'ZMV' command took 2245.9986 ms
17-02-28 19:41:39.377 -08 000000055 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:39.439 -08 000000025 INF: FPGA: Recv ZDACR 2621
17-02-28 19:41:39.439 -08 000000055 INF: Z Motor: After move to -0.0100, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:39.439 -08 000000055 INF: Z Motor: MoveAndTrigger took 2433.6548 ms w/comms
17-02-28 19:41:39.439 -08 000000055 INF: Z Motor: Leaving MoveAbsScaledSendTrigger
17-02-28 19:41:39.439 -08 000000055 INF: ======================================
17-02-28 19:41:39.440 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:39.535 -08 000000042 INF: Camera #0 ReleaseBuffer
17-02-28 19:41:39.535 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Saving focus image===================
17-02-28 19:41:39.566 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:39.606 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:39.606 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Brightest Intensity Pixel Sum===================
17-02-28 19:41:39.629 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:39.653 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:39.654 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Curve Fitting===================
17-02-28 19:41:39.654 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Curve Fitting, AutoFocus Algorothm 9: Extracting coords===================
17-02-28 19:41:39.673 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Curve Fitting===================
17-02-28 19:41:39.674 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:39.675 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Moving Z to -0.1222515 mm===================
17-02-28 19:41:39.675 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:39.675 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:39.753 -08 000000025 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:39.753 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Moving Z to -0.1222515 mm===================
17-02-28 19:41:39.753 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:39.753 -08 000000042 INF: Z Motor: Moving to -0.1223 mm, started at -0.0100 mm
17-02-28 19:41:39.754 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:39.815 -08 000000027 INF: FPGA: Recv ZTRG 
17-02-28 19:41:39.815 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:39.877 -08 000000058 INF: FPGA: Recv ZYT 
17-02-28 19:41:39.877 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:39.877 -08 000000042 INF: FPGA: Xmit ZMV 32047\n
17-02-28 19:41:39.879 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:39.941 -08 000000087 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:39.941 -08 000000087 INF: FPGA: Recv ZMV 
17-02-28 19:41:39.941 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:39.942 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 64.6431 ms
17-02-28 19:41:39.942 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:39.942 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:40.000 -08 000000054 INF: FPGA: Recv ZDACR 32047
17-02-28 19:41:40.000 -08 000000042 INF: Z Motor: MoveAndTrigger took 246.4572 ms w/comms
17-02-28 19:41:40.000 -08 000000042 INF: Z Motor: After move to -0.1223, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:40.000 -08 000000042 INF: Z Motor: MoveAbsStepped took 246.602 ms
17-02-28 19:41:40.000 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Moving Z to -0.1222515 mm===================
17-02-28 19:41:40.001 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:40.001 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:40.001 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:40.064 -08 000000045 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:40.064 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:40.065 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:40.065 -08 000000104 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:41:40.065 -08 000000046 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:41:40.066 -08 000000104 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:41:40.066 -08 000000104 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:41:40.066 -08 000000104 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0722 ms
17-02-28 19:41:40.066 -08 000000046 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:41:40.066 -08 000000046 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:41:40.066 -08 000000046 INF: Excitation Filter 2: Moving -71 steps
17-02-28 19:41:40.066 -08 000000046 INF: FPGA: Xmit EX2MV -71\n
17-02-28 19:41:40.066 -08 000000104 INF: ======================================
17-02-28 19:41:40.192 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:40.252 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:40.315 -08 000000082 INF: FPGA: Recv EX2MV
17-02-28 19:41:40.315 -08 000000046 INF: Excitation Filter 2: Moved -71 steps in 249.6767 ms
17-02-28 19:41:40.315 -08 000000046 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 249.7653 ms
17-02-28 19:41:40.316 -08 000000046 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 249.857 ms
17-02-28 19:41:40.316 -08 000000046 INF: ======================================
17-02-28 19:41:40.317 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:40.318 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:40.318 -08 000000042 INF: ***** AutoFocus End *****
17-02-28 19:41:40.321 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:40.447 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:40.502 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:40.566 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:40.600 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:40.601 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:40.601 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:40.602 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:40.603 -08 000000009 INF: ===================Move X Motor===================
17-02-28 19:41:40.603 -08 000000099 INF: ===================Move Y Motor===================
17-02-28 19:41:40.603 -08 000000009 INF: X Motor: Xmit PR VM\n
17-02-28 19:41:40.603 -08 000000099 INF: Y Motor: Moving to 63.1900 mm @25.000 mm/sec, started at 63.1900 mm
17-02-28 19:41:40.603 -08 000000099 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:41:40.603 -08 000000099 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:40.628 -08 000000099 INF: Y Motor: Recv ok\r
17-02-28 19:41:40.628 -08 000000099 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:41:40.628 -08 000000099 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:40.690 -08 000000009 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:41:40.690 -08 000000009 INF: X Motor: Xmit PR VI\n
17-02-28 19:41:40.690 -08 000000099 INF: Y Motor: Recv ok\r
17-02-28 19:41:40.690 -08 000000099 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:40.752 -08 000000009 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:41:40.752 -08 000000009 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:41:40.752 -08 000000099 INF: Y Motor: Recv v 0\r
17-02-28 19:41:40.752 -08 000000009 INF: X Motor: Moving to 69.1470 mm @15.000 mm/sec, started at 88.5020 mm
17-02-28 19:41:40.752 -08 000000099 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:40.752 -08 000000009 INF: X Motor: Xmit MA 4156\n
17-02-28 19:41:40.752 -08 000000099 INF: Y Motor: Set target position to 5818999 encoder counts
17-02-28 19:41:40.752 -08 000000099 INF: Y Motor: Xmit s r0xca 5818999\r
17-02-28 19:41:40.813 -08 000000099 INF: Y Motor: Recv ok\r
17-02-28 19:41:40.813 -08 000000009 INF: X Motor: Recv MA 4156\r\n>
17-02-28 19:41:40.813 -08 000000099 INF: Y Motor: Start the move command
17-02-28 19:41:40.813 -08 000000099 INF: Y Motor: Xmit t 1\r
17-02-28 19:41:40.813 -08 000000009 INF: X Motor: WaitUntilStopped 61290
17-02-28 19:41:40.816 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:40.878 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:40.879 -08 000000099 INF: Y Motor: Recv ok\r
17-02-28 19:41:40.879 -08 000000099 INF: Y Motor: WaitUntilStopped 60000
17-02-28 19:41:40.879 -08 000000099 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:41:41.003 -08 000000099 INF: Y Motor: Unshifted Position: 5818966
17-02-28 19:41:41.003 -08 000000099 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:41:41.003 -08 000000099 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:41.065 -08 000000099 INF: Y Motor: Recv v 0\r
17-02-28 19:41:41.065 -08 000000099 INF: Y Motor: Moved to 63.1897 after 186 ms
17-02-28 19:41:41.065 -08 000000099 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:41:41.125 -08 000000099 INF: Y Motor: Recv v 4096\r
17-02-28 19:41:41.128 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:41.190 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:41.191 -08 000000099 INF: Y Motor: Unshifted Position: 5818992
17-02-28 19:41:41.191 -08 000000099 INF: Y Motor: After move to 63.1900, error = -0.0001, min/max error = -0.0001/0.0002, tolerance = 0.0035 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:41.191 -08 000000099 INF: Y Motor: Status After move finished OK:
17-02-28 19:41:41.191 -08 000000099 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:41:41.251 -08 000000099 INF: Y Motor: Recv v 0\r
17-02-28 19:41:41.251 -08 000000099 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:41:41.251 -08 000000099 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:41:41.313 -08 000000099 INF: Y Motor: Recv v 402653184\r
17-02-28 19:41:41.313 -08 000000099 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:41:41.313 -08 000000099 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:41:41.313 -08 000000099 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:41:41.377 -08 000000099 INF: Y Motor: Recv v 0\r
17-02-28 19:41:41.377 -08 000000099 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:41:41.377 -08 000000099 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:41:41.377 -08 000000099 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:41:41.440 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:41.441 -08 000000099 INF: Y Motor: Recv ok\r
17-02-28 19:41:41.441 -08 000000099 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:41:41.441 -08 000000099 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:41:41.499 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:41.500 -08 000000099 INF: Y Motor: Recv ok\r
17-02-28 19:41:41.500 -08 000000099 INF: ======================================
17-02-28 19:41:41.749 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:41.812 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:42.062 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:42.123 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:42.373 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:42.438 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:42.687 -08 000000009 INF: X Motor: Xmit PR ER\n
17-02-28 19:41:42.688 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:42.748 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:42.749 -08 000000009 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:41:42.749 -08 000000009 INF: X Motor: Moved to 69.1465 after 1936 ms
17-02-28 19:41:42.810 -08 000000009 INF: X Motor: After move to 69.1470, error = -0.0005, min/max error = -0.0010/0.0010, tolerance = 0.0073 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:42.810 -08 000000009 INF: ======================================
17-02-28 19:41:42.811 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:42.812 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:42.813 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:42.814 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:42.814 -08 000000042 INF: ***** AutoFocus Begin *****
17-02-28 19:41:42.814 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:42.814 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:42.814 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:42.873 -08 000000040 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:42.873 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:42.873 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:42.873 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.1223 mm
17-02-28 19:41:42.873 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:42.937 -08 000000069 INF: FPGA: Recv ZTRG 
17-02-28 19:41:42.937 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:42.995 -08 000000023 INF: FPGA: Recv ZYT 
17-02-28 19:41:42.995 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:42.995 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:41:42.998 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:43.061 -08 000000052 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:43.061 -08 000000052 INF: FPGA: Recv ZMV 
17-02-28 19:41:43.061 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:43.061 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 65.9451 ms
17-02-28 19:41:43.061 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:43.062 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:43.120 -08 000000009 INF: FPGA: Recv ZDACR 60292
17-02-28 19:41:43.120 -08 000000042 INF: Z Motor: MoveAndTrigger took 246.5145 ms w/comms
17-02-28 19:41:43.120 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:43.120 -08 000000042 INF: Z Motor: MoveAbsStepped took 246.6499 ms
17-02-28 19:41:43.120 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:43.121 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:43.121 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:43.185 -08 000000067 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:43.185 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:41:43.185 -08 000000042 INF: FPGA: Xmit SWYZ_POS 1\n
17-02-28 19:41:43.247 -08 000000050 INF: FPGA: Recv SWYZ_POS
17-02-28 19:41:43.250 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Programming Camera===================
17-02-28 19:41:43.312 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:43.372 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:43.622 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:43.684 -08 000000042 INF: Camera #0 AttachBuffer (imageDataPtr = 64290230320 imgPtr = 64290230320 , attachBufferNumFrames = 762 , frameSize = 64000,
17-02-28 19:41:43.684 -08 000000042 INF: AutoFocusPRGCamera CameraBaseSensorPath: 0. cameraMode= PartialArea, numFrames = 381, 
SensorModeLineBundleHeight = 512,SubArrayMode = Off,
HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 20,
ExposureTimeSec = 0.005, TriggerSource = Internal,TriggerActive = Pulse,
TriggerMode = Normal, TriggerPolarity = Positive, TriggerConnector = Interface, Binning = 1
17-02-28 19:41:43.684 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:43.684 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Resizing Image===================
17-02-28 19:41:43.685 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:43.685 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:43.685 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:43.685 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:43.686 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:43.686 -08 000000042 INF: Excitation Filter 2: Moving 'Reflective' to index 2 (OD2.5)
17-02-28 19:41:43.686 -08 000000042 INF: Excitation Filter 2: Moving to 90.0000 degrees
17-02-28 19:41:43.686 -08 000000042 INF: Excitation Filter 2: Moving 71 steps
17-02-28 19:41:43.686 -08 000000042 INF: FPGA: Xmit EX2MV 71\n
17-02-28 19:41:43.931 -08 000000093 INF: FPGA: Recv EX2MV
17-02-28 19:41:43.931 -08 000000042 INF: Excitation Filter 2: Moved 71 steps in 244.9699 ms
17-02-28 19:41:43.931 -08 000000042 INF: Excitation Filter 2: Moved to 89.7659 degrees (target was 90.0000) in 245.0658 ms
17-02-28 19:41:43.931 -08 000000042 INF: Excitation Filter 2: Moved 'Reflective' to index 2 (OD2.5) in 245.1315 ms
17-02-28 19:41:43.931 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:43.932 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:43.933 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:43.934 -08 000000083 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:41:43.934 -08 000000084 INF: ===================Move Emission Filter 12 to OutOfPath===================
17-02-28 19:41:43.934 -08 000000083 INF: ======================================
17-02-28 19:41:43.935 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:43.935 -08 000000084 INF: Emission Filter 12: Remaining OutOfPath
17-02-28 19:41:43.935 -08 000000084 INF: ======================================
17-02-28 19:41:43.937 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:43.938 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:43.939 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging===================
17-02-28 19:41:43.939 -08 000000042 INF: Z Motor: Set Z velocity to 0.100 mm/s / 128847 16.16 format
17-02-28 19:41:43.940 -08 000000042 INF: FPGA: Xmit ZSTEP 128847\n
17-02-28 19:41:43.994 -08 000000050 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:43.994 -08 000000040 INF: ===================MoveSendTrigger Z Motor===================
17-02-28 19:41:43.994 -08 000000040 INF: Z Motor: Entering MoveAbsScaledSendTrigger
17-02-28 19:41:43.994 -08 000000040 INF: Z Motor: Moving to -0.0100 mm, started at -0.2300 mm, triggering at -0.2300 mm
17-02-28 19:41:43.994 -08 000000040 INF: FPGA: Xmit ZTRG 60292\n
17-02-28 19:41:43.995 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:44.056 -08 000000046 INF: FPGA: Recv ZTRG 
17-02-28 19:41:44.056 -08 000000040 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:44.115 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #19===================
17-02-28 19:41:44.118 -08 000000035 INF: FPGA: Recv ZYT 
17-02-28 19:41:44.118 -08 000000040 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:44.118 -08 000000040 INF: FPGA: Xmit ZMV 2621\n
17-02-28 19:41:44.183 -08 000000093 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:44.183 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:44.220 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #38===================
17-02-28 19:41:44.245 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:44.307 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:44.325 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #57===================
17-02-28 19:41:44.430 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #75===================
17-02-28 19:41:44.535 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #94===================
17-02-28 19:41:44.557 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:44.620 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:44.640 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #113===================
17-02-28 19:41:44.745 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #131===================
17-02-28 19:41:44.850 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #150===================
17-02-28 19:41:44.870 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:44.934 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:44.955 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #169===================
17-02-28 19:41:45.060 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #187===================
17-02-28 19:41:45.165 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #206===================
17-02-28 19:41:45.184 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:45.243 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:45.243 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:45.243 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:45.244 -08 000000018 INF: WaitCommand(5000) start
17-02-28 19:41:45.244 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4), Delay 5 of 5 seconds left===================
17-02-28 19:41:45.270 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #225===================
17-02-28 19:41:45.375 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #243===================
17-02-28 19:41:45.480 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #262===================
17-02-28 19:41:45.585 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #281===================
17-02-28 19:41:45.690 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #299===================
17-02-28 19:41:45.795 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #318===================
17-02-28 19:41:45.900 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #337===================
17-02-28 19:41:46.005 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #355===================
17-02-28 19:41:46.111 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Imaging, Frame #374===================
17-02-28 19:41:46.156 -08 000000042 INF: Camera complete - got 381 frames.
17-02-28 19:41:46.156 -08 000000042 INF: Capture duration was 2216 ms, which is 17 ms more than estimated Z move time 2199 ms
17-02-28 19:41:46.156 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:46.156 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Copying Images===================
17-02-28 19:41:46.182 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:46.182 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Waiting for Z...===================
17-02-28 19:41:46.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:46.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4), Delay 4 of 5 seconds left===================
17-02-28 19:41:46.368 -08 000000009 INF: FPGA: Recv ZMV 
17-02-28 19:41:46.368 -08 000000040 INF: Z Motor: MoveAndTrigger 'ZMV' command took 2249.335 ms
17-02-28 19:41:46.368 -08 000000040 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:46.432 -08 000000060 INF: FPGA: Recv ZDACR 2621
17-02-28 19:41:46.433 -08 000000040 INF: Z Motor: After move to -0.0100, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:46.433 -08 000000040 INF: Z Motor: MoveAndTrigger took 2437.3918 ms w/comms
17-02-28 19:41:46.433 -08 000000040 INF: Z Motor: Leaving MoveAbsScaledSendTrigger
17-02-28 19:41:46.433 -08 000000040 INF: ======================================
17-02-28 19:41:46.433 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:46.529 -08 000000042 INF: Camera #0 ReleaseBuffer
17-02-28 19:41:46.529 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Saving focus image===================
17-02-28 19:41:46.597 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:46.597 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Brightest Intensity Pixel Sum===================
17-02-28 19:41:46.645 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:46.645 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Curve Fitting===================
17-02-28 19:41:46.645 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Curve Fitting, AutoFocus Algorothm 9: Extracting coords===================
17-02-28 19:41:46.664 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Curve Fitting===================
17-02-28 19:41:46.665 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:46.666 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Moving Z to -0.1233403 mm===================
17-02-28 19:41:46.666 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:41:46.666 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:41:46.678 -08 000000058 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:46.678 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Moving Z to -0.1233403 mm===================
17-02-28 19:41:46.679 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:41:46.679 -08 000000042 INF: Z Motor: Moving to -0.1233 mm, started at -0.0100 mm
17-02-28 19:41:46.679 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:41:46.740 -08 000000025 INF: FPGA: Recv ZTRG 
17-02-28 19:41:46.740 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:41:46.806 -08 000000104 INF: FPGA: Recv ZYT 
17-02-28 19:41:46.806 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:41:46.806 -08 000000042 INF: FPGA: Xmit ZMV 32332\n
17-02-28 19:41:46.865 -08 000000067 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:41:46.865 -08 000000067 INF: FPGA: Recv ZMV 
17-02-28 19:41:46.865 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:41:46.865 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 58.9619 ms
17-02-28 19:41:46.865 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:41:46.927 -08 000000058 INF: FPGA: Recv ZDACR 32332
17-02-28 19:41:46.927 -08 000000042 INF: Z Motor: MoveAndTrigger took 248.1592 ms w/comms
17-02-28 19:41:46.927 -08 000000042 INF: Z Motor: After move to -0.1233, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:46.927 -08 000000042 INF: Z Motor: MoveAbsStepped took 248.2926 ms
17-02-28 19:41:46.927 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking, Moving Z to -0.1233403 mm===================
17-02-28 19:41:46.928 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:46.928 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:41:46.928 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:41:46.992 -08 000000044 INF: FPGA: Recv ZSTEP 
17-02-28 19:41:46.992 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:46.993 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:46.994 -08 000000094 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:41:46.994 -08 000000086 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:41:46.994 -08 000000094 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:41:46.994 -08 000000094 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:41:46.994 -08 000000094 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0628 ms
17-02-28 19:41:46.994 -08 000000086 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:41:46.994 -08 000000086 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:41:46.994 -08 000000086 INF: Excitation Filter 2: Moving -71 steps
17-02-28 19:41:46.994 -08 000000086 INF: FPGA: Xmit EX2MV -71\n
17-02-28 19:41:46.994 -08 000000094 INF: ======================================
17-02-28 19:41:47.241 -08 000000069 INF: FPGA: Recv EX2MV
17-02-28 19:41:47.241 -08 000000086 INF: Excitation Filter 2: Moved -71 steps in 246.8346 ms
17-02-28 19:41:47.241 -08 000000086 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 246.9259 ms
17-02-28 19:41:47.241 -08 000000086 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 246.9985 ms
17-02-28 19:41:47.241 -08 000000086 INF: ======================================
17-02-28 19:41:47.242 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:47.243 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:47.244 -08 000000042 INF: ***** AutoFocus End *****
17-02-28 19:41:47.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:47.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4), Delay 3 of 5 seconds left===================
17-02-28 19:41:47.247 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:47.373 -08 000000042 INF: Change Camera 's mode to TDI
17-02-28 19:41:47.526 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt, Checking===================
17-02-28 19:41:47.526 -08 000000042 INF: CheckTiltAccuracy: Z1 = -0.123, Z2 = -0.122, Z3 = -0.120 ; Ideal Z = -0.122
17-02-28 19:41:47.527 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Tilt===================
17-02-28 19:41:47.527 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:41:47.527 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:41:47.528 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:41:47.528 -08 000000094 INF: ===================Move Tilt Motor 1===================
17-02-28 19:41:47.529 -08 000000058 INF: ===================Move Tilt Motor 2===================
17-02-28 19:41:47.529 -08 000000052 INF: ===================Move Tilt Motor 3===================
17-02-28 19:41:47.529 -08 000000094 INF: Tilt Motor 1: Moving to 4.9995 mm, started at 4.7595 mm, delta = 0.2400 mm
17-02-28 19:41:47.529 -08 000000094 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:47.529 -08 000000052 INF: Tilt Motor 3: Moving to 5.3416 mm, started at 5.1016 mm, delta = 0.2400 mm
17-02-28 19:41:47.529 -08 000000058 INF: Tilt Motor 2: Moving to 5.3947 mm, started at 5.1547 mm, delta = 0.2400 mm
17-02-28 19:41:47.530 -08 000000052 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:47.532 -08 000000058 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:47.551 -08 000000064 INF: FPGA: Recv T1RD 18738
17-02-28 19:41:47.551 -08 000000064 INF: FPGA: Recv T3RD 20083
17-02-28 19:41:47.551 -08 000000064 INF: FPGA: Recv T2RD 20294
17-02-28 19:41:47.551 -08 000000058 INF: Tilt Motor 2: Encoder: at motor step 3382 + 2/6
17-02-28 19:41:47.551 -08 000000058 INF: Tilt Motor 2: Moving to 21239 encoder counts
17-02-28 19:41:47.551 -08 000000052 INF: Tilt Motor 3: Encoder: at motor step 3347 + 1/6
17-02-28 19:41:47.551 -08 000000058 INF: FPGA: Xmit T2MOVETO 21239\n
17-02-28 19:41:47.551 -08 000000052 INF: Tilt Motor 3: Moving to 21030 encoder counts
17-02-28 19:41:47.551 -08 000000094 INF: Tilt Motor 1: Encoder: at motor step 3123 + 0/6
17-02-28 19:41:47.551 -08 000000094 INF: Tilt Motor 1: Moving to 19683 encoder counts
17-02-28 19:41:47.552 -08 000000094 INF: FPGA: Xmit T1MOVETO 19683\n
17-02-28 19:41:47.554 -08 000000052 INF: FPGA: Xmit T3MOVETO 21030\n
17-02-28 19:41:47.864 -08 000000039 INF: FPGA: Recv T2MOVETO 157
17-02-28 19:41:47.864 -08 000000039 INF: FPGA: Recv T1MOVETO 157
17-02-28 19:41:47.864 -08 000000094 INF: Tilt Motor 1: To move from 4.759 to 4.999 (0.240 mm) should take 158 steps, but required 157 steps (0.239 mm). Slippage = -0.002 mm (-0.01%)
17-02-28 19:41:47.864 -08 000000058 INF: Tilt Motor 2: To move from 5.155 to 5.395 (0.240 mm) should take 158 steps, but required 157 steps (0.239 mm). Slippage = -0.002 mm (-0.01%)
17-02-28 19:41:47.864 -08 000000094 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:47.865 -08 000000058 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:47.928 -08 000000044 INF: FPGA: Recv T3MOVETO 157
17-02-28 19:41:47.928 -08 000000044 INF: FPGA: Recv T1RD 19681
17-02-28 19:41:47.928 -08 000000044 INF: FPGA: Recv T2RD 21236
17-02-28 19:41:47.929 -08 000000058 INF: Tilt Motor 2: Encoder: at motor step 3539 + 2/6
17-02-28 19:41:47.929 -08 000000052 INF: Tilt Motor 3: To move from 5.101 to 5.342 (0.240 mm) should take 158 steps, but required 157 steps (0.239 mm). Slippage = -0.002 mm (-0.01%)
17-02-28 19:41:47.929 -08 000000094 INF: Tilt Motor 1: Encoder: at motor step 3280 + 1/6
17-02-28 19:41:47.929 -08 000000058 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:47.930 -08 000000052 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:47.931 -08 000000094 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:47.988 -08 000000065 INF: FPGA: Recv T2RD 21236
17-02-28 19:41:47.988 -08 000000065 INF: FPGA: Recv T3RD 21025
17-02-28 19:41:47.988 -08 000000065 INF: FPGA: Recv T1RD 19681
17-02-28 19:41:47.988 -08 000000094 INF: Tilt Motor 1: Encoder: at motor step 3280 + 1/6
17-02-28 19:41:47.988 -08 000000058 INF: Tilt Motor 2: Encoder: at motor step 3539 + 2/6
17-02-28 19:41:47.988 -08 000000094 INF: FPGA: Xmit T1RD\n
17-02-28 19:41:47.988 -08 000000052 INF: Tilt Motor 3: Encoder: at motor step 3504 + 1/6
17-02-28 19:41:47.989 -08 000000058 INF: FPGA: Xmit T2RD\n
17-02-28 19:41:47.991 -08 000000052 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:48.052 -08 000000079 INF: FPGA: Recv T1RD 19681
17-02-28 19:41:48.052 -08 000000079 INF: FPGA: Recv T2RD 21236
17-02-28 19:41:48.052 -08 000000079 INF: FPGA: Recv T3RD 21025
17-02-28 19:41:48.053 -08 000000058 INF: Tilt Motor 2: Encoder: at motor step 3539 + 2/6
17-02-28 19:41:48.053 -08 000000058 INF: Tilt Motor 2: After move to 5.3947, error = -0.0007, min/max error = -0.0016/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:48.053 -08 000000052 INF: Tilt Motor 3: Encoder: at motor step 3504 + 1/6
17-02-28 19:41:48.053 -08 000000058 INF: Tilt Motor 2: Moved to 5.3939 after 523.772 ms
17-02-28 19:41:48.053 -08 000000052 INF: FPGA: Xmit T3RD\n
17-02-28 19:41:48.053 -08 000000094 INF: Tilt Motor 1: Encoder: at motor step 3280 + 1/6
17-02-28 19:41:48.053 -08 000000094 INF: Tilt Motor 1: After move to 4.9995, error = -0.0005, min/max error = -0.0013/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:48.053 -08 000000058 INF: ======================================
17-02-28 19:41:48.053 -08 000000094 INF: Tilt Motor 1: Moved to 4.9990 after 524.4376 ms
17-02-28 19:41:48.053 -08 000000094 INF: ======================================
17-02-28 19:41:48.115 -08 000000056 INF: FPGA: Recv T3RD 21025
17-02-28 19:41:48.115 -08 000000052 INF: Tilt Motor 3: Encoder: at motor step 3504 + 1/6
17-02-28 19:41:48.115 -08 000000052 INF: Tilt Motor 3: After move to 5.3416, error = -0.0012, min/max error = -0.0017/0.0013, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:41:48.115 -08 000000052 INF: Tilt Motor 3: Moved to 5.3404 after 586.2177 ms
17-02-28 19:41:48.115 -08 000000052 INF: ======================================
17-02-28 19:41:48.116 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:41:48.117 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:41:48.118 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:41:48.118 -08 000000067 INF: ===================Restore Laser1 Power===================
17-02-28 19:41:48.119 -08 000000035 INF: ===================Restore Laser2 Power===================
17-02-28 19:41:48.119 -08 000000067 INF: ===================Restore Laser1 Power, SetPower Laser 1 - Smd6000 Green 532 APC===================
17-02-28 19:41:48.119 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER=542\r
17-02-28 19:41:48.120 -08 000000035 INF: ===================Restore Laser2 Power, SetPower Laser 2 - Smd6000 Red 660 APC===================
17-02-28 19:41:48.121 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER=650\r
17-02-28 19:41:48.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:48.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4), Delay 2 of 5 seconds left===================
17-02-28 19:41:48.680 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:48.681 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:48.739 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0969mW\r\n
17-02-28 19:41:48.739 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0158mW\r\n
17-02-28 19:41:48.739 -08 000000067 INF: ===================Restore Laser1 Power===================
17-02-28 19:41:48.739 -08 000000035 INF: ===================Restore Laser2 Power===================
17-02-28 19:41:48.740 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:48.740 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:48.741 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling, GetPower Laser 1 - Smd6000 Green 532 APC===================
17-02-28 19:41:48.741 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling, GetPower Laser 2 - Smd6000 Red 660 APC===================
17-02-28 19:41:48.741 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:48.741 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:48.801 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0969mW\r\n
17-02-28 19:41:48.801 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0160mW\r\n
17-02-28 19:41:48.801 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:48.801 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:48.802 -08 000000067 INF: Laser 1 power 969, target 542
17-02-28 19:41:48.802 -08 000000035 INF: Laser 2 power 160, target 650
17-02-28 19:41:48.802 -08 000000067 INF: ===================Laser 1 power 969, target 542===================
17-02-28 19:41:48.802 -08 000000035 INF: ===================Laser 2 power 160, target 650===================
17-02-28 19:41:49.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:49.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4), Delay 1 of 5 seconds left===================
17-02-28 19:41:49.802 -08 000000035 INF: ===================Laser 2 power 160, target 650===================
17-02-28 19:41:49.802 -08 000000067 INF: ===================Laser 1 power 969, target 542===================
17-02-28 19:41:49.802 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:49.802 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:49.864 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0186mW\r\n
17-02-28 19:41:49.864 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0881mW\r\n
17-02-28 19:41:49.864 -08 000000035 INF: ===================Laser 2 power 160, target 650===================
17-02-28 19:41:49.864 -08 000000067 INF: ===================Laser 1 power 969, target 542===================
17-02-28 19:41:49.865 -08 000000035 INF: Laser 2 power 186, target 650
17-02-28 19:41:49.865 -08 000000067 INF: Laser 1 power 881, target 542
17-02-28 19:41:49.865 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:49.865 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:49.865 -08 000000035 INF: ===================Laser 2 power 186, target 650===================
17-02-28 19:41:49.865 -08 000000067 INF: ===================Laser 1 power 881, target 542===================
17-02-28 19:41:50.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:50.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:50.245 -08 000000018 INF: WaitCommand(5000) end
17-02-28 19:41:50.245 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:50.344 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:41:50.424 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`15360 (0x03)\r\n(0xFF)
17-02-28 19:41:50.424 -08 000000018 INF: Current Position of Pump is: 15360
17-02-28 19:41:50.524 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:41:50.610 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`15360 (0x03)\r\n(0xFF)
17-02-28 19:41:50.610 -08 000000018 INF: Current Position of Pump is: 15360
17-02-28 19:41:50.610 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4), Dispensing port PortC===================
17-02-28 19:41:50.710 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V8000OD15360R\r
17-02-28 19:41:50.799 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:50.865 -08 000000067 INF: ===================Laser 1 power 881, target 542===================
17-02-28 19:41:50.865 -08 000000035 INF: ===================Laser 2 power 186, target 650===================
17-02-28 19:41:50.865 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:50.865 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:50.899 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:50.924 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0210mW\r\n
17-02-28 19:41:50.924 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0798mW\r\n
17-02-28 19:41:50.924 -08 000000035 INF: ===================Laser 2 power 186, target 650===================
17-02-28 19:41:50.924 -08 000000067 INF: ===================Laser 1 power 881, target 542===================
17-02-28 19:41:50.925 -08 000000035 INF: Laser 2 power 210, target 650
17-02-28 19:41:50.925 -08 000000067 INF: Laser 1 power 798, target 542
17-02-28 19:41:50.925 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:50.925 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:50.925 -08 000000035 INF: ===================Laser 2 power 210, target 650===================
17-02-28 19:41:50.925 -08 000000067 INF: ===================Laser 1 power 798, target 542===================
17-02-28 19:41:50.985 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:51.235 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:51.300 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:51.550 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:51.608 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:51.858 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:51.921 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:51.925 -08 000000067 INF: ===================Laser 1 power 798, target 542===================
17-02-28 19:41:51.925 -08 000000035 INF: ===================Laser 2 power 210, target 650===================
17-02-28 19:41:51.925 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:51.925 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:51.984 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0234mW\r\n
17-02-28 19:41:51.984 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0737mW\r\n
17-02-28 19:41:51.984 -08 000000035 INF: ===================Laser 2 power 210, target 650===================
17-02-28 19:41:51.984 -08 000000067 INF: ===================Laser 1 power 798, target 542===================
17-02-28 19:41:51.985 -08 000000035 INF: Laser 2 power 234, target 650
17-02-28 19:41:51.985 -08 000000067 INF: Laser 1 power 737, target 542
17-02-28 19:41:51.985 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:51.985 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:51.985 -08 000000035 INF: ===================Laser 2 power 234, target 650===================
17-02-28 19:41:51.985 -08 000000067 INF: ===================Laser 1 power 737, target 542===================
17-02-28 19:41:52.171 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:52.232 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:52.482 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:52.545 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:52.795 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:52.858 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:52.985 -08 000000035 INF: ===================Laser 2 power 234, target 650===================
17-02-28 19:41:52.985 -08 000000067 INF: ===================Laser 1 power 737, target 542===================
17-02-28 19:41:52.985 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:52.985 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:53.045 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0681mW\r\n
17-02-28 19:41:53.045 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0256mW\r\n
17-02-28 19:41:53.045 -08 000000067 INF: ===================Laser 1 power 737, target 542===================
17-02-28 19:41:53.045 -08 000000035 INF: ===================Laser 2 power 234, target 650===================
17-02-28 19:41:53.046 -08 000000067 INF: Laser 1 power 681, target 542
17-02-28 19:41:53.046 -08 000000035 INF: Laser 2 power 256, target 650
17-02-28 19:41:53.046 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:53.046 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:53.046 -08 000000067 INF: ===================Laser 1 power 681, target 542===================
17-02-28 19:41:53.046 -08 000000035 INF: ===================Laser 2 power 256, target 650===================
17-02-28 19:41:53.108 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:53.168 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:53.168 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB1 (4)===================
17-02-28 19:41:53.168 -08 000000018 INF: KloehnPump A (KLOEHNA): Waiting 1000 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-02-28 19:41:54.046 -08 000000035 INF: ===================Laser 2 power 256, target 650===================
17-02-28 19:41:54.046 -08 000000067 INF: ===================Laser 1 power 681, target 542===================
17-02-28 19:41:54.046 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:54.046 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:54.105 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0277mW\r\n
17-02-28 19:41:54.105 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0627mW\r\n
17-02-28 19:41:54.105 -08 000000035 INF: ===================Laser 2 power 256, target 650===================
17-02-28 19:41:54.105 -08 000000067 INF: ===================Laser 1 power 681, target 542===================
17-02-28 19:41:54.106 -08 000000035 INF: Laser 2 power 277, target 650
17-02-28 19:41:54.106 -08 000000067 INF: Laser 1 power 627, target 542
17-02-28 19:41:54.106 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:54.106 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:54.106 -08 000000035 INF: ===================Laser 2 power 277, target 650===================
17-02-28 19:41:54.106 -08 000000067 INF: ===================Laser 1 power 627, target 542===================
17-02-28 19:41:54.268 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1IR\r
17-02-28 19:41:54.356 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:54.456 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:54.480 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:54.730 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:54.790 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:54.790 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:54.790 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Closing shutoff valve===================
17-02-28 19:41:55.106 -08 000000035 INF: ===================Laser 2 power 277, target 650===================
17-02-28 19:41:55.106 -08 000000067 INF: ===================Laser 1 power 627, target 542===================
17-02-28 19:41:55.106 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:55.106 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:55.166 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0292mW\r\n
17-02-28 19:41:55.166 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0569mW\r\n
17-02-28 19:41:55.166 -08 000000035 INF: ===================Laser 2 power 277, target 650===================
17-02-28 19:41:55.166 -08 000000067 INF: ===================Laser 1 power 627, target 542===================
17-02-28 19:41:55.167 -08 000000035 INF: Laser 2 power 292, target 650
17-02-28 19:41:55.167 -08 000000067 INF: Laser 1 power 569, target 542
17-02-28 19:41:55.167 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:55.167 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:55.167 -08 000000035 INF: ===================Laser 2 power 292, target 650===================
17-02-28 19:41:55.167 -08 000000067 INF: ===================Laser 1 power 569, target 542===================
17-02-28 19:41:55.323 -08 000000020 INF: RunCopyService queue size at 2/28/2017 7:41:55 PM is 2
17-02-28 19:41:55.413 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:55.413 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:55.414 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:55.417 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:55.479 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:55.479 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Selecting Reagent HB2 (6)===================
17-02-28 19:41:55.479 -08 000000018 INF: Valve A1: Go to position 6
17-02-28 19:41:55.479 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:41:55.541 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 4\r
17-02-28 19:41:55.541 -08 000000018 INF: Valve A1: 23.401 seconds since last move, > 10.000 seconds required between moves
17-02-28 19:41:55.541 -08 000000018 INF: Valve A1: Taking shortest path 'CW' from 4 to 6
17-02-28 19:41:55.541 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CW6\r
17-02-28 19:41:55.541 -08 000000018 INF: SerialPort A1 (VICIA1): Recv  (discarded)
17-02-28 19:41:55.541 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:41:55.913 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 6\r
17-02-28 19:41:55.913 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:55.913 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Opening shutoff valve===================
17-02-28 19:41:56.168 -08 000000067 INF: ===================Laser 1 power 569, target 542===================
17-02-28 19:41:56.168 -08 000000035 INF: ===================Laser 2 power 292, target 650===================
17-02-28 19:41:56.168 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:56.168 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:56.229 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0523mW\r\n
17-02-28 19:41:56.229 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0308mW\r\n
17-02-28 19:41:56.229 -08 000000067 INF: ===================Laser 1 power 569, target 542===================
17-02-28 19:41:56.229 -08 000000035 INF: ===================Laser 2 power 292, target 650===================
17-02-28 19:41:56.230 -08 000000067 INF: Laser 1 power 523, target 542
17-02-28 19:41:56.230 -08 000000035 INF: Laser 2 power 308, target 650
17-02-28 19:41:56.230 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:56.230 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:56.230 -08 000000067 INF: ===================Laser 1 power 523, target 542===================
17-02-28 19:41:56.230 -08 000000035 INF: ===================Laser 2 power 308, target 650===================
17-02-28 19:41:56.289 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:41:56.289 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:41:56.290 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:56.352 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:56.360 -08 000000018 INF: KloehnPump A (KLOEHNA): Pumping from 6, aspirate port PortB, aspiration rate 500, dispense rate 2500, volume 40, calling command "Pumping to Flowcell #1 pump index #0", State=Running, Depth=2, Children=0, Thread="Run", Parent="Buffer Wash", Type=SameThreadBlocking, solution delay 5000
17-02-28 19:41:56.452 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:41:56.538 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`0 (0x03)\r\n(0xFF)
17-02-28 19:41:56.538 -08 000000018 INF: Current Position of Pump is: 0
17-02-28 19:41:56.638 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1OR\r
17-02-28 19:41:56.665 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:56.765 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:56.790 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:57.040 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:57.100 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:57.200 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V10000A0R\r
17-02-28 19:41:57.230 -08 000000067 INF: ===================Laser 1 power 523, target 542===================
17-02-28 19:41:57.230 -08 000000035 INF: ===================Laser 2 power 308, target 650===================
17-02-28 19:41:57.230 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:57.230 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:57.287 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:57.288 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0499mW\r\n
17-02-28 19:41:57.288 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0328mW\r\n
17-02-28 19:41:57.288 -08 000000067 INF: ===================Laser 1 power 523, target 542===================
17-02-28 19:41:57.288 -08 000000035 INF: ===================Laser 2 power 308, target 650===================
17-02-28 19:41:57.289 -08 000000067 INF: Laser 1 power 499, target 542
17-02-28 19:41:57.289 -08 000000035 INF: Laser 2 power 328, target 650
17-02-28 19:41:57.289 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:57.289 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:57.289 -08 000000067 INF: ===================Laser 1 power 499, target 542===================
17-02-28 19:41:57.289 -08 000000035 INF: ===================Laser 2 power 328, target 650===================
17-02-28 19:41:57.387 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:57.476 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:41:57.476 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6), Aspirating port PortB===================
17-02-28 19:41:57.576 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V1600IP7680R\r
17-02-28 19:41:57.664 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:57.764 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:57.851 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:58.101 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:58.161 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:58.289 -08 000000067 INF: ===================Laser 1 power 499, target 542===================
17-02-28 19:41:58.289 -08 000000035 INF: ===================Laser 2 power 328, target 650===================
17-02-28 19:41:58.289 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:58.289 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:58.350 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0348mW\r\n
17-02-28 19:41:58.350 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0491mW\r\n
17-02-28 19:41:58.350 -08 000000035 INF: ===================Laser 2 power 328, target 650===================
17-02-28 19:41:58.350 -08 000000067 INF: ===================Laser 1 power 499, target 542===================
17-02-28 19:41:58.351 -08 000000035 INF: Laser 2 power 348, target 650
17-02-28 19:41:58.351 -08 000000067 INF: Laser 1 power 491, target 542
17-02-28 19:41:58.351 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:58.351 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:58.351 -08 000000035 INF: ===================Laser 2 power 348, target 650===================
17-02-28 19:41:58.351 -08 000000067 INF: ===================Laser 1 power 491, target 542===================
17-02-28 19:41:58.411 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:58.476 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:58.726 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:58.788 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:59.038 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:59.098 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:59.348 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:59.351 -08 000000035 INF: ===================Laser 2 power 348, target 650===================
17-02-28 19:41:59.351 -08 000000067 INF: ===================Laser 1 power 491, target 542===================
17-02-28 19:41:59.351 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:41:59.351 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:41:59.412 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:59.413 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0365mW\r\n
17-02-28 19:41:59.413 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0495mW\r\n
17-02-28 19:41:59.413 -08 000000035 INF: ===================Laser 2 power 348, target 650===================
17-02-28 19:41:59.413 -08 000000067 INF: ===================Laser 1 power 491, target 542===================
17-02-28 19:41:59.414 -08 000000035 INF: Laser 2 power 365, target 650
17-02-28 19:41:59.414 -08 000000067 INF: Laser 1 power 495, target 542
17-02-28 19:41:59.414 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:41:59.414 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:41:59.414 -08 000000035 INF: ===================Laser 2 power 365, target 650===================
17-02-28 19:41:59.414 -08 000000067 INF: ===================Laser 1 power 495, target 542===================
17-02-28 19:41:59.662 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:41:59.722 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:41:59.972 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:00.035 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:00.285 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:00.346 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:00.414 -08 000000035 INF: ===================Laser 2 power 365, target 650===================
17-02-28 19:42:00.414 -08 000000067 INF: ===================Laser 1 power 495, target 542===================
17-02-28 19:42:00.414 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:00.414 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:00.470 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0407mW\r\n
17-02-28 19:42:00.470 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0508mW\r\n
17-02-28 19:42:00.470 -08 000000035 INF: ===================Laser 2 power 365, target 650===================
17-02-28 19:42:00.470 -08 000000067 INF: ===================Laser 1 power 495, target 542===================
17-02-28 19:42:00.471 -08 000000035 INF: Laser 2 power 407, target 650
17-02-28 19:42:00.471 -08 000000067 INF: Laser 1 power 508, target 542
17-02-28 19:42:00.471 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:00.471 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:00.471 -08 000000035 INF: ===================Laser 2 power 407, target 650===================
17-02-28 19:42:00.471 -08 000000067 INF: ===================Laser 1 power 508, target 542===================
17-02-28 19:42:00.596 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:00.657 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:00.907 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:00.970 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:01.220 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:01.284 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:01.471 -08 000000035 INF: ===================Laser 2 power 407, target 650===================
17-02-28 19:42:01.471 -08 000000067 INF: ===================Laser 1 power 508, target 542===================
17-02-28 19:42:01.471 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:01.471 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:01.532 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0427mW\r\n
17-02-28 19:42:01.532 -08 000000035 INF: ===================Laser 2 power 407, target 650===================
17-02-28 19:42:01.533 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0521mW\r\n
17-02-28 19:42:01.533 -08 000000035 INF: Laser 2 power 427, target 650
17-02-28 19:42:01.533 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:01.533 -08 000000067 INF: ===================Laser 1 power 508, target 542===================
17-02-28 19:42:01.533 -08 000000035 INF: ===================Laser 2 power 427, target 650===================
17-02-28 19:42:01.534 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:01.534 -08 000000067 INF: Laser 1 power 521, target 542
17-02-28 19:42:01.534 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:01.534 -08 000000067 INF: ===================Laser 1 power 521, target 542===================
17-02-28 19:42:01.596 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:01.846 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:01.906 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:02.156 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:02.219 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:02.469 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:02.529 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:02.533 -08 000000035 INF: ===================Laser 2 power 427, target 650===================
17-02-28 19:42:02.533 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:02.534 -08 000000067 INF: ===================Laser 1 power 521, target 542===================
17-02-28 19:42:02.534 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:02.592 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0539mW\r\n
17-02-28 19:42:02.592 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0465mW\r\n
17-02-28 19:42:02.592 -08 000000067 INF: ===================Laser 1 power 521, target 542===================
17-02-28 19:42:02.592 -08 000000035 INF: ===================Laser 2 power 427, target 650===================
17-02-28 19:42:02.593 -08 000000067 INF: Laser 1 power 539, target 542
17-02-28 19:42:02.593 -08 000000035 INF: Laser 2 power 465, target 650
17-02-28 19:42:02.593 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:02.593 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:02.593 -08 000000067 INF: ===================Laser 1 power 539, target 542===================
17-02-28 19:42:02.593 -08 000000035 INF: ===================Laser 2 power 465, target 650===================
17-02-28 19:42:02.779 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:02.844 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:03.094 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:03.154 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:03.404 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:03.465 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:03.465 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:03.465 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:03.466 -08 000000018 INF: WaitCommand(5000) start
17-02-28 19:42:03.466 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6), Delay 5 of 5 seconds left===================
17-02-28 19:42:03.593 -08 000000035 INF: ===================Laser 2 power 465, target 650===================
17-02-28 19:42:03.593 -08 000000067 INF: ===================Laser 1 power 539, target 542===================
17-02-28 19:42:03.593 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:03.593 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:03.654 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0556mW\r\n
17-02-28 19:42:03.654 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0506mW\r\n
17-02-28 19:42:03.654 -08 000000067 INF: ===================Laser 1 power 539, target 542===================
17-02-28 19:42:03.654 -08 000000035 INF: ===================Laser 2 power 465, target 650===================
17-02-28 19:42:03.655 -08 000000067 INF: Laser 1 power 556, target 542
17-02-28 19:42:03.655 -08 000000035 INF: Laser 2 power 506, target 650
17-02-28 19:42:03.655 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:03.655 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:03.655 -08 000000067 INF: ===================Laser 1 power 556, target 542===================
17-02-28 19:42:03.655 -08 000000035 INF: ===================Laser 2 power 506, target 650===================
17-02-28 19:42:04.466 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:04.466 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6), Delay 4 of 5 seconds left===================
17-02-28 19:42:04.655 -08 000000035 INF: ===================Laser 2 power 506, target 650===================
17-02-28 19:42:04.655 -08 000000067 INF: ===================Laser 1 power 556, target 542===================
17-02-28 19:42:04.655 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:04.655 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:04.714 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0559mW\r\n
17-02-28 19:42:04.714 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0553mW\r\n
17-02-28 19:42:04.714 -08 000000067 INF: ===================Laser 1 power 556, target 542===================
17-02-28 19:42:04.714 -08 000000035 INF: ===================Laser 2 power 506, target 650===================
17-02-28 19:42:04.715 -08 000000067 INF: Laser 1 power 559, target 542
17-02-28 19:42:04.715 -08 000000035 INF: Laser 2 power 553, target 650
17-02-28 19:42:04.715 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:04.715 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:04.715 -08 000000067 INF: ===================Laser 1 power 559, target 542===================
17-02-28 19:42:04.715 -08 000000035 INF: ===================Laser 2 power 553, target 650===================
17-02-28 19:42:05.466 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:05.466 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6), Delay 3 of 5 seconds left===================
17-02-28 19:42:05.715 -08 000000035 INF: ===================Laser 2 power 553, target 650===================
17-02-28 19:42:05.715 -08 000000067 INF: ===================Laser 1 power 559, target 542===================
17-02-28 19:42:05.715 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:05.715 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:05.775 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0557mW\r\n
17-02-28 19:42:05.775 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0616mW\r\n
17-02-28 19:42:05.775 -08 000000067 INF: ===================Laser 1 power 559, target 542===================
17-02-28 19:42:05.775 -08 000000035 INF: ===================Laser 2 power 553, target 650===================
17-02-28 19:42:05.776 -08 000000067 INF: Laser 1 power 557, target 542
17-02-28 19:42:05.776 -08 000000035 INF: Laser 2 power 616, target 650
17-02-28 19:42:05.776 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:05.776 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:05.776 -08 000000067 INF: ===================Laser 1 power 557, target 542===================
17-02-28 19:42:05.776 -08 000000035 INF: ===================Laser 2 power 616, target 650===================
17-02-28 19:42:06.467 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:06.467 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6), Delay 2 of 5 seconds left===================
17-02-28 19:42:06.777 -08 000000035 INF: ===================Laser 2 power 616, target 650===================
17-02-28 19:42:06.777 -08 000000067 INF: ===================Laser 1 power 557, target 542===================
17-02-28 19:42:06.777 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:06.777 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:06.836 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0551mW\r\n
17-02-28 19:42:06.836 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0699mW\r\n
17-02-28 19:42:06.836 -08 000000067 INF: ===================Laser 1 power 557, target 542===================
17-02-28 19:42:06.836 -08 000000035 INF: ===================Laser 2 power 616, target 650===================
17-02-28 19:42:06.837 -08 000000067 INF: Laser 1 power 551, target 542
17-02-28 19:42:06.837 -08 000000035 INF: Laser 2 power 699, target 650
17-02-28 19:42:06.837 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:06.837 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:06.837 -08 000000067 INF: ===================Laser 1 power 551, target 542===================
17-02-28 19:42:06.837 -08 000000035 INF: ===================Laser 2 power 699, target 650===================
17-02-28 19:42:07.467 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:07.467 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6), Delay 1 of 5 seconds left===================
17-02-28 19:42:07.837 -08 000000035 INF: ===================Laser 2 power 699, target 650===================
17-02-28 19:42:07.837 -08 000000067 INF: ===================Laser 1 power 551, target 542===================
17-02-28 19:42:07.837 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:07.837 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:07.897 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0545mW\r\n
17-02-28 19:42:07.897 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0749mW\r\n
17-02-28 19:42:07.897 -08 000000035 INF: ===================Laser 2 power 699, target 650===================
17-02-28 19:42:07.897 -08 000000067 INF: ===================Laser 1 power 551, target 542===================
17-02-28 19:42:07.898 -08 000000067 INF: Laser 1 power 545, target 542
17-02-28 19:42:07.898 -08 000000035 INF: Laser 2 power 749, target 650
17-02-28 19:42:07.898 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:07.898 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:07.899 -08 000000067 INF: ===================Laser 1 power 545, target 542===================
17-02-28 19:42:07.899 -08 000000035 INF: ===================Laser 2 power 749, target 650===================
17-02-28 19:42:08.467 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:08.467 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:08.467 -08 000000018 INF: WaitCommand(5000) end
17-02-28 19:42:08.467 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:08.566 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:42:08.646 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`7680 (0x03)\r\n(0xFF)
17-02-28 19:42:08.646 -08 000000018 INF: Current Position of Pump is: 7680
17-02-28 19:42:08.746 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:42:08.832 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`7680 (0x03)\r\n(0xFF)
17-02-28 19:42:08.832 -08 000000018 INF: Current Position of Pump is: 7680
17-02-28 19:42:08.832 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6), Dispensing port PortC===================
17-02-28 19:42:08.899 -08 000000035 INF: ===================Laser 2 power 749, target 650===================
17-02-28 19:42:08.899 -08 000000067 INF: ===================Laser 1 power 545, target 542===================
17-02-28 19:42:08.899 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:08.899 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:08.932 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V8000OD7680R\r
17-02-28 19:42:08.957 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0538mW\r\n
17-02-28 19:42:08.957 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0751mW\r\n
17-02-28 19:42:08.957 -08 000000067 INF: ===================Laser 1 power 545, target 542===================
17-02-28 19:42:08.957 -08 000000035 INF: ===================Laser 2 power 749, target 650===================
17-02-28 19:42:08.958 -08 000000067 INF: Laser 1 power 538, target 542
17-02-28 19:42:08.958 -08 000000035 INF: Laser 2 power 751, target 650
17-02-28 19:42:08.958 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:08.958 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:08.958 -08 000000067 INF: ===================Laser 1 power 538, target 542===================
17-02-28 19:42:08.958 -08 000000035 INF: ===================Laser 2 power 751, target 650===================
17-02-28 19:42:09.021 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:09.121 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:09.207 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:09.457 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:09.520 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:09.770 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:09.832 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:09.958 -08 000000067 INF: ===================Laser 1 power 538, target 542===================
17-02-28 19:42:09.958 -08 000000035 INF: ===================Laser 2 power 751, target 650===================
17-02-28 19:42:09.958 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:09.958 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:10.018 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0717mW\r\n
17-02-28 19:42:10.018 -08 000000035 INF: ===================Laser 2 power 751, target 650===================
17-02-28 19:42:10.019 -08 000000035 INF: Laser 2 power 717, target 650
17-02-28 19:42:10.019 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:10.019 -08 000000035 INF: ===================Laser 2 power 717, target 650===================
17-02-28 19:42:10.020 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0534mW\r\n
17-02-28 19:42:10.020 -08 000000067 INF: ===================Laser 1 power 538, target 542===================
17-02-28 19:42:10.021 -08 000000067 INF: Laser 1 power 534, target 542
17-02-28 19:42:10.021 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:10.021 -08 000000067 INF: ===================Laser 1 power 534, target 542===================
17-02-28 19:42:10.082 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:10.144 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:10.394 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:10.454 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:10.454 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Pumping Reagent HB2 (6)===================
17-02-28 19:42:10.454 -08 000000018 INF: KloehnPump A (KLOEHNA): Waiting 1000 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-02-28 19:42:11.019 -08 000000035 INF: ===================Laser 2 power 717, target 650===================
17-02-28 19:42:11.019 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:11.021 -08 000000067 INF: ===================Laser 1 power 534, target 542===================
17-02-28 19:42:11.021 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:11.081 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0658mW\r\n
17-02-28 19:42:11.081 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0536mW\r\n
17-02-28 19:42:11.081 -08 000000035 INF: ===================Laser 2 power 717, target 650===================
17-02-28 19:42:11.081 -08 000000067 INF: ===================Laser 1 power 534, target 542===================
17-02-28 19:42:11.082 -08 000000035 INF: Laser 2 power 658, target 650
17-02-28 19:42:11.082 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:11.082 -08 000000067 INF: Laser 1 power 536, target 542
17-02-28 19:42:11.082 -08 000000035 INF: ===================Laser 2 power 658, target 650===================
17-02-28 19:42:11.082 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:11.082 -08 000000067 INF: ===================Laser 1 power 536, target 542===================
17-02-28 19:42:11.554 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1IR\r
17-02-28 19:42:11.641 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:11.741 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:11.827 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:12.077 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:12.082 -08 000000067 INF: ===================Laser 1 power 536, target 542===================
17-02-28 19:42:12.082 -08 000000035 INF: ===================Laser 2 power 658, target 650===================
17-02-28 19:42:12.082 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:12.082 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:12.140 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:12.140 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:42:12.140 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash, Closing shutoff valve===================
17-02-28 19:42:12.141 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0539mW\r\n
17-02-28 19:42:12.141 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0619mW\r\n
17-02-28 19:42:12.141 -08 000000067 INF: ===================Laser 1 power 536, target 542===================
17-02-28 19:42:12.141 -08 000000035 INF: ===================Laser 2 power 658, target 650===================
17-02-28 19:42:12.142 -08 000000067 INF: Laser 1 power 539, target 542
17-02-28 19:42:12.142 -08 000000035 INF: Laser 2 power 619, target 650
17-02-28 19:42:12.142 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:12.142 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:12.142 -08 000000067 INF: ===================Laser 1 power 539, target 542===================
17-02-28 19:42:12.142 -08 000000035 INF: ===================Laser 2 power 619, target 650===================
17-02-28 19:42:12.636 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:42:12.637 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:42:12.637 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Buffer Wash===================
17-02-28 19:42:12.638 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle===================
17-02-28 19:42:12.639 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:12.639 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:12.639 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:12.640 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Flowcell Temp 60°===================
17-02-28 19:42:12.640 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Flowcell Temp 60°===================
17-02-28 19:42:12.640 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Flowcell Temp 60°, FC temperature to 60°===================
17-02-28 19:42:12.886 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Flowcell Temp 60°===================
17-02-28 19:42:12.886 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Flowcell Temp 60°===================
17-02-28 19:42:12.887 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Flowcell Temp 60°===================
17-02-28 19:42:12.888 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Flowcell Temp 60°===================
17-02-28 19:42:12.888 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:12.888 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:12.889 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:12.889 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:12.950 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:12.950 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Selecting Reagent HIM (1)===================
17-02-28 19:42:12.950 -08 000000018 INF: Valve A1: Go to position 1
17-02-28 19:42:12.950 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:42:13.012 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 6\r
17-02-28 19:42:13.012 -08 000000018 INF: Valve A1: 17.469 seconds since last move, > 10.000 seconds required between moves
17-02-28 19:42:13.012 -08 000000018 INF: Valve A1: Taking longest path 'CC' from 6 to 1 to avoid 7
17-02-28 19:42:13.012 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CC1\r
17-02-28 19:42:13.012 -08 000000018 INF: SerialPort A1 (VICIA1): Recv  (discarded)
17-02-28 19:42:13.012 -08 000000018 INF: SerialPort A1 (VICIA1): Xmit CP\r
17-02-28 19:42:13.142 -08 000000067 INF: ===================Laser 1 power 539, target 542===================
17-02-28 19:42:13.142 -08 000000035 INF: ===================Laser 2 power 619, target 650===================
17-02-28 19:42:13.142 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:13.142 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:13.202 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0613mW\r\n
17-02-28 19:42:13.202 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0544mW\r\n
17-02-28 19:42:13.202 -08 000000035 INF: ===================Laser 2 power 619, target 650===================
17-02-28 19:42:13.202 -08 000000067 INF: ===================Laser 1 power 539, target 542===================
17-02-28 19:42:13.203 -08 000000035 INF: Laser 2 power 613, target 650
17-02-28 19:42:13.203 -08 000000067 INF: Laser 1 power 544, target 542
17-02-28 19:42:13.203 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:13.203 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:13.203 -08 000000035 INF: ===================Laser 2 power 613, target 650===================
17-02-28 19:42:13.203 -08 000000067 INF: ===================Laser 1 power 544, target 542===================
17-02-28 19:42:13.638 -08 000000018 INF: SerialPort A1 (VICIA1): Recv Position is  = 1\r
17-02-28 19:42:13.638 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:13.638 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Opening shutoff valve===================
17-02-28 19:42:14.008 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:14.009 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:14.050 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:14.137 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:14.145 -08 000000018 INF: KloehnPump A (KLOEHNA): Pumping from 1, aspirate port PortB, aspiration rate 250, dispense rate 2500, volume 50, calling command "Pumping to Flowcell #1 pump index #0", State=Running, Depth=2, Children=0, Thread="Run", Parent="Incorporation", Type=SameThreadBlocking, solution delay 5000
17-02-28 19:42:14.203 -08 000000067 INF: ===================Laser 1 power 544, target 542===================
17-02-28 19:42:14.203 -08 000000035 INF: ===================Laser 2 power 613, target 650===================
17-02-28 19:42:14.203 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:14.203 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:14.237 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:42:14.262 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0621mW\r\n
17-02-28 19:42:14.262 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0545mW\r\n
17-02-28 19:42:14.262 -08 000000035 INF: ===================Laser 2 power 613, target 650===================
17-02-28 19:42:14.262 -08 000000067 INF: ===================Laser 1 power 544, target 542===================
17-02-28 19:42:14.263 -08 000000035 INF: Laser 2 power 621, target 650
17-02-28 19:42:14.263 -08 000000067 INF: Laser 1 power 545, target 542
17-02-28 19:42:14.263 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:14.263 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:14.263 -08 000000035 INF: ===================Laser 2 power 621, target 650===================
17-02-28 19:42:14.263 -08 000000067 INF: ===================Laser 1 power 545, target 542===================
17-02-28 19:42:14.323 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`0 (0x03)\r\n(0xFF)
17-02-28 19:42:14.323 -08 000000018 INF: Current Position of Pump is: 0
17-02-28 19:42:14.423 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1OR\r
17-02-28 19:42:14.512 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:14.612 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:14.699 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:14.949 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:15.011 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:15.111 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V10000A0R\r
17-02-28 19:42:15.198 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:15.263 -08 000000067 INF: ===================Laser 1 power 545, target 542===================
17-02-28 19:42:15.263 -08 000000035 INF: ===================Laser 2 power 621, target 650===================
17-02-28 19:42:15.263 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:15.263 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:15.298 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:15.323 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:15.323 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Aspirating port PortB===================
17-02-28 19:42:15.324 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0546mW\r\n
17-02-28 19:42:15.324 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0641mW\r\n
17-02-28 19:42:15.324 -08 000000067 INF: ===================Laser 1 power 545, target 542===================
17-02-28 19:42:15.324 -08 000000035 INF: ===================Laser 2 power 621, target 650===================
17-02-28 19:42:15.325 -08 000000067 INF: Laser 1 power 546, target 542
17-02-28 19:42:15.325 -08 000000035 INF: Laser 2 power 641, target 650
17-02-28 19:42:15.325 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:15.325 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:15.325 -08 000000067 INF: ===================Laser 1 power 546, target 542===================
17-02-28 19:42:15.325 -08 000000035 INF: ===================Laser 2 power 641, target 650===================
17-02-28 19:42:15.423 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V800IP9600R\r
17-02-28 19:42:15.510 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:15.610 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:15.697 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:15.947 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:16.007 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:16.258 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:16.320 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:16.326 -08 000000067 INF: ===================Laser 1 power 546, target 542===================
17-02-28 19:42:16.326 -08 000000035 INF: ===================Laser 2 power 641, target 650===================
17-02-28 19:42:16.326 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Xmit POWER?\r
17-02-28 19:42:16.326 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:16.386 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0662mW\r\n
17-02-28 19:42:16.386 -08 000000067 INF: Laser 1 - Smd6000 Green 532 APC: Recv  0543mW\r\n
17-02-28 19:42:16.386 -08 000000035 INF: ===================Laser 2 power 641, target 650===================
17-02-28 19:42:16.386 -08 000000067 INF: ===================Laser 1 power 546, target 542===================
17-02-28 19:42:16.387 -08 000000035 INF: Laser 2 power 662, target 650
17-02-28 19:42:16.387 -08 000000067 INF: Laser 1 power 543, target 542
17-02-28 19:42:16.387 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:16.387 -08 000000067 INF: ===================Restore Laser1 Power, LaserPowerPolling===================
17-02-28 19:42:16.387 -08 000000067 INF: Laser 1 reached close enough to target power 542 mW after 27.00 seconds
17-02-28 19:42:16.387 -08 000000035 INF: ===================Laser 2 power 662, target 650===================
17-02-28 19:42:16.387 -08 000000067 INF: ===================Restore Laser1 Power===================
17-02-28 19:42:16.388 -08 000000067 INF: ======================================
17-02-28 19:42:16.570 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:16.632 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:16.882 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:16.945 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:17.195 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:17.256 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:17.387 -08 000000035 INF: ===================Laser 2 power 662, target 650===================
17-02-28 19:42:17.387 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:17.444 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0676mW\r\n
17-02-28 19:42:17.444 -08 000000035 INF: ===================Laser 2 power 662, target 650===================
17-02-28 19:42:17.445 -08 000000035 INF: Laser 2 power 676, target 650
17-02-28 19:42:17.445 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:17.445 -08 000000035 INF: ===================Laser 2 power 676, target 650===================
17-02-28 19:42:17.506 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:17.568 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:17.818 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:17.880 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:18.130 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:18.192 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:18.442 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:18.445 -08 000000035 INF: ===================Laser 2 power 676, target 650===================
17-02-28 19:42:18.445 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:18.504 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:18.505 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0671mW\r\n
17-02-28 19:42:18.505 -08 000000035 INF: ===================Laser 2 power 676, target 650===================
17-02-28 19:42:18.506 -08 000000035 INF: Laser 2 power 671, target 650
17-02-28 19:42:18.506 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:18.506 -08 000000035 INF: ===================Laser 2 power 671, target 650===================
17-02-28 19:42:18.754 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:18.818 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:19.068 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:19.128 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:19.378 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:19.440 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:19.506 -08 000000035 INF: ===================Laser 2 power 671, target 650===================
17-02-28 19:42:19.506 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Xmit POWER?\r
17-02-28 19:42:19.567 -08 000000035 INF: Laser 2 - Smd6000 Red 660 APC: Recv  0665mW\r\n
17-02-28 19:42:19.567 -08 000000035 INF: ===================Laser 2 power 671, target 650===================
17-02-28 19:42:19.568 -08 000000035 INF: Laser 2 power 665, target 650
17-02-28 19:42:19.568 -08 000000035 INF: ===================Restore Laser2 Power, LaserPowerPolling===================
17-02-28 19:42:19.568 -08 000000035 INF: Laser 2 gave up waiting to reach target power 650 mW after 30.00 seconds
17-02-28 19:42:19.568 -08 000000035 INF: ===================Restore Laser2 Power===================
17-02-28 19:42:19.569 -08 000000035 INF: ======================================
17-02-28 19:42:19.570 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:19.571 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:19.571 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:19.572 -08 000000039 INF: ===================Move Emission Filter 11(sim) to IntoPath===================
17-02-28 19:42:19.572 -08 000000040 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:42:19.572 -08 000000040 INF: Emission Filter 12: Moving IntoPath
17-02-28 19:42:19.572 -08 000000040 INF: FPGA: Xmit EM2RD\n
17-02-28 19:42:19.573 -08 000000039 INF: ======================================
17-02-28 19:42:19.627 -08 000000053 INF: FPGA: Recv EM2RD 1 0 1 0
17-02-28 19:42:19.627 -08 000000040 INF: Emission Filter 12: Emission filter channel 1 slider 2 status: OutOfPathSensor = True, inPathSensor = False
17-02-28 19:42:19.627 -08 000000040 INF: Emission Filter 12: Before move, position = OutOfPath, In-path sensor = False, Out-of-path sensor = True
17-02-28 19:42:19.627 -08 000000040 INF: FPGA: Xmit EM2I\n
17-02-28 19:42:19.690 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:19.752 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:20.002 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:20.066 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:20.316 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:20.376 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:20.626 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:20.690 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:20.813 -08 000000048 INF: FPGA: Recv EM2I 
17-02-28 19:42:20.813 -08 000000040 INF: Emission Filter 12: Moved Into path in 1240 ms
17-02-28 19:42:20.813 -08 000000040 INF: FPGA: Xmit EM2RD\n
17-02-28 19:42:20.875 -08 000000055 INF: FPGA: Recv EM2RD 1 1 0 0
17-02-28 19:42:20.875 -08 000000040 INF: Emission Filter 12: Emission filter channel 1 slider 2 status: OutOfPathSensor = False, inPathSensor = True
17-02-28 19:42:20.875 -08 000000040 INF: Emission Filter 12: After move, position = IntoPath, In-path sensor = True, Out-of-path sensor = False
17-02-28 19:42:20.875 -08 000000040 INF: ======================================
17-02-28 19:42:20.876 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:20.877 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:20.878 -08 000000042 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:42:20.878 -08 000000042 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:42:20.939 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:42:20.939 -08 000000042 INF: <AUTOTILT - FINAL TILT POSITIONS> 
17-02-28 19:42:20.939 -08 000000042 INF: 4.998974, 
17-02-28 19:42:20.939 -08 000000042 INF: 5.393944, 
17-02-28 19:42:20.939 -08 000000042 INF: 5.34035, 
17-02-28 19:42:20.939 -08 000000042 INF: 
17-02-28 19:42:20.939 -08 000000042 INF: <AUTOTILT - FINAL Z FOCUS POINTS> 
17-02-28 19:42:20.939 -08 000000042 INF: -0.123340262110573, 
17-02-28 19:42:20.939 -08 000000042 INF: -0.122251514613805, 
17-02-28 19:42:20.939 -08 000000042 INF: -0.119728003244696, 
17-02-28 19:42:20.939 -08 000000042 INF: 
17-02-28 19:42:20.939 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:20.939 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:20.939 -08 000000042 INF: Z Motor: Moving to -0.1200 mm, started at -0.1233 mm
17-02-28 19:42:20.940 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:20.940 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:42:20.999 -08 000000039 INF: FPGA: Recv ZTRG 
17-02-28 19:42:20.999 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:42:21.000 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:21.061 -08 000000020 INF: FPGA: Recv ZYT 
17-02-28 19:42:21.061 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:42:21.061 -08 000000042 INF: FPGA: Xmit ZMV 31457\n
17-02-28 19:42:21.125 -08 000000101 INF: FPGA: Recv ZMV 
17-02-28 19:42:21.125 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 63.9108 ms
17-02-28 19:42:21.125 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:42:21.187 -08 000000040 INF: FPGA: Recv ZDACR 31457
17-02-28 19:42:21.187 -08 000000042 INF: Z Motor: MoveAndTrigger took 247.3395 ms w/comms
17-02-28 19:42:21.187 -08 000000042 INF: Z Motor: After move to -0.1200, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:42:21.187 -08 000000042 INF: Z Motor: MoveAbsStepped took 247.4863 ms
17-02-28 19:42:21.187 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:21.188 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:21.189 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:21.217 -08 000000042 INF: CurrentChannel = LaserIdx 1, SensorIdx 0, Excitation EX(Channel Reflective, Filter OD2.5, Index 2), Emission EM(Channel Reflective, Filter Open, Index 0), Channel 'Reflective', Section [Sequencing Channel Reflective]
17-02-28 19:42:21.229 -08 000000042 INF: CurrentChannel = LaserIdx 1, SensorIdx 0, Excitation EX(Channel Reflective, Filter OD2.5, Index 2), Emission EM(Channel Reflective, Filter Open, Index 0), Channel 'Reflective', Section [Sequencing Channel Reflective]
17-02-28 19:42:21.250 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:21.281 -08 000000042 INF: CurrentChannel = LaserIdx 1, SensorIdx 0, Excitation EX(Channel Reflective, Filter OD2.5, Index 2), Emission EM(Channel Reflective, Filter Open, Index 0), Channel 'Reflective', Section [Sequencing Channel Reflective]
17-02-28 19:42:21.292 -08 000000042 INF: CurrentChannel = LaserIdx 1, SensorIdx 0, Excitation EX(Channel Reflective, Filter OD2.5, Index 2), Emission EM(Channel Reflective, Filter Open, Index 0), Channel 'Reflective', Section [Sequencing Channel Reflective]
17-02-28 19:42:21.314 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:21.318 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:21.318 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:21.319 -08 000000042 INF: Compensator: Remaining OutOfPath
17-02-28 19:42:21.319 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:21.319 -08 000000042 INF: Compensator: Remaining OutOfPath
17-02-28 19:42:21.322 -08 000000042 INF: Transformed XStagePosition from 69.147 mm to 69.1469955444336 mm.
17-02-28 19:42:21.331 -08 000000042 INF: Transformed StartingYStagePosition from 40.5099098205566 mm to 40.5099098205566 mm.
17-02-28 19:42:21.331 -08 000000042 INF: Transformed StartingYStageITFPosition from 40.3099098205566 mm to 40.3099098205566 mm.
17-02-28 19:42:21.331 -08 000000042 INF: Transformed TriggerYStagePosition from 40.3099098205566 mm to 40.3099098205566 mm.
17-02-28 19:42:21.331 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:21.332 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:21.335 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:42:21.335 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:42:21.336 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:42:21.375 -08 000000070 INF: FPGA: Recv ZSTEP 
17-02-28 19:42:21.375 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:21.375 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:21.375 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.1200 mm
17-02-28 19:42:21.376 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:42:21.436 -08 000000053 INF: FPGA: Recv ZTRG 
17-02-28 19:42:21.436 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:42:21.500 -08 000000037 INF: FPGA: Recv ZYT 
17-02-28 19:42:21.500 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:42:21.501 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:42:21.562 -08 000000060 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:42:21.562 -08 000000060 INF: FPGA: Recv ZMV 
17-02-28 19:42:21.562 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:42:21.562 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 61.2307 ms
17-02-28 19:42:21.562 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:42:21.564 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:21.625 -08 000000055 INF: FPGA: Recv ZDACR 60292
17-02-28 19:42:21.625 -08 000000042 INF: Z Motor: MoveAndTrigger took 250.0281 ms w/comms
17-02-28 19:42:21.625 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:42:21.626 -08 000000042 INF: Z Motor: MoveAbsStepped took 250.1611 ms
17-02-28 19:42:21.626 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:21.627 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:21.627 -08 000000042 INF: Transformed XStagePosition from 69.147 mm to 69.1469955444336 mm.
17-02-28 19:42:21.635 -08 000000042 INF: Transformed StartingYStagePosition from 52.2149116516113 mm to 52.2149116516113 mm.
17-02-28 19:42:21.636 -08 000000042 INF: Transformed StartingYStageITFPosition from 52.0149116516113 mm to 52.0149116516113 mm.
17-02-28 19:42:21.636 -08 000000042 INF: Transformed TriggerYStagePosition from 52.0149116516113 mm to 52.0149116516113 mm.
17-02-28 19:42:21.636 -08 000000042 INF: Z Motor: Set Z velocity to 0.561 mm/s / 723121 16.16 format
17-02-28 19:42:21.636 -08 000000042 INF: FPGA: Xmit ZSTEP 723121\n
17-02-28 19:42:21.687 -08 000000084 INF: FPGA: Recv ZSTEP 
17-02-28 19:42:21.688 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:21.688 -08 000000042 INF: Transformed XStagePosition from 69.147 mm to 69.1469955444336 mm.
17-02-28 19:42:21.697 -08 000000042 INF: Transformed StartingYStagePosition from 52.2149116516113 mm to 52.2149116516113 mm.
17-02-28 19:42:21.697 -08 000000042 INF: Transformed StartingYStageITFPosition from 52.0149116516113 mm to 52.0149116516113 mm.
17-02-28 19:42:21.697 -08 000000042 INF: Transformed TriggerYStagePosition from 52.0149116516113 mm to 52.0149116516113 mm.
17-02-28 19:42:21.699 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:21.699 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Populating image tags===================
17-02-28 19:42:21.699 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:21.699 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 2.7 mm/sec, clearing lines = 66, image lines = 3072, channels = Emissive, TDI Z = -230.0 um, section = A_1
17-02-28 19:42:21.700 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Moving motors===================
17-02-28 19:42:21.701 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Moving motors===================
17-02-28 19:42:21.702 -08 000000069 INF: ===================MoveEmissionFilters===================
17-02-28 19:42:21.702 -08 000000064 INF: ===================Move X,Y===================
17-02-28 19:42:21.702 -08 000000053 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:21.703 -08 000000093 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:21.703 -08 000000079 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:21.703 -08 000000055 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:21.703 -08 000000064 INF: ===================Move X,Y, Parallel===================
17-02-28 19:42:21.704 -08 000000053 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:42:21.704 -08 000000093 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:21.704 -08 000000055 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:21.704 -08 000000051 INF: ===================Move X Motor without settling===================
17-02-28 19:42:21.704 -08 000000067 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:21.704 -08 000000051 INF: X Motor: Xmit PR VM\n
17-02-28 19:42:21.704 -08 000000067 INF: Y Motor: Moving to 52.2149 mm @25.000 mm/sec, started at 63.1899 mm
17-02-28 19:42:21.704 -08 000000067 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:21.704 -08 000000067 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:21.705 -08 000000099 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:42:21.705 -08 000000025 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:42:21.705 -08 000000020 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:42:21.705 -08 000000092 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:42:21.705 -08 000000027 INF: ===================Move Emission Filter 42(sim) to IntoPath===================
17-02-28 19:42:21.705 -08 000000025 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:42:21.705 -08 000000056 INF: ===================Move Emission Filter 22(sim) to IntoPath===================
17-02-28 19:42:21.705 -08 000000025 INF: ======================================
17-02-28 19:42:21.705 -08 000000056 INF: ======================================
17-02-28 19:42:21.706 -08 000000092 INF: ======================================
17-02-28 19:42:21.706 -08 000000099 INF: ======================================
17-02-28 19:42:21.706 -08 000000027 INF: ======================================
17-02-28 19:42:21.707 -08 000000079 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:21.707 -08 000000055 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:21.708 -08 000000053 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:21.708 -08 000000020 INF: ======================================
17-02-28 19:42:21.708 -08 000000099 INF: ===================Move Emission Filter 31(sim) to IntoPath===================
17-02-28 19:42:21.708 -08 000000076 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:42:21.709 -08 000000076 INF: ======================================
17-02-28 19:42:21.709 -08 000000099 INF: ======================================
17-02-28 19:42:21.709 -08 000000055 INF: ======================================
17-02-28 19:42:21.709 -08 000000053 INF: ======================================
17-02-28 19:42:21.710 -08 000000093 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:21.711 -08 000000079 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:21.711 -08 000000093 INF: ======================================
17-02-28 19:42:21.712 -08 000000079 INF: ======================================
17-02-28 19:42:21.713 -08 000000069 INF: ======================================
17-02-28 19:42:21.751 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:21.751 -08 000000051 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:42:21.751 -08 000000051 INF: X Motor: Xmit PR VI\n
17-02-28 19:42:21.751 -08 000000067 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:21.751 -08 000000067 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:21.814 -08 000000051 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:42:21.814 -08 000000051 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:42:21.814 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:21.814 -08 000000067 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:21.814 -08 000000051 INF: ======================================
17-02-28 19:42:21.877 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:21.878 -08 000000067 INF: Y Motor: Recv v 0\r
17-02-28 19:42:21.878 -08 000000067 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:21.878 -08 000000067 INF: Y Motor: Set target position to 4721491 encoder counts
17-02-28 19:42:21.878 -08 000000067 INF: Y Motor: Xmit s r0xca 4721491\r
17-02-28 19:42:21.937 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:21.938 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:21.938 -08 000000067 INF: Y Motor: Start the move command
17-02-28 19:42:21.938 -08 000000067 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:21.999 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:21.999 -08 000000067 INF: Y Motor: WaitUntilStopped 60439
17-02-28 19:42:21.999 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:22.125 -08 000000067 INF: Y Motor: Unshifted Position: 5734928
17-02-28 19:42:22.175 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:22.187 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:22.250 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:22.301 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:22.437 -08 000000067 INF: Y Motor: Unshifted Position: 5029058
17-02-28 19:42:22.487 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:22.500 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:22.560 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:22.611 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:22.748 -08 000000067 INF: Y Motor: Unshifted Position: 4721491
17-02-28 19:42:22.798 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:22.810 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:22.872 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:22.935 -08 000000067 INF: Y Motor: Unshifted Position: 4721492
17-02-28 19:42:22.935 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:22.935 -08 000000067 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:23.000 -08 000000067 INF: Y Motor: Recv v 0\r
17-02-28 19:42:23.000 -08 000000067 INF: Y Motor: Moved to 52.2149 after 1001 ms
17-02-28 19:42:23.000 -08 000000067 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:23.062 -08 000000067 INF: Y Motor: Recv v 4097\r
17-02-28 19:42:23.062 -08 000000067 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:23.062 -08 000000067 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:23.122 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:23.129 -08 000000067 INF: Y Motor: Recv v 0\r
17-02-28 19:42:23.129 -08 000000067 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:23.129 -08 000000067 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:23.185 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:23.186 -08 000000067 INF: Y Motor: Recv v 134217728\r
17-02-28 19:42:23.186 -08 000000067 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:42:23.186 -08 000000067 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:23.186 -08 000000067 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:23.250 -08 000000067 INF: Y Motor: Recv v 0\r
17-02-28 19:42:23.250 -08 000000067 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:23.250 -08 000000067 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:23.250 -08 000000067 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:23.312 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:23.312 -08 000000067 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:23.312 -08 000000067 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:23.374 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:23.374 -08 000000067 INF: ======================================
17-02-28 19:42:23.376 -08 000000064 INF: ===================Move X,Y===================
17-02-28 19:42:23.377 -08 000000064 INF: ======================================
17-02-28 19:42:23.378 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Moving motors===================
17-02-28 19:42:23.380 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:23.380 -08 000000042 INF: Y Motor: Set max velocity (2700000), unit is 0.1 counts/sec
17-02-28 19:42:23.380 -08 000000042 INF: Y Motor: Xmit s r0xcb 2700000\r
17-02-28 19:42:23.434 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:42:23.434 -08 000000042 INF: FPGA: Xmit ZFREQCL 5111\n
17-02-28 19:42:23.435 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:23.497 -08 000000076 INF: FPGA: Recv ZFREQCL
17-02-28 19:42:23.497 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Reporting Motor Positions===================
17-02-28 19:42:23.497 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:23.498 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:23.498 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:23.558 -08 000000083 INF: FPGA: Recv TDIYERD 5221494
17-02-28 19:42:23.558 -08 000000042 INF: Before scan, Y encoder from FPGA = 5221494 counts (52.215 mm)
17-02-28 19:42:23.558 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:23.559 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:23.560 -08 000000064 INF: ===================TDI Scan Setup===================
17-02-28 19:42:23.560 -08 000000054 INF: ===================Set YMotor gains for scans===================
17-02-28 19:42:23.561 -08 000000054 INF: ======================================
17-02-28 19:42:23.561 -08 000000064 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:42:23.561 -08 000000064 INF: ===================TDI Scan Setup===================
17-02-28 19:42:23.563 -08 000000064 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:23.564 -08 000000064 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:42:23.564 -08 000000064 INF: FPGA: Xmit TDIYPOS 5201491\n
17-02-28 19:42:23.620 -08 000000069 INF: FPGA: Recv TDIYPOS
17-02-28 19:42:23.620 -08 000000064 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:23.622 -08 000000064 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:42:23.622 -08 000000064 INF: FPGA: Xmit TDIYARM2 3072 1 1\n
17-02-28 19:42:23.684 -08 000000077 INF: FPGA: Recv TDIYARM2
17-02-28 19:42:23.684 -08 000000064 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:23.685 -08 000000064 INF: ===================TDI Scan Setup===================
17-02-28 19:42:23.687 -08 000000064 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:42:23.688 -08 000000064 INF: ===================TDI Scan Setup===================
17-02-28 19:42:23.689 -08 000000064 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:23.690 -08 000000064 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:23.691 -08 000000064 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:42:23.748 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:23.808 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:24.058 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:24.064 -08 000000064 INF: Camera #0 AttachBuffer (imageDataPtr = 69293288328 imgPtr = 69293288328 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:42:24.064 -08 000000064 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:42:24.064 -08 000000064 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:42:24.079 -08 000000064 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:24.081 -08 000000064 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:24.082 -08 000000064 INF: ===================TDI Scan Setup===================
17-02-28 19:42:24.084 -08 000000064 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:42:24.085 -08 000000064 INF: ===================TDI Scan Setup, Serial, Delay Next Z Move Until Y===================
17-02-28 19:42:24.085 -08 000000064 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:42:24.087 -08 000000064 INF: ===================TDI Scan Setup, Serial, Arm Z Motor===================
17-02-28 19:42:24.087 -08 000000064 INF: Z Motor: Entering ArmAbsStepped
17-02-28 19:42:24.087 -08 000000064 INF: Z Motor: Arming to move to -0.0100 mm
17-02-28 19:42:24.087 -08 000000064 INF: FPGA: Xmit ZYT 0 2\n
17-02-28 19:42:24.120 -08 000000086 INF: FPGA: Recv ZYT 
17-02-28 19:42:24.120 -08 000000064 INF: Z Motor: ZARM will arm Z motor and start the ramp when first camera image trigger pulse is sent (past camera clearing lines)
17-02-28 19:42:24.120 -08 000000064 INF: FPGA: Xmit ZARM 2621\n
17-02-28 19:42:24.121 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:24.181 -08 000000065 INF: FPGA: Recv ZARM
17-02-28 19:42:24.181 -08 000000064 INF: Z Motor: ArmAndSetTriggerMode 'ZARM' command took 60.871 ms
17-02-28 19:42:24.181 -08 000000064 INF: Z Motor: ArmAbsStepped took 93.4714 ms
17-02-28 19:42:24.181 -08 000000064 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:42:24.183 -08 000000064 INF: ===================TDI Scan Setup===================
17-02-28 19:42:24.184 -08 000000064 INF: ======================================
17-02-28 19:42:24.185 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:24.186 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:24.187 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:24.187 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:24.188 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:24.189 -08 000000063 INF: ===================Move Excitation Filter 2 (Emissive) to 'OD1.0'===================
17-02-28 19:42:24.189 -08 000000076 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:42:24.189 -08 000000063 INF: Excitation Filter 2: Moving 'Emissive' to index 3 (OD1.0)
17-02-28 19:42:24.189 -08 000000063 INF: Excitation Filter 2: Moving to 135.0000 degrees
17-02-28 19:42:24.189 -08 000000063 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:42:24.189 -08 000000076 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:42:24.189 -08 000000063 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:42:24.189 -08 000000076 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:42:24.189 -08 000000076 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.1312 ms
17-02-28 19:42:24.190 -08 000000076 INF: ======================================
17-02-28 19:42:24.371 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:24.434 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:24.557 -08 000000051 INF: FPGA: Recv EX2MV
17-02-28 19:42:24.557 -08 000000063 INF: Excitation Filter 2: Moved 107 steps in 367.7419 ms
17-02-28 19:42:24.557 -08 000000063 INF: Excitation Filter 2: Moved to 135.2810 degrees (target was 135.0000) in 367.8351 ms
17-02-28 19:42:24.557 -08 000000063 INF: Excitation Filter 2: Moved 'Emissive' to index 3 (OD1.0) in 367.9058 ms
17-02-28 19:42:24.557 -08 000000063 INF: ======================================
17-02-28 19:42:24.559 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:24.560 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:24.561 -08 000000067 INF: ===================Serial===================
17-02-28 19:42:24.561 -08 000000084 INF: ===================Camera TDI===================
17-02-28 19:42:24.561 -08 000000047 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:24.561 -08 000000065 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:24.562 -08 000000047 INF: Y Motor: Moving to 50.6518 mm @2.700 mm/sec, started at 52.2149 mm
17-02-28 19:42:24.562 -08 000000047 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:24.562 -08 000000047 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:24.562 -08 000000067 INF: ===================Serial, FPGA Z Wait===================
17-02-28 19:42:24.562 -08 000000084 INF: ===================Camera TDI, Parallel===================
17-02-28 19:42:24.562 -08 000000067 INF: FPGA: Xmit ZWAIT\n
17-02-28 19:42:24.562 -08 000000065 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:42:24.563 -08 000000079 INF: ===================Camera TDI===================
17-02-28 19:42:24.564 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:24.564 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:24.568 -08 000000065 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:42:24.621 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:24.621 -08 000000047 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:24.621 -08 000000047 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:24.682 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:24.682 -08 000000047 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:24.684 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:24.714 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:24.714 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:24.746 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:24.747 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:42:24.747 -08 000000047 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:24.747 -08 000000047 INF: Y Motor: Set target position to 4565182 encoder counts
17-02-28 19:42:24.747 -08 000000047 INF: Y Motor: Xmit s r0xca 4565182\r
17-02-28 19:42:24.809 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:24.809 -08 000000047 INF: Y Motor: Start the move command
17-02-28 19:42:24.809 -08 000000047 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:24.864 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:24.864 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:24.872 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:24.872 -08 000000047 INF: Y Motor: WaitUntilStopped 60579
17-02-28 19:42:24.872 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:24.995 -08 000000047 INF: Y Motor: Unshifted Position: 4690936
17-02-28 19:42:24.996 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:25.014 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:42:25.014 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:42:25.014 -08 000000079 INF: ===================Camera #0 Frame #1===================
17-02-28 19:42:25.045 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:25.057 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:25.167 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:42:25.167 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:42:25.167 -08 000000079 INF: ===================Camera #0 Frame #3===================
17-02-28 19:42:25.170 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:25.304 -08 000000076 INF: FPGA: Recv ZWAIT 
17-02-28 19:42:25.304 -08 000000076 INF: FPGA: Recv TDIYWAIT
17-02-28 19:42:25.304 -08 000000067 INF: ===================Serial===================
17-02-28 19:42:25.304 -08 000000065 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:25.306 -08 000000047 INF: Y Motor: Unshifted Position: 4606701
17-02-28 19:42:25.306 -08 000000067 INF: ===================Serial, Confirm position Z Motor===================
17-02-28 19:42:25.306 -08 000000065 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:42:25.307 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:25.307 -08 000000067 INF: ===================Serial===================
17-02-28 19:42:25.307 -08 000000063 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:42:25.308 -08 000000063 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:42:25.308 -08 000000063 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:42:25.308 -08 000000063 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:42:25.308 -08 000000063 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:42:25.308 -08 000000067 INF: ======================================
17-02-28 19:42:25.323 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:42:25.323 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:42:25.323 -08 000000079 INF: ===================Camera #0 Frame #6===================
17-02-28 19:42:25.333 -08 000000079 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:42:25.334 -08 000000079 INF: ===================CameraTDI Cleanup===================
17-02-28 19:42:25.338 -08 000000037 INF: RunCopyService queue size at 2/28/2017 7:42:25 PM is 2
17-02-28 19:42:25.356 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:25.357 -08 000000079 INF: Camera #0 ReleaseBuffer
17-02-28 19:42:25.357 -08 000000079 INF: ===================Camera TDI===================
17-02-28 19:42:25.368 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:25.369 -08 000000079 INF: ======================================
17-02-28 19:42:25.371 -08 000000084 INF: ===================Camera TDI===================
17-02-28 19:42:25.373 -08 000000084 INF: ======================================
17-02-28 19:42:25.481 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:25.618 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:25.618 -08 000000047 INF: Y Motor: Unshifted Position: 4565182
17-02-28 19:42:25.618 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:25.618 -08 000000047 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:25.681 -08 000000055 INF: FPGA: Recv EX2MV
17-02-28 19:42:25.681 -08 000000063 INF: Excitation Filter 2: Moved -107 steps in 373.4356 ms
17-02-28 19:42:25.681 -08 000000063 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 373.544 ms
17-02-28 19:42:25.681 -08 000000063 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 373.6181 ms
17-02-28 19:42:25.682 -08 000000063 INF: ======================================
17-02-28 19:42:25.682 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:25.683 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:42:25.683 -08 000000047 INF: Y Motor: Moved to 50.6518 after 811 ms
17-02-28 19:42:25.683 -08 000000047 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:25.683 -08 000000065 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:25.685 -08 000000065 INF: ======================================
17-02-28 19:42:25.743 -08 000000047 INF: Y Motor: Recv v 4097\r
17-02-28 19:42:25.743 -08 000000047 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:25.743 -08 000000047 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:25.808 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:42:25.808 -08 000000047 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:25.808 -08 000000047 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:25.870 -08 000000047 INF: Y Motor: Recv v 134217728\r
17-02-28 19:42:25.870 -08 000000047 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:42:25.870 -08 000000047 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:25.870 -08 000000047 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:25.931 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:42:25.931 -08 000000047 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:25.931 -08 000000047 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:25.931 -08 000000047 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:25.932 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:25.992 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:25.993 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:25.993 -08 000000047 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:25.993 -08 000000047 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:26.057 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:26.057 -08 000000047 INF: ======================================
17-02-28 19:42:26.058 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:26.060 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:26.061 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:26.061 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:42:26.117 -08 000000010 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:42:26.117 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:26.181 -08 000000054 INF: FPGA: Recv TDIYERD 5065183
17-02-28 19:42:26.181 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:42:26.243 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:26.245 -08 000000083 INF: FPGA: Recv ZADCR 2422
17-02-28 19:42:26.245 -08 000000042 INF: At scan end Y pos = 50.652 and Z pos = -0.010. Y moved -1.363 mm
17-02-28 19:42:26.246 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:42:26.305 -08 000000065 INF: FPGA: Recv TDIPULSES 3073
17-02-28 19:42:26.305 -08 000000042 INF: The FPGA sent 3072 triggers to the camera ; expected 3072
17-02-28 19:42:26.305 -08 000000042 INF: TDIScan finished after 4616.2626 ms
17-02-28 19:42:26.305 -08 000000042 INF: Image[0]: Y should trigger at 52.015 mm, 2nd row was at 52.002 mm (error = -0.013 mm)
17-02-28 19:42:26.305 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:42:26.306 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:26.367 -08 000000069 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:42:26.368 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:26.368 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:26.369 -08 000000056 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:42:26.369 -08 000000051 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:42:26.369 -08 000000050 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:42:26.370 -08 000000056 INF: ======================================
17-02-28 19:42:26.370 -08 000000051 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:42:26.370 -08 000000051 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:42:26.370 -08 000000050 INF: ======================================
17-02-28 19:42:26.433 -08 000000051 INF: Y Motor: Recv ok\r
17-02-28 19:42:26.433 -08 000000051 INF: ======================================
17-02-28 19:42:26.434 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:26.436 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:26.437 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, HandleImage(Emissive)===================
17-02-28 19:42:26.469 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:26.469 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:26.470 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:26.471 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, ETF: Extracting coords===================
17-02-28 19:42:26.478 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:26.479 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Selecting focus point===================
17-02-28 19:42:26.479 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Selecting focus point, Extracting metrics===================
17-02-28 19:42:26.556 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:26.619 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:26.869 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:26.930 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:27.070 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Selecting focus point===================
17-02-28 19:42:27.093 -08 000000042 INF: ETF for image Index#0: Best Z position at bottom surface = -0.0879806839210119Best Z position at top surface = -0.161391923749651Best Z position at top surface + compensator offset = -0.138691923749651 C:1,L:1,T
17-02-28 19:42:27.093 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 0 is -0.161391923749651
17-02-28 19:42:27.094 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 0 is 51.65865
17-02-28 19:42:27.094 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 1 is -0.0879806839210119
17-02-28 19:42:27.094 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 1 is 51.30606
17-02-28 19:42:27.094 -08 000000042 INF: Z-height at LaneTopSurface is -0.161391923749651.
17-02-28 19:42:27.094 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:27.094 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:42:27.094 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:42:27.117 -08 000000086 INF: FPGA: Recv ZSTEP 
17-02-28 19:42:27.117 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:27.119 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:27.119 -08 000000042 INF: Problem detilting Lane 1, LaneTopSurface Surface after ETF. Moving to default tilt positions: m1=4.998974, m2=5.393944, m3=5.34035
17-02-28 19:42:27.120 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:27.120 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:27.121 -08 000000054 INF: ===================Move Tilt Motor 1===================
17-02-28 19:42:27.121 -08 000000088 INF: ===================Move Tilt Motor 2===================
17-02-28 19:42:27.121 -08 000000099 INF: ===================Move Tilt Motor 3===================
17-02-28 19:42:27.122 -08 000000054 INF: ======================================
17-02-28 19:42:27.122 -08 000000099 INF: Tilt Motor 3: Moving to 5.3416 mm, started at 5.3404 mm, delta = 0.0012 mm
17-02-28 19:42:27.122 -08 000000088 INF: ======================================
17-02-28 19:42:27.122 -08 000000099 INF: FPGA: Xmit T3RD\n
17-02-28 19:42:27.179 -08 000000047 INF: FPGA: Recv T3RD 21025
17-02-28 19:42:27.179 -08 000000099 INF: Tilt Motor 3: Encoder: at motor step 3504 + 1/6
17-02-28 19:42:27.179 -08 000000099 INF: Tilt Motor 3: Moving to 21030 encoder counts
17-02-28 19:42:27.179 -08 000000099 INF: FPGA: Xmit T3MOVETO 21030\n
17-02-28 19:42:27.180 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:27.243 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:27.304 -08 000000065 INF: FPGA: Recv T3MOVETO 0
17-02-28 19:42:27.304 -08 000000099 INF: Tilt Motor 3: To move from 5.340 to 5.342 (0.001 mm) should take 1 steps, but required 0 steps (0.000 mm). Slippage = -0.002 mm (-1.23%)
17-02-28 19:42:27.304 -08 000000099 INF: FPGA: Xmit T3RD\n
17-02-28 19:42:27.366 -08 000000079 INF: FPGA: Recv T3RD 21025
17-02-28 19:42:27.366 -08 000000099 INF: Tilt Motor 3: Encoder: at motor step 3504 + 1/6
17-02-28 19:42:27.366 -08 000000099 INF: FPGA: Xmit T3RD\n
17-02-28 19:42:27.428 -08 000000058 INF: FPGA: Recv T3RD 21025
17-02-28 19:42:27.428 -08 000000099 INF: Tilt Motor 3: Encoder: at motor step 3504 + 1/6
17-02-28 19:42:27.428 -08 000000099 INF: FPGA: Xmit T3RD\n
17-02-28 19:42:27.490 -08 000000092 INF: FPGA: Recv T3RD 21025
17-02-28 19:42:27.490 -08 000000099 INF: Tilt Motor 3: Encoder: at motor step 3504 + 1/6
17-02-28 19:42:27.490 -08 000000099 INF: Tilt Motor 3: After move to 5.3416, error = -0.0012, min/max error = -0.0017/0.0013, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:42:27.490 -08 000000099 INF: Tilt Motor 3: Moved to 5.3404 after 368.0985 ms
17-02-28 19:42:27.490 -08 000000099 INF: ======================================
17-02-28 19:42:27.491 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:27.493 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:27.493 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:27.493 -08 000000042 INF: ETF Best Z: -0.1386919 mm (36357 DAC)
17-02-28 19:42:27.494 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:27.494 -08 000000042 INF: TopSurfaceZPositions[] was -0.161391923749651, so used the TopSurfaceZPositions[] (-0.161391923749651) + compensator value (0.0227).
17-02-28 19:42:27.495 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:27.495 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:27.495 -08 000000042 INF: Z Motor: Moving to -0.1387 mm, started at -0.0100 mm
17-02-28 19:42:27.495 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:42:27.552 -08 000000063 INF: FPGA: Recv ZTRG 
17-02-28 19:42:27.552 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:42:27.553 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:27.614 -08 000000037 INF: FPGA: Recv ZYT 
17-02-28 19:42:27.614 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:42:27.614 -08 000000042 INF: FPGA: Xmit ZMV 36357\n
17-02-28 19:42:27.678 -08 000000067 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:42:27.678 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:42:27.801 -08 000000039 INF: FPGA: Recv ZMV 
17-02-28 19:42:27.801 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 187.0451 ms
17-02-28 19:42:27.801 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:42:27.803 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:27.868 -08 000000076 INF: FPGA: Recv ZDACR 36357
17-02-28 19:42:27.869 -08 000000042 INF: Z Motor: MoveAndTrigger took 373.4155 ms w/comms
17-02-28 19:42:27.869 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:27.869 -08 000000042 INF: Z Motor: After move to -0.1387, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:42:27.869 -08 000000042 INF: Z Motor: MoveAbsStepped took 373.6539 ms
17-02-28 19:42:27.869 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:27.876 -08 000000042 INF: Compensator: Moving IntoPath
17-02-28 19:42:27.876 -08 000000042 INF: FPGA: Xmit MIOCOMPF\n
17-02-28 19:42:28.119 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:28.178 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:28.240 -08 000000076 INF: FPGA: Recv MIOCOMPF
17-02-28 19:42:28.240 -08 000000042 INF: Compensator: Moved IntoPath in 364 ms
17-02-28 19:42:28.240 -08 000000042 INF: Center of AC image X offset=-1.104
17-02-28 19:42:28.240 -08 000000042 INF: Center of AC image Estimated: X=69.147, Y=71.505
17-02-28 19:42:28.240 -08 000000042 INF: Center of AC image at: X=68.043, Y=71.505
17-02-28 19:42:28.243 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:28.244 -08 000000042 INF: Transformed XStagePosition from 68.043 mm to 68.0429992675781 mm.
17-02-28 19:42:28.253 -08 000000042 INF: Transformed StartingYStagePosition from 72.764826965332 mm to 72.764826965332 mm.
17-02-28 19:42:28.253 -08 000000042 INF: Transformed StartingYStageITFPosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:42:28.253 -08 000000042 INF: Transformed TriggerYStagePosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:42:28.255 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:28.255 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Populating image tags===================
17-02-28 19:42:28.255 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:28.255 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 6144, channels = Emissive, TDI Z = -138.7 um, section = A_1
17-02-28 19:42:28.256 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:28.256 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:28.257 -08 000000058 INF: ===================MoveEmissionFilters===================
17-02-28 19:42:28.257 -08 000000093 INF: ===================Move X,Y===================
17-02-28 19:42:28.257 -08 000000064 INF: ===================Move Z Motor===================
17-02-28 19:42:28.257 -08 000000064 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:28.258 -08 000000064 INF: ======================================
17-02-28 19:42:28.258 -08 000000040 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:28.258 -08 000000101 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:28.258 -08 000000094 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:28.258 -08 000000065 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:28.258 -08 000000093 INF: ===================Move X,Y, Parallel===================
17-02-28 19:42:28.259 -08 000000040 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:42:28.259 -08 000000094 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:28.259 -08 000000065 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:28.259 -08 000000009 INF: ===================Move X Motor without settling===================
17-02-28 19:42:28.259 -08 000000092 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:28.259 -08 000000009 INF: X Motor: Xmit PR VM\n
17-02-28 19:42:28.259 -08 000000092 INF: Y Motor: Moving to 72.7648 mm @25.000 mm/sec, started at 50.6518 mm
17-02-28 19:42:28.260 -08 000000092 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:28.260 -08 000000092 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:28.260 -08 000000046 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:42:28.260 -08 000000067 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:42:28.260 -08 000000039 INF: ===================Move Emission Filter 31(sim) to IntoPath===================
17-02-28 19:42:28.260 -08 000000035 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:42:28.260 -08 000000055 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:42:28.260 -08 000000063 INF: ===================Move Emission Filter 42(sim) to IntoPath===================
17-02-28 19:42:28.260 -08 000000063 INF: ======================================
17-02-28 19:42:28.261 -08 000000035 INF: ======================================
17-02-28 19:42:28.261 -08 000000055 INF: ======================================
17-02-28 19:42:28.261 -08 000000067 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:42:28.261 -08 000000067 INF: ======================================
17-02-28 19:42:28.262 -08 000000101 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:28.262 -08 000000065 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:28.262 -08 000000063 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:42:28.263 -08 000000035 INF: ===================Move Emission Filter 22(sim) to IntoPath===================
17-02-28 19:42:28.263 -08 000000063 INF: ======================================
17-02-28 19:42:28.263 -08 000000046 INF: ======================================
17-02-28 19:42:28.263 -08 000000039 INF: ======================================
17-02-28 19:42:28.263 -08 000000065 INF: ======================================
17-02-28 19:42:28.264 -08 000000035 INF: ======================================
17-02-28 19:42:28.264 -08 000000101 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:28.264 -08 000000040 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:28.265 -08 000000094 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:28.266 -08 000000101 INF: ======================================
17-02-28 19:42:28.266 -08 000000040 INF: ======================================
17-02-28 19:42:28.266 -08 000000094 INF: ======================================
17-02-28 19:42:28.267 -08 000000058 INF: ======================================
17-02-28 19:42:28.304 -08 000000009 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:42:28.304 -08 000000009 INF: X Motor: Xmit PR VI\n
17-02-28 19:42:28.304 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:42:28.304 -08 000000092 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:28.304 -08 000000092 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:28.367 -08 000000009 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:42:28.367 -08 000000009 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:42:28.367 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:42:28.367 -08 000000092 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:28.367 -08 000000009 INF: X Motor: Moving to 68.0430 mm @15.000 mm/sec, started at 69.1465 mm
17-02-28 19:42:28.367 -08 000000009 INF: X Motor: Xmit MA 3704\n
17-02-28 19:42:28.428 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:28.429 -08 000000009 INF: X Motor: Recv MA 3704\r\n>
17-02-28 19:42:28.429 -08 000000092 INF: Y Motor: Recv v 0\r
17-02-28 19:42:28.429 -08 000000092 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:28.429 -08 000000009 INF: X Motor: WaitUntilStopped 60074
17-02-28 19:42:28.429 -08 000000092 INF: Y Motor: Set target position to 6776483 encoder counts
17-02-28 19:42:28.429 -08 000000092 INF: Y Motor: Xmit s r0xca 6776483\r
17-02-28 19:42:28.492 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:28.493 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:42:28.493 -08 000000092 INF: Y Motor: Start the move command
17-02-28 19:42:28.493 -08 000000092 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:28.552 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:42:28.552 -08 000000092 INF: Y Motor: WaitUntilStopped 60885
17-02-28 19:42:28.552 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:28.678 -08 000000092 INF: Y Motor: Unshifted Position: 4642833
17-02-28 19:42:28.728 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:28.742 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:28.802 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:28.802 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:28.802 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:28.803 -08 000000018 INF: WaitCommand(5000) start
17-02-28 19:42:28.803 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 5 of 5 seconds left===================
17-02-28 19:42:28.864 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:28.990 -08 000000092 INF: Y Motor: Unshifted Position: 5350173
17-02-28 19:42:29.040 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:29.052 -08 000000009 INF: X Motor: Xmit PR ER\n
17-02-28 19:42:29.114 -08 000000009 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:42:29.114 -08 000000009 INF: X Motor: Moved to 68.0430 after 685 ms
17-02-28 19:42:29.114 -08 000000009 INF: ======================================
17-02-28 19:42:29.164 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:29.303 -08 000000092 INF: Y Motor: Unshifted Position: 6125986
17-02-28 19:42:29.353 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:29.477 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:29.615 -08 000000092 INF: Y Motor: Unshifted Position: 6749702
17-02-28 19:42:29.665 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:29.800 -08 000000092 INF: Y Motor: Unshifted Position: 6776484
17-02-28 19:42:29.800 -08 000000092 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:29.800 -08 000000092 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:29.803 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:29.803 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 4 of 5 seconds left===================
17-02-28 19:42:29.862 -08 000000092 INF: Y Motor: Recv v 0\r
17-02-28 19:42:29.862 -08 000000092 INF: Y Motor: Moved to 72.7648 after 1310 ms
17-02-28 19:42:29.862 -08 000000092 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:29.927 -08 000000092 INF: Y Motor: Recv v 4096\r
17-02-28 19:42:29.927 -08 000000092 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:29.927 -08 000000092 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:29.989 -08 000000092 INF: Y Motor: Recv v 0\r
17-02-28 19:42:29.989 -08 000000092 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:29.989 -08 000000092 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:30.051 -08 000000092 INF: Y Motor: Recv v 402653184\r
17-02-28 19:42:30.051 -08 000000092 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:42:30.051 -08 000000092 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:30.051 -08 000000092 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:30.115 -08 000000092 INF: Y Motor: Recv v 0\r
17-02-28 19:42:30.115 -08 000000092 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:30.115 -08 000000092 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:30.115 -08 000000092 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:30.175 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:42:30.175 -08 000000092 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:30.175 -08 000000092 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:30.237 -08 000000092 INF: Y Motor: Recv ok\r
17-02-28 19:42:30.237 -08 000000092 INF: ======================================
17-02-28 19:42:30.238 -08 000000093 INF: ===================Move X,Y===================
17-02-28 19:42:30.240 -08 000000093 INF: ======================================
17-02-28 19:42:30.241 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:30.242 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:30.242 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:42:30.242 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:42:30.299 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:42:30.299 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:42:30.362 -08 000000094 INF: FPGA: Recv ZFREQCL
17-02-28 19:42:30.362 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Reporting Motor Positions===================
17-02-28 19:42:30.362 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:30.362 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:30.424 -08 000000077 INF: FPGA: Recv TDIYERD 7276484
17-02-28 19:42:30.424 -08 000000042 INF: Before scan, Y encoder from FPGA = 7276484 counts (72.765 mm)
17-02-28 19:42:30.424 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:30.425 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:30.426 -08 000000045 INF: ===================TDI Scan Setup===================
17-02-28 19:42:30.426 -08 000000087 INF: ===================Set YMotor gains for scans===================
17-02-28 19:42:30.426 -08 000000087 INF: ======================================
17-02-28 19:42:30.427 -08 000000045 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:42:30.427 -08 000000045 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:42:30.486 -08 000000044 INF: FPGA: Recv ZSEL 
17-02-28 19:42:30.486 -08 000000045 INF: FPGA: Xmit ZDACW 36357\n
17-02-28 19:42:30.548 -08 000000046 INF: FPGA: Recv ZDACW 
17-02-28 19:42:30.548 -08 000000045 INF: ===================Initializing FPGA for Dither Focus===================
17-02-28 19:42:30.548 -08 000000045 INF: DEBUG: TDIScan after moving to initial positions: Z = -0.139 mm, Active = True
17-02-28 19:42:30.549 -08 000000045 INF: FPGA: Xmit ZSEL 1\n
17-02-28 19:42:30.610 -08 000000099 INF: FPGA: Recv ZSEL 
17-02-28 19:42:30.610 -08 000000045 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:42:30.610 -08 000000045 INF: ===================TDI Scan Setup===================
17-02-28 19:42:30.612 -08 000000045 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:42:30.612 -08 000000045 INF: ===================TDI Scan Setup===================
17-02-28 19:42:30.614 -08 000000045 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:30.614 -08 000000045 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:42:30.615 -08 000000045 INF: FPGA: Xmit TDIYPOS 7256483\n
17-02-28 19:42:30.672 -08 000000047 INF: FPGA: Recv TDIYPOS
17-02-28 19:42:30.672 -08 000000045 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:30.674 -08 000000045 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:42:30.674 -08 000000045 INF: FPGA: Xmit TDIYARM2 6144 1 1\n
17-02-28 19:42:30.734 -08 000000087 INF: FPGA: Recv TDIYARM2
17-02-28 19:42:30.734 -08 000000045 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:30.735 -08 000000045 INF: ===================TDI Scan Setup===================
17-02-28 19:42:30.737 -08 000000045 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:42:30.737 -08 000000045 INF: ===================TDI Scan Setup===================
17-02-28 19:42:30.739 -08 000000045 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:30.739 -08 000000045 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:30.740 -08 000000045 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:42:30.804 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:30.804 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 3 of 5 seconds left===================
17-02-28 19:42:31.146 -08 000000045 INF: Camera #0 AttachBuffer (imageDataPtr = 70077593520 imgPtr = 70077593520 , attachBufferNumFrames = 24 , frameSize = 1638400,
17-02-28 19:42:31.146 -08 000000045 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 6144
17-02-28 19:42:31.146 -08 000000045 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:42:31.161 -08 000000045 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:31.163 -08 000000045 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:31.164 -08 000000045 INF: ===================TDI Scan Setup===================
17-02-28 19:42:31.165 -08 000000045 INF: ======================================
17-02-28 19:42:31.166 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:31.167 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:31.167 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:31.168 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:31.168 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:31.169 -08 000000087 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:42:31.169 -08 000000035 INF: ===================Move Excitation Filter 2 (Emissive) to 'OD1.0'===================
17-02-28 19:42:31.169 -08 000000087 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:42:31.169 -08 000000087 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:42:31.170 -08 000000087 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0677 ms
17-02-28 19:42:31.170 -08 000000035 INF: Excitation Filter 2: Moving 'Emissive' to index 3 (OD1.0)
17-02-28 19:42:31.170 -08 000000035 INF: Excitation Filter 2: Moving to 135.0000 degrees
17-02-28 19:42:31.170 -08 000000035 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:42:31.170 -08 000000035 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:42:31.170 -08 000000087 INF: ======================================
17-02-28 19:42:31.547 -08 000000070 INF: FPGA: Recv EX2MV
17-02-28 19:42:31.547 -08 000000035 INF: Excitation Filter 2: Moved 107 steps in 377.1891 ms
17-02-28 19:42:31.547 -08 000000035 INF: Excitation Filter 2: Moved to 135.2810 degrees (target was 135.0000) in 377.2963 ms
17-02-28 19:42:31.547 -08 000000035 INF: Excitation Filter 2: Moved 'Emissive' to index 3 (OD1.0) in 377.4015 ms
17-02-28 19:42:31.547 -08 000000035 INF: ======================================
17-02-28 19:42:31.549 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:31.550 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:31.551 -08 000000009 INF: ===================Camera TDI===================
17-02-28 19:42:31.551 -08 000000077 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:31.551 -08 000000067 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:31.551 -08 000000067 INF: Y Motor: Moving to 70.1419 mm @1.500 mm/sec, started at 72.7648 mm
17-02-28 19:42:31.551 -08 000000067 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:31.551 -08 000000067 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:31.551 -08 000000009 INF: ===================Camera TDI, Parallel===================
17-02-28 19:42:31.552 -08 000000077 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:42:31.552 -08 000000077 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:42:31.552 -08 000000010 INF: ===================Camera TDI===================
17-02-28 19:42:31.553 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:31.553 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:31.611 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:31.611 -08 000000067 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:31.611 -08 000000067 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:31.673 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:31.673 -08 000000067 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:31.703 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:31.703 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:31.735 -08 000000067 INF: Y Motor: Recv v 0\r
17-02-28 19:42:31.735 -08 000000067 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:31.735 -08 000000067 INF: Y Motor: Set target position to 6514189 encoder counts
17-02-28 19:42:31.735 -08 000000067 INF: Y Motor: Xmit s r0xca 6514189\r
17-02-28 19:42:31.799 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:31.799 -08 000000067 INF: Y Motor: Start the move command
17-02-28 19:42:31.799 -08 000000067 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:31.805 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:31.805 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 2 of 5 seconds left===================
17-02-28 19:42:31.853 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:31.853 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:31.863 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:31.863 -08 000000067 INF: Y Motor: WaitUntilStopped 61749
17-02-28 19:42:31.863 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:31.985 -08 000000067 INF: Y Motor: Unshifted Position: 6758514
17-02-28 19:42:32.003 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:32.003 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:32.035 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:32.153 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:42:32.153 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:42:32.153 -08 000000010 INF: ===================Camera #0 Frame #1===================
17-02-28 19:42:32.159 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:32.299 -08 000000067 INF: Y Motor: Unshifted Position: 6711955
17-02-28 19:42:32.306 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 1, frameCount = 2.
17-02-28 19:42:32.306 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:42:32.306 -08 000000010 INF: ===================Camera #0 Frame #3===================
17-02-28 19:42:32.349 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:32.463 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:42:32.463 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:42:32.463 -08 000000010 INF: ===================Camera #0 Frame #4===================
17-02-28 19:42:32.473 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:32.609 -08 000000067 INF: Y Motor: Unshifted Position: 6664857
17-02-28 19:42:32.616 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:42:32.616 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:42:32.616 -08 000000010 INF: ===================Camera #0 Frame #5===================
17-02-28 19:42:32.659 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:32.769 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:42:32.769 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:42:32.769 -08 000000010 INF: ===================Camera #0 Frame #6===================
17-02-28 19:42:32.783 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:32.805 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:32.805 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 1 of 5 seconds left===================
17-02-28 19:42:32.922 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 7, frameCount = 8.
17-02-28 19:42:32.922 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 8
17-02-28 19:42:32.922 -08 000000010 INF: ===================Camera #0 Frame #8===================
17-02-28 19:42:32.923 -08 000000067 INF: Y Motor: Unshifted Position: 6618007
17-02-28 19:42:32.973 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:33.079 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 8, frameCount = 9.
17-02-28 19:42:33.079 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 9
17-02-28 19:42:33.079 -08 000000010 INF: ===================Camera #0 Frame #9===================
17-02-28 19:42:33.097 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:33.232 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 9, frameCount = 10.
17-02-28 19:42:33.232 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 10
17-02-28 19:42:33.232 -08 000000010 INF: ===================Camera #0 Frame #10===================
17-02-28 19:42:33.233 -08 000000067 INF: Y Motor: Unshifted Position: 6571210
17-02-28 19:42:33.283 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:33.385 -08 000000010 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 11, frameCount = 12.
17-02-28 19:42:33.385 -08 000000010 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 12
17-02-28 19:42:33.385 -08 000000010 INF: ===================Camera #0 Frame #12===================
17-02-28 19:42:33.391 -08 000000010 INF: Camera complete - got 12 frames, processed 12 frames, expected 12 frames.
17-02-28 19:42:33.392 -08 000000010 INF: ===================CameraTDI Cleanup===================
17-02-28 19:42:33.407 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:33.417 -08 000000051 INF: FPGA: Recv TDIYWAIT
17-02-28 19:42:33.417 -08 000000077 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:33.419 -08 000000077 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:42:33.420 -08 000000010 INF: Camera #0 ReleaseBuffer
17-02-28 19:42:33.420 -08 000000088 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:42:33.420 -08 000000088 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:42:33.420 -08 000000088 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:42:33.420 -08 000000088 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:42:33.420 -08 000000010 INF: ===================Camera TDI===================
17-02-28 19:42:33.420 -08 000000088 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:42:33.422 -08 000000010 INF: ======================================
17-02-28 19:42:33.423 -08 000000009 INF: ===================Camera TDI===================
17-02-28 19:42:33.424 -08 000000009 INF: ======================================
17-02-28 19:42:33.547 -08 000000067 INF: Y Motor: Unshifted Position: 6524664
17-02-28 19:42:33.597 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:33.733 -08 000000067 INF: Y Motor: Unshifted Position: 6514188
17-02-28 19:42:33.733 -08 000000067 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:33.733 -08 000000067 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:33.793 -08 000000069 INF: FPGA: Recv EX2MV
17-02-28 19:42:33.793 -08 000000088 INF: Excitation Filter 2: Moved -107 steps in 372.9016 ms
17-02-28 19:42:33.793 -08 000000088 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 372.9989 ms
17-02-28 19:42:33.793 -08 000000088 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 373.0703 ms
17-02-28 19:42:33.793 -08 000000088 INF: ======================================
17-02-28 19:42:33.795 -08 000000067 INF: Y Motor: Recv v 0\r
17-02-28 19:42:33.795 -08 000000067 INF: Y Motor: Moved to 70.1419 after 1932 ms
17-02-28 19:42:33.795 -08 000000077 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:33.795 -08 000000067 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:33.796 -08 000000077 INF: ======================================
17-02-28 19:42:33.803 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:33.803 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:33.803 -08 000000018 INF: WaitCommand(5000) end
17-02-28 19:42:33.803 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:33.856 -08 000000067 INF: Y Motor: Recv v 4097\r
17-02-28 19:42:33.856 -08 000000067 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:33.856 -08 000000067 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:33.902 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:42:33.918 -08 000000067 INF: Y Motor: Recv v 0\r
17-02-28 19:42:33.918 -08 000000067 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:33.918 -08 000000067 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:33.982 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`9600 (0x03)\r\n(0xFF)
17-02-28 19:42:33.982 -08 000000018 INF: Current Position of Pump is: 9600
17-02-28 19:42:33.983 -08 000000067 INF: Y Motor: Recv v 134217728\r
17-02-28 19:42:33.983 -08 000000067 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:42:33.983 -08 000000067 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:33.983 -08 000000067 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:34.045 -08 000000067 INF: Y Motor: Recv v 0\r
17-02-28 19:42:34.045 -08 000000067 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:34.045 -08 000000067 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:34.045 -08 000000067 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:34.082 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:42:34.107 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:34.107 -08 000000067 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:34.107 -08 000000067 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:34.168 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`9600 (0x03)\r\n(0xFF)
17-02-28 19:42:34.168 -08 000000018 INF: Current Position of Pump is: 9600
17-02-28 19:42:34.168 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Dispensing port PortC===================
17-02-28 19:42:34.169 -08 000000067 INF: Y Motor: Recv ok\r
17-02-28 19:42:34.169 -08 000000067 INF: ======================================
17-02-28 19:42:34.170 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:34.171 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:34.172 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.172 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:42:34.229 -08 000000050 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:42:34.229 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:34.268 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V8000OD9600R\r
17-02-28 19:42:34.291 -08 000000094 INF: FPGA: Recv TDIYERD 7014190
17-02-28 19:42:34.291 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:42:34.353 -08 000000077 INF: FPGA: Recv ZADCR 36264
17-02-28 19:42:34.353 -08 000000042 INF: At scan end Y pos = 70.142 and Z pos = -0.139. Y moved -2.423 mm
17-02-28 19:42:34.353 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:42:34.354 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:34.415 -08 000000074 INF: FPGA: Recv TDIPULSES 6145
17-02-28 19:42:34.415 -08 000000042 INF: The FPGA sent 6144 triggers to the camera ; expected 6144
17-02-28 19:42:34.415 -08 000000042 INF: TDIScan finished after 6171.4945 ms
17-02-28 19:42:34.415 -08 000000042 INF: Image[0]: Y should trigger at 72.565 mm, 2nd row was at 72.552 mm (error = -0.013 mm)
17-02-28 19:42:34.416 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.416 -08 000000042 INF: Z jump check: There were 0/6144 lines (retry if > 900) at which Delta Z >= 10 um; span = 1000 lines. Largest delta = 0.000 um
17-02-28 19:42:34.417 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.417 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:42:34.454 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:34.481 -08 000000084 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:42:34.481 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.482 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:34.482 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.483 -08 000000060 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:42:34.483 -08 000000099 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:42:34.483 -08 000000094 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:42:34.483 -08 000000060 INF: ======================================
17-02-28 19:42:34.483 -08 000000094 INF: ======================================
17-02-28 19:42:34.484 -08 000000099 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:42:34.484 -08 000000099 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:42:34.542 -08 000000099 INF: Y Motor: Recv ok\r
17-02-28 19:42:34.542 -08 000000099 INF: ======================================
17-02-28 19:42:34.543 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.544 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.545 -08 000000044 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:42:34.545 -08 000000044 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:42:34.605 -08 000000065 INF: FPGA: Recv ZSEL 
17-02-28 19:42:34.605 -08 000000044 INF: FPGA: Xmit ZDACW 36357\n
17-02-28 19:42:34.669 -08 000000056 INF: FPGA: Recv ZDACW 
17-02-28 19:42:34.670 -08 000000044 INF: ===================DitherPostSwathFocusCleanup, FPGA Bypass Data blocking===================
17-02-28 19:42:34.670 -08 000000044 INF: FPGA: Xmit TDIBB 0\n
17-02-28 19:42:34.729 -08 000000058 INF: FPGA: Recv TDIBB
17-02-28 19:42:34.729 -08 000000044 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:42:34.730 -08 000000044 INF: ======================================
17-02-28 19:42:34.732 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:34.732 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.733 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.734 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, HandleImage(Emissive)===================
17-02-28 19:42:34.786 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:34.786 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:34.787 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:34.792 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:35.042 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:35.104 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:35.354 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:35.418 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:35.474 -08 000000042 INF: No fiducial detected. Move X 0.552mm and try AC scan again
17-02-28 19:42:35.474 -08 000000042 INF: TopSurfaceZPositions[] was -0.161391923749651, so used the TopSurfaceZPositions[] (-0.161391923749651) + compensator value (0.0227).
17-02-28 19:42:35.475 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:35.475 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:35.475 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:35.476 -08 000000042 INF: Compensator: Remaining IntoPath
17-02-28 19:42:35.476 -08 000000042 INF: Center of AC image X offset=-0.552
17-02-28 19:42:35.476 -08 000000042 INF: Center of AC image Estimated: X=69.147, Y=71.505
17-02-28 19:42:35.476 -08 000000042 INF: Center of AC image at: X=68.595, Y=71.505
17-02-28 19:42:35.479 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:35.480 -08 000000042 INF: Transformed XStagePosition from 68.59499 mm to 68.5949935913086 mm.
17-02-28 19:42:35.488 -08 000000042 INF: Transformed StartingYStagePosition from 72.764826965332 mm to 72.764826965332 mm.
17-02-28 19:42:35.488 -08 000000042 INF: Transformed StartingYStageITFPosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:42:35.488 -08 000000042 INF: Transformed TriggerYStagePosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:42:35.490 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:35.491 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Populating image tags===================
17-02-28 19:42:35.491 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:35.491 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 6144, channels = Emissive, TDI Z = -138.7 um, section = A_1
17-02-28 19:42:35.491 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:35.492 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:35.493 -08 000000087 INF: ===================Move X,Y===================
17-02-28 19:42:35.493 -08 000000037 INF: ===================Move Z Motor===================
17-02-28 19:42:35.493 -08 000000045 INF: ===================MoveEmissionFilters===================
17-02-28 19:42:35.493 -08 000000037 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:35.493 -08 000000037 INF: ======================================
17-02-28 19:42:35.493 -08 000000087 INF: ===================Move X,Y, Parallel===================
17-02-28 19:42:35.494 -08 000000099 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:35.494 -08 000000055 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:35.494 -08 000000064 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:35.494 -08 000000060 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:35.494 -08 000000051 INF: ===================Move X Motor without settling===================
17-02-28 19:42:35.494 -08 000000076 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:35.495 -08 000000099 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:42:35.495 -08 000000051 INF: X Motor: Xmit PR VM\n
17-02-28 19:42:35.495 -08 000000060 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:35.495 -08 000000076 INF: Y Motor: Moving to 72.7648 mm @25.000 mm/sec, started at 70.1419 mm
17-02-28 19:42:35.495 -08 000000055 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:35.495 -08 000000064 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:35.495 -08 000000076 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:35.495 -08 000000076 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:35.495 -08 000000020 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:42:35.496 -08 000000083 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:42:35.496 -08 000000067 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:42:35.496 -08 000000040 INF: ===================Move Emission Filter 42(sim) to IntoPath===================
17-02-28 19:42:35.496 -08 000000093 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:42:35.496 -08 000000070 INF: ===================Move Emission Filter 22(sim) to IntoPath===================
17-02-28 19:42:35.496 -08 000000027 INF: ===================Move Emission Filter 31(sim) to IntoPath===================
17-02-28 19:42:35.496 -08 000000020 INF: ======================================
17-02-28 19:42:35.496 -08 000000048 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:42:35.496 -08 000000067 INF: ======================================
17-02-28 19:42:35.496 -08 000000070 INF: ======================================
17-02-28 19:42:35.497 -08 000000093 INF: ======================================
17-02-28 19:42:35.497 -08 000000048 INF: ======================================
17-02-28 19:42:35.497 -08 000000040 INF: ======================================
17-02-28 19:42:35.497 -08 000000027 INF: ======================================
17-02-28 19:42:35.498 -08 000000060 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:35.498 -08 000000055 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:35.499 -08 000000083 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:42:35.499 -08 000000083 INF: ======================================
17-02-28 19:42:35.499 -08 000000060 INF: ======================================
17-02-28 19:42:35.499 -08 000000055 INF: ======================================
17-02-28 19:42:35.500 -08 000000064 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:35.500 -08 000000099 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:35.501 -08 000000064 INF: ======================================
17-02-28 19:42:35.502 -08 000000099 INF: ======================================
17-02-28 19:42:35.503 -08 000000045 INF: ======================================
17-02-28 19:42:35.540 -08 000000076 INF: Y Motor: Recv ok\r
17-02-28 19:42:35.540 -08 000000051 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:42:35.540 -08 000000076 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:35.540 -08 000000076 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:35.540 -08 000000051 INF: X Motor: Xmit PR VI\n
17-02-28 19:42:35.605 -08 000000076 INF: Y Motor: Recv ok\r
17-02-28 19:42:35.605 -08 000000051 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:42:35.605 -08 000000051 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:42:35.605 -08 000000076 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:35.605 -08 000000051 INF: X Motor: Moving to 68.5950 mm @15.000 mm/sec, started at 68.0430 mm
17-02-28 19:42:35.605 -08 000000051 INF: X Motor: Xmit MA 3930\n
17-02-28 19:42:35.667 -08 000000051 INF: X Motor: Recv MA 3930\r\n>
17-02-28 19:42:35.667 -08 000000076 INF: Y Motor: Recv v 0\r
17-02-28 19:42:35.667 -08 000000076 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:35.667 -08 000000051 INF: X Motor: WaitUntilStopped 60037
17-02-28 19:42:35.667 -08 000000076 INF: Y Motor: Set target position to 6776483 encoder counts
17-02-28 19:42:35.667 -08 000000076 INF: Y Motor: Xmit s r0xca 6776483\r
17-02-28 19:42:35.668 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:35.728 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:35.729 -08 000000076 INF: Y Motor: Recv ok\r
17-02-28 19:42:35.729 -08 000000076 INF: Y Motor: Start the move command
17-02-28 19:42:35.729 -08 000000076 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:35.791 -08 000000076 INF: Y Motor: Recv ok\r
17-02-28 19:42:35.791 -08 000000076 INF: Y Motor: WaitUntilStopped 60105
17-02-28 19:42:35.791 -08 000000076 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:35.917 -08 000000076 INF: Y Motor: Unshifted Position: 6594395
17-02-28 19:42:35.967 -08 000000076 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:35.978 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:36.041 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:36.041 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:42:36.041 -08 000000018 INF: KloehnPump A (KLOEHNA): Waiting 1000 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-02-28 19:42:36.092 -08 000000076 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:36.104 -08 000000051 INF: X Motor: Xmit PR ER\n
17-02-28 19:42:36.166 -08 000000051 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:42:36.166 -08 000000051 INF: X Motor: Moved to 68.5947 after 498 ms
17-02-28 19:42:36.166 -08 000000051 INF: ======================================
17-02-28 19:42:36.228 -08 000000076 INF: Y Motor: Unshifted Position: 6776485
17-02-28 19:42:36.228 -08 000000076 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:36.228 -08 000000076 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:36.290 -08 000000076 INF: Y Motor: Recv v 0\r
17-02-28 19:42:36.290 -08 000000076 INF: Y Motor: Moved to 72.7649 after 498 ms
17-02-28 19:42:36.290 -08 000000076 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:36.356 -08 000000076 INF: Y Motor: Recv v 4096\r
17-02-28 19:42:36.356 -08 000000076 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:36.356 -08 000000076 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:36.417 -08 000000076 INF: Y Motor: Recv v 0\r
17-02-28 19:42:36.417 -08 000000076 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:36.417 -08 000000076 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:36.477 -08 000000076 INF: Y Motor: Recv v 402653184\r
17-02-28 19:42:36.477 -08 000000076 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:42:36.477 -08 000000076 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:36.477 -08 000000076 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:36.542 -08 000000076 INF: Y Motor: Recv v 0\r
17-02-28 19:42:36.542 -08 000000076 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:36.542 -08 000000076 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:36.542 -08 000000076 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:36.604 -08 000000076 INF: Y Motor: Recv ok\r
17-02-28 19:42:36.604 -08 000000076 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:36.604 -08 000000076 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:36.666 -08 000000076 INF: Y Motor: Recv ok\r
17-02-28 19:42:36.666 -08 000000076 INF: ======================================
17-02-28 19:42:36.667 -08 000000087 INF: ===================Move X,Y===================
17-02-28 19:42:36.669 -08 000000087 INF: ======================================
17-02-28 19:42:36.670 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:36.671 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:36.671 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:42:36.671 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:42:36.728 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:42:36.728 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:42:36.788 -08 000000101 INF: FPGA: Recv ZFREQCL
17-02-28 19:42:36.788 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Reporting Motor Positions===================
17-02-28 19:42:36.788 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:36.789 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:36.851 -08 000000040 INF: FPGA: Recv TDIYERD 7276484
17-02-28 19:42:36.851 -08 000000042 INF: Before scan, Y encoder from FPGA = 7276484 counts (72.765 mm)
17-02-28 19:42:36.851 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:36.852 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:36.852 -08 000000044 INF: ===================TDI Scan Setup===================
17-02-28 19:42:36.852 -08 000000039 INF: ===================Set YMotor gains for scans===================
17-02-28 19:42:36.853 -08 000000039 INF: ======================================
17-02-28 19:42:36.853 -08 000000044 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:42:36.853 -08 000000044 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:42:36.912 -08 000000020 INF: FPGA: Recv ZSEL 
17-02-28 19:42:36.912 -08 000000044 INF: FPGA: Xmit ZDACW 36357\n
17-02-28 19:42:36.978 -08 000000094 INF: FPGA: Recv ZDACW 
17-02-28 19:42:36.978 -08 000000044 INF: ===================Initializing FPGA for Dither Focus===================
17-02-28 19:42:36.978 -08 000000044 INF: DEBUG: TDIScan after moving to initial positions: Z = -0.139 mm, Active = True
17-02-28 19:42:36.978 -08 000000044 INF: FPGA: Xmit ZSEL 1\n
17-02-28 19:42:37.037 -08 000000010 INF: FPGA: Recv ZSEL 
17-02-28 19:42:37.037 -08 000000044 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:42:37.037 -08 000000044 INF: ===================TDI Scan Setup===================
17-02-28 19:42:37.039 -08 000000044 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:42:37.039 -08 000000044 INF: ===================TDI Scan Setup===================
17-02-28 19:42:37.041 -08 000000044 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:37.041 -08 000000044 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:42:37.042 -08 000000044 INF: FPGA: Xmit TDIYPOS 7256483\n
17-02-28 19:42:37.099 -08 000000025 INF: FPGA: Recv TDIYPOS
17-02-28 19:42:37.099 -08 000000044 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:37.101 -08 000000044 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:42:37.101 -08 000000044 INF: FPGA: Xmit TDIYARM2 6144 1 1\n
17-02-28 19:42:37.141 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1IR\r
17-02-28 19:42:37.164 -08 000000099 INF: FPGA: Recv TDIYARM2
17-02-28 19:42:37.164 -08 000000044 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:37.165 -08 000000044 INF: ===================TDI Scan Setup===================
17-02-28 19:42:37.167 -08 000000044 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:42:37.167 -08 000000044 INF: ===================TDI Scan Setup===================
17-02-28 19:42:37.169 -08 000000044 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:37.170 -08 000000044 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:37.170 -08 000000044 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:42:37.227 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:37.327 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:37.413 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:42:37.568 -08 000000044 INF: Camera #0 AttachBuffer (imageDataPtr = 70077593520 imgPtr = 70077593520 , attachBufferNumFrames = 24 , frameSize = 1638400,
17-02-28 19:42:37.568 -08 000000044 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 6144
17-02-28 19:42:37.568 -08 000000044 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:42:37.583 -08 000000044 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:37.585 -08 000000044 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:37.586 -08 000000044 INF: ===================TDI Scan Setup===================
17-02-28 19:42:37.587 -08 000000044 INF: ======================================
17-02-28 19:42:37.588 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:37.589 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:37.589 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:37.590 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:37.590 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:37.591 -08 000000056 INF: ===================Move Excitation Filter 2 (Emissive) to 'OD1.0'===================
17-02-28 19:42:37.591 -08 000000094 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:42:37.591 -08 000000056 INF: Excitation Filter 2: Moving 'Emissive' to index 3 (OD1.0)
17-02-28 19:42:37.591 -08 000000056 INF: Excitation Filter 2: Moving to 135.0000 degrees
17-02-28 19:42:37.592 -08 000000056 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:42:37.592 -08 000000094 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:42:37.592 -08 000000094 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:42:37.592 -08 000000094 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0866 ms
17-02-28 19:42:37.592 -08 000000056 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:42:37.592 -08 000000094 INF: ======================================
17-02-28 19:42:37.663 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:42:37.724 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:42:37.724 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:37.724 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Closing shutoff valve===================
17-02-28 19:42:37.973 -08 000000045 INF: FPGA: Recv EX2MV
17-02-28 19:42:37.973 -08 000000056 INF: Excitation Filter 2: Moved 107 steps in 381.2914 ms
17-02-28 19:42:37.973 -08 000000056 INF: Excitation Filter 2: Moved to 135.2810 degrees (target was 135.0000) in 381.4017 ms
17-02-28 19:42:37.973 -08 000000056 INF: Excitation Filter 2: Moved 'Emissive' to index 3 (OD1.0) in 381.472 ms
17-02-28 19:42:37.973 -08 000000056 INF: ======================================
17-02-28 19:42:37.974 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:37.976 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:37.977 -08 000000099 INF: ===================Camera TDI===================
17-02-28 19:42:37.977 -08 000000084 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:37.977 -08 000000070 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:37.977 -08 000000070 INF: Y Motor: Moving to 70.1419 mm @1.500 mm/sec, started at 72.7649 mm
17-02-28 19:42:37.978 -08 000000099 INF: ===================Camera TDI, Parallel===================
17-02-28 19:42:37.978 -08 000000084 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:42:37.978 -08 000000070 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:37.978 -08 000000070 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:37.978 -08 000000084 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:42:37.979 -08 000000051 INF: ===================Camera TDI===================
17-02-28 19:42:37.979 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:37.980 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:38.037 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:42:38.037 -08 000000070 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:38.037 -08 000000070 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:38.102 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:42:38.102 -08 000000070 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:38.130 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:38.130 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:38.166 -08 000000070 INF: Y Motor: Recv v 0\r
17-02-28 19:42:38.166 -08 000000070 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:38.166 -08 000000070 INF: Y Motor: Set target position to 6514189 encoder counts
17-02-28 19:42:38.166 -08 000000070 INF: Y Motor: Xmit s r0xca 6514189\r
17-02-28 19:42:38.226 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:42:38.226 -08 000000070 INF: Y Motor: Start the move command
17-02-28 19:42:38.226 -08 000000070 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:38.280 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:38.280 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:38.288 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:42:38.288 -08 000000070 INF: Y Motor: WaitUntilStopped 61749
17-02-28 19:42:38.288 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:38.412 -08 000000070 INF: Y Motor: Unshifted Position: 6758463
17-02-28 19:42:38.430 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:38.430 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:38.462 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:38.535 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:38.535 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:38.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:38.536 -08 000000018 INF: WaitCommand(40000) start
17-02-28 19:42:38.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 40 of 40 seconds left===================
17-02-28 19:42:38.580 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:42:38.580 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:42:38.580 -08 000000051 INF: ===================Camera #0 Frame #1===================
17-02-28 19:42:38.590 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:38.726 -08 000000070 INF: Y Motor: Unshifted Position: 6711754
17-02-28 19:42:38.733 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:42:38.733 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:42:38.733 -08 000000051 INF: ===================Camera #0 Frame #3===================
17-02-28 19:42:38.776 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:38.890 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:42:38.890 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:42:38.890 -08 000000051 INF: ===================Camera #0 Frame #4===================
17-02-28 19:42:38.900 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:39.038 -08 000000070 INF: Y Motor: Unshifted Position: 6664960
17-02-28 19:42:39.043 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:42:39.043 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:42:39.043 -08 000000051 INF: ===================Camera #0 Frame #5===================
17-02-28 19:42:39.088 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:39.196 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:42:39.196 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:42:39.196 -08 000000051 INF: ===================Camera #0 Frame #6===================
17-02-28 19:42:39.212 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:39.348 -08 000000070 INF: Y Motor: Unshifted Position: 6618007
17-02-28 19:42:39.349 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 7, frameCount = 8.
17-02-28 19:42:39.349 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 8
17-02-28 19:42:39.349 -08 000000051 INF: ===================Camera #0 Frame #8===================
17-02-28 19:42:39.398 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:39.505 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 8, frameCount = 9.
17-02-28 19:42:39.505 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 9
17-02-28 19:42:39.505 -08 000000051 INF: ===================Camera #0 Frame #9===================
17-02-28 19:42:39.522 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:39.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:39.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 39 of 40 seconds left===================
17-02-28 19:42:39.658 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 9, frameCount = 10.
17-02-28 19:42:39.658 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 10
17-02-28 19:42:39.658 -08 000000051 INF: ===================Camera #0 Frame #10===================
17-02-28 19:42:39.662 -08 000000070 INF: Y Motor: Unshifted Position: 6571012
17-02-28 19:42:39.712 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:39.811 -08 000000051 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 11, frameCount = 12.
17-02-28 19:42:39.811 -08 000000051 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 12
17-02-28 19:42:39.811 -08 000000051 INF: ===================Camera #0 Frame #12===================
17-02-28 19:42:39.817 -08 000000051 INF: Camera complete - got 12 frames, processed 12 frames, expected 12 frames.
17-02-28 19:42:39.818 -08 000000051 INF: ===================CameraTDI Cleanup===================
17-02-28 19:42:39.835 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:39.845 -08 000000051 INF: Camera #0 ReleaseBuffer
17-02-28 19:42:39.845 -08 000000037 INF: FPGA: Recv TDIYWAIT
17-02-28 19:42:39.845 -08 000000051 INF: ===================Camera TDI===================
17-02-28 19:42:39.845 -08 000000084 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:39.847 -08 000000051 INF: ======================================
17-02-28 19:42:39.847 -08 000000084 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:42:39.848 -08 000000055 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:42:39.848 -08 000000055 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:42:39.848 -08 000000055 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:42:39.848 -08 000000055 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:42:39.848 -08 000000055 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:42:39.848 -08 000000099 INF: ===================Camera TDI===================
17-02-28 19:42:39.849 -08 000000099 INF: ======================================
17-02-28 19:42:39.974 -08 000000070 INF: Y Motor: Unshifted Position: 6524463
17-02-28 19:42:40.024 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:40.160 -08 000000070 INF: Y Motor: Unshifted Position: 6514188
17-02-28 19:42:40.160 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:40.160 -08 000000070 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:40.220 -08 000000035 INF: FPGA: Recv EX2MV
17-02-28 19:42:40.220 -08 000000055 INF: Excitation Filter 2: Moved -107 steps in 371.7907 ms
17-02-28 19:42:40.220 -08 000000055 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 371.8888 ms
17-02-28 19:42:40.220 -08 000000055 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 371.9606 ms
17-02-28 19:42:40.220 -08 000000055 INF: ======================================
17-02-28 19:42:40.222 -08 000000070 INF: Y Motor: Recv v 0\r
17-02-28 19:42:40.222 -08 000000070 INF: Y Motor: Moved to 70.1419 after 1934 ms
17-02-28 19:42:40.222 -08 000000070 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:40.222 -08 000000084 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:40.223 -08 000000084 INF: ======================================
17-02-28 19:42:40.285 -08 000000070 INF: Y Motor: Recv v 4097\r
17-02-28 19:42:40.285 -08 000000070 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:40.285 -08 000000070 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:40.346 -08 000000070 INF: Y Motor: Recv v 0\r
17-02-28 19:42:40.346 -08 000000070 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:40.346 -08 000000070 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:40.408 -08 000000070 INF: Y Motor: Recv v 134217728\r
17-02-28 19:42:40.408 -08 000000070 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:42:40.408 -08 000000070 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:40.408 -08 000000070 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:40.473 -08 000000070 INF: Y Motor: Recv v 0\r
17-02-28 19:42:40.473 -08 000000070 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:40.473 -08 000000070 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:40.473 -08 000000070 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:40.535 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:42:40.535 -08 000000070 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:40.535 -08 000000070 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:40.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:40.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 38 of 40 seconds left===================
17-02-28 19:42:40.598 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:42:40.598 -08 000000070 INF: ======================================
17-02-28 19:42:40.599 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:40.600 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:40.601 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:40.601 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:42:40.657 -08 000000074 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:42:40.657 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:40.719 -08 000000067 INF: FPGA: Recv TDIYERD 7014190
17-02-28 19:42:40.719 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:42:40.781 -08 000000044 INF: FPGA: Recv ZADCR 36264
17-02-28 19:42:40.781 -08 000000042 INF: At scan end Y pos = 70.142 and Z pos = -0.139. Y moved -2.423 mm
17-02-28 19:42:40.781 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:42:40.843 -08 000000050 INF: FPGA: Recv TDIPULSES 6145
17-02-28 19:42:40.843 -08 000000042 INF: The FPGA sent 6144 triggers to the camera ; expected 6144
17-02-28 19:42:40.843 -08 000000042 INF: TDIScan finished after 5362.6839 ms
17-02-28 19:42:40.843 -08 000000042 INF: Image[0]: Y should trigger at 72.565 mm, 2nd row was at 72.552 mm (error = -0.013 mm)
17-02-28 19:42:40.844 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:40.844 -08 000000042 INF: Z jump check: There were 0/6144 lines (retry if > 900) at which Delta Z >= 10 um; span = 1000 lines. Largest delta = 0.000 um
17-02-28 19:42:40.845 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:40.845 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:42:40.906 -08 000000101 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:42:40.907 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:40.907 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:40.908 -08 000000051 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:42:40.908 -08 000000074 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:42:40.908 -08 000000076 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:42:40.908 -08 000000051 INF: ======================================
17-02-28 19:42:40.909 -08 000000074 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:42:40.909 -08 000000076 INF: ======================================
17-02-28 19:42:40.909 -08 000000074 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:42:40.970 -08 000000074 INF: Y Motor: Recv ok\r
17-02-28 19:42:40.970 -08 000000074 INF: ======================================
17-02-28 19:42:40.971 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:40.973 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:40.973 -08 000000060 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:42:40.973 -08 000000060 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:42:41.030 -08 000000101 INF: FPGA: Recv ZSEL 
17-02-28 19:42:41.030 -08 000000060 INF: FPGA: Xmit ZDACW 36357\n
17-02-28 19:42:41.095 -08 000000035 INF: FPGA: Recv ZDACW 
17-02-28 19:42:41.096 -08 000000060 INF: ===================DitherPostSwathFocusCleanup, FPGA Bypass Data blocking===================
17-02-28 19:42:41.096 -08 000000060 INF: FPGA: Xmit TDIBB 0\n
17-02-28 19:42:41.157 -08 000000086 INF: FPGA: Recv TDIBB
17-02-28 19:42:41.157 -08 000000060 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:42:41.158 -08 000000060 INF: ======================================
17-02-28 19:42:41.160 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:41.161 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:41.162 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, HandleImage(Emissive)===================
17-02-28 19:42:41.216 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:41.217 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:41.217 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:41.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:41.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 37 of 40 seconds left===================
17-02-28 19:42:41.897 -08 000000042 INF: No fiducial detected. Move X 0.552mm and try AC scan again
17-02-28 19:42:41.897 -08 000000042 INF: TopSurfaceZPositions[] was -0.161391923749651, so used the TopSurfaceZPositions[] (-0.161391923749651) + compensator value (0.0227).
17-02-28 19:42:41.898 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:41.898 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:41.898 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:41.899 -08 000000042 INF: Compensator: Remaining IntoPath
17-02-28 19:42:41.899 -08 000000042 INF: Center of AC image X offset=0.000
17-02-28 19:42:41.899 -08 000000042 INF: Center of AC image Estimated: X=69.147, Y=71.505
17-02-28 19:42:41.899 -08 000000042 INF: Center of AC image at: X=69.147, Y=71.505
17-02-28 19:42:41.902 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:41.903 -08 000000042 INF: Transformed XStagePosition from 69.147 mm to 69.1469955444336 mm.
17-02-28 19:42:41.911 -08 000000042 INF: Transformed StartingYStagePosition from 72.764826965332 mm to 72.764826965332 mm.
17-02-28 19:42:41.911 -08 000000042 INF: Transformed StartingYStageITFPosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:42:41.911 -08 000000042 INF: Transformed TriggerYStagePosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:42:41.913 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:41.913 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Populating image tags===================
17-02-28 19:42:41.914 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:41.914 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 6144, channels = Emissive, TDI Z = -138.7 um, section = A_1
17-02-28 19:42:41.914 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:41.915 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:41.915 -08 000000009 INF: ===================MoveEmissionFilters===================
17-02-28 19:42:41.916 -08 000000044 INF: ===================Move Z Motor===================
17-02-28 19:42:41.916 -08 000000046 INF: ===================Move X,Y===================
17-02-28 19:42:41.916 -08 000000044 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:41.916 -08 000000044 INF: ======================================
17-02-28 19:42:41.916 -08 000000035 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:41.916 -08 000000077 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:41.916 -08 000000065 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:41.916 -08 000000093 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:41.916 -08 000000046 INF: ===================Move X,Y, Parallel===================
17-02-28 19:42:41.917 -08 000000035 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:42:41.917 -08 000000077 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:41.917 -08 000000093 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:41.917 -08 000000053 INF: ===================Move X Motor without settling===================
17-02-28 19:42:41.918 -08 000000065 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:41.918 -08 000000053 INF: X Motor: Xmit PR VM\n
17-02-28 19:42:41.918 -08 000000047 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:41.918 -08 000000047 INF: Y Motor: Moving to 72.7648 mm @25.000 mm/sec, started at 70.1419 mm
17-02-28 19:42:41.918 -08 000000044 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:42:41.918 -08 000000094 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:42:41.918 -08 000000020 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:42:41.918 -08 000000056 INF: ===================Move Emission Filter 22(sim) to IntoPath===================
17-02-28 19:42:41.918 -08 000000054 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:42:41.918 -08 000000084 INF: ===================Move Emission Filter 42(sim) to IntoPath===================
17-02-28 19:42:41.918 -08 000000094 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:42:41.918 -08 000000047 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:41.918 -08 000000047 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:41.919 -08 000000048 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:42:41.919 -08 000000099 INF: ===================Move Emission Filter 31(sim) to IntoPath===================
17-02-28 19:42:41.919 -08 000000084 INF: ======================================
17-02-28 19:42:41.919 -08 000000048 INF: ======================================
17-02-28 19:42:41.919 -08 000000099 INF: ======================================
17-02-28 19:42:41.920 -08 000000020 INF: ======================================
17-02-28 19:42:41.920 -08 000000054 INF: ======================================
17-02-28 19:42:41.921 -08 000000065 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:41.921 -08 000000093 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:41.921 -08 000000044 INF: ======================================
17-02-28 19:42:41.921 -08 000000056 INF: ======================================
17-02-28 19:42:41.922 -08 000000094 INF: ======================================
17-02-28 19:42:41.922 -08 000000065 INF: ======================================
17-02-28 19:42:41.923 -08 000000093 INF: ======================================
17-02-28 19:42:41.923 -08 000000035 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:41.923 -08 000000077 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:41.924 -08 000000035 INF: ======================================
17-02-28 19:42:41.924 -08 000000077 INF: ======================================
17-02-28 19:42:41.925 -08 000000009 INF: ======================================
17-02-28 19:42:41.969 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:41.969 -08 000000047 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:41.969 -08 000000047 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:41.969 -08 000000053 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:42:41.969 -08 000000053 INF: X Motor: Xmit PR VI\n
17-02-28 19:42:42.031 -08 000000053 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:42:42.031 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:42.031 -08 000000053 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:42:42.031 -08 000000047 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:42.031 -08 000000053 INF: X Motor: Moving to 69.1470 mm @15.000 mm/sec, started at 68.5947 mm
17-02-28 19:42:42.031 -08 000000053 INF: X Motor: Xmit MA 4156\n
17-02-28 19:42:42.093 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:42:42.093 -08 000000047 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:42.093 -08 000000053 INF: X Motor: Recv MA 4156\r\n>
17-02-28 19:42:42.093 -08 000000047 INF: Y Motor: Set target position to 6776483 encoder counts
17-02-28 19:42:42.093 -08 000000047 INF: Y Motor: Xmit s r0xca 6776483\r
17-02-28 19:42:42.093 -08 000000053 INF: X Motor: WaitUntilStopped 60037
17-02-28 19:42:42.158 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:42.158 -08 000000047 INF: Y Motor: Start the move command
17-02-28 19:42:42.158 -08 000000047 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:42.220 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:42.220 -08 000000047 INF: Y Motor: WaitUntilStopped 60105
17-02-28 19:42:42.220 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:42.344 -08 000000047 INF: Y Motor: Unshifted Position: 6595649
17-02-28 19:42:42.394 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:42.518 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:42.530 -08 000000053 INF: X Motor: Xmit PR ER\n
17-02-28 19:42:42.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:42.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 36 of 40 seconds left===================
17-02-28 19:42:42.592 -08 000000053 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:42:42.592 -08 000000053 INF: X Motor: Moved to 69.1465 after 498 ms
17-02-28 19:42:42.592 -08 000000053 INF: ======================================
17-02-28 19:42:42.657 -08 000000047 INF: Y Motor: Unshifted Position: 6776484
17-02-28 19:42:42.657 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:42.657 -08 000000047 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:42.719 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:42:42.719 -08 000000047 INF: Y Motor: Moved to 72.7648 after 499 ms
17-02-28 19:42:42.719 -08 000000047 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:42.781 -08 000000047 INF: Y Motor: Recv v 4096\r
17-02-28 19:42:42.781 -08 000000047 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:42.781 -08 000000047 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:42.843 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:42:42.843 -08 000000047 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:42.843 -08 000000047 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:42.905 -08 000000047 INF: Y Motor: Recv v 402653184\r
17-02-28 19:42:42.905 -08 000000047 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:42:42.905 -08 000000047 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:42.905 -08 000000047 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:42.967 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:42:42.967 -08 000000047 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:42.967 -08 000000047 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:42.967 -08 000000047 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:43.029 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:43.029 -08 000000047 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:43.029 -08 000000047 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:43.091 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:42:43.091 -08 000000047 INF: ======================================
17-02-28 19:42:43.092 -08 000000046 INF: ===================Move X,Y===================
17-02-28 19:42:43.094 -08 000000046 INF: ======================================
17-02-28 19:42:43.095 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:43.096 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:43.096 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:42:43.096 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:42:43.158 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:42:43.158 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:42:43.216 -08 000000047 INF: FPGA: Recv ZFREQCL
17-02-28 19:42:43.216 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Reporting Motor Positions===================
17-02-28 19:42:43.216 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:43.216 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:43.280 -08 000000050 INF: FPGA: Recv TDIYERD 7276484
17-02-28 19:42:43.280 -08 000000042 INF: Before scan, Y encoder from FPGA = 7276484 counts (72.765 mm)
17-02-28 19:42:43.281 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:43.281 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:43.282 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:43.282 -08 000000070 INF: ===================Set YMotor gains for scans===================
17-02-28 19:42:43.283 -08 000000070 INF: ======================================
17-02-28 19:42:43.283 -08 000000088 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:42:43.283 -08 000000088 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:42:43.340 -08 000000065 INF: FPGA: Recv ZSEL 
17-02-28 19:42:43.340 -08 000000088 INF: FPGA: Xmit ZDACW 36357\n
17-02-28 19:42:43.402 -08 000000058 INF: FPGA: Recv ZDACW 
17-02-28 19:42:43.402 -08 000000088 INF: ===================Initializing FPGA for Dither Focus===================
17-02-28 19:42:43.402 -08 000000088 INF: DEBUG: TDIScan after moving to initial positions: Z = -0.139 mm, Active = True
17-02-28 19:42:43.402 -08 000000088 INF: FPGA: Xmit ZSEL 1\n
17-02-28 19:42:43.464 -08 000000044 INF: FPGA: Recv ZSEL 
17-02-28 19:42:43.464 -08 000000088 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:42:43.464 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:43.466 -08 000000088 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:42:43.466 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:43.468 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:43.468 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:42:43.469 -08 000000088 INF: FPGA: Xmit TDIYPOS 7256483\n
17-02-28 19:42:43.526 -08 000000048 INF: FPGA: Recv TDIYPOS
17-02-28 19:42:43.526 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:43.528 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:42:43.528 -08 000000088 INF: FPGA: Xmit TDIYARM2 6144 1 1\n
17-02-28 19:42:43.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:43.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 35 of 40 seconds left===================
17-02-28 19:42:43.591 -08 000000104 INF: FPGA: Recv TDIYARM2
17-02-28 19:42:43.591 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:43.592 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:43.594 -08 000000088 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:42:43.594 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:43.596 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:43.597 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:43.597 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:42:43.995 -08 000000088 INF: Camera #0 AttachBuffer (imageDataPtr = 70077593520 imgPtr = 70077593520 , attachBufferNumFrames = 24 , frameSize = 1638400,
17-02-28 19:42:43.995 -08 000000088 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 6144
17-02-28 19:42:43.995 -08 000000088 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:42:44.010 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:44.011 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:44.013 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:44.014 -08 000000088 INF: ======================================
17-02-28 19:42:44.015 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:44.016 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:44.016 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:44.017 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:44.017 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:44.018 -08 000000040 INF: ===================Move Excitation Filter 2 (Emissive) to 'OD1.0'===================
17-02-28 19:42:44.018 -08 000000070 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:42:44.018 -08 000000040 INF: Excitation Filter 2: Moving 'Emissive' to index 3 (OD1.0)
17-02-28 19:42:44.019 -08 000000040 INF: Excitation Filter 2: Moving to 135.0000 degrees
17-02-28 19:42:44.019 -08 000000040 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:42:44.019 -08 000000070 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:42:44.019 -08 000000070 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:42:44.019 -08 000000070 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0715 ms
17-02-28 19:42:44.019 -08 000000040 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:42:44.019 -08 000000070 INF: ======================================
17-02-28 19:42:44.402 -08 000000053 INF: FPGA: Recv EX2MV
17-02-28 19:42:44.402 -08 000000040 INF: Excitation Filter 2: Moved 107 steps in 383.2017 ms
17-02-28 19:42:44.402 -08 000000040 INF: Excitation Filter 2: Moved to 135.2810 degrees (target was 135.0000) in 383.3022 ms
17-02-28 19:42:44.402 -08 000000040 INF: Excitation Filter 2: Moved 'Emissive' to index 3 (OD1.0) in 383.3778 ms
17-02-28 19:42:44.402 -08 000000040 INF: ======================================
17-02-28 19:42:44.403 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:44.405 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:44.406 -08 000000070 INF: ===================Camera TDI===================
17-02-28 19:42:44.406 -08 000000079 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:44.406 -08 000000050 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:44.406 -08 000000050 INF: Y Motor: Moving to 70.1419 mm @1.500 mm/sec, started at 72.7648 mm
17-02-28 19:42:44.406 -08 000000050 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:44.406 -08 000000050 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:44.406 -08 000000070 INF: ===================Camera TDI, Parallel===================
17-02-28 19:42:44.406 -08 000000079 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:42:44.407 -08 000000079 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:42:44.407 -08 000000044 INF: ===================Camera TDI===================
17-02-28 19:42:44.408 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:44.408 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:44.466 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:42:44.466 -08 000000050 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:44.466 -08 000000050 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:44.528 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:42:44.528 -08 000000050 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:44.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:44.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 34 of 40 seconds left===================
17-02-28 19:42:44.558 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:44.558 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:44.590 -08 000000050 INF: Y Motor: Recv v 0\r
17-02-28 19:42:44.590 -08 000000050 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:44.590 -08 000000050 INF: Y Motor: Set target position to 6514189 encoder counts
17-02-28 19:42:44.590 -08 000000050 INF: Y Motor: Xmit s r0xca 6514189\r
17-02-28 19:42:44.652 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:42:44.652 -08 000000050 INF: Y Motor: Start the move command
17-02-28 19:42:44.652 -08 000000050 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:44.708 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:44.708 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:44.714 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:42:44.714 -08 000000050 INF: Y Motor: WaitUntilStopped 61749
17-02-28 19:42:44.714 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:44.841 -08 000000050 INF: Y Motor: Unshifted Position: 6758460
17-02-28 19:42:44.858 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:44.858 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:44.891 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:45.008 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:42:45.008 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:42:45.008 -08 000000044 INF: ===================Camera #0 Frame #1===================
17-02-28 19:42:45.013 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:45.152 -08 000000050 INF: Y Motor: Unshifted Position: 6711356
17-02-28 19:42:45.161 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:42:45.161 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:42:45.161 -08 000000044 INF: ===================Camera #0 Frame #3===================
17-02-28 19:42:45.202 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:45.318 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:42:45.318 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:42:45.318 -08 000000044 INF: ===================Camera #0 Frame #4===================
17-02-28 19:42:45.326 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:45.464 -08 000000050 INF: Y Motor: Unshifted Position: 6664509
17-02-28 19:42:45.472 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:42:45.472 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:42:45.472 -08 000000044 INF: ===================Camera #0 Frame #5===================
17-02-28 19:42:45.514 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:45.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:45.536 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 33 of 40 seconds left===================
17-02-28 19:42:45.625 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:42:45.625 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:42:45.625 -08 000000044 INF: ===================Camera #0 Frame #6===================
17-02-28 19:42:45.638 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:45.777 -08 000000050 INF: Y Motor: Unshifted Position: 6617704
17-02-28 19:42:45.778 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 7, frameCount = 8.
17-02-28 19:42:45.778 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 8
17-02-28 19:42:45.778 -08 000000044 INF: ===================Camera #0 Frame #8===================
17-02-28 19:42:45.827 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:45.935 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 8, frameCount = 9.
17-02-28 19:42:45.935 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 9
17-02-28 19:42:45.935 -08 000000044 INF: ===================Camera #0 Frame #9===================
17-02-28 19:42:45.951 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:46.089 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 9, frameCount = 10.
17-02-28 19:42:46.089 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 10
17-02-28 19:42:46.089 -08 000000044 INF: ===================Camera #0 Frame #10===================
17-02-28 19:42:46.090 -08 000000050 INF: Y Motor: Unshifted Position: 6571160
17-02-28 19:42:46.140 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:46.242 -08 000000044 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 11, frameCount = 12.
17-02-28 19:42:46.242 -08 000000044 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 12
17-02-28 19:42:46.242 -08 000000044 INF: ===================Camera #0 Frame #12===================
17-02-28 19:42:46.249 -08 000000044 INF: Camera complete - got 12 frames, processed 12 frames, expected 12 frames.
17-02-28 19:42:46.250 -08 000000044 INF: ===================CameraTDI Cleanup===================
17-02-28 19:42:46.264 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:46.274 -08 000000037 INF: FPGA: Recv TDIYWAIT
17-02-28 19:42:46.274 -08 000000079 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:46.276 -08 000000079 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:42:46.277 -08 000000044 INF: Camera #0 ReleaseBuffer
17-02-28 19:42:46.277 -08 000000044 INF: ===================Camera TDI===================
17-02-28 19:42:46.277 -08 000000077 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:42:46.277 -08 000000077 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:42:46.277 -08 000000077 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:42:46.277 -08 000000077 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:42:46.277 -08 000000077 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:42:46.279 -08 000000044 INF: ======================================
17-02-28 19:42:46.280 -08 000000070 INF: ===================Camera TDI===================
17-02-28 19:42:46.282 -08 000000070 INF: ======================================
17-02-28 19:42:46.400 -08 000000050 INF: Y Motor: Unshifted Position: 6524209
17-02-28 19:42:46.450 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:46.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:46.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 32 of 40 seconds left===================
17-02-28 19:42:46.589 -08 000000050 INF: Y Motor: Unshifted Position: 6514189
17-02-28 19:42:46.589 -08 000000050 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:46.589 -08 000000050 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:46.649 -08 000000035 INF: FPGA: Recv EX2MV
17-02-28 19:42:46.649 -08 000000077 INF: Excitation Filter 2: Moved -107 steps in 371.5154 ms
17-02-28 19:42:46.649 -08 000000077 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 371.6333 ms
17-02-28 19:42:46.649 -08 000000077 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 371.7386 ms
17-02-28 19:42:46.649 -08 000000077 INF: ======================================
17-02-28 19:42:46.651 -08 000000050 INF: Y Motor: Recv v 0\r
17-02-28 19:42:46.651 -08 000000050 INF: Y Motor: Moved to 70.1419 after 1935 ms
17-02-28 19:42:46.651 -08 000000050 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:46.651 -08 000000079 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:46.652 -08 000000079 INF: ======================================
17-02-28 19:42:46.713 -08 000000050 INF: Y Motor: Recv v 4097\r
17-02-28 19:42:46.713 -08 000000050 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:46.713 -08 000000050 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:46.775 -08 000000050 INF: Y Motor: Recv v 0\r
17-02-28 19:42:46.775 -08 000000050 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:46.775 -08 000000050 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:46.837 -08 000000050 INF: Y Motor: Recv v 134217728\r
17-02-28 19:42:46.837 -08 000000050 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:42:46.837 -08 000000050 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:46.837 -08 000000050 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:46.899 -08 000000050 INF: Y Motor: Recv v 0\r
17-02-28 19:42:46.899 -08 000000050 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:46.899 -08 000000050 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:46.899 -08 000000050 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:46.961 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:42:46.961 -08 000000050 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:46.961 -08 000000050 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:47.023 -08 000000050 INF: Y Motor: Recv ok\r
17-02-28 19:42:47.023 -08 000000050 INF: ======================================
17-02-28 19:42:47.024 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:47.025 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:47.026 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.026 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:42:47.086 -08 000000093 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:42:47.086 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:47.148 -08 000000044 INF: FPGA: Recv TDIYERD 7014190
17-02-28 19:42:47.148 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:42:47.210 -08 000000010 INF: FPGA: Recv ZADCR 36276
17-02-28 19:42:47.210 -08 000000042 INF: At scan end Y pos = 70.142 and Z pos = -0.139. Y moved -2.423 mm
17-02-28 19:42:47.210 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:42:47.273 -08 000000056 INF: FPGA: Recv TDIPULSES 6145
17-02-28 19:42:47.273 -08 000000042 INF: The FPGA sent 6144 triggers to the camera ; expected 6144
17-02-28 19:42:47.273 -08 000000042 INF: TDIScan finished after 5369.4839 ms
17-02-28 19:42:47.273 -08 000000042 INF: Image[0]: Y should trigger at 72.565 mm, 2nd row was at 72.552 mm (error = -0.013 mm)
17-02-28 19:42:47.274 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.274 -08 000000042 INF: Z jump check: There were 0/6144 lines (retry if > 900) at which Delta Z >= 10 um; span = 1000 lines. Largest delta = 0.000 um
17-02-28 19:42:47.274 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.275 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:42:47.334 -08 000000054 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:42:47.334 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.335 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.336 -08 000000046 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:42:47.336 -08 000000063 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:42:47.336 -08 000000044 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:42:47.336 -08 000000063 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:42:47.336 -08 000000063 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:42:47.336 -08 000000046 INF: ======================================
17-02-28 19:42:47.337 -08 000000044 INF: ======================================
17-02-28 19:42:47.398 -08 000000063 INF: Y Motor: Recv ok\r
17-02-28 19:42:47.398 -08 000000063 INF: ======================================
17-02-28 19:42:47.399 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.401 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.401 -08 000000067 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:42:47.401 -08 000000067 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:42:47.458 -08 000000070 INF: FPGA: Recv ZSEL 
17-02-28 19:42:47.458 -08 000000067 INF: FPGA: Xmit ZDACW 36357\n
17-02-28 19:42:47.523 -08 000000050 INF: FPGA: Recv ZDACW 
17-02-28 19:42:47.523 -08 000000067 INF: ===================DitherPostSwathFocusCleanup, FPGA Bypass Data blocking===================
17-02-28 19:42:47.524 -08 000000067 INF: FPGA: Xmit TDIBB 0\n
17-02-28 19:42:47.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:47.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 31 of 40 seconds left===================
17-02-28 19:42:47.585 -08 000000083 INF: FPGA: Recv TDIBB
17-02-28 19:42:47.585 -08 000000067 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:42:47.586 -08 000000067 INF: ======================================
17-02-28 19:42:47.588 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.589 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.590 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, HandleImage(Emissive)===================
17-02-28 19:42:47.643 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:47.643 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:47.644 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:48.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:48.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 30 of 40 seconds left===================
17-02-28 19:42:49.125 -08 000000042 INF: Top surface alignment transform was calculated to be: 1.000 0.000 0.000 
0.000 1.000 0.000 
0.039 -0.017 1.000 

17-02-28 19:42:49.125 -08 000000042 INF: Found auto-center fiducial(s) for Lane: 1 Surface: Top at inlet (69.225 mm,22.178 mm) and/or outlet (6.07 mm, 22.178 mm).
17-02-28 19:42:49.125 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:49.126 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:49.127 -08 000000042 INF: Compensator: Moving OutOfPath
17-02-28 19:42:49.127 -08 000000042 INF: FPGA: Xmit MIOCOMPR\n
17-02-28 19:42:49.517 -08 000000076 INF: FPGA: Recv MIOCOMPR
17-02-28 19:42:49.517 -08 000000042 INF: Compensator: Moved OutOfPath in 390 ms
17-02-28 19:42:49.518 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:49.518 -08 000000042 INF: Compensator: Remaining OutOfPath
17-02-28 19:42:49.521 -08 000000042 INF: Transformed XStagePosition from 69.18564 mm to 69.1856384277344 mm.
17-02-28 19:42:49.530 -08 000000042 INF: Transformed StartingYStagePosition from 40.4930030822754 mm to 40.4930030822754 mm.
17-02-28 19:42:49.530 -08 000000042 INF: Transformed StartingYStageITFPosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:42:49.530 -08 000000042 INF: Transformed TriggerYStagePosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:42:49.530 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:49.530 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:49.534 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:42:49.534 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:42:49.534 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:42:49.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:49.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 29 of 40 seconds left===================
17-02-28 19:42:49.582 -08 000000083 INF: FPGA: Recv ZSTEP 
17-02-28 19:42:49.582 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:49.582 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:49.583 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.1387 mm
17-02-28 19:42:49.583 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:42:49.644 -08 000000088 INF: FPGA: Recv ZTRG 
17-02-28 19:42:49.644 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:42:49.706 -08 000000079 INF: FPGA: Recv ZYT 
17-02-28 19:42:49.706 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:42:49.706 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:42:49.768 -08 000000035 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:42:49.768 -08 000000035 INF: FPGA: Recv ZMV 
17-02-28 19:42:49.768 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:42:49.768 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 62.0328 ms
17-02-28 19:42:49.768 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:42:49.830 -08 000000093 INF: FPGA: Recv ZDACR 60292
17-02-28 19:42:49.830 -08 000000042 INF: Z Motor: MoveAndTrigger took 247.3049 ms w/comms
17-02-28 19:42:49.830 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:42:49.830 -08 000000042 INF: Z Motor: MoveAbsStepped took 247.4532 ms
17-02-28 19:42:49.830 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:49.831 -08 000000042 INF: Transformed XStagePosition from 69.18564 mm to 69.1856384277344 mm.
17-02-28 19:42:49.840 -08 000000042 INF: Transformed StartingYStagePosition from 52.1980049133301 mm to 52.1980049133301 mm.
17-02-28 19:42:49.840 -08 000000042 INF: Transformed StartingYStageITFPosition from 51.9980049133301 mm to 51.9980049133301 mm.
17-02-28 19:42:49.840 -08 000000042 INF: Transformed TriggerYStagePosition from 51.9980049133301 mm to 51.9980049133301 mm.
17-02-28 19:42:49.840 -08 000000042 INF: Z Motor: Set Z velocity to 0.561 mm/s / 723121 16.16 format
17-02-28 19:42:49.840 -08 000000042 INF: FPGA: Xmit ZSTEP 723121\n
17-02-28 19:42:49.892 -08 000000074 INF: FPGA: Recv ZSTEP 
17-02-28 19:42:49.893 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:49.893 -08 000000042 INF: Transformed XStagePosition from 69.18564 mm to 69.1856384277344 mm.
17-02-28 19:42:49.902 -08 000000042 INF: Transformed StartingYStagePosition from 52.1980049133301 mm to 52.1980049133301 mm.
17-02-28 19:42:49.902 -08 000000042 INF: Transformed StartingYStageITFPosition from 51.9980049133301 mm to 51.9980049133301 mm.
17-02-28 19:42:49.902 -08 000000042 INF: Transformed TriggerYStagePosition from 51.9980049133301 mm to 51.9980049133301 mm.
17-02-28 19:42:49.904 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:49.904 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Populating image tags===================
17-02-28 19:42:49.904 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:49.905 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 2.7 mm/sec, clearing lines = 66, image lines = 3072, channels = Emissive, TDI Z = -230.0 um, section = A_1
17-02-28 19:42:49.905 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Moving motors===================
17-02-28 19:42:49.906 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Moving motors===================
17-02-28 19:42:49.907 -08 000000010 INF: ===================MoveEmissionFilters===================
17-02-28 19:42:49.907 -08 000000045 INF: ===================Move X,Y===================
17-02-28 19:42:49.908 -08 000000058 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:49.908 -08 000000037 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:49.908 -08 000000054 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:49.908 -08 000000025 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:49.908 -08 000000045 INF: ===================Move X,Y, Parallel===================
17-02-28 19:42:49.909 -08 000000058 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:49.909 -08 000000054 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:49.909 -08 000000025 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:49.909 -08 000000101 INF: ===================Move X Motor without settling===================
17-02-28 19:42:49.909 -08 000000094 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:49.909 -08 000000101 INF: X Motor: Xmit PR VM\n
17-02-28 19:42:49.909 -08 000000094 INF: Y Motor: Moving to 52.1980 mm @25.000 mm/sec, started at 70.1419 mm
17-02-28 19:42:49.909 -08 000000094 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:49.909 -08 000000094 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:49.910 -08 000000037 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:42:49.910 -08 000000046 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:42:49.910 -08 000000079 INF: ===================Move Emission Filter 42(sim) to IntoPath===================
17-02-28 19:42:49.910 -08 000000087 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:42:49.910 -08 000000083 INF: ===================Move Emission Filter 22(sim) to IntoPath===================
17-02-28 19:42:49.910 -08 000000087 INF: ======================================
17-02-28 19:42:49.911 -08 000000067 INF: ===================Move Emission Filter 31(sim) to IntoPath===================
17-02-28 19:42:49.911 -08 000000093 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:42:49.911 -08 000000079 INF: ======================================
17-02-28 19:42:49.911 -08 000000084 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:42:49.911 -08 000000023 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:42:49.911 -08 000000023 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:42:49.911 -08 000000067 INF: ======================================
17-02-28 19:42:49.912 -08 000000084 INF: ======================================
17-02-28 19:42:49.912 -08 000000023 INF: ======================================
17-02-28 19:42:49.912 -08 000000093 INF: ======================================
17-02-28 19:42:49.913 -08 000000054 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:49.913 -08 000000046 INF: ======================================
17-02-28 19:42:49.913 -08 000000083 INF: ======================================
17-02-28 19:42:49.914 -08 000000037 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:49.914 -08 000000054 INF: ======================================
17-02-28 19:42:49.915 -08 000000025 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:49.915 -08 000000058 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:49.915 -08 000000037 INF: ======================================
17-02-28 19:42:49.916 -08 000000025 INF: ======================================
17-02-28 19:42:49.916 -08 000000058 INF: ======================================
17-02-28 19:42:49.918 -08 000000010 INF: ======================================
17-02-28 19:42:49.956 -08 000000101 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:42:49.956 -08 000000101 INF: X Motor: Xmit PR VI\n
17-02-28 19:42:49.956 -08 000000094 INF: Y Motor: Recv ok\r
17-02-28 19:42:49.956 -08 000000094 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:49.956 -08 000000094 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:50.021 -08 000000094 INF: Y Motor: Recv ok\r
17-02-28 19:42:50.021 -08 000000094 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:50.021 -08 000000101 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:42:50.021 -08 000000101 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:42:50.021 -08 000000101 INF: X Motor: Moving to 69.1856 mm @15.000 mm/sec, started at 69.1465 mm
17-02-28 19:42:50.021 -08 000000101 INF: X Motor: Xmit MA 4172\n
17-02-28 19:42:50.082 -08 000000094 INF: Y Motor: Recv v 0\r
17-02-28 19:42:50.082 -08 000000094 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:50.082 -08 000000094 INF: Y Motor: Set target position to 4719800 encoder counts
17-02-28 19:42:50.082 -08 000000094 INF: Y Motor: Xmit s r0xca 4719800\r
17-02-28 19:42:50.083 -08 000000101 INF: X Motor: Recv MA 4172\r\n>
17-02-28 19:42:50.083 -08 000000101 INF: X Motor: WaitUntilStopped 60003
17-02-28 19:42:50.143 -08 000000094 INF: Y Motor: Recv ok\r
17-02-28 19:42:50.143 -08 000000094 INF: Y Motor: Start the move command
17-02-28 19:42:50.143 -08 000000094 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:50.208 -08 000000094 INF: Y Motor: Recv ok\r
17-02-28 19:42:50.208 -08 000000094 INF: Y Motor: WaitUntilStopped 60718
17-02-28 19:42:50.208 -08 000000094 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:50.332 -08 000000094 INF: Y Motor: Unshifted Position: 6428810
17-02-28 19:42:50.382 -08 000000094 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:50.394 -08 000000101 INF: X Motor: Xmit PR ER\n
17-02-28 19:42:50.458 -08 000000101 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:42:50.458 -08 000000101 INF: X Motor: Moved to 69.1855 after 375 ms
17-02-28 19:42:50.458 -08 000000101 INF: ======================================
17-02-28 19:42:50.507 -08 000000094 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:50.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:50.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 28 of 40 seconds left===================
17-02-28 19:42:50.645 -08 000000094 INF: Y Motor: Unshifted Position: 5725019
17-02-28 19:42:50.695 -08 000000094 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:50.819 -08 000000094 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:50.955 -08 000000094 INF: Y Motor: Unshifted Position: 4948675
17-02-28 19:42:51.005 -08 000000094 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:51.129 -08 000000094 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:51.266 -08 000000094 INF: Y Motor: Unshifted Position: 4719799
17-02-28 19:42:51.266 -08 000000094 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:51.266 -08 000000094 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:51.331 -08 000000094 INF: Y Motor: Recv v 0\r
17-02-28 19:42:51.331 -08 000000094 INF: Y Motor: Moved to 52.1980 after 1123 ms
17-02-28 19:42:51.331 -08 000000094 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:51.393 -08 000000094 INF: Y Motor: Recv v 4097\r
17-02-28 19:42:51.393 -08 000000094 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:51.393 -08 000000094 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:51.455 -08 000000094 INF: Y Motor: Recv v 0\r
17-02-28 19:42:51.455 -08 000000094 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:51.455 -08 000000094 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:51.517 -08 000000094 INF: Y Motor: Recv v 134217728\r
17-02-28 19:42:51.517 -08 000000094 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:42:51.517 -08 000000094 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:51.517 -08 000000094 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:51.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:51.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 27 of 40 seconds left===================
17-02-28 19:42:51.581 -08 000000094 INF: Y Motor: Recv v 0\r
17-02-28 19:42:51.581 -08 000000094 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:51.581 -08 000000094 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:51.581 -08 000000094 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:51.641 -08 000000094 INF: Y Motor: Recv ok\r
17-02-28 19:42:51.641 -08 000000094 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:51.641 -08 000000094 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:51.705 -08 000000094 INF: Y Motor: Recv ok\r
17-02-28 19:42:51.705 -08 000000094 INF: ======================================
17-02-28 19:42:51.706 -08 000000045 INF: ===================Move X,Y===================
17-02-28 19:42:51.708 -08 000000045 INF: ======================================
17-02-28 19:42:51.709 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Moving motors===================
17-02-28 19:42:51.710 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:51.711 -08 000000042 INF: Y Motor: Set max velocity (2700000), unit is 0.1 counts/sec
17-02-28 19:42:51.711 -08 000000042 INF: Y Motor: Xmit s r0xcb 2700000\r
17-02-28 19:42:51.769 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:42:51.769 -08 000000042 INF: FPGA: Xmit ZFREQCL 5111\n
17-02-28 19:42:51.826 -08 000000077 INF: FPGA: Recv ZFREQCL
17-02-28 19:42:51.826 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Reporting Motor Positions===================
17-02-28 19:42:51.826 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:51.827 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:51.888 -08 000000060 INF: FPGA: Recv TDIYERD 5219800
17-02-28 19:42:51.888 -08 000000042 INF: Before scan, Y encoder from FPGA = 5219800 counts (52.198 mm)
17-02-28 19:42:51.888 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:51.889 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:51.890 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:51.890 -08 000000047 INF: ===================Set YMotor gains for scans===================
17-02-28 19:42:51.890 -08 000000047 INF: ======================================
17-02-28 19:42:51.891 -08 000000088 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:42:51.891 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:51.893 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:51.894 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:42:51.894 -08 000000088 INF: FPGA: Xmit TDIYPOS 5199800\n
17-02-28 19:42:51.953 -08 000000037 INF: FPGA: Recv TDIYPOS
17-02-28 19:42:51.953 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:51.955 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:42:51.955 -08 000000088 INF: FPGA: Xmit TDIYARM2 3072 1 1\n
17-02-28 19:42:52.015 -08 000000045 INF: FPGA: Recv TDIYARM2
17-02-28 19:42:52.015 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:52.017 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:52.018 -08 000000088 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:42:52.019 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:52.021 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:52.022 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:52.022 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:42:52.399 -08 000000088 INF: Camera #0 AttachBuffer (imageDataPtr = 73154600704 imgPtr = 73154600704 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:42:52.399 -08 000000088 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:42:52.399 -08 000000088 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:42:52.414 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:52.416 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:52.417 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:52.419 -08 000000088 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:42:52.420 -08 000000088 INF: ===================TDI Scan Setup, Serial, Delay Next Z Move Until Y===================
17-02-28 19:42:52.420 -08 000000088 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:42:52.422 -08 000000088 INF: ===================TDI Scan Setup, Serial, Arm Z Motor===================
17-02-28 19:42:52.423 -08 000000088 INF: Z Motor: Entering ArmAbsStepped
17-02-28 19:42:52.423 -08 000000088 INF: Z Motor: Arming to move to -0.0100 mm
17-02-28 19:42:52.423 -08 000000088 INF: FPGA: Xmit ZYT 0 2\n
17-02-28 19:42:52.451 -08 000000046 INF: FPGA: Recv ZYT 
17-02-28 19:42:52.451 -08 000000088 INF: Z Motor: ZARM will arm Z motor and start the ramp when first camera image trigger pulse is sent (past camera clearing lines)
17-02-28 19:42:52.451 -08 000000088 INF: FPGA: Xmit ZARM 2621\n
17-02-28 19:42:52.513 -08 000000070 INF: FPGA: Recv ZARM
17-02-28 19:42:52.513 -08 000000088 INF: Z Motor: ArmAndSetTriggerMode 'ZARM' command took 61.9032 ms
17-02-28 19:42:52.513 -08 000000088 INF: Z Motor: ArmAbsStepped took 90.2955 ms
17-02-28 19:42:52.513 -08 000000088 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:42:52.515 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:42:52.516 -08 000000088 INF: ======================================
17-02-28 19:42:52.517 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:52.519 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:52.519 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:52.519 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:52.520 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:52.521 -08 000000053 INF: ===================Move Excitation Filter 2 (Emissive) to 'OD1.0'===================
17-02-28 19:42:52.521 -08 000000056 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:42:52.521 -08 000000053 INF: Excitation Filter 2: Moving 'Emissive' to index 3 (OD1.0)
17-02-28 19:42:52.521 -08 000000053 INF: Excitation Filter 2: Moving to 135.0000 degrees
17-02-28 19:42:52.521 -08 000000053 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:42:52.521 -08 000000056 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:42:52.522 -08 000000056 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:42:52.522 -08 000000056 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.2509 ms
17-02-28 19:42:52.522 -08 000000053 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:42:52.522 -08 000000056 INF: ======================================
17-02-28 19:42:52.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:52.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 26 of 40 seconds left===================
17-02-28 19:42:52.889 -08 000000035 INF: FPGA: Recv EX2MV
17-02-28 19:42:52.889 -08 000000053 INF: Excitation Filter 2: Moved 107 steps in 367.7758 ms
17-02-28 19:42:52.889 -08 000000053 INF: Excitation Filter 2: Moved to 135.2810 degrees (target was 135.0000) in 367.8674 ms
17-02-28 19:42:52.889 -08 000000053 INF: Excitation Filter 2: Moved 'Emissive' to index 3 (OD1.0) in 367.943 ms
17-02-28 19:42:52.889 -08 000000053 INF: ======================================
17-02-28 19:42:52.891 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:52.893 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:52.894 -08 000000094 INF: ===================Serial===================
17-02-28 19:42:52.894 -08 000000047 INF: ===================Camera TDI===================
17-02-28 19:42:52.894 -08 000000010 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:52.894 -08 000000065 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:52.894 -08 000000065 INF: Y Motor: Moving to 50.6349 mm @2.700 mm/sec, started at 52.1980 mm
17-02-28 19:42:52.894 -08 000000065 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:52.894 -08 000000065 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:52.894 -08 000000094 INF: ===================Serial, FPGA Z Wait===================
17-02-28 19:42:52.895 -08 000000094 INF: FPGA: Xmit ZWAIT\n
17-02-28 19:42:52.895 -08 000000010 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:42:52.895 -08 000000047 INF: ===================Camera TDI, Parallel===================
17-02-28 19:42:52.896 -08 000000010 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:42:52.896 -08 000000084 INF: ===================Camera TDI===================
17-02-28 19:42:52.897 -08 000000084 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:52.897 -08 000000084 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:52.953 -08 000000065 INF: Y Motor: Recv ok\r
17-02-28 19:42:52.953 -08 000000065 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:52.953 -08 000000065 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:53.015 -08 000000065 INF: Y Motor: Recv ok\r
17-02-28 19:42:53.015 -08 000000065 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:53.047 -08 000000084 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:53.047 -08 000000084 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:53.076 -08 000000065 INF: Y Motor: Recv v 0\r
17-02-28 19:42:53.076 -08 000000065 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:53.076 -08 000000065 INF: Y Motor: Set target position to 4563491 encoder counts
17-02-28 19:42:53.076 -08 000000065 INF: Y Motor: Xmit s r0xca 4563491\r
17-02-28 19:42:53.138 -08 000000065 INF: Y Motor: Recv ok\r
17-02-28 19:42:53.138 -08 000000065 INF: Y Motor: Start the move command
17-02-28 19:42:53.138 -08 000000065 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:53.197 -08 000000084 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:53.197 -08 000000084 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:53.203 -08 000000065 INF: Y Motor: Recv ok\r
17-02-28 19:42:53.203 -08 000000065 INF: Y Motor: WaitUntilStopped 60579
17-02-28 19:42:53.203 -08 000000065 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:53.329 -08 000000065 INF: Y Motor: Unshifted Position: 4688171
17-02-28 19:42:53.347 -08 000000084 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:42:53.347 -08 000000084 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:42:53.347 -08 000000084 INF: ===================Camera #0 Frame #1===================
17-02-28 19:42:53.379 -08 000000065 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:53.500 -08 000000084 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:42:53.500 -08 000000084 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:42:53.500 -08 000000084 INF: ===================Camera #0 Frame #4===================
17-02-28 19:42:53.502 -08 000000065 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:53.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:53.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 25 of 40 seconds left===================
17-02-28 19:42:53.639 -08 000000087 INF: FPGA: Recv ZWAIT 
17-02-28 19:42:53.639 -08 000000094 INF: ===================Serial===================
17-02-28 19:42:53.641 -08 000000065 INF: Y Motor: Unshifted Position: 4603927
17-02-28 19:42:53.641 -08 000000094 INF: ===================Serial, Confirm position Z Motor===================
17-02-28 19:42:53.642 -08 000000094 INF: ===================Serial===================
17-02-28 19:42:53.643 -08 000000094 INF: ======================================
17-02-28 19:42:53.660 -08 000000084 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:42:53.660 -08 000000084 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:42:53.660 -08 000000084 INF: ===================Camera #0 Frame #6===================
17-02-28 19:42:53.666 -08 000000084 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:42:53.667 -08 000000084 INF: ===================CameraTDI Cleanup===================
17-02-28 19:42:53.691 -08 000000065 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:53.692 -08 000000084 INF: Camera #0 ReleaseBuffer
17-02-28 19:42:53.692 -08 000000084 INF: ===================Camera TDI===================
17-02-28 19:42:53.693 -08 000000084 INF: ======================================
17-02-28 19:42:53.695 -08 000000047 INF: ===================Camera TDI===================
17-02-28 19:42:53.696 -08 000000047 INF: ======================================
17-02-28 19:42:53.700 -08 000000023 INF: FPGA: Recv TDIYWAIT
17-02-28 19:42:53.701 -08 000000010 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:53.703 -08 000000010 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:42:53.704 -08 000000055 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:42:53.704 -08 000000055 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:42:53.704 -08 000000055 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:42:53.704 -08 000000055 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:42:53.704 -08 000000055 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:42:53.812 -08 000000065 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:53.951 -08 000000065 INF: Y Motor: Unshifted Position: 4563491
17-02-28 19:42:53.951 -08 000000065 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:53.951 -08 000000065 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:54.013 -08 000000065 INF: Y Motor: Recv v 0\r
17-02-28 19:42:54.013 -08 000000065 INF: Y Motor: Moved to 50.6349 after 810 ms
17-02-28 19:42:54.013 -08 000000065 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:54.073 -08 000000053 INF: FPGA: Recv EX2MV
17-02-28 19:42:54.073 -08 000000055 INF: Excitation Filter 2: Moved -107 steps in 368.8148 ms
17-02-28 19:42:54.073 -08 000000055 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 368.9273 ms
17-02-28 19:42:54.073 -08 000000055 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 369.0037 ms
17-02-28 19:42:54.073 -08 000000055 INF: ======================================
17-02-28 19:42:54.075 -08 000000065 INF: Y Motor: Recv v 4097\r
17-02-28 19:42:54.075 -08 000000065 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:54.075 -08 000000065 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:54.075 -08 000000010 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:54.076 -08 000000010 INF: ======================================
17-02-28 19:42:54.137 -08 000000065 INF: Y Motor: Recv v 0\r
17-02-28 19:42:54.137 -08 000000065 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:54.137 -08 000000065 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:54.199 -08 000000065 INF: Y Motor: Recv v 134217728\r
17-02-28 19:42:54.199 -08 000000065 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:42:54.199 -08 000000065 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:54.199 -08 000000065 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:54.265 -08 000000065 INF: Y Motor: Recv v 0\r
17-02-28 19:42:54.265 -08 000000065 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:54.265 -08 000000065 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:54.265 -08 000000065 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:54.324 -08 000000065 INF: Y Motor: Recv ok\r
17-02-28 19:42:54.324 -08 000000065 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:54.324 -08 000000065 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:54.386 -08 000000065 INF: Y Motor: Recv ok\r
17-02-28 19:42:54.386 -08 000000065 INF: ======================================
17-02-28 19:42:54.387 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:54.389 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, Scanning===================
17-02-28 19:42:54.390 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:54.390 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:42:54.449 -08 000000060 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:42:54.449 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:54.511 -08 000000053 INF: FPGA: Recv TDIYERD 5063492
17-02-28 19:42:54.511 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:42:54.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:54.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 24 of 40 seconds left===================
17-02-28 19:42:54.573 -08 000000101 INF: FPGA: Recv ZADCR 2422
17-02-28 19:42:54.573 -08 000000042 INF: At scan end Y pos = 50.635 and Z pos = -0.010. Y moved -1.363 mm
17-02-28 19:42:54.573 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:42:54.635 -08 000000051 INF: FPGA: Recv TDIPULSES 3073
17-02-28 19:42:54.635 -08 000000042 INF: The FPGA sent 3072 triggers to the camera ; expected 3072
17-02-28 19:42:54.635 -08 000000042 INF: TDIScan finished after 4742.5975 ms
17-02-28 19:42:54.635 -08 000000042 INF: Image[0]: Y should trigger at 51.998 mm, 2nd row was at 51.985 mm (error = -0.013 mm)
17-02-28 19:42:54.636 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:42:54.697 -08 000000093 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:42:54.698 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:54.698 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:54.699 -08 000000027 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:42:54.699 -08 000000009 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:42:54.699 -08 000000054 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:42:54.700 -08 000000054 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:42:54.700 -08 000000054 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:42:54.700 -08 000000027 INF: ======================================
17-02-28 19:42:54.700 -08 000000009 INF: ======================================
17-02-28 19:42:54.761 -08 000000054 INF: Y Motor: Recv ok\r
17-02-28 19:42:54.761 -08 000000054 INF: ======================================
17-02-28 19:42:54.762 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:54.764 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:54.765 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive, HandleImage(Emissive)===================
17-02-28 19:42:54.803 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Channels Emissive===================
17-02-28 19:42:54.803 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:54.804 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:54.805 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, ETF: Extracting coords===================
17-02-28 19:42:54.812 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:54.813 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Selecting focus point===================
17-02-28 19:42:54.813 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Selecting focus point, Extracting metrics===================
17-02-28 19:42:55.353 -08 000000079 INF: RunCopyService queue size at 2/28/2017 7:42:55 PM is 2
17-02-28 19:42:55.403 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1, Selecting focus point===================
17-02-28 19:42:55.426 -08 000000042 INF: ETF for image Index#0: Best Z position at bottom surface = -0.0885434358285381Best Z position at top surface = -0.161190397728713Best Z position at top surface + compensator offset = -0.138490397728713 C:1,L:1,B
17-02-28 19:42:55.427 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 0 is -0.161190397728713
17-02-28 19:42:55.427 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 0 is 51.64071
17-02-28 19:42:55.427 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 1 is -0.0885434358285381
17-02-28 19:42:55.427 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 1 is 51.2919
17-02-28 19:42:55.427 -08 000000042 INF: Z-height at LaneBottomSurface is -0.0885434358285381.
17-02-28 19:42:55.427 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:55.427 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:42:55.428 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:42:55.447 -08 000000009 INF: FPGA: Recv ZSTEP 
17-02-28 19:42:55.457 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Focus Point 1===================
17-02-28 19:42:55.459 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:55.459 -08 000000042 INF: Problem detilting Lane 1, LaneBottomSurface Surface after ETF. Moving to default tilt positions: m1=4.998974, m2=5.393944, m3=5.34035
17-02-28 19:42:55.460 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:55.461 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:55.462 -08 000000094 INF: ===================Move Tilt Motor 1===================
17-02-28 19:42:55.462 -08 000000083 INF: ===================Move Tilt Motor 2===================
17-02-28 19:42:55.462 -08 000000045 INF: ===================Move Tilt Motor 3===================
17-02-28 19:42:55.462 -08 000000083 INF: ======================================
17-02-28 19:42:55.462 -08 000000094 INF: ======================================
17-02-28 19:42:55.463 -08 000000045 INF: Tilt Motor 3: Moving to 5.3416 mm, started at 5.3404 mm, delta = 0.0012 mm
17-02-28 19:42:55.463 -08 000000045 INF: FPGA: Xmit T3RD\n
17-02-28 19:42:55.509 -08 000000065 INF: FPGA: Recv T3RD 21025
17-02-28 19:42:55.509 -08 000000045 INF: Tilt Motor 3: Encoder: at motor step 3504 + 1/6
17-02-28 19:42:55.509 -08 000000045 INF: Tilt Motor 3: Moving to 21030 encoder counts
17-02-28 19:42:55.509 -08 000000045 INF: FPGA: Xmit T3MOVETO 21030\n
17-02-28 19:42:55.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:55.537 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 23 of 40 seconds left===================
17-02-28 19:42:55.633 -08 000000039 INF: FPGA: Recv T3MOVETO 0
17-02-28 19:42:55.633 -08 000000045 INF: Tilt Motor 3: To move from 5.340 to 5.342 (0.001 mm) should take 1 steps, but required 0 steps (0.000 mm). Slippage = -0.002 mm (-1.23%)
17-02-28 19:42:55.633 -08 000000045 INF: FPGA: Xmit T3RD\n
17-02-28 19:42:55.695 -08 000000094 INF: FPGA: Recv T3RD 21026
17-02-28 19:42:55.695 -08 000000045 INF: Tilt Motor 3: Encoder: at motor step 3504 + 2/6
17-02-28 19:42:55.695 -08 000000045 INF: FPGA: Xmit T3RD\n
17-02-28 19:42:55.757 -08 000000077 INF: FPGA: Recv T3RD 21026
17-02-28 19:42:55.757 -08 000000045 INF: Tilt Motor 3: Encoder: at motor step 3504 + 2/6
17-02-28 19:42:55.757 -08 000000045 INF: FPGA: Xmit T3RD\n
17-02-28 19:42:55.819 -08 000000086 INF: FPGA: Recv T3RD 21026
17-02-28 19:42:55.819 -08 000000045 INF: Tilt Motor 3: Encoder: at motor step 3504 + 2/6
17-02-28 19:42:55.819 -08 000000045 INF: Tilt Motor 3: After move to 5.3416, error = -0.0010, min/max error = -0.0017/0.0013, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:42:55.819 -08 000000045 INF: Tilt Motor 3: Moved to 5.3406 after 356.1506 ms
17-02-28 19:42:55.819 -08 000000045 INF: ======================================
17-02-28 19:42:55.820 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:55.821 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:55.822 -08 000000042 INF: ETF Best Z: -0.08854344 mm (23211 DAC)
17-02-28 19:42:55.823 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:55.823 -08 000000042 INF: BottomSurfaceZPositions[] was -0.0885434358285381, so used the BottomSurfaceZPositions[] (-0.0885434358285381).
17-02-28 19:42:55.824 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:55.824 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:55.824 -08 000000042 INF: Z Motor: Moving to -0.0885 mm, started at -0.0100 mm
17-02-28 19:42:55.824 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:42:55.884 -08 000000104 INF: FPGA: Recv ZTRG 
17-02-28 19:42:55.884 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:42:55.946 -08 000000070 INF: FPGA: Recv ZYT 
17-02-28 19:42:55.946 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:42:55.946 -08 000000042 INF: FPGA: Xmit ZMV 23211\n
17-02-28 19:42:56.008 -08 000000044 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:42:56.008 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:42:56.071 -08 000000084 INF: FPGA: Recv ZMV 
17-02-28 19:42:56.071 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 124.0227 ms
17-02-28 19:42:56.071 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:42:56.134 -08 000000023 INF: FPGA: Recv ZDACR 23211
17-02-28 19:42:56.134 -08 000000042 INF: Z Motor: MoveAndTrigger took 308.7614 ms w/comms
17-02-28 19:42:56.134 -08 000000042 INF: Z Motor: After move to -0.0885, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:42:56.134 -08 000000042 INF: Z Motor: MoveAbsStepped took 308.9328 ms
17-02-28 19:42:56.134 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:56.141 -08 000000042 INF: Compensator: Remaining OutOfPath
17-02-28 19:42:56.141 -08 000000042 INF: Center of AC image X offset=-1.104
17-02-28 19:42:56.141 -08 000000042 INF: Center of AC image Estimated: X=69.147, Y=71.505
17-02-28 19:42:56.141 -08 000000042 INF: Center of AC image at: X=68.043, Y=71.505
17-02-28 19:42:56.144 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:42:56.145 -08 000000042 INF: Transformed XStagePosition from 68.043 mm to 68.0429992675781 mm.
17-02-28 19:42:56.172 -08 000000042 INF: Transformed StartingYStagePosition from 72.764826965332 mm to 72.764826965332 mm.
17-02-28 19:42:56.172 -08 000000042 INF: Transformed StartingYStageITFPosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:42:56.172 -08 000000042 INF: Transformed TriggerYStagePosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:42:56.175 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:56.175 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Populating image tags===================
17-02-28 19:42:56.175 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:56.175 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 6144, channels = Emissive, TDI Z = -88.5 um, section = A_1
17-02-28 19:42:56.176 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:56.177 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:56.178 -08 000000101 INF: ===================Move X,Y===================
17-02-28 19:42:56.178 -08 000000009 INF: ===================Move Z Motor===================
17-02-28 19:42:56.178 -08 000000020 INF: ===================MoveEmissionFilters===================
17-02-28 19:42:56.178 -08 000000009 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:42:56.178 -08 000000009 INF: ======================================
17-02-28 19:42:56.178 -08 000000101 INF: ===================Move X,Y, Parallel===================
17-02-28 19:42:56.179 -08 000000088 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:56.179 -08 000000070 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:56.179 -08 000000079 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:56.179 -08 000000010 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:56.179 -08 000000051 INF: ===================Move X Motor without settling===================
17-02-28 19:42:56.179 -08 000000084 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:56.179 -08 000000051 INF: X Motor: Xmit PR VM\n
17-02-28 19:42:56.179 -08 000000084 INF: Y Motor: Moving to 72.7648 mm @25.000 mm/sec, started at 50.6349 mm
17-02-28 19:42:56.180 -08 000000084 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:56.180 -08 000000084 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:56.180 -08 000000088 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:42:56.180 -08 000000070 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:56.180 -08 000000079 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:56.180 -08 000000010 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:42:56.181 -08 000000046 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:42:56.181 -08 000000086 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:42:56.181 -08 000000027 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:42:56.181 -08 000000050 INF: ===================Move Emission Filter 22(sim) to IntoPath===================
17-02-28 19:42:56.181 -08 000000048 INF: ===================Move Emission Filter 31(sim) to IntoPath===================
17-02-28 19:42:56.181 -08 000000063 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:42:56.181 -08 000000087 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:42:56.181 -08 000000104 INF: ===================Move Emission Filter 42(sim) to IntoPath===================
17-02-28 19:42:56.181 -08 000000086 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:42:56.181 -08 000000063 INF: ======================================
17-02-28 19:42:56.181 -08 000000086 INF: ======================================
17-02-28 19:42:56.182 -08 000000104 INF: ======================================
17-02-28 19:42:56.182 -08 000000046 INF: ======================================
17-02-28 19:42:56.182 -08 000000087 INF: ======================================
17-02-28 19:42:56.182 -08 000000048 INF: ======================================
17-02-28 19:42:56.183 -08 000000088 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:42:56.184 -08 000000010 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:42:56.184 -08 000000027 INF: ======================================
17-02-28 19:42:56.184 -08 000000079 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:42:56.185 -08 000000088 INF: ======================================
17-02-28 19:42:56.185 -08 000000050 INF: ======================================
17-02-28 19:42:56.185 -08 000000010 INF: ======================================
17-02-28 19:42:56.186 -08 000000070 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:42:56.186 -08 000000079 INF: ======================================
17-02-28 19:42:56.187 -08 000000070 INF: ======================================
17-02-28 19:42:56.188 -08 000000020 INF: ======================================
17-02-28 19:42:56.259 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:42:56.259 -08 000000084 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:56.259 -08 000000084 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:56.259 -08 000000051 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:42:56.259 -08 000000051 INF: X Motor: Xmit PR VI\n
17-02-28 19:42:56.324 -08 000000051 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:42:56.324 -08 000000051 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:42:56.324 -08 000000051 INF: X Motor: Moving to 68.0430 mm @15.000 mm/sec, started at 69.1855 mm
17-02-28 19:42:56.324 -08 000000051 INF: X Motor: Xmit MA 3704\n
17-02-28 19:42:56.325 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:42:56.325 -08 000000084 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:56.386 -08 000000084 INF: Y Motor: Recv v 0\r
17-02-28 19:42:56.386 -08 000000084 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:56.386 -08 000000084 INF: Y Motor: Set target position to 6776483 encoder counts
17-02-28 19:42:56.386 -08 000000084 INF: Y Motor: Xmit s r0xca 6776483\r
17-02-28 19:42:56.386 -08 000000051 INF: X Motor: Recv MA 3704\r\n>
17-02-28 19:42:56.387 -08 000000051 INF: X Motor: WaitUntilStopped 60076
17-02-28 19:42:56.448 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:42:56.448 -08 000000084 INF: Y Motor: Start the move command
17-02-28 19:42:56.448 -08 000000084 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:56.510 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:42:56.510 -08 000000084 INF: Y Motor: WaitUntilStopped 60885
17-02-28 19:42:56.510 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:56.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:56.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 22 of 40 seconds left===================
17-02-28 19:42:56.634 -08 000000084 INF: Y Motor: Unshifted Position: 4647133
17-02-28 19:42:56.684 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:56.808 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:56.947 -08 000000084 INF: Y Motor: Unshifted Position: 5352648
17-02-28 19:42:56.997 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:57.009 -08 000000051 INF: X Motor: Xmit PR ER\n
17-02-28 19:42:57.071 -08 000000051 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:42:57.071 -08 000000051 INF: X Motor: Moved to 68.0430 after 684 ms
17-02-28 19:42:57.071 -08 000000051 INF: ======================================
17-02-28 19:42:57.121 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:57.260 -08 000000084 INF: Y Motor: Unshifted Position: 6127636
17-02-28 19:42:57.310 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:57.434 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:57.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:57.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 21 of 40 seconds left===================
17-02-28 19:42:57.570 -08 000000084 INF: Y Motor: Unshifted Position: 6750419
17-02-28 19:42:57.620 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:57.759 -08 000000084 INF: Y Motor: Unshifted Position: 6776486
17-02-28 19:42:57.759 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:42:57.759 -08 000000084 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:57.821 -08 000000084 INF: Y Motor: Recv v 0\r
17-02-28 19:42:57.821 -08 000000084 INF: Y Motor: Moved to 72.7649 after 1311 ms
17-02-28 19:42:57.821 -08 000000084 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:42:57.883 -08 000000084 INF: Y Motor: Recv v 4096\r
17-02-28 19:42:57.883 -08 000000084 INF: Y Motor: Status After move finished OK:
17-02-28 19:42:57.883 -08 000000084 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:57.945 -08 000000084 INF: Y Motor: Recv v 0\r
17-02-28 19:42:57.945 -08 000000084 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:57.945 -08 000000084 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:42:58.007 -08 000000084 INF: Y Motor: Recv v 402653184\r
17-02-28 19:42:58.007 -08 000000084 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:42:58.007 -08 000000084 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:42:58.007 -08 000000084 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:42:58.069 -08 000000084 INF: Y Motor: Recv v 0\r
17-02-28 19:42:58.069 -08 000000084 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:42:58.069 -08 000000084 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:42:58.069 -08 000000084 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:58.131 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:42:58.131 -08 000000084 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:42:58.131 -08 000000084 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:58.194 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:42:58.194 -08 000000084 INF: ======================================
17-02-28 19:42:58.195 -08 000000101 INF: ===================Move X,Y===================
17-02-28 19:42:58.197 -08 000000101 INF: ======================================
17-02-28 19:42:58.198 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:42:58.199 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:58.199 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:42:58.199 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:42:58.256 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:42:58.256 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:42:58.318 -08 000000055 INF: FPGA: Recv ZFREQCL
17-02-28 19:42:58.319 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Reporting Motor Positions===================
17-02-28 19:42:58.319 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:58.319 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:42:58.381 -08 000000037 INF: FPGA: Recv TDIYERD 7276484
17-02-28 19:42:58.381 -08 000000042 INF: Before scan, Y encoder from FPGA = 7276484 counts (72.765 mm)
17-02-28 19:42:58.381 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:58.382 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:58.383 -08 000000067 INF: ===================TDI Scan Setup===================
17-02-28 19:42:58.383 -08 000000076 INF: ===================Set YMotor gains for scans===================
17-02-28 19:42:58.383 -08 000000076 INF: ======================================
17-02-28 19:42:58.383 -08 000000067 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:42:58.384 -08 000000067 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:42:58.444 -08 000000035 INF: FPGA: Recv ZSEL 
17-02-28 19:42:58.444 -08 000000067 INF: FPGA: Xmit ZDACW 23211\n
17-02-28 19:42:58.505 -08 000000088 INF: FPGA: Recv ZDACW 
17-02-28 19:42:58.505 -08 000000067 INF: ===================Initializing FPGA for Dither Focus===================
17-02-28 19:42:58.505 -08 000000067 INF: DEBUG: TDIScan after moving to initial positions: Z = -0.089 mm, Active = True
17-02-28 19:42:58.505 -08 000000067 INF: FPGA: Xmit ZSEL 1\n
17-02-28 19:42:58.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:58.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 20 of 40 seconds left===================
17-02-28 19:42:58.567 -08 000000099 INF: FPGA: Recv ZSEL 
17-02-28 19:42:58.567 -08 000000067 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:42:58.567 -08 000000067 INF: ===================TDI Scan Setup===================
17-02-28 19:42:58.569 -08 000000067 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:42:58.569 -08 000000067 INF: ===================TDI Scan Setup===================
17-02-28 19:42:58.571 -08 000000067 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:58.571 -08 000000067 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:42:58.571 -08 000000067 INF: FPGA: Xmit TDIYPOS 7256483\n
17-02-28 19:42:58.629 -08 000000050 INF: FPGA: Recv TDIYPOS
17-02-28 19:42:58.629 -08 000000067 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:58.631 -08 000000067 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:42:58.631 -08 000000067 INF: FPGA: Xmit TDIYARM2 6144 1 1\n
17-02-28 19:42:58.691 -08 000000056 INF: FPGA: Recv TDIYARM2
17-02-28 19:42:58.691 -08 000000067 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:42:58.692 -08 000000067 INF: ===================TDI Scan Setup===================
17-02-28 19:42:58.694 -08 000000067 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:42:58.694 -08 000000067 INF: ===================TDI Scan Setup===================
17-02-28 19:42:58.696 -08 000000067 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:58.696 -08 000000067 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:58.697 -08 000000067 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:42:59.103 -08 000000067 INF: Camera #0 AttachBuffer (imageDataPtr = 73819689008 imgPtr = 73819689008 , attachBufferNumFrames = 24 , frameSize = 1638400,
17-02-28 19:42:59.103 -08 000000067 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 6144
17-02-28 19:42:59.103 -08 000000067 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:42:59.118 -08 000000067 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:42:59.120 -08 000000067 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:42:59.121 -08 000000067 INF: ===================TDI Scan Setup===================
17-02-28 19:42:59.122 -08 000000067 INF: ======================================
17-02-28 19:42:59.123 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:42:59.124 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:42:59.124 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:59.125 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:59.125 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:59.126 -08 000000086 INF: ===================Move Excitation Filter 2 (Emissive) to 'OD1.0'===================
17-02-28 19:42:59.126 -08 000000093 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:42:59.126 -08 000000086 INF: Excitation Filter 2: Moving 'Emissive' to index 3 (OD1.0)
17-02-28 19:42:59.126 -08 000000086 INF: Excitation Filter 2: Moving to 135.0000 degrees
17-02-28 19:42:59.126 -08 000000086 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:42:59.126 -08 000000093 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:42:59.127 -08 000000086 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:42:59.127 -08 000000093 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:42:59.127 -08 000000093 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.1395 ms
17-02-28 19:42:59.127 -08 000000093 INF: ======================================
17-02-28 19:42:59.503 -08 000000027 INF: FPGA: Recv EX2MV
17-02-28 19:42:59.503 -08 000000086 INF: Excitation Filter 2: Moved 107 steps in 376.6287 ms
17-02-28 19:42:59.503 -08 000000086 INF: Excitation Filter 2: Moved to 135.2810 degrees (target was 135.0000) in 376.7408 ms
17-02-28 19:42:59.503 -08 000000086 INF: Excitation Filter 2: Moved 'Emissive' to index 3 (OD1.0) in 376.8089 ms
17-02-28 19:42:59.503 -08 000000086 INF: ======================================
17-02-28 19:42:59.505 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:59.506 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:42:59.507 -08 000000010 INF: ===================Camera TDI===================
17-02-28 19:42:59.507 -08 000000051 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:42:59.507 -08 000000056 INF: ===================Move Y Motor without settling===================
17-02-28 19:42:59.507 -08 000000056 INF: Y Motor: Moving to 70.1419 mm @1.500 mm/sec, started at 72.7649 mm
17-02-28 19:42:59.507 -08 000000056 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:42:59.508 -08 000000056 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:42:59.508 -08 000000010 INF: ===================Camera TDI, Parallel===================
17-02-28 19:42:59.508 -08 000000051 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:42:59.508 -08 000000051 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:42:59.509 -08 000000025 INF: ===================Camera TDI===================
17-02-28 19:42:59.510 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:59.510 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:59.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:42:59.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 19 of 40 seconds left===================
17-02-28 19:42:59.567 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:42:59.567 -08 000000056 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:42:59.567 -08 000000056 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:42:59.629 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:42:59.629 -08 000000056 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:42:59.660 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:59.660 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:59.691 -08 000000056 INF: Y Motor: Recv v 0\r
17-02-28 19:42:59.691 -08 000000056 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:42:59.691 -08 000000056 INF: Y Motor: Set target position to 6514189 encoder counts
17-02-28 19:42:59.691 -08 000000056 INF: Y Motor: Xmit s r0xca 6514189\r
17-02-28 19:42:59.753 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:42:59.753 -08 000000056 INF: Y Motor: Start the move command
17-02-28 19:42:59.753 -08 000000056 INF: Y Motor: Xmit t 1\r
17-02-28 19:42:59.810 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:59.810 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:59.818 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:42:59.818 -08 000000056 INF: Y Motor: WaitUntilStopped 61749
17-02-28 19:42:59.818 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:42:59.943 -08 000000056 INF: Y Motor: Unshifted Position: 6758012
17-02-28 19:42:59.960 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:42:59.960 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:42:59.993 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:00.110 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:00.110 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:00.110 -08 000000025 INF: ===================Camera #0 Frame #1===================
17-02-28 19:43:00.116 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:00.253 -08 000000056 INF: Y Motor: Unshifted Position: 6711356
17-02-28 19:43:00.263 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:43:00.263 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:43:00.263 -08 000000025 INF: ===================Camera #0 Frame #3===================
17-02-28 19:43:00.303 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:00.420 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:00.420 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:00.420 -08 000000025 INF: ===================Camera #0 Frame #4===================
17-02-28 19:43:00.428 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:00.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:00.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 18 of 40 seconds left===================
17-02-28 19:43:00.567 -08 000000056 INF: Y Motor: Unshifted Position: 6664660
17-02-28 19:43:00.574 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:00.574 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:00.574 -08 000000025 INF: ===================Camera #0 Frame #5===================
17-02-28 19:43:00.617 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:00.727 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:00.727 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:00.727 -08 000000025 INF: ===================Camera #0 Frame #6===================
17-02-28 19:43:00.741 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:00.877 -08 000000056 INF: Y Motor: Unshifted Position: 6617707
17-02-28 19:43:00.880 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 7, frameCount = 8.
17-02-28 19:43:00.880 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 8
17-02-28 19:43:00.880 -08 000000025 INF: ===================Camera #0 Frame #8===================
17-02-28 19:43:00.927 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:01.036 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 8, frameCount = 9.
17-02-28 19:43:01.036 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 9
17-02-28 19:43:01.036 -08 000000025 INF: ===================Camera #0 Frame #9===================
17-02-28 19:43:01.051 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:01.189 -08 000000056 INF: Y Motor: Unshifted Position: 6570710
17-02-28 19:43:01.189 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 9, frameCount = 10.
17-02-28 19:43:01.189 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 10
17-02-28 19:43:01.189 -08 000000025 INF: ===================Camera #0 Frame #10===================
17-02-28 19:43:01.239 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:01.342 -08 000000025 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 11, frameCount = 12.
17-02-28 19:43:01.342 -08 000000025 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 12
17-02-28 19:43:01.342 -08 000000025 INF: ===================Camera #0 Frame #12===================
17-02-28 19:43:01.349 -08 000000025 INF: Camera complete - got 12 frames, processed 12 frames, expected 12 frames.
17-02-28 19:43:01.350 -08 000000025 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:01.363 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:01.376 -08 000000079 INF: FPGA: Recv TDIYWAIT
17-02-28 19:43:01.376 -08 000000051 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:01.377 -08 000000025 INF: Camera #0 ReleaseBuffer
17-02-28 19:43:01.377 -08 000000025 INF: ===================Camera TDI===================
17-02-28 19:43:01.378 -08 000000051 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:43:01.379 -08 000000025 INF: ======================================
17-02-28 19:43:01.379 -08 000000064 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:43:01.379 -08 000000064 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:43:01.379 -08 000000064 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:43:01.379 -08 000000064 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:43:01.379 -08 000000064 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:43:01.380 -08 000000010 INF: ===================Camera TDI===================
17-02-28 19:43:01.381 -08 000000010 INF: ======================================
17-02-28 19:43:01.502 -08 000000056 INF: Y Motor: Unshifted Position: 6523904
17-02-28 19:43:01.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:01.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 17 of 40 seconds left===================
17-02-28 19:43:01.552 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:01.688 -08 000000056 INF: Y Motor: Unshifted Position: 6514188
17-02-28 19:43:01.688 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:01.688 -08 000000056 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:01.748 -08 000000053 INF: FPGA: Recv EX2MV
17-02-28 19:43:01.748 -08 000000064 INF: Excitation Filter 2: Moved -107 steps in 368.5277 ms
17-02-28 19:43:01.748 -08 000000064 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 368.6691 ms
17-02-28 19:43:01.748 -08 000000064 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 368.7577 ms
17-02-28 19:43:01.748 -08 000000064 INF: ======================================
17-02-28 19:43:01.750 -08 000000056 INF: Y Motor: Recv v 0\r
17-02-28 19:43:01.750 -08 000000056 INF: Y Motor: Moved to 70.1419 after 1932 ms
17-02-28 19:43:01.750 -08 000000051 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:01.750 -08 000000056 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:01.751 -08 000000051 INF: ======================================
17-02-28 19:43:01.815 -08 000000056 INF: Y Motor: Recv v 4097\r
17-02-28 19:43:01.815 -08 000000056 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:01.815 -08 000000056 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:01.877 -08 000000056 INF: Y Motor: Recv v 0\r
17-02-28 19:43:01.877 -08 000000056 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:01.877 -08 000000056 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:01.939 -08 000000056 INF: Y Motor: Recv v 134217728\r
17-02-28 19:43:01.939 -08 000000056 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:43:01.939 -08 000000056 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:01.939 -08 000000056 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:02.001 -08 000000056 INF: Y Motor: Recv v 0\r
17-02-28 19:43:02.001 -08 000000056 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:02.001 -08 000000056 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:02.001 -08 000000056 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:02.063 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:43:02.063 -08 000000056 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:02.063 -08 000000056 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:02.125 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:43:02.125 -08 000000056 INF: ======================================
17-02-28 19:43:02.126 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:02.127 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:02.128 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.128 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:43:02.185 -08 000000035 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:43:02.185 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:02.248 -08 000000070 INF: FPGA: Recv TDIYERD 7014190
17-02-28 19:43:02.248 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:43:02.310 -08 000000093 INF: FPGA: Recv ZADCR 23072
17-02-28 19:43:02.310 -08 000000042 INF: At scan end Y pos = 70.142 and Z pos = -0.089. Y moved -2.423 mm
17-02-28 19:43:02.310 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:43:02.372 -08 000000067 INF: FPGA: Recv TDIPULSES 6145
17-02-28 19:43:02.372 -08 000000042 INF: The FPGA sent 6144 triggers to the camera ; expected 6144
17-02-28 19:43:02.372 -08 000000042 INF: TDIScan finished after 6227.6974 ms
17-02-28 19:43:02.372 -08 000000042 INF: Image[0]: Y should trigger at 72.565 mm, 2nd row was at 72.552 mm (error = -0.013 mm)
17-02-28 19:43:02.373 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.373 -08 000000042 INF: Z jump check: There were 0/6144 lines (retry if > 900) at which Delta Z >= 10 um; span = 1000 lines. Largest delta = 0.000 um
17-02-28 19:43:02.374 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.375 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:43:02.437 -08 000000065 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:43:02.437 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.438 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.439 -08 000000083 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:43:02.439 -08 000000046 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:43:02.439 -08 000000048 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:43:02.439 -08 000000083 INF: ======================================
17-02-28 19:43:02.439 -08 000000048 INF: ======================================
17-02-28 19:43:02.440 -08 000000046 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:43:02.440 -08 000000046 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:43:02.501 -08 000000046 INF: Y Motor: Recv ok\r
17-02-28 19:43:02.501 -08 000000046 INF: ======================================
17-02-28 19:43:02.502 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.503 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.504 -08 000000074 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:43:02.504 -08 000000074 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:43:02.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:02.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 16 of 40 seconds left===================
17-02-28 19:43:02.561 -08 000000027 INF: FPGA: Recv ZSEL 
17-02-28 19:43:02.561 -08 000000074 INF: FPGA: Xmit ZDACW 23211\n
17-02-28 19:43:02.623 -08 000000060 INF: FPGA: Recv ZDACW 
17-02-28 19:43:02.624 -08 000000074 INF: ===================DitherPostSwathFocusCleanup, FPGA Bypass Data blocking===================
17-02-28 19:43:02.624 -08 000000074 INF: FPGA: Xmit TDIBB 0\n
17-02-28 19:43:02.685 -08 000000037 INF: FPGA: Recv TDIBB
17-02-28 19:43:02.685 -08 000000074 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:43:02.686 -08 000000074 INF: ======================================
17-02-28 19:43:02.687 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.689 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.690 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, HandleImage(Emissive)===================
17-02-28 19:43:02.745 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:02.745 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:02.746 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:03.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:03.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 15 of 40 seconds left===================
17-02-28 19:43:04.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:04.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 14 of 40 seconds left===================
17-02-28 19:43:05.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:05.538 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 13 of 40 seconds left===================
17-02-28 19:43:05.827 -08 000000042 INF: No fiducial detected. Move X 0.552mm and try AC scan again
17-02-28 19:43:05.827 -08 000000042 INF: BottomSurfaceZPositions[] was -0.0885434358285381, so used the BottomSurfaceZPositions[] (-0.0885434358285381).
17-02-28 19:43:05.828 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:05.828 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:05.828 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:05.829 -08 000000042 INF: Compensator: Remaining OutOfPath
17-02-28 19:43:05.829 -08 000000042 INF: Center of AC image X offset=-0.552
17-02-28 19:43:05.829 -08 000000042 INF: Center of AC image Estimated: X=69.147, Y=71.505
17-02-28 19:43:05.829 -08 000000042 INF: Center of AC image at: X=68.595, Y=71.505
17-02-28 19:43:05.833 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:05.833 -08 000000042 INF: Transformed XStagePosition from 68.59499 mm to 68.5949935913086 mm.
17-02-28 19:43:05.842 -08 000000042 INF: Transformed StartingYStagePosition from 72.764826965332 mm to 72.764826965332 mm.
17-02-28 19:43:05.842 -08 000000042 INF: Transformed StartingYStageITFPosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:43:05.842 -08 000000042 INF: Transformed TriggerYStagePosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:43:05.844 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:05.844 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Populating image tags===================
17-02-28 19:43:05.844 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:05.844 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 6144, channels = Emissive, TDI Z = -88.5 um, section = A_1
17-02-28 19:43:05.845 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:43:05.845 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:43:05.846 -08 000000047 INF: ===================MoveEmissionFilters===================
17-02-28 19:43:05.846 -08 000000054 INF: ===================Move X,Y===================
17-02-28 19:43:05.846 -08 000000086 INF: ===================Move Z Motor===================
17-02-28 19:43:05.846 -08 000000086 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:05.847 -08 000000086 INF: ======================================
17-02-28 19:43:05.847 -08 000000063 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:43:05.847 -08 000000039 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:43:05.847 -08 000000065 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:43:05.847 -08 000000054 INF: ===================Move X,Y, Parallel===================
17-02-28 19:43:05.847 -08 000000087 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:43:05.848 -08 000000063 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:05.848 -08 000000039 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:43:05.848 -08 000000077 INF: ===================Move X Motor without settling===================
17-02-28 19:43:05.848 -08 000000056 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:05.848 -08 000000087 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:43:05.848 -08 000000077 INF: X Motor: Xmit PR VM\n
17-02-28 19:43:05.848 -08 000000056 INF: Y Motor: Moving to 72.7648 mm @25.000 mm/sec, started at 70.1419 mm
17-02-28 19:43:05.849 -08 000000086 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:43:05.849 -08 000000070 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:43:05.849 -08 000000056 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:05.849 -08 000000056 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:05.849 -08 000000104 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:43:05.849 -08 000000065 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:43:05.849 -08 000000079 INF: ===================Move Emission Filter 22(sim) to IntoPath===================
17-02-28 19:43:05.849 -08 000000086 INF: ======================================
17-02-28 19:43:05.849 -08 000000088 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:43:05.849 -08 000000083 INF: ===================Move Emission Filter 42(sim) to IntoPath===================
17-02-28 19:43:05.849 -08 000000079 INF: ======================================
17-02-28 19:43:05.850 -08 000000083 INF: ======================================
17-02-28 19:43:05.850 -08 000000088 INF: ======================================
17-02-28 19:43:05.850 -08 000000104 INF: ======================================
17-02-28 19:43:05.851 -08 000000053 INF: ===================Move Emission Filter 31(sim) to IntoPath===================
17-02-28 19:43:05.851 -08 000000051 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:43:05.851 -08 000000053 INF: ======================================
17-02-28 19:43:05.851 -08 000000087 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:43:05.852 -08 000000070 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:43:05.852 -08 000000039 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:43:05.852 -08 000000070 INF: ======================================
17-02-28 19:43:05.852 -08 000000051 INF: ======================================
17-02-28 19:43:05.853 -08 000000065 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:43:05.853 -08 000000087 INF: ======================================
17-02-28 19:43:05.853 -08 000000039 INF: ======================================
17-02-28 19:43:05.853 -08 000000063 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:43:05.854 -08 000000065 INF: ======================================
17-02-28 19:43:05.855 -08 000000063 INF: ======================================
17-02-28 19:43:05.856 -08 000000047 INF: ======================================
17-02-28 19:43:05.932 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:43:05.932 -08 000000056 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:05.932 -08 000000056 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:05.932 -08 000000077 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:43:05.932 -08 000000077 INF: X Motor: Xmit PR VI\n
17-02-28 19:43:05.994 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:43:05.994 -08 000000056 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:05.994 -08 000000077 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:43:05.994 -08 000000077 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:43:05.994 -08 000000077 INF: X Motor: Moving to 68.5950 mm @15.000 mm/sec, started at 68.0430 mm
17-02-28 19:43:05.994 -08 000000077 INF: X Motor: Xmit MA 3930\n
17-02-28 19:43:06.057 -08 000000077 INF: X Motor: Recv MA 3930\r\n>
17-02-28 19:43:06.057 -08 000000056 INF: Y Motor: Recv v 0\r
17-02-28 19:43:06.057 -08 000000056 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:06.057 -08 000000077 INF: X Motor: WaitUntilStopped 60037
17-02-28 19:43:06.057 -08 000000056 INF: Y Motor: Set target position to 6776483 encoder counts
17-02-28 19:43:06.057 -08 000000056 INF: Y Motor: Xmit s r0xca 6776483\r
17-02-28 19:43:06.119 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:43:06.119 -08 000000056 INF: Y Motor: Start the move command
17-02-28 19:43:06.119 -08 000000056 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:06.183 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:43:06.183 -08 000000056 INF: Y Motor: WaitUntilStopped 60105
17-02-28 19:43:06.183 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:06.308 -08 000000056 INF: Y Motor: Unshifted Position: 6599535
17-02-28 19:43:06.358 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:06.485 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:06.495 -08 000000077 INF: X Motor: Xmit PR ER\n
17-02-28 19:43:06.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:06.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 12 of 40 seconds left===================
17-02-28 19:43:06.557 -08 000000077 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:43:06.557 -08 000000077 INF: X Motor: Moved to 68.5947 after 500 ms
17-02-28 19:43:06.557 -08 000000077 INF: ======================================
17-02-28 19:43:06.619 -08 000000056 INF: Y Motor: Unshifted Position: 6776484
17-02-28 19:43:06.619 -08 000000056 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:06.619 -08 000000056 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:06.682 -08 000000056 INF: Y Motor: Recv v 0\r
17-02-28 19:43:06.682 -08 000000056 INF: Y Motor: Moved to 72.7648 after 499 ms
17-02-28 19:43:06.682 -08 000000056 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:06.743 -08 000000056 INF: Y Motor: Recv v 4096\r
17-02-28 19:43:06.743 -08 000000056 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:06.743 -08 000000056 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:06.805 -08 000000056 INF: Y Motor: Recv v 0\r
17-02-28 19:43:06.805 -08 000000056 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:06.805 -08 000000056 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:06.870 -08 000000056 INF: Y Motor: Recv v 402653184\r
17-02-28 19:43:06.870 -08 000000056 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:43:06.870 -08 000000056 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:06.870 -08 000000056 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:06.932 -08 000000056 INF: Y Motor: Recv v 0\r
17-02-28 19:43:06.932 -08 000000056 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:06.932 -08 000000056 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:06.932 -08 000000056 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:06.994 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:43:06.994 -08 000000056 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:06.994 -08 000000056 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:07.056 -08 000000056 INF: Y Motor: Recv ok\r
17-02-28 19:43:07.056 -08 000000056 INF: ======================================
17-02-28 19:43:07.057 -08 000000054 INF: ===================Move X,Y===================
17-02-28 19:43:07.059 -08 000000054 INF: ======================================
17-02-28 19:43:07.060 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:43:07.061 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:07.061 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:43:07.061 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:43:07.118 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:43:07.118 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:43:07.178 -08 000000104 INF: FPGA: Recv ZFREQCL
17-02-28 19:43:07.178 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Reporting Motor Positions===================
17-02-28 19:43:07.178 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:07.178 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:07.240 -08 000000046 INF: FPGA: Recv TDIYERD 7276485
17-02-28 19:43:07.240 -08 000000042 INF: Before scan, Y encoder from FPGA = 7276485 counts (72.765 mm)
17-02-28 19:43:07.240 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:07.241 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:07.242 -08 000000060 INF: ===================TDI Scan Setup===================
17-02-28 19:43:07.242 -08 000000025 INF: ===================Set YMotor gains for scans===================
17-02-28 19:43:07.242 -08 000000025 INF: ======================================
17-02-28 19:43:07.242 -08 000000060 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:43:07.242 -08 000000060 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:43:07.302 -08 000000084 INF: FPGA: Recv ZSEL 
17-02-28 19:43:07.302 -08 000000060 INF: FPGA: Xmit ZDACW 23211\n
17-02-28 19:43:07.368 -08 000000074 INF: FPGA: Recv ZDACW 
17-02-28 19:43:07.368 -08 000000060 INF: ===================Initializing FPGA for Dither Focus===================
17-02-28 19:43:07.368 -08 000000060 INF: DEBUG: TDIScan after moving to initial positions: Z = -0.089 mm, Active = True
17-02-28 19:43:07.368 -08 000000060 INF: FPGA: Xmit ZSEL 1\n
17-02-28 19:43:07.427 -08 000000086 INF: FPGA: Recv ZSEL 
17-02-28 19:43:07.427 -08 000000060 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:43:07.427 -08 000000060 INF: ===================TDI Scan Setup===================
17-02-28 19:43:07.429 -08 000000060 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:43:07.429 -08 000000060 INF: ===================TDI Scan Setup===================
17-02-28 19:43:07.431 -08 000000060 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:07.431 -08 000000060 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:43:07.431 -08 000000060 INF: FPGA: Xmit TDIYPOS 7256483\n
17-02-28 19:43:07.492 -08 000000009 INF: FPGA: Recv TDIYPOS
17-02-28 19:43:07.492 -08 000000060 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:07.494 -08 000000060 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:43:07.494 -08 000000060 INF: FPGA: Xmit TDIYARM2 6144 1 1\n
17-02-28 19:43:07.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:07.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 11 of 40 seconds left===================
17-02-28 19:43:07.554 -08 000000087 INF: FPGA: Recv TDIYARM2
17-02-28 19:43:07.554 -08 000000060 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:07.555 -08 000000060 INF: ===================TDI Scan Setup===================
17-02-28 19:43:07.557 -08 000000060 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:43:07.557 -08 000000060 INF: ===================TDI Scan Setup===================
17-02-28 19:43:07.559 -08 000000060 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:07.559 -08 000000060 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:07.560 -08 000000060 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:07.957 -08 000000060 INF: Camera #0 AttachBuffer (imageDataPtr = 73819689008 imgPtr = 73819689008 , attachBufferNumFrames = 24 , frameSize = 1638400,
17-02-28 19:43:07.957 -08 000000060 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 6144
17-02-28 19:43:07.957 -08 000000060 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:07.972 -08 000000060 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:07.974 -08 000000060 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:07.975 -08 000000060 INF: ===================TDI Scan Setup===================
17-02-28 19:43:07.976 -08 000000060 INF: ======================================
17-02-28 19:43:07.977 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:07.978 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:07.978 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:07.979 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:07.979 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:07.980 -08 000000048 INF: ===================Move Excitation Filter 2 (Emissive) to 'OD1.0'===================
17-02-28 19:43:07.980 -08 000000046 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:43:07.980 -08 000000048 INF: Excitation Filter 2: Moving 'Emissive' to index 3 (OD1.0)
17-02-28 19:43:07.980 -08 000000048 INF: Excitation Filter 2: Moving to 135.0000 degrees
17-02-28 19:43:07.980 -08 000000048 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:43:07.981 -08 000000048 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:43:07.981 -08 000000046 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:43:07.981 -08 000000046 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:43:07.981 -08 000000046 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0673 ms
17-02-28 19:43:07.981 -08 000000046 INF: ======================================
17-02-28 19:43:08.363 -08 000000101 INF: FPGA: Recv EX2MV
17-02-28 19:43:08.363 -08 000000048 INF: Excitation Filter 2: Moved 107 steps in 382.346 ms
17-02-28 19:43:08.363 -08 000000048 INF: Excitation Filter 2: Moved to 135.2810 degrees (target was 135.0000) in 382.4433 ms
17-02-28 19:43:08.363 -08 000000048 INF: Excitation Filter 2: Moved 'Emissive' to index 3 (OD1.0) in 382.5152 ms
17-02-28 19:43:08.363 -08 000000048 INF: ======================================
17-02-28 19:43:08.364 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:08.366 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:08.367 -08 000000079 INF: ===================Camera TDI===================
17-02-28 19:43:08.367 -08 000000070 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:08.367 -08 000000084 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:08.367 -08 000000070 INF: Y Motor: Moving to 70.1419 mm @1.500 mm/sec, started at 72.7648 mm
17-02-28 19:43:08.367 -08 000000070 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:08.367 -08 000000070 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:08.368 -08 000000079 INF: ===================Camera TDI, Parallel===================
17-02-28 19:43:08.368 -08 000000084 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:43:08.368 -08 000000084 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:43:08.369 -08 000000088 INF: ===================Camera TDI===================
17-02-28 19:43:08.369 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:08.369 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:08.430 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:43:08.430 -08 000000070 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:08.430 -08 000000070 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:08.492 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:43:08.492 -08 000000070 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:08.519 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:08.519 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:08.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:08.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 10 of 40 seconds left===================
17-02-28 19:43:08.554 -08 000000070 INF: Y Motor: Recv v 0\r
17-02-28 19:43:08.554 -08 000000070 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:08.554 -08 000000070 INF: Y Motor: Set target position to 6514189 encoder counts
17-02-28 19:43:08.554 -08 000000070 INF: Y Motor: Xmit s r0xca 6514189\r
17-02-28 19:43:08.616 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:43:08.616 -08 000000070 INF: Y Motor: Start the move command
17-02-28 19:43:08.616 -08 000000070 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:08.669 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:08.669 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:08.678 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:43:08.678 -08 000000070 INF: Y Motor: WaitUntilStopped 61749
17-02-28 19:43:08.678 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:08.802 -08 000000070 INF: Y Motor: Unshifted Position: 6758460
17-02-28 19:43:08.819 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:08.819 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:08.852 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:08.969 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:08.969 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:08.969 -08 000000088 INF: ===================Camera #0 Frame #1===================
17-02-28 19:43:08.980 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:09.116 -08 000000070 INF: Y Motor: Unshifted Position: 6711304
17-02-28 19:43:09.122 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 1, frameCount = 2.
17-02-28 19:43:09.122 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 2
17-02-28 19:43:09.122 -08 000000088 INF: ===================Camera #0 Frame #2===================
17-02-28 19:43:09.166 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:09.275 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:09.275 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:09.275 -08 000000088 INF: ===================Camera #0 Frame #4===================
17-02-28 19:43:09.290 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:09.428 -08 000000070 INF: Y Motor: Unshifted Position: 6664508
17-02-28 19:43:09.431 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:09.431 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:09.431 -08 000000088 INF: ===================Camera #0 Frame #5===================
17-02-28 19:43:09.478 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:09.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:09.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 9 of 40 seconds left===================
17-02-28 19:43:09.584 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:09.584 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:09.584 -08 000000088 INF: ===================Camera #0 Frame #6===================
17-02-28 19:43:09.602 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:09.737 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 7, frameCount = 8.
17-02-28 19:43:09.737 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 8
17-02-28 19:43:09.737 -08 000000088 INF: ===================Camera #0 Frame #8===================
17-02-28 19:43:09.738 -08 000000070 INF: Y Motor: Unshifted Position: 6617958
17-02-28 19:43:09.788 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:09.894 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 8, frameCount = 9.
17-02-28 19:43:09.894 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 9
17-02-28 19:43:09.894 -08 000000088 INF: ===================Camera #0 Frame #9===================
17-02-28 19:43:09.916 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:10.047 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 9, frameCount = 10.
17-02-28 19:43:10.047 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 10
17-02-28 19:43:10.047 -08 000000088 INF: ===================Camera #0 Frame #10===================
17-02-28 19:43:10.052 -08 000000070 INF: Y Motor: Unshifted Position: 6570814
17-02-28 19:43:10.102 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:10.200 -08 000000088 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 11, frameCount = 12.
17-02-28 19:43:10.200 -08 000000088 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 12
17-02-28 19:43:10.200 -08 000000088 INF: ===================Camera #0 Frame #12===================
17-02-28 19:43:10.206 -08 000000088 INF: Camera complete - got 12 frames, processed 12 frames, expected 12 frames.
17-02-28 19:43:10.207 -08 000000088 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:10.226 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:10.235 -08 000000088 INF: Camera #0 ReleaseBuffer
17-02-28 19:43:10.235 -08 000000088 INF: ===================Camera TDI===================
17-02-28 19:43:10.236 -08 000000104 INF: FPGA: Recv TDIYWAIT
17-02-28 19:43:10.236 -08 000000084 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:10.238 -08 000000088 INF: ======================================
17-02-28 19:43:10.238 -08 000000084 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:43:10.239 -08 000000037 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:43:10.239 -08 000000037 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:43:10.239 -08 000000037 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:43:10.239 -08 000000037 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:43:10.239 -08 000000079 INF: ===================Camera TDI===================
17-02-28 19:43:10.239 -08 000000037 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:43:10.240 -08 000000079 INF: ======================================
17-02-28 19:43:10.362 -08 000000070 INF: Y Motor: Unshifted Position: 6524314
17-02-28 19:43:10.412 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:10.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:10.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 8 of 40 seconds left===================
17-02-28 19:43:10.549 -08 000000070 INF: Y Motor: Unshifted Position: 6514188
17-02-28 19:43:10.549 -08 000000070 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:10.549 -08 000000070 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:10.612 -08 000000027 INF: FPGA: Recv EX2MV
17-02-28 19:43:10.612 -08 000000037 INF: Excitation Filter 2: Moved -107 steps in 372.8221 ms
17-02-28 19:43:10.612 -08 000000037 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 372.9372 ms
17-02-28 19:43:10.612 -08 000000037 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 373.0088 ms
17-02-28 19:43:10.612 -08 000000037 INF: ======================================
17-02-28 19:43:10.614 -08 000000070 INF: Y Motor: Recv v 0\r
17-02-28 19:43:10.614 -08 000000070 INF: Y Motor: Moved to 70.1419 after 1936 ms
17-02-28 19:43:10.614 -08 000000084 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:10.614 -08 000000070 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:10.615 -08 000000084 INF: ======================================
17-02-28 19:43:10.676 -08 000000070 INF: Y Motor: Recv v 4097\r
17-02-28 19:43:10.676 -08 000000070 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:10.676 -08 000000070 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:10.738 -08 000000070 INF: Y Motor: Recv v 0\r
17-02-28 19:43:10.738 -08 000000070 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:10.738 -08 000000070 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:10.800 -08 000000070 INF: Y Motor: Recv v 134217728\r
17-02-28 19:43:10.800 -08 000000070 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:43:10.800 -08 000000070 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:10.800 -08 000000070 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:10.862 -08 000000070 INF: Y Motor: Recv v 0\r
17-02-28 19:43:10.862 -08 000000070 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:10.862 -08 000000070 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:10.862 -08 000000070 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:10.924 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:43:10.924 -08 000000070 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:10.924 -08 000000070 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:10.986 -08 000000070 INF: Y Motor: Recv ok\r
17-02-28 19:43:10.986 -08 000000070 INF: ======================================
17-02-28 19:43:10.987 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:10.988 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:10.989 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:10.990 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:43:11.046 -08 000000104 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:43:11.046 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:11.112 -08 000000009 INF: FPGA: Recv TDIYERD 7014190
17-02-28 19:43:11.112 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:43:11.173 -08 000000010 INF: FPGA: Recv ZADCR 23078
17-02-28 19:43:11.174 -08 000000042 INF: At scan end Y pos = 70.142 and Z pos = -0.089. Y moved -2.423 mm
17-02-28 19:43:11.174 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:43:11.233 -08 000000084 INF: FPGA: Recv TDIPULSES 6145
17-02-28 19:43:11.233 -08 000000042 INF: The FPGA sent 6144 triggers to the camera ; expected 6144
17-02-28 19:43:11.233 -08 000000042 INF: TDIScan finished after 5399.477 ms
17-02-28 19:43:11.233 -08 000000042 INF: Image[0]: Y should trigger at 72.565 mm, 2nd row was at 72.552 mm (error = -0.013 mm)
17-02-28 19:43:11.234 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:11.234 -08 000000042 INF: Z jump check: There were 0/6144 lines (retry if > 900) at which Delta Z >= 10 um; span = 1000 lines. Largest delta = 0.000 um
17-02-28 19:43:11.235 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:11.236 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:43:11.298 -08 000000069 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:43:11.299 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:11.299 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:11.300 -08 000000020 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:43:11.300 -08 000000099 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:43:11.300 -08 000000054 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:43:11.301 -08 000000054 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:43:11.301 -08 000000020 INF: ======================================
17-02-28 19:43:11.301 -08 000000054 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:43:11.301 -08 000000099 INF: ======================================
17-02-28 19:43:11.360 -08 000000054 INF: Y Motor: Recv ok\r
17-02-28 19:43:11.360 -08 000000054 INF: ======================================
17-02-28 19:43:11.361 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:11.362 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:11.363 -08 000000051 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:43:11.363 -08 000000051 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:43:11.424 -08 000000046 INF: FPGA: Recv ZSEL 
17-02-28 19:43:11.424 -08 000000051 INF: FPGA: Xmit ZDACW 23211\n
17-02-28 19:43:11.483 -08 000000084 INF: FPGA: Recv ZDACW 
17-02-28 19:43:11.483 -08 000000051 INF: ===================DitherPostSwathFocusCleanup, FPGA Bypass Data blocking===================
17-02-28 19:43:11.484 -08 000000051 INF: FPGA: Xmit TDIBB 0\n
17-02-28 19:43:11.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:11.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 7 of 40 seconds left===================
17-02-28 19:43:11.545 -08 000000063 INF: FPGA: Recv TDIBB
17-02-28 19:43:11.545 -08 000000051 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:43:11.546 -08 000000051 INF: ======================================
17-02-28 19:43:11.547 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:11.549 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:11.550 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, HandleImage(Emissive)===================
17-02-28 19:43:11.602 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:11.602 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:11.603 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:12.366 -08 000000042 INF: No fiducial detected. Move X 0.552mm and try AC scan again
17-02-28 19:43:12.366 -08 000000042 INF: BottomSurfaceZPositions[] was -0.0885434358285381, so used the BottomSurfaceZPositions[] (-0.0885434358285381).
17-02-28 19:43:12.367 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:12.367 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:12.367 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:12.368 -08 000000042 INF: Compensator: Remaining OutOfPath
17-02-28 19:43:12.368 -08 000000042 INF: Center of AC image X offset=0.000
17-02-28 19:43:12.368 -08 000000042 INF: Center of AC image Estimated: X=69.147, Y=71.505
17-02-28 19:43:12.368 -08 000000042 INF: Center of AC image at: X=69.147, Y=71.505
17-02-28 19:43:12.372 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:12.372 -08 000000042 INF: Transformed XStagePosition from 69.147 mm to 69.1469955444336 mm.
17-02-28 19:43:12.382 -08 000000042 INF: Transformed StartingYStagePosition from 72.764826965332 mm to 72.764826965332 mm.
17-02-28 19:43:12.382 -08 000000042 INF: Transformed StartingYStageITFPosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:43:12.382 -08 000000042 INF: Transformed TriggerYStagePosition from 72.564826965332 mm to 72.564826965332 mm.
17-02-28 19:43:12.384 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:12.385 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Populating image tags===================
17-02-28 19:43:12.385 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:12.385 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 6144, channels = Emissive, TDI Z = -88.5 um, section = A_1
17-02-28 19:43:12.385 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:43:12.386 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:43:12.387 -08 000000104 INF: ===================MoveEmissionFilters===================
17-02-28 19:43:12.387 -08 000000077 INF: ===================Move X,Y===================
17-02-28 19:43:12.387 -08 000000039 INF: ===================Move Z Motor===================
17-02-28 19:43:12.387 -08 000000039 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:12.387 -08 000000039 INF: ======================================
17-02-28 19:43:12.388 -08 000000063 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:43:12.388 -08 000000058 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:43:12.388 -08 000000079 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:43:12.388 -08 000000048 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:43:12.388 -08 000000077 INF: ===================Move X,Y, Parallel===================
17-02-28 19:43:12.388 -08 000000063 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:12.389 -08 000000058 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:43:12.389 -08 000000079 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:43:12.389 -08 000000087 INF: ===================Move X Motor without settling===================
17-02-28 19:43:12.389 -08 000000069 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:12.389 -08 000000048 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both', MoveEmissionFilterSet===================
17-02-28 19:43:12.389 -08 000000087 INF: X Motor: Xmit PR VM\n
17-02-28 19:43:12.389 -08 000000069 INF: Y Motor: Moving to 72.7648 mm @25.000 mm/sec, started at 70.1419 mm
17-02-28 19:43:12.389 -08 000000069 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:12.389 -08 000000069 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:12.389 -08 000000051 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:43:12.389 -08 000000101 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:43:12.390 -08 000000025 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:43:12.390 -08 000000083 INF: ===================Move Emission Filter 22(sim) to IntoPath===================
17-02-28 19:43:12.390 -08 000000050 INF: ===================Move Emission Filter 31(sim) to IntoPath===================
17-02-28 19:43:12.390 -08 000000056 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:43:12.390 -08 000000051 INF: ======================================
17-02-28 19:43:12.390 -08 000000086 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:43:12.390 -08 000000076 INF: ===================Move Emission Filter 42(sim) to IntoPath===================
17-02-28 19:43:12.390 -08 000000101 INF: ======================================
17-02-28 19:43:12.390 -08 000000086 INF: ======================================
17-02-28 19:43:12.391 -08 000000076 INF: ======================================
17-02-28 19:43:12.391 -08 000000083 INF: ======================================
17-02-28 19:43:12.391 -08 000000050 INF: ======================================
17-02-28 19:43:12.392 -08 000000058 INF: ===================Move EmissionFilterSet2(sim) ('EmissionFilterSet2(sim)') to 'Both'===================
17-02-28 19:43:12.392 -08 000000048 INF: ===================Move EmissionFilterSet4(sim) ('EmissionFilterSet4(sim)') to 'Both'===================
17-02-28 19:43:12.392 -08 000000025 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:43:12.393 -08 000000025 INF: ======================================
17-02-28 19:43:12.393 -08 000000056 INF: ======================================
17-02-28 19:43:12.393 -08 000000058 INF: ======================================
17-02-28 19:43:12.393 -08 000000048 INF: ======================================
17-02-28 19:43:12.394 -08 000000063 INF: ===================Move EmissionFilterSet1(sim) ('Emissive') to 'Bandpass2'===================
17-02-28 19:43:12.394 -08 000000079 INF: ===================Move EmissionFilterSet3(sim) ('EmissionFilterSet3(sim)') to 'Both'===================
17-02-28 19:43:12.395 -08 000000063 INF: ======================================
17-02-28 19:43:12.396 -08 000000079 INF: ======================================
17-02-28 19:43:12.397 -08 000000104 INF: ======================================
17-02-28 19:43:12.421 -08 000000087 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:43:12.421 -08 000000087 INF: X Motor: Xmit PR VI\n
17-02-28 19:43:12.483 -08 000000087 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:43:12.483 -08 000000087 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:43:12.483 -08 000000069 INF: Y Motor: Recv ok\r
17-02-28 19:43:12.483 -08 000000069 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:12.483 -08 000000069 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:12.483 -08 000000087 INF: X Motor: Moving to 69.1470 mm @15.000 mm/sec, started at 68.5947 mm
17-02-28 19:43:12.483 -08 000000087 INF: X Motor: Xmit MA 4156\n
17-02-28 19:43:12.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:12.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 6 of 40 seconds left===================
17-02-28 19:43:12.548 -08 000000087 INF: X Motor: Recv MA 4156\r\n>
17-02-28 19:43:12.548 -08 000000069 INF: Y Motor: Recv ok\r
17-02-28 19:43:12.548 -08 000000069 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:12.548 -08 000000087 INF: X Motor: WaitUntilStopped 60037
17-02-28 19:43:12.610 -08 000000069 INF: Y Motor: Recv v 0\r
17-02-28 19:43:12.610 -08 000000069 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:12.610 -08 000000069 INF: Y Motor: Set target position to 6776483 encoder counts
17-02-28 19:43:12.610 -08 000000069 INF: Y Motor: Xmit s r0xca 6776483\r
17-02-28 19:43:12.672 -08 000000069 INF: Y Motor: Recv ok\r
17-02-28 19:43:12.672 -08 000000069 INF: Y Motor: Start the move command
17-02-28 19:43:12.672 -08 000000069 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:12.734 -08 000000069 INF: Y Motor: Recv ok\r
17-02-28 19:43:12.734 -08 000000069 INF: Y Motor: WaitUntilStopped 60105
17-02-28 19:43:12.734 -08 000000069 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:12.858 -08 000000069 INF: Y Motor: Unshifted Position: 6595654
17-02-28 19:43:12.908 -08 000000069 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:12.986 -08 000000087 INF: X Motor: Xmit PR ER\n
17-02-28 19:43:13.036 -08 000000069 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:13.045 -08 000000087 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:43:13.045 -08 000000087 INF: X Motor: Moved to 69.1465 after 496 ms
17-02-28 19:43:13.045 -08 000000087 INF: ======================================
17-02-28 19:43:13.172 -08 000000069 INF: Y Motor: Unshifted Position: 6776483
17-02-28 19:43:13.172 -08 000000069 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:13.172 -08 000000069 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:13.235 -08 000000069 INF: Y Motor: Recv v 0\r
17-02-28 19:43:13.235 -08 000000069 INF: Y Motor: Moved to 72.7648 after 500 ms
17-02-28 19:43:13.235 -08 000000069 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:13.296 -08 000000069 INF: Y Motor: Recv v 4096\r
17-02-28 19:43:13.296 -08 000000069 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:13.296 -08 000000069 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:13.359 -08 000000069 INF: Y Motor: Recv v 0\r
17-02-28 19:43:13.359 -08 000000069 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:13.359 -08 000000069 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:13.419 -08 000000069 INF: Y Motor: Recv v 402653184\r
17-02-28 19:43:13.419 -08 000000069 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:43:13.419 -08 000000069 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:13.419 -08 000000069 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:13.484 -08 000000069 INF: Y Motor: Recv v 0\r
17-02-28 19:43:13.484 -08 000000069 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:13.484 -08 000000069 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:13.484 -08 000000069 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:13.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:13.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 5 of 40 seconds left===================
17-02-28 19:43:13.546 -08 000000069 INF: Y Motor: Recv ok\r
17-02-28 19:43:13.546 -08 000000069 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:13.546 -08 000000069 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:13.608 -08 000000069 INF: Y Motor: Recv ok\r
17-02-28 19:43:13.608 -08 000000069 INF: ======================================
17-02-28 19:43:13.609 -08 000000077 INF: ===================Move X,Y===================
17-02-28 19:43:13.610 -08 000000077 INF: ======================================
17-02-28 19:43:13.612 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Moving motors===================
17-02-28 19:43:13.613 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:13.613 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:43:13.613 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:43:13.670 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:43:13.670 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:43:13.730 -08 000000077 INF: FPGA: Recv ZFREQCL
17-02-28 19:43:13.730 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Reporting Motor Positions===================
17-02-28 19:43:13.730 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:13.731 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:13.792 -08 000000050 INF: FPGA: Recv TDIYERD 7276485
17-02-28 19:43:13.792 -08 000000042 INF: Before scan, Y encoder from FPGA = 7276485 counts (72.765 mm)
17-02-28 19:43:13.792 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:13.793 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:13.794 -08 000000056 INF: ===================TDI Scan Setup===================
17-02-28 19:43:13.794 -08 000000094 INF: ===================Set YMotor gains for scans===================
17-02-28 19:43:13.794 -08 000000094 INF: ======================================
17-02-28 19:43:13.795 -08 000000056 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:43:13.795 -08 000000056 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:43:13.854 -08 000000053 INF: FPGA: Recv ZSEL 
17-02-28 19:43:13.854 -08 000000056 INF: FPGA: Xmit ZDACW 23211\n
17-02-28 19:43:13.920 -08 000000027 INF: FPGA: Recv ZDACW 
17-02-28 19:43:13.920 -08 000000056 INF: ===================Initializing FPGA for Dither Focus===================
17-02-28 19:43:13.920 -08 000000056 INF: DEBUG: TDIScan after moving to initial positions: Z = -0.089 mm, Active = True
17-02-28 19:43:13.920 -08 000000056 INF: FPGA: Xmit ZSEL 1\n
17-02-28 19:43:13.979 -08 000000020 INF: FPGA: Recv ZSEL 
17-02-28 19:43:13.979 -08 000000056 INF: ===================TDI Scan Setup, DitherSwathPreFocus===================
17-02-28 19:43:13.979 -08 000000056 INF: ===================TDI Scan Setup===================
17-02-28 19:43:13.981 -08 000000056 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:43:13.981 -08 000000056 INF: ===================TDI Scan Setup===================
17-02-28 19:43:13.983 -08 000000056 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:13.984 -08 000000056 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:43:13.984 -08 000000056 INF: FPGA: Xmit TDIYPOS 7256483\n
17-02-28 19:43:14.041 -08 000000009 INF: FPGA: Recv TDIYPOS
17-02-28 19:43:14.041 -08 000000056 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:14.043 -08 000000056 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:43:14.043 -08 000000056 INF: FPGA: Xmit TDIYARM2 6144 1 1\n
17-02-28 19:43:14.106 -08 000000051 INF: FPGA: Recv TDIYARM2
17-02-28 19:43:14.106 -08 000000056 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:14.107 -08 000000056 INF: ===================TDI Scan Setup===================
17-02-28 19:43:14.109 -08 000000056 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:43:14.109 -08 000000056 INF: ===================TDI Scan Setup===================
17-02-28 19:43:14.111 -08 000000056 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:14.112 -08 000000056 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:14.112 -08 000000056 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:14.510 -08 000000056 INF: Camera #0 AttachBuffer (imageDataPtr = 73819689008 imgPtr = 73819689008 , attachBufferNumFrames = 24 , frameSize = 1638400,
17-02-28 19:43:14.510 -08 000000056 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 6144
17-02-28 19:43:14.510 -08 000000056 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:14.526 -08 000000056 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:14.528 -08 000000056 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:14.529 -08 000000056 INF: ===================TDI Scan Setup===================
17-02-28 19:43:14.530 -08 000000056 INF: ======================================
17-02-28 19:43:14.531 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:14.533 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:14.533 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:14.533 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:14.534 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:14.535 -08 000000054 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:43:14.535 -08 000000084 INF: ===================Move Excitation Filter 2 (Emissive) to 'OD1.0'===================
17-02-28 19:43:14.535 -08 000000054 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:43:14.535 -08 000000054 INF: Excitation Filter 1: Already at 0.0000 degrees
17-02-28 19:43:14.535 -08 000000054 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 0.0699 ms
17-02-28 19:43:14.535 -08 000000084 INF: Excitation Filter 2: Moving 'Emissive' to index 3 (OD1.0)
17-02-28 19:43:14.535 -08 000000084 INF: Excitation Filter 2: Moving to 135.0000 degrees
17-02-28 19:43:14.535 -08 000000084 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:43:14.535 -08 000000084 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:43:14.536 -08 000000054 INF: ======================================
17-02-28 19:43:14.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:14.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 4 of 40 seconds left===================
17-02-28 19:43:14.916 -08 000000046 INF: FPGA: Recv EX2MV
17-02-28 19:43:14.916 -08 000000084 INF: Excitation Filter 2: Moved 107 steps in 380.4364 ms
17-02-28 19:43:14.916 -08 000000084 INF: Excitation Filter 2: Moved to 135.2810 degrees (target was 135.0000) in 380.536 ms
17-02-28 19:43:14.916 -08 000000084 INF: Excitation Filter 2: Moved 'Emissive' to index 3 (OD1.0) in 380.6645 ms
17-02-28 19:43:14.916 -08 000000084 INF: ======================================
17-02-28 19:43:14.918 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:14.919 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:14.920 -08 000000079 INF: ===================Camera TDI===================
17-02-28 19:43:14.920 -08 000000094 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:14.920 -08 000000039 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:14.920 -08 000000039 INF: Y Motor: Moving to 70.1419 mm @1.500 mm/sec, started at 72.7648 mm
17-02-28 19:43:14.920 -08 000000039 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:14.921 -08 000000039 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:14.921 -08 000000079 INF: ===================Camera TDI, Parallel===================
17-02-28 19:43:14.921 -08 000000094 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:43:14.921 -08 000000094 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:43:14.922 -08 000000067 INF: ===================Camera TDI===================
17-02-28 19:43:14.922 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:14.922 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:14.980 -08 000000039 INF: Y Motor: Recv ok\r
17-02-28 19:43:14.980 -08 000000039 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:14.980 -08 000000039 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:15.042 -08 000000039 INF: Y Motor: Recv ok\r
17-02-28 19:43:15.042 -08 000000039 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:15.073 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:15.073 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:15.106 -08 000000039 INF: Y Motor: Recv v 0\r
17-02-28 19:43:15.106 -08 000000039 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:15.106 -08 000000039 INF: Y Motor: Set target position to 6514189 encoder counts
17-02-28 19:43:15.106 -08 000000039 INF: Y Motor: Xmit s r0xca 6514189\r
17-02-28 19:43:15.166 -08 000000039 INF: Y Motor: Recv ok\r
17-02-28 19:43:15.166 -08 000000039 INF: Y Motor: Start the move command
17-02-28 19:43:15.166 -08 000000039 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:15.223 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:15.223 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:15.231 -08 000000039 INF: Y Motor: Recv ok\r
17-02-28 19:43:15.231 -08 000000039 INF: Y Motor: WaitUntilStopped 61749
17-02-28 19:43:15.231 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:15.355 -08 000000039 INF: Y Motor: Unshifted Position: 6758012
17-02-28 19:43:15.373 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:15.373 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:15.405 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:15.523 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:15.523 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:15.523 -08 000000067 INF: ===================Camera #0 Frame #1===================
17-02-28 19:43:15.528 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:15.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:15.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 3 of 40 seconds left===================
17-02-28 19:43:15.667 -08 000000039 INF: Y Motor: Unshifted Position: 6711154
17-02-28 19:43:15.676 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:43:15.676 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:43:15.676 -08 000000067 INF: ===================Camera #0 Frame #3===================
17-02-28 19:43:15.717 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:15.832 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:15.832 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:15.832 -08 000000067 INF: ===================Camera #0 Frame #4===================
17-02-28 19:43:15.841 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:15.980 -08 000000039 INF: Y Motor: Unshifted Position: 6664656
17-02-28 19:43:15.985 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:15.985 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:15.985 -08 000000067 INF: ===================Camera #0 Frame #5===================
17-02-28 19:43:16.030 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:16.139 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:16.139 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:16.139 -08 000000067 INF: ===================Camera #0 Frame #6===================
17-02-28 19:43:16.155 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:16.291 -08 000000039 INF: Y Motor: Unshifted Position: 6617408
17-02-28 19:43:16.292 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 7, frameCount = 8.
17-02-28 19:43:16.292 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 8
17-02-28 19:43:16.292 -08 000000067 INF: ===================Camera #0 Frame #8===================
17-02-28 19:43:16.341 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:16.448 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 8, frameCount = 9.
17-02-28 19:43:16.448 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 9
17-02-28 19:43:16.448 -08 000000067 INF: ===================Camera #0 Frame #9===================
17-02-28 19:43:16.466 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:16.540 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:16.540 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 2 of 40 seconds left===================
17-02-28 19:43:16.602 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 9, frameCount = 10.
17-02-28 19:43:16.602 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 10
17-02-28 19:43:16.602 -08 000000067 INF: ===================Camera #0 Frame #10===================
17-02-28 19:43:16.605 -08 000000039 INF: Y Motor: Unshifted Position: 6571012
17-02-28 19:43:16.655 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:16.755 -08 000000067 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 11, frameCount = 12.
17-02-28 19:43:16.755 -08 000000067 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 12
17-02-28 19:43:16.755 -08 000000067 INF: ===================Camera #0 Frame #12===================
17-02-28 19:43:16.762 -08 000000067 INF: Camera complete - got 12 frames, processed 12 frames, expected 12 frames.
17-02-28 19:43:16.763 -08 000000067 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:16.779 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:16.789 -08 000000060 INF: FPGA: Recv TDIYWAIT
17-02-28 19:43:16.789 -08 000000094 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:16.790 -08 000000067 INF: Camera #0 ReleaseBuffer
17-02-28 19:43:16.790 -08 000000067 INF: ===================Camera TDI===================
17-02-28 19:43:16.791 -08 000000094 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:43:16.792 -08 000000067 INF: ======================================
17-02-28 19:43:16.792 -08 000000047 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:43:16.792 -08 000000047 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:43:16.792 -08 000000047 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:43:16.792 -08 000000047 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:43:16.792 -08 000000047 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:43:16.793 -08 000000079 INF: ===================Camera TDI===================
17-02-28 19:43:16.794 -08 000000079 INF: ======================================
17-02-28 19:43:16.915 -08 000000039 INF: Y Motor: Unshifted Position: 6524009
17-02-28 19:43:16.965 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:17.104 -08 000000039 INF: Y Motor: Unshifted Position: 6514189
17-02-28 19:43:17.104 -08 000000039 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:17.104 -08 000000039 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:17.164 -08 000000083 INF: FPGA: Recv EX2MV
17-02-28 19:43:17.164 -08 000000047 INF: Excitation Filter 2: Moved -107 steps in 371.9492 ms
17-02-28 19:43:17.164 -08 000000047 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 372.0507 ms
17-02-28 19:43:17.164 -08 000000047 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 372.1192 ms
17-02-28 19:43:17.164 -08 000000047 INF: ======================================
17-02-28 19:43:17.166 -08 000000039 INF: Y Motor: Recv v 0\r
17-02-28 19:43:17.166 -08 000000039 INF: Y Motor: Moved to 70.1419 after 1934 ms
17-02-28 19:43:17.166 -08 000000039 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:17.166 -08 000000094 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:17.167 -08 000000094 INF: ======================================
17-02-28 19:43:17.228 -08 000000039 INF: Y Motor: Recv v 4097\r
17-02-28 19:43:17.228 -08 000000039 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:17.228 -08 000000039 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:17.290 -08 000000039 INF: Y Motor: Recv v 0\r
17-02-28 19:43:17.290 -08 000000039 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:17.290 -08 000000039 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:17.352 -08 000000039 INF: Y Motor: Recv v 134217728\r
17-02-28 19:43:17.352 -08 000000039 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:43:17.352 -08 000000039 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:17.352 -08 000000039 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:17.414 -08 000000039 INF: Y Motor: Recv v 0\r
17-02-28 19:43:17.414 -08 000000039 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:17.414 -08 000000039 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:17.414 -08 000000039 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:17.476 -08 000000039 INF: Y Motor: Recv ok\r
17-02-28 19:43:17.476 -08 000000039 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:17.476 -08 000000039 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:17.540 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:17.540 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 1 of 40 seconds left===================
17-02-28 19:43:17.541 -08 000000039 INF: Y Motor: Recv ok\r
17-02-28 19:43:17.541 -08 000000039 INF: ======================================
17-02-28 19:43:17.542 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:17.543 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, Scanning===================
17-02-28 19:43:17.545 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:17.545 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:43:17.601 -08 000000064 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:43:17.601 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:17.663 -08 000000058 INF: FPGA: Recv TDIYERD 7014190
17-02-28 19:43:17.663 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:43:17.725 -08 000000053 INF: FPGA: Recv ZADCR 23076
17-02-28 19:43:17.725 -08 000000042 INF: At scan end Y pos = 70.142 and Z pos = -0.089. Y moved -2.423 mm
17-02-28 19:43:17.725 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:43:17.787 -08 000000104 INF: FPGA: Recv TDIPULSES 6145
17-02-28 19:43:17.787 -08 000000042 INF: The FPGA sent 6144 triggers to the camera ; expected 6144
17-02-28 19:43:17.787 -08 000000042 INF: TDIScan finished after 5414.2427 ms
17-02-28 19:43:17.787 -08 000000042 INF: Image[0]: Y should trigger at 72.565 mm, 2nd row was at 72.552 mm (error = -0.013 mm)
17-02-28 19:43:17.788 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:17.788 -08 000000042 INF: Z jump check: There were 0/6144 lines (retry if > 900) at which Delta Z >= 10 um; span = 1000 lines. Largest delta = 0.000 um
17-02-28 19:43:17.789 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:17.790 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:43:17.849 -08 000000054 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:43:17.849 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:17.850 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:17.851 -08 000000074 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:43:17.851 -08 000000039 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:43:17.851 -08 000000027 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:43:17.851 -08 000000074 INF: ======================================
17-02-28 19:43:17.852 -08 000000027 INF: ======================================
17-02-28 19:43:17.852 -08 000000039 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:43:17.852 -08 000000039 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:43:17.913 -08 000000039 INF: Y Motor: Recv ok\r
17-02-28 19:43:17.913 -08 000000039 INF: ======================================
17-02-28 19:43:17.914 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:17.915 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:17.916 -08 000000083 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:43:17.916 -08 000000083 INF: FPGA: Xmit ZSEL 0\n
17-02-28 19:43:17.973 -08 000000027 INF: FPGA: Recv ZSEL 
17-02-28 19:43:17.973 -08 000000083 INF: FPGA: Xmit ZDACW 23211\n
17-02-28 19:43:18.038 -08 000000104 INF: FPGA: Recv ZDACW 
17-02-28 19:43:18.039 -08 000000083 INF: ===================DitherPostSwathFocusCleanup, FPGA Bypass Data blocking===================
17-02-28 19:43:18.039 -08 000000083 INF: FPGA: Xmit TDIBB 0\n
17-02-28 19:43:18.100 -08 000000074 INF: FPGA: Recv TDIBB
17-02-28 19:43:18.100 -08 000000083 INF: ===================DitherPostSwathFocusCleanup===================
17-02-28 19:43:18.102 -08 000000083 INF: ======================================
17-02-28 19:43:18.103 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:18.104 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:18.105 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive, HandleImage(Emissive)===================
17-02-28 19:43:18.162 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning, Channels Emissive===================
17-02-28 19:43:18.162 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:18.163 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:18.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:18.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:18.539 -08 000000018 INF: WaitCommand(40000) end
17-02-28 19:43:18.539 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:18.540 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:18.540 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:18.598 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:43:18.598 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Selecting Reagent HIM (1)===================
17-02-28 19:43:18.598 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:18.598 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Opening shutoff valve===================
17-02-28 19:43:18.972 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:18.973 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:18.973 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:19.035 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:43:19.043 -08 000000018 INF: KloehnPump A (KLOEHNA): Pumping from 1, aspirate port PortB, aspiration rate 250, dispense rate 2500, volume 12, calling command "Pumping to Flowcell #1 pump index #0", State=Running, Depth=2, Children=0, Thread="Run", Parent="Incorporation", Type=SameThreadBlocking, solution delay 5000
17-02-28 19:43:19.135 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:43:19.224 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`0 (0x03)\r\n(0xFF)
17-02-28 19:43:19.224 -08 000000018 INF: Current Position of Pump is: 0
17-02-28 19:43:19.324 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1OR\r
17-02-28 19:43:19.410 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:19.510 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:19.599 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:19.640 -08 000000042 INF: Bottom surface alignment transform was calculated to be: 1.000 0.000 0.000 
0.000 1.000 0.000 
0.035 0.008 1.000 

17-02-28 19:43:19.640 -08 000000042 INF: Found auto-center fiducial(s) for Lane: 1 Surface: Bottom at inlet (69.225 mm,22.178 mm) and/or outlet (6.07 mm, 22.178 mm).
17-02-28 19:43:19.640 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:19.641 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:19.642 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Aligning===================
17-02-28 19:43:19.642 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface===================
17-02-28 19:43:19.642 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface===================
17-02-28 19:43:19.658 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:19.659 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:19.659 -08 000000042 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:43:19.659 -08 000000042 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:43:19.724 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:43:19.724 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:19.724 -08 000000042 INF: Compensator: Remaining OutOfPath
17-02-28 19:43:19.730 -08 000000042 INF: Transformed XStagePosition from 69.18564 mm to 69.1856384277344 mm.
17-02-28 19:43:19.739 -08 000000042 INF: Transformed StartingYStagePosition from 40.4930030822754 mm to 40.4930030822754 mm.
17-02-28 19:43:19.739 -08 000000042 INF: Transformed StartingYStageITFPosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:19.739 -08 000000042 INF: Transformed TriggerYStagePosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:19.739 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:19.739 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:19.742 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:43:19.743 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:43:19.743 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:43:19.784 -08 000000010 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:19.784 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:19.785 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:19.785 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.0885 mm
17-02-28 19:43:19.785 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:43:19.847 -08 000000050 INF: FPGA: Recv ZTRG 
17-02-28 19:43:19.847 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:43:19.849 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:19.908 -08 000000035 INF: FPGA: Recv ZYT 
17-02-28 19:43:19.908 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:43:19.908 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:43:19.909 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:43:19.973 -08 000000064 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:43:19.973 -08 000000064 INF: FPGA: Recv ZMV 
17-02-28 19:43:19.973 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:43:19.974 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 65.4353 ms
17-02-28 19:43:19.974 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:43:20.009 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V10000A0R\r
17-02-28 19:43:20.032 -08 000000088 INF: FPGA: Recv ZDACR 60292
17-02-28 19:43:20.032 -08 000000042 INF: Z Motor: MoveAndTrigger took 247.1677 ms w/comms
17-02-28 19:43:20.032 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:20.032 -08 000000042 INF: Z Motor: MoveAbsStepped took 247.2988 ms
17-02-28 19:43:20.032 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:20.033 -08 000000042 INF: Transformed XStagePosition from 69.18564 mm to 69.1856384277344 mm.
17-02-28 19:43:20.042 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:20.042 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:20.042 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:20.042 -08 000000042 INF: Z Motor: Set Z velocity to 0.312 mm/s / 401506 16.16 format
17-02-28 19:43:20.042 -08 000000042 INF: FPGA: Xmit ZSTEP 401506\n
17-02-28 19:43:20.097 -08 000000079 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:20.098 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:20.098 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:20.098 -08 000000042 INF: Transformed XStagePosition from 69.18564 mm to 69.1856384277344 mm.
17-02-28 19:43:20.107 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:20.107 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:20.107 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:20.109 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:20.109 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Populating image tags===================
17-02-28 19:43:20.109 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:20.109 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 3072, channels = A, G, T, C, TDI Z = -230.0 um, section = A_1
17-02-28 19:43:20.110 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:20.110 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:20.111 -08 000000099 INF: ===================MoveEmissionFilters===================
17-02-28 19:43:20.111 -08 000000035 INF: ===================Move X,Y===================
17-02-28 19:43:20.112 -08 000000009 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:20.112 -08 000000035 INF: ===================Move X,Y, Parallel===================
17-02-28 19:43:20.112 -08 000000069 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:20.112 -08 000000074 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:20.112 -08 000000010 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:20.113 -08 000000009 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:20.113 -08 000000048 INF: ===================Move X Motor without settling===================
17-02-28 19:43:20.113 -08 000000088 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:20.113 -08 000000048 INF: X Motor: Xmit PR VM\n
17-02-28 19:43:20.113 -08 000000074 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:20.113 -08 000000088 INF: Y Motor: Moving to 64.5335 mm @25.000 mm/sec, started at 70.1419 mm
17-02-28 19:43:20.113 -08 000000069 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:20.113 -08 000000088 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:20.113 -08 000000088 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:20.113 -08 000000010 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:20.114 -08 000000051 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:43:20.114 -08 000000037 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:43:20.114 -08 000000037 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:43:20.114 -08 000000065 INF: ===================Move Emission Filter 22(sim) to OutOfPath===================
17-02-28 19:43:20.114 -08 000000070 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:43:20.114 -08 000000023 INF: ===================Move Emission Filter 31(sim) to OutOfPath===================
17-02-28 19:43:20.114 -08 000000037 INF: ======================================
17-02-28 19:43:20.114 -08 000000076 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:43:20.114 -08 000000060 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:43:20.114 -08 000000051 INF: ======================================
17-02-28 19:43:20.114 -08 000000058 INF: ===================Move Emission Filter 42(sim) to OutOfPath===================
17-02-28 19:43:20.115 -08 000000060 INF: ======================================
17-02-28 19:43:20.115 -08 000000058 INF: ======================================
17-02-28 19:43:20.115 -08 000000070 INF: ======================================
17-02-28 19:43:20.116 -08 000000023 INF: ======================================
17-02-28 19:43:20.116 -08 000000009 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:20.117 -08 000000069 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:20.117 -08 000000009 INF: ======================================
17-02-28 19:43:20.117 -08 000000065 INF: ======================================
17-02-28 19:43:20.118 -08 000000076 INF: ======================================
17-02-28 19:43:20.118 -08 000000069 INF: ======================================
17-02-28 19:43:20.119 -08 000000074 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:20.119 -08 000000010 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:20.120 -08 000000074 INF: ======================================
17-02-28 19:43:20.120 -08 000000010 INF: ======================================
17-02-28 19:43:20.121 -08 000000099 INF: ======================================
17-02-28 19:43:20.161 -08 000000088 INF: Y Motor: Recv ok\r
17-02-28 19:43:20.161 -08 000000088 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:20.161 -08 000000088 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:20.161 -08 000000048 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:43:20.161 -08 000000048 INF: X Motor: Xmit PR VI\n
17-02-28 19:43:20.198 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:20.223 -08 000000048 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:43:20.223 -08 000000048 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:43:20.223 -08 000000088 INF: Y Motor: Recv ok\r
17-02-28 19:43:20.223 -08 000000088 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:20.223 -08 000000048 INF: X Motor: Moving to 69.1856 mm @15.000 mm/sec, started at 69.1465 mm
17-02-28 19:43:20.223 -08 000000048 INF: X Motor: Xmit MA 4172\n
17-02-28 19:43:20.284 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:43:20.284 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Aspirating port PortB===================
17-02-28 19:43:20.285 -08 000000048 INF: X Motor: Recv MA 4172\r\n>
17-02-28 19:43:20.285 -08 000000088 INF: Y Motor: Recv v 0\r
17-02-28 19:43:20.285 -08 000000088 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:20.285 -08 000000048 INF: X Motor: WaitUntilStopped 60003
17-02-28 19:43:20.285 -08 000000088 INF: Y Motor: Set target position to 5953351 encoder counts
17-02-28 19:43:20.285 -08 000000088 INF: Y Motor: Xmit s r0xca 5953351\r
17-02-28 19:43:20.348 -08 000000088 INF: Y Motor: Recv ok\r
17-02-28 19:43:20.348 -08 000000088 INF: Y Motor: Start the move command
17-02-28 19:43:20.348 -08 000000088 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:20.384 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V800IP2304R\r
17-02-28 19:43:20.411 -08 000000088 INF: Y Motor: Recv ok\r
17-02-28 19:43:20.411 -08 000000088 INF: Y Motor: WaitUntilStopped 60224
17-02-28 19:43:20.411 -08 000000088 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:20.471 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:20.534 -08 000000088 INF: Y Motor: Unshifted Position: 6432685
17-02-28 19:43:20.571 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:20.584 -08 000000088 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:20.596 -08 000000048 INF: X Motor: Xmit PR ER\n
17-02-28 19:43:20.657 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:20.658 -08 000000048 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:43:20.658 -08 000000048 INF: X Motor: Moved to 69.1855 after 373 ms
17-02-28 19:43:20.658 -08 000000048 INF: ======================================
17-02-28 19:43:20.708 -08 000000088 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:20.848 -08 000000088 INF: Y Motor: Unshifted Position: 5959184
17-02-28 19:43:20.898 -08 000000088 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:20.907 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:20.969 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:21.035 -08 000000088 INF: Y Motor: Unshifted Position: 5953349
17-02-28 19:43:21.035 -08 000000088 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:21.035 -08 000000088 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:21.096 -08 000000088 INF: Y Motor: Recv v 0\r
17-02-28 19:43:21.096 -08 000000088 INF: Y Motor: Moved to 64.5335 after 685 ms
17-02-28 19:43:21.096 -08 000000088 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:21.158 -08 000000088 INF: Y Motor: Recv v 4097\r
17-02-28 19:43:21.158 -08 000000088 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:21.158 -08 000000088 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:21.219 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:21.220 -08 000000088 INF: Y Motor: Recv v 0\r
17-02-28 19:43:21.220 -08 000000088 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:21.220 -08 000000088 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:21.283 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:21.284 -08 000000088 INF: Y Motor: Recv v 402653184\r
17-02-28 19:43:21.284 -08 000000088 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:43:21.284 -08 000000088 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:21.284 -08 000000088 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:21.346 -08 000000088 INF: Y Motor: Recv v 0\r
17-02-28 19:43:21.346 -08 000000088 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:21.346 -08 000000088 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:21.346 -08 000000088 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:21.409 -08 000000088 INF: Y Motor: Recv ok\r
17-02-28 19:43:21.409 -08 000000088 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:21.409 -08 000000088 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:21.472 -08 000000088 INF: Y Motor: Recv ok\r
17-02-28 19:43:21.472 -08 000000088 INF: ======================================
17-02-28 19:43:21.473 -08 000000035 INF: ===================Move X,Y===================
17-02-28 19:43:21.474 -08 000000035 INF: ======================================
17-02-28 19:43:21.475 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:21.476 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:21.477 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:43:21.477 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:43:21.533 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:21.534 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:43:21.534 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:43:21.594 -08 000000093 INF: FPGA: Recv ZFREQCL
17-02-28 19:43:21.594 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Reporting Motor Positions===================
17-02-28 19:43:21.594 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:21.594 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:21.595 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:21.656 -08 000000101 INF: FPGA: Recv TDIYERD 6453352
17-02-28 19:43:21.656 -08 000000042 INF: Before scan, Y encoder from FPGA = 6453352 counts (64.534 mm)
17-02-28 19:43:21.656 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:21.657 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:21.657 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:21.657 -08 000000087 INF: ===================Set YMotor gains for scans===================
17-02-28 19:43:21.658 -08 000000087 INF: ======================================
17-02-28 19:43:21.658 -08 000000099 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:43:21.658 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:21.660 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:21.661 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:43:21.661 -08 000000099 INF: FPGA: Xmit TDIYPOS 6433351\n
17-02-28 19:43:21.717 -08 000000035 INF: FPGA: Recv TDIYPOS
17-02-28 19:43:21.717 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:21.719 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:43:21.719 -08 000000099 INF: FPGA: Xmit TDIYARM2 3072 1 1\n
17-02-28 19:43:21.782 -08 000000083 INF: FPGA: Recv TDIYARM2
17-02-28 19:43:21.782 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:21.783 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:21.785 -08 000000099 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:43:21.785 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:21.786 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:21.787 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:21.788 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:21.845 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:21.906 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:22.156 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:22.161 -08 000000099 INF: Camera #0 AttachBuffer (imageDataPtr = 74572887352 imgPtr = 74572887352 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:22.161 -08 000000099 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:22.161 -08 000000099 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:22.176 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:22.178 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:22.217 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:22.467 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:22.531 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:22.556 -08 000000099 INF: Camera #2 AttachBuffer (imageDataPtr = 75511411392 imgPtr = 74774213944 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:22.556 -08 000000099 INF: CameraArmTDI CameraBaseSensorPath: 2 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:22.556 -08 000000099 INF: CameraArmTDI CameraBaseSensorPath: 2... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:22.572 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:22.573 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:22.574 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:22.576 -08 000000099 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:22.576 -08 000000099 INF: ===================TDI Scan Setup, Serial, Delay Next Z Move Until Y===================
17-02-28 19:43:22.577 -08 000000099 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:22.578 -08 000000099 INF: ===================TDI Scan Setup, Serial, Arm Z Motor===================
17-02-28 19:43:22.578 -08 000000099 INF: Z Motor: Entering ArmAbsStepped
17-02-28 19:43:22.579 -08 000000099 INF: Z Motor: Arming to move to -0.0100 mm
17-02-28 19:43:22.579 -08 000000099 INF: FPGA: Xmit ZYT 0 2\n
17-02-28 19:43:22.592 -08 000000094 INF: FPGA: Recv ZYT 
17-02-28 19:43:22.592 -08 000000099 INF: Z Motor: ZARM will arm Z motor and start the ramp when first camera image trigger pulse is sent (past camera clearing lines)
17-02-28 19:43:22.592 -08 000000099 INF: FPGA: Xmit ZARM 2621\n
17-02-28 19:43:22.654 -08 000000101 INF: FPGA: Recv ZARM
17-02-28 19:43:22.654 -08 000000099 INF: Z Motor: ArmAndSetTriggerMode 'ZARM' command took 61.9385 ms
17-02-28 19:43:22.654 -08 000000099 INF: Z Motor: ArmAbsStepped took 75.2973 ms
17-02-28 19:43:22.654 -08 000000099 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:22.655 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:22.656 -08 000000099 INF: ======================================
17-02-28 19:43:22.658 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:22.658 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:22.659 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:22.659 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:22.660 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:22.660 -08 000000060 INF: ===================Move Excitation Filter 2 (A) to 'OD0.2'===================
17-02-28 19:43:22.661 -08 000000047 INF: ===================Move Excitation Filter 1 (G) to 'OD0.2'===================
17-02-28 19:43:22.661 -08 000000060 INF: Excitation Filter 2: Moving 'A' to index 5 (OD0.2)
17-02-28 19:43:22.661 -08 000000060 INF: Excitation Filter 2: Moving to 225.0000 degrees
17-02-28 19:43:22.661 -08 000000060 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:43:22.661 -08 000000060 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:43:22.661 -08 000000047 INF: Excitation Filter 1: Moving 'G' to index 5 (OD0.2)
17-02-28 19:43:22.661 -08 000000047 INF: Excitation Filter 1: Moving to 225.0000 degrees
17-02-28 19:43:22.661 -08 000000047 INF: Excitation Filter 1: Moving -107 steps
17-02-28 19:43:22.662 -08 000000047 INF: FPGA: Xmit EX1MV -107\n
17-02-28 19:43:22.781 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:22.845 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:23.027 -08 000000104 INF: FPGA: Recv EX2MV
17-02-28 19:43:23.027 -08 000000104 INF: FPGA: Recv EX1MV
17-02-28 19:43:23.027 -08 000000047 INF: Excitation Filter 1: Moved -107 steps in 365.93 ms
17-02-28 19:43:23.027 -08 000000047 INF: Excitation Filter 1: Moved to 224.7190 degrees (target was 225.0000) in 366.0224 ms
17-02-28 19:43:23.027 -08 000000047 INF: Excitation Filter 1: Moved 'G' to index 5 (OD0.2) in 366.1266 ms
17-02-28 19:43:23.027 -08 000000060 INF: Excitation Filter 2: Moved -107 steps in 366.1524 ms
17-02-28 19:43:23.027 -08 000000060 INF: Excitation Filter 2: Moved to 224.7190 degrees (target was 225.0000) in 366.349 ms
17-02-28 19:43:23.027 -08 000000060 INF: Excitation Filter 2: Moved 'A' to index 5 (OD0.2) in 366.4155 ms
17-02-28 19:43:23.027 -08 000000047 INF: ======================================
17-02-28 19:43:23.027 -08 000000060 INF: ======================================
17-02-28 19:43:23.028 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:23.030 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:23.031 -08 000000054 INF: ===================Serial===================
17-02-28 19:43:23.031 -08 000000063 INF: ===================Camera TDI===================
17-02-28 19:43:23.031 -08 000000084 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:23.031 -08 000000084 INF: Y Motor: Moving to 62.9704 mm @1.500 mm/sec, started at 64.5335 mm
17-02-28 19:43:23.031 -08 000000070 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:23.031 -08 000000084 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:23.031 -08 000000084 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:23.031 -08 000000054 INF: ===================Serial, FPGA Z Wait===================
17-02-28 19:43:23.031 -08 000000054 INF: FPGA: Xmit ZWAIT\n
17-02-28 19:43:23.031 -08 000000063 INF: ===================Camera TDI, Parallel===================
17-02-28 19:43:23.032 -08 000000070 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:43:23.032 -08 000000087 INF: ===================Camera TDI===================
17-02-28 19:43:23.032 -08 000000037 INF: ===================Camera TDI===================
17-02-28 19:43:23.033 -08 000000037 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:23.033 -08 000000037 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:23.034 -08 000000087 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:23.034 -08 000000087 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:23.036 -08 000000070 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:43:23.095 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:43:23.095 -08 000000084 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:23.095 -08 000000084 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:23.095 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:23.156 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:43:23.156 -08 000000084 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:23.156 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:23.183 -08 000000037 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:23.183 -08 000000037 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:23.184 -08 000000087 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:23.184 -08 000000087 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:23.219 -08 000000084 INF: Y Motor: Recv v 0\r
17-02-28 19:43:23.219 -08 000000084 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:23.219 -08 000000084 INF: Y Motor: Set target position to 5797042 encoder counts
17-02-28 19:43:23.219 -08 000000084 INF: Y Motor: Xmit s r0xca 5797042\r
17-02-28 19:43:23.282 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:43:23.282 -08 000000084 INF: Y Motor: Start the move command
17-02-28 19:43:23.282 -08 000000084 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:23.333 -08 000000037 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:23.333 -08 000000037 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:23.334 -08 000000087 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:23.334 -08 000000087 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:23.343 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:43:23.343 -08 000000084 INF: Y Motor: WaitUntilStopped 61042
17-02-28 19:43:23.343 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:23.406 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:23.465 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:23.466 -08 000000084 INF: Y Motor: Unshifted Position: 5935424
17-02-28 19:43:23.483 -08 000000037 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:23.483 -08 000000037 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:23.484 -08 000000087 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:23.484 -08 000000087 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:23.516 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:23.633 -08 000000037 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:23.633 -08 000000037 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:23.633 -08 000000037 INF: ===================Camera #2 Frame #1===================
17-02-28 19:43:23.634 -08 000000087 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:23.634 -08 000000087 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:23.634 -08 000000087 INF: ===================Camera #0 Frame #1===================
17-02-28 19:43:23.641 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:23.715 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:23.779 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:23.780 -08 000000084 INF: Y Motor: Unshifted Position: 5888480
17-02-28 19:43:23.787 -08 000000037 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 1, frameCount = 2.
17-02-28 19:43:23.787 -08 000000037 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 2
17-02-28 19:43:23.787 -08 000000037 INF: ===================Camera #2 Frame #2===================
17-02-28 19:43:23.788 -08 000000087 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 1, frameCount = 2.
17-02-28 19:43:23.788 -08 000000087 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 2
17-02-28 19:43:23.788 -08 000000087 INF: ===================Camera #0 Frame #2===================
17-02-28 19:43:23.830 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:23.941 -08 000000037 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:23.941 -08 000000037 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:23.941 -08 000000037 INF: ===================Camera #2 Frame #4===================
17-02-28 19:43:23.942 -08 000000087 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:23.942 -08 000000087 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:23.942 -08 000000087 INF: ===================Camera #0 Frame #4===================
17-02-28 19:43:23.953 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:24.029 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:24.089 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:24.090 -08 000000084 INF: Y Motor: Unshifted Position: 5841922
17-02-28 19:43:24.098 -08 000000037 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:24.098 -08 000000037 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:24.098 -08 000000037 INF: ===================Camera #2 Frame #5===================
17-02-28 19:43:24.099 -08 000000087 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:24.099 -08 000000087 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:24.099 -08 000000087 INF: ===================Camera #0 Frame #5===================
17-02-28 19:43:24.140 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:24.152 -08 000000060 INF: FPGA: Recv ZWAIT 
17-02-28 19:43:24.152 -08 000000060 INF: FPGA: Recv TDIYWAIT
17-02-28 19:43:24.152 -08 000000070 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:24.152 -08 000000054 INF: ===================Serial===================
17-02-28 19:43:24.154 -08 000000070 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:43:24.154 -08 000000054 INF: ===================Serial, Confirm position Z Motor===================
17-02-28 19:43:24.154 -08 000000054 INF: ===================Serial===================
17-02-28 19:43:24.155 -08 000000064 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:43:24.155 -08 000000093 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:43:24.155 -08 000000064 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:43:24.155 -08 000000064 INF: Excitation Filter 1: Moving to 0.0000 degrees
17-02-28 19:43:24.155 -08 000000064 INF: Excitation Filter 1: Moving 107 steps
17-02-28 19:43:24.155 -08 000000093 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:43:24.155 -08 000000064 INF: FPGA: Xmit EX1MV 107\n
17-02-28 19:43:24.155 -08 000000093 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:43:24.155 -08 000000093 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:43:24.155 -08 000000054 INF: ======================================
17-02-28 19:43:24.158 -08 000000093 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:43:24.251 -08 000000037 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:24.251 -08 000000037 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:24.251 -08 000000037 INF: ===================Camera #2 Frame #6===================
17-02-28 19:43:24.253 -08 000000087 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:24.253 -08 000000087 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:24.253 -08 000000087 INF: ===================Camera #0 Frame #6===================
17-02-28 19:43:24.254 -08 000000037 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:24.255 -08 000000037 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:24.256 -08 000000087 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:24.257 -08 000000087 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:24.266 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:24.279 -08 000000037 INF: Camera #2 ReleaseBuffer
17-02-28 19:43:24.279 -08 000000037 INF: ===================Camera TDI===================
17-02-28 19:43:24.281 -08 000000037 INF: ======================================
17-02-28 19:43:24.303 -08 000000087 INF: Camera #0 ReleaseBuffer
17-02-28 19:43:24.303 -08 000000087 INF: ===================Camera TDI===================
17-02-28 19:43:24.304 -08 000000087 INF: ======================================
17-02-28 19:43:24.306 -08 000000063 INF: ===================Camera TDI===================
17-02-28 19:43:24.307 -08 000000063 INF: ======================================
17-02-28 19:43:24.339 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:24.401 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:24.402 -08 000000084 INF: Y Motor: Unshifted Position: 5797070
17-02-28 19:43:24.452 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:24.527 -08 000000086 INF: FPGA: Recv EX1MV
17-02-28 19:43:24.527 -08 000000086 INF: FPGA: Recv EX2MV
17-02-28 19:43:24.527 -08 000000093 INF: Excitation Filter 2: Moved 107 steps in 371.6177 ms
17-02-28 19:43:24.527 -08 000000093 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 371.7492 ms
17-02-28 19:43:24.527 -08 000000093 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 371.8526 ms
17-02-28 19:43:24.527 -08 000000064 INF: Excitation Filter 1: Moved 107 steps in 371.8272 ms
17-02-28 19:43:24.527 -08 000000064 INF: Excitation Filter 1: Moved to 0.0000 degrees (target was 0.0000) in 372.0264 ms
17-02-28 19:43:24.527 -08 000000064 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 372.0955 ms
17-02-28 19:43:24.527 -08 000000093 INF: ======================================
17-02-28 19:43:24.527 -08 000000064 INF: ======================================
17-02-28 19:43:24.529 -08 000000070 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:24.530 -08 000000070 INF: ======================================
17-02-28 19:43:24.589 -08 000000084 INF: Y Motor: Unshifted Position: 5797041
17-02-28 19:43:24.589 -08 000000084 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:24.589 -08 000000084 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:24.651 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:24.655 -08 000000084 INF: Y Motor: Recv v 0\r
17-02-28 19:43:24.655 -08 000000084 INF: Y Motor: Moved to 62.9704 after 1312 ms
17-02-28 19:43:24.655 -08 000000084 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:24.713 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:43:24.713 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:24.713 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:24.714 -08 000000018 INF: WaitCommand(5000) start
17-02-28 19:43:24.714 -08 000000084 INF: Y Motor: Recv v 4097\r
17-02-28 19:43:24.714 -08 000000084 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:24.714 -08 000000084 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:24.714 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 5 of 5 seconds left===================
17-02-28 19:43:24.779 -08 000000084 INF: Y Motor: Recv v 0\r
17-02-28 19:43:24.779 -08 000000084 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:24.779 -08 000000084 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:24.841 -08 000000084 INF: Y Motor: Recv v 134217728\r
17-02-28 19:43:24.841 -08 000000084 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:43:24.841 -08 000000084 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:24.841 -08 000000084 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:24.903 -08 000000084 INF: Y Motor: Recv v 0\r
17-02-28 19:43:24.903 -08 000000084 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:24.903 -08 000000084 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:24.903 -08 000000084 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:24.966 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:43:24.966 -08 000000084 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:24.966 -08 000000084 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:25.027 -08 000000084 INF: Y Motor: Recv ok\r
17-02-28 19:43:25.027 -08 000000084 INF: ======================================
17-02-28 19:43:25.028 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:25.029 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:25.030 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:25.030 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:43:25.087 -08 000000025 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:43:25.087 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:25.149 -08 000000079 INF: FPGA: Recv TDIYERD 6297044
17-02-28 19:43:25.149 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:43:25.211 -08 000000076 INF: FPGA: Recv ZADCR 2424
17-02-28 19:43:25.211 -08 000000042 INF: At scan end Y pos = 62.970 and Z pos = -0.010. Y moved -1.363 mm
17-02-28 19:43:25.211 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:43:25.277 -08 000000084 INF: FPGA: Recv TDIPULSES 3073
17-02-28 19:43:25.277 -08 000000042 INF: The FPGA sent 3072 triggers to the camera ; expected 3072
17-02-28 19:43:25.277 -08 000000042 INF: TDIScan finished after 5179.3152 ms
17-02-28 19:43:25.277 -08 000000042 INF: Image[0]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:25.277 -08 000000042 INF: Image[2]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:25.277 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:43:25.336 -08 000000074 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:43:25.337 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:25.337 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:25.338 -08 000000101 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:43:25.338 -08 000000086 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:43:25.338 -08 000000035 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:43:25.338 -08 000000086 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:43:25.338 -08 000000086 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:43:25.338 -08 000000101 INF: ======================================
17-02-28 19:43:25.339 -08 000000035 INF: ======================================
17-02-28 19:43:25.370 -08 000000067 INF: RunCopyService queue size at 2/28/2017 7:43:25 PM is 2
17-02-28 19:43:25.402 -08 000000086 INF: Y Motor: Recv ok\r
17-02-28 19:43:25.402 -08 000000086 INF: ======================================
17-02-28 19:43:25.403 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:25.404 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:25.405 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(A)===================
17-02-28 19:43:25.906 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:25.906 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 4 of 5 seconds left===================
17-02-28 19:43:25.923 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:25.924 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(G)===================
17-02-28 19:43:25.948 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:25.948 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(T)===================
17-02-28 19:43:25.974 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:25.974 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(C)===================
17-02-28 19:43:26.008 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:26.009 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:26.009 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:26.010 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, ETF: Extracting coords===================
17-02-28 19:43:26.018 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:26.018 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:26.018 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point, Extracting metrics===================
17-02-28 19:43:26.711 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:26.734 -08 000000042 INF: ETF for image Index#0: Best Z position at bottom surface = -0.0912165073892874Best Z position at top surface = -0.164563106796116Best Z position at top surface + compensator offset = -0.141863106796116 C:1,L:1,T
17-02-28 19:43:26.734 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 0 is -0.164563106796116
17-02-28 19:43:26.734 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 0 is 63.99866
17-02-28 19:43:26.734 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 1 is -0.0912165073892874
17-02-28 19:43:26.734 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 1 is 63.64574
17-02-28 19:43:26.735 -08 000000042 INF: Z-height at LaneTopSurface is -0.164563106796116.
17-02-28 19:43:26.735 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:26.907 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:26.907 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 3 of 5 seconds left===================
17-02-28 19:43:27.005 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:43:27.005 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:43:27.024 -08 000000010 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:27.024 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:27.026 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:27.026 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:27.027 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:27.028 -08 000000037 INF: ===================Move Tilt Motor 1===================
17-02-28 19:43:27.028 -08 000000058 INF: ===================Move Tilt Motor 2===================
17-02-28 19:43:27.028 -08 000000076 INF: ===================Move Tilt Motor 3===================
17-02-28 19:43:27.028 -08 000000037 INF: Tilt Motor 1: Moving to 5.0681 mm, started at 4.9990 mm, delta = 0.0691 mm
17-02-28 19:43:27.028 -08 000000037 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:27.028 -08 000000058 INF: Tilt Motor 2: Moving to 5.2783 mm, started at 5.3939 mm, delta = -0.1157 mm
17-02-28 19:43:27.028 -08 000000076 INF: Tilt Motor 3: Moving to 5.2252 mm, started at 5.3406 mm, delta = -0.1154 mm
17-02-28 19:43:27.034 -08 000000076 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:27.036 -08 000000058 INF: FPGA: Xmit T2RD\n
17-02-28 19:43:27.086 -08 000000101 INF: FPGA: Recv T1RD 19680
17-02-28 19:43:27.086 -08 000000101 INF: FPGA: Recv T3RD 21025
17-02-28 19:43:27.086 -08 000000101 INF: FPGA: Recv T2RD 21236
17-02-28 19:43:27.086 -08 000000058 INF: Tilt Motor 2: Encoder: at motor step 3539 + 2/6
17-02-28 19:43:27.086 -08 000000058 INF: Tilt Motor 2: Moving to 20781 encoder counts
17-02-28 19:43:27.086 -08 000000076 INF: Tilt Motor 3: Encoder: at motor step 3504 + 1/6
17-02-28 19:43:27.086 -08 000000076 INF: Tilt Motor 3: Moving to 20572 encoder counts
17-02-28 19:43:27.086 -08 000000058 INF: FPGA: Xmit T2MOVETO 20781\n
17-02-28 19:43:27.086 -08 000000037 INF: Tilt Motor 1: Encoder: at motor step 3280 + 0/6
17-02-28 19:43:27.086 -08 000000037 INF: Tilt Motor 1: Moving to 19953 encoder counts
17-02-28 19:43:27.087 -08 000000076 INF: FPGA: Xmit T3MOVETO 20572\n
17-02-28 19:43:27.089 -08 000000037 INF: FPGA: Xmit T1MOVETO 19953\n
17-02-28 19:43:27.272 -08 000000039 INF: FPGA: Recv T1MOVETO 45
17-02-28 19:43:27.272 -08 000000037 INF: Tilt Motor 1: To move from 4.999 to 5.068 (0.069 mm) should take 46 steps, but required 45 steps (0.069 mm). Slippage = -0.002 mm (-0.02%)
17-02-28 19:43:27.272 -08 000000037 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:27.334 -08 000000065 INF: FPGA: Recv T2MOVETO 75
17-02-28 19:43:27.334 -08 000000065 INF: FPGA: Recv T3MOVETO 75
17-02-28 19:43:27.334 -08 000000065 INF: FPGA: Recv T1RD 19949
17-02-28 19:43:27.334 -08 000000037 INF: Tilt Motor 1: Encoder: at motor step 3324 + 5/6
17-02-28 19:43:27.334 -08 000000076 INF: Tilt Motor 3: To move from 5.340 to 5.225 (-0.115 mm) should take 76 steps, but required 75 steps (0.114 mm). Slippage = -0.002 mm (0.01%)
17-02-28 19:43:27.334 -08 000000037 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:27.334 -08 000000058 INF: Tilt Motor 2: To move from 5.394 to 5.278 (-0.116 mm) should take 76 steps, but required 75 steps (0.114 mm). Slippage = -0.002 mm (0.01%)
17-02-28 19:43:27.335 -08 000000076 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:27.337 -08 000000058 INF: FPGA: Xmit T2RD\n
17-02-28 19:43:27.396 -08 000000099 INF: FPGA: Recv T1RD 19949
17-02-28 19:43:27.396 -08 000000099 INF: FPGA: Recv T3RD 20578
17-02-28 19:43:27.396 -08 000000099 INF: FPGA: Recv T2RD 20786
17-02-28 19:43:27.396 -08 000000076 INF: Tilt Motor 3: Encoder: at motor step 3429 + 4/6
17-02-28 19:43:27.396 -08 000000037 INF: Tilt Motor 1: Encoder: at motor step 3324 + 5/6
17-02-28 19:43:27.396 -08 000000076 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:27.396 -08 000000058 INF: Tilt Motor 2: Encoder: at motor step 3464 + 2/6
17-02-28 19:43:27.399 -08 000000037 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:27.400 -08 000000058 INF: FPGA: Xmit T2RD\n
17-02-28 19:43:27.462 -08 000000104 INF: FPGA: Recv T3RD 20578
17-02-28 19:43:27.462 -08 000000104 INF: FPGA: Recv T1RD 19949
17-02-28 19:43:27.462 -08 000000104 INF: FPGA: Recv T2RD 20786
17-02-28 19:43:27.462 -08 000000058 INF: Tilt Motor 2: Encoder: at motor step 3464 + 2/6
17-02-28 19:43:27.462 -08 000000076 INF: Tilt Motor 3: Encoder: at motor step 3429 + 4/6
17-02-28 19:43:27.462 -08 000000058 INF: FPGA: Xmit T2RD\n
17-02-28 19:43:27.462 -08 000000037 INF: Tilt Motor 1: Encoder: at motor step 3324 + 5/6
17-02-28 19:43:27.462 -08 000000037 INF: Tilt Motor 1: After move to 5.0681, error = -0.0010, min/max error = -0.0013/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:27.462 -08 000000037 INF: Tilt Motor 1: Moved to 5.0670 after 434.539 ms
17-02-28 19:43:27.462 -08 000000037 INF: ======================================
17-02-28 19:43:27.463 -08 000000076 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:27.521 -08 000000054 INF: FPGA: Recv T2RD 20786
17-02-28 19:43:27.521 -08 000000054 INF: FPGA: Recv T3RD 20578
17-02-28 19:43:27.521 -08 000000076 INF: Tilt Motor 3: Encoder: at motor step 3429 + 4/6
17-02-28 19:43:27.521 -08 000000076 INF: Tilt Motor 3: After move to 5.2252, error = 0.0016, min/max error = -0.0017/0.0016, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:27.521 -08 000000058 INF: Tilt Motor 2: Encoder: at motor step 3464 + 2/6
17-02-28 19:43:27.521 -08 000000076 INF: Tilt Motor 3: Moved to 5.2268 after 493.0511 ms
17-02-28 19:43:27.521 -08 000000058 INF: Tilt Motor 2: After move to 5.2783, error = 0.0014, min/max error = -0.0016/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:27.521 -08 000000058 INF: Tilt Motor 2: Moved to 5.2796 after 493.2731 ms
17-02-28 19:43:27.521 -08 000000076 INF: ======================================
17-02-28 19:43:27.521 -08 000000058 INF: ======================================
17-02-28 19:43:27.522 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:27.523 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:27.524 -08 000000042 INF: Lane 1 was flagged for detilt operations. Moved to tilt positions: m1=5.06807630637511, m2=5.27829391550132, m3=5.22520791550132
17-02-28 19:43:27.524 -08 000000042 INF: ETF Best Z: -0.1418631 mm (37188 DAC)
17-02-28 19:43:27.530 -08 000000042 INF: Transformed XStagePosition from 71.95064 mm to 71.9506378173828 mm.
17-02-28 19:43:27.538 -08 000000042 INF: Transformed StartingYStagePosition from 40.4930030822754 mm to 40.4930030822754 mm.
17-02-28 19:43:27.538 -08 000000042 INF: Transformed StartingYStageITFPosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:27.538 -08 000000042 INF: Transformed TriggerYStagePosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:27.538 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:27.539 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:27.542 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:43:27.542 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:43:27.542 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:43:27.583 -08 000000047 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:27.583 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:27.583 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:27.583 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.0100 mm
17-02-28 19:43:27.583 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:43:27.648 -08 000000086 INF: FPGA: Recv ZTRG 
17-02-28 19:43:27.648 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:43:27.710 -08 000000093 INF: FPGA: Recv ZYT 
17-02-28 19:43:27.710 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:43:27.710 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:43:27.772 -08 000000077 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:43:27.772 -08 000000077 INF: FPGA: Recv ZMV 
17-02-28 19:43:27.772 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:43:27.772 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 62.0557 ms
17-02-28 19:43:27.772 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:43:27.834 -08 000000063 INF: FPGA: Recv ZDACR 60292
17-02-28 19:43:27.834 -08 000000042 INF: Z Motor: MoveAndTrigger took 250.4268 ms w/comms
17-02-28 19:43:27.834 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:27.834 -08 000000042 INF: Z Motor: MoveAbsStepped took 250.585 ms
17-02-28 19:43:27.834 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:27.835 -08 000000042 INF: Transformed XStagePosition from 71.95064 mm to 71.9506378173828 mm.
17-02-28 19:43:27.844 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:27.844 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:27.844 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:27.844 -08 000000042 INF: Z Motor: Set Z velocity to 0.312 mm/s / 401506 16.16 format
17-02-28 19:43:27.844 -08 000000042 INF: FPGA: Xmit ZSTEP 401506\n
17-02-28 19:43:27.896 -08 000000058 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:27.896 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:27.897 -08 000000042 INF: Transformed XStagePosition from 71.95064 mm to 71.9506378173828 mm.
17-02-28 19:43:27.907 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:27.907 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 2 of 5 seconds left===================
17-02-28 19:43:27.908 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:27.908 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:27.908 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:27.910 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:27.910 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Populating image tags===================
17-02-28 19:43:27.910 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:27.910 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 3072, channels = A, G, T, C, TDI Z = -230.0 um, section = B_1
17-02-28 19:43:27.911 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:27.912 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:27.912 -08 000000094 INF: ===================MoveEmissionFilters===================
17-02-28 19:43:27.912 -08 000000088 INF: ===================Move X,Y===================
17-02-28 19:43:27.913 -08 000000093 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:27.913 -08 000000088 INF: ===================Move X,Y, Parallel===================
17-02-28 19:43:27.913 -08 000000037 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:27.913 -08 000000050 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:27.913 -08 000000084 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:27.914 -08 000000093 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:27.914 -08 000000047 INF: ===================Move X Motor without settling===================
17-02-28 19:43:27.914 -08 000000050 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:27.914 -08 000000064 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:27.914 -08 000000047 INF: X Motor: Xmit PR VM\n
17-02-28 19:43:27.914 -08 000000084 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:27.915 -08 000000063 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:43:27.915 -08 000000027 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:43:27.915 -08 000000037 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:27.915 -08 000000063 INF: ======================================
17-02-28 19:43:27.915 -08 000000054 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:43:27.915 -08 000000027 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:43:27.915 -08 000000051 INF: ===================Move Emission Filter 22(sim) to OutOfPath===================
17-02-28 19:43:27.915 -08 000000077 INF: ===================Move Emission Filter 42(sim) to OutOfPath===================
17-02-28 19:43:27.916 -08 000000087 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:43:27.916 -08 000000051 INF: ======================================
17-02-28 19:43:27.916 -08 000000065 INF: ===================Move Emission Filter 31(sim) to OutOfPath===================
17-02-28 19:43:27.916 -08 000000020 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:43:27.916 -08 000000077 INF: ======================================
17-02-28 19:43:27.916 -08 000000065 INF: ======================================
17-02-28 19:43:27.916 -08 000000027 INF: ======================================
17-02-28 19:43:27.917 -08 000000054 INF: ======================================
17-02-28 19:43:27.917 -08 000000064 INF: Y Motor: Moving to 64.5335 mm @25.000 mm/sec, started at 62.9704 mm
17-02-28 19:43:27.917 -08 000000064 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:27.917 -08 000000064 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:27.917 -08 000000087 INF: ======================================
17-02-28 19:43:27.918 -08 000000093 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:27.918 -08 000000050 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:27.919 -08 000000084 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:27.919 -08 000000020 INF: ======================================
17-02-28 19:43:27.919 -08 000000093 INF: ======================================
17-02-28 19:43:27.919 -08 000000050 INF: ======================================
17-02-28 19:43:27.920 -08 000000084 INF: ======================================
17-02-28 19:43:27.920 -08 000000037 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:27.922 -08 000000037 INF: ======================================
17-02-28 19:43:27.923 -08 000000094 INF: ======================================
17-02-28 19:43:27.960 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:27.960 -08 000000064 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:27.960 -08 000000064 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:27.960 -08 000000047 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:43:27.960 -08 000000047 INF: X Motor: Xmit PR VI\n
17-02-28 19:43:28.022 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:28.022 -08 000000064 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:28.022 -08 000000047 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:43:28.022 -08 000000047 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:43:28.022 -08 000000047 INF: X Motor: Moving to 71.9506 mm @15.000 mm/sec, started at 69.1855 mm
17-02-28 19:43:28.022 -08 000000047 INF: X Motor: Xmit MA 5305\n
17-02-28 19:43:28.088 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:43:28.088 -08 000000064 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:28.088 -08 000000047 INF: X Motor: Recv MA 5305\r\n>
17-02-28 19:43:28.088 -08 000000064 INF: Y Motor: Set target position to 5953351 encoder counts
17-02-28 19:43:28.088 -08 000000064 INF: Y Motor: Xmit s r0xca 5953351\r
17-02-28 19:43:28.088 -08 000000047 INF: X Motor: WaitUntilStopped 60184
17-02-28 19:43:28.147 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:28.147 -08 000000064 INF: Y Motor: Start the move command
17-02-28 19:43:28.147 -08 000000064 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:28.210 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:28.210 -08 000000064 INF: Y Motor: WaitUntilStopped 60063
17-02-28 19:43:28.210 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:28.336 -08 000000064 INF: Y Motor: Unshifted Position: 5881739
17-02-28 19:43:28.386 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:28.511 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:28.646 -08 000000064 INF: Y Motor: Unshifted Position: 5953348
17-02-28 19:43:28.646 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:28.646 -08 000000064 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:28.712 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:43:28.712 -08 000000064 INF: Y Motor: Moved to 64.5335 after 502 ms
17-02-28 19:43:28.712 -08 000000064 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:28.771 -08 000000064 INF: Y Motor: Recv v 4096\r
17-02-28 19:43:28.771 -08 000000064 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:28.771 -08 000000064 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:28.833 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:43:28.833 -08 000000064 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:28.833 -08 000000064 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:28.833 -08 000000047 INF: X Motor: Xmit PR ER\n
17-02-28 19:43:28.898 -08 000000064 INF: Y Motor: Recv v 402653184\r
17-02-28 19:43:28.898 -08 000000064 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:43:28.898 -08 000000064 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:28.898 -08 000000064 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:28.898 -08 000000047 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:43:28.898 -08 000000047 INF: X Motor: Moved to 71.9517 after 810 ms
17-02-28 19:43:28.898 -08 000000047 INF: ======================================
17-02-28 19:43:28.907 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:28.907 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Delay 1 of 5 seconds left===================
17-02-28 19:43:28.958 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:43:28.958 -08 000000064 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:28.958 -08 000000064 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:28.958 -08 000000064 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:29.024 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:29.024 -08 000000064 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:29.024 -08 000000064 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:29.083 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:29.083 -08 000000064 INF: ======================================
17-02-28 19:43:29.084 -08 000000088 INF: ===================Move X,Y===================
17-02-28 19:43:29.085 -08 000000088 INF: ======================================
17-02-28 19:43:29.086 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:29.087 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:29.088 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:43:29.088 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:43:29.145 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:43:29.145 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:43:29.208 -08 000000051 INF: FPGA: Recv ZFREQCL
17-02-28 19:43:29.209 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Reporting Motor Positions===================
17-02-28 19:43:29.209 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:29.209 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:29.270 -08 000000037 INF: FPGA: Recv TDIYERD 6453352
17-02-28 19:43:29.270 -08 000000042 INF: Before scan, Y encoder from FPGA = 6453352 counts (64.534 mm)
17-02-28 19:43:29.270 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:29.271 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:29.271 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:43:29.272 -08 000000084 INF: ===================Set YMotor gains for scans===================
17-02-28 19:43:29.272 -08 000000084 INF: ======================================
17-02-28 19:43:29.272 -08 000000088 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:43:29.272 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:43:29.274 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:29.275 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:43:29.275 -08 000000088 INF: FPGA: Xmit TDIYPOS 6433351\n
17-02-28 19:43:29.332 -08 000000048 INF: FPGA: Recv TDIYPOS
17-02-28 19:43:29.332 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:29.334 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:43:29.334 -08 000000088 INF: FPGA: Xmit TDIYARM2 3072 1 1\n
17-02-28 19:43:29.394 -08 000000064 INF: FPGA: Recv TDIYARM2
17-02-28 19:43:29.394 -08 000000088 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:29.395 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:43:29.397 -08 000000088 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:43:29.397 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:43:29.398 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:29.399 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:29.400 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:29.715 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:29.715 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:29.715 -08 000000018 INF: WaitCommand(5000) end
17-02-28 19:43:29.715 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:29.765 -08 000000088 INF: Camera #0 AttachBuffer (imageDataPtr = 74572887352 imgPtr = 74572887352 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:29.765 -08 000000088 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:29.765 -08 000000088 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:29.781 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:29.783 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:29.814 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:43:29.895 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`2304 (0x03)\r\n(0xFF)
17-02-28 19:43:29.895 -08 000000018 INF: Current Position of Pump is: 2304
17-02-28 19:43:29.995 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1?\r
17-02-28 19:43:30.083 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`2304 (0x03)\r\n(0xFF)
17-02-28 19:43:30.083 -08 000000018 INF: Current Position of Pump is: 2304
17-02-28 19:43:30.083 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1), Dispensing port PortC===================
17-02-28 19:43:30.151 -08 000000088 INF: Camera #2 AttachBuffer (imageDataPtr = 75511411392 imgPtr = 74774213944 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:30.151 -08 000000088 INF: CameraArmTDI CameraBaseSensorPath: 2 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:30.151 -08 000000088 INF: CameraArmTDI CameraBaseSensorPath: 2... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:30.166 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:30.167 -08 000000088 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:30.169 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:43:30.170 -08 000000088 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:30.171 -08 000000088 INF: ===================TDI Scan Setup, Serial, Delay Next Z Move Until Y===================
17-02-28 19:43:30.171 -08 000000088 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:30.173 -08 000000088 INF: ===================TDI Scan Setup, Serial, Arm Z Motor===================
17-02-28 19:43:30.173 -08 000000088 INF: Z Motor: Entering ArmAbsStepped
17-02-28 19:43:30.173 -08 000000088 INF: Z Motor: Arming to move to -0.0100 mm
17-02-28 19:43:30.173 -08 000000088 INF: FPGA: Xmit ZYT 0 2\n
17-02-28 19:43:30.183 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1V8000OD2304R\r
17-02-28 19:43:30.204 -08 000000025 INF: FPGA: Recv ZYT 
17-02-28 19:43:30.204 -08 000000088 INF: Z Motor: ZARM will arm Z motor and start the ramp when first camera image trigger pulse is sent (past camera clearing lines)
17-02-28 19:43:30.204 -08 000000088 INF: FPGA: Xmit ZARM 2621\n
17-02-28 19:43:30.270 -08 000000037 INF: FPGA: Recv ZARM
17-02-28 19:43:30.270 -08 000000088 INF: Z Motor: ArmAndSetTriggerMode 'ZARM' command took 65.955 ms
17-02-28 19:43:30.270 -08 000000088 INF: Z Motor: ArmAbsStepped took 97.1055 ms
17-02-28 19:43:30.270 -08 000000088 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:30.271 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:30.271 -08 000000088 INF: ===================TDI Scan Setup===================
17-02-28 19:43:30.272 -08 000000088 INF: ======================================
17-02-28 19:43:30.273 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:30.274 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:30.274 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:30.275 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:30.276 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:30.276 -08 000000047 INF: ===================Move Excitation Filter 2 (A) to 'OD0.2'===================
17-02-28 19:43:30.276 -08 000000010 INF: ===================Move Excitation Filter 1 (G) to 'OD0.2'===================
17-02-28 19:43:30.276 -08 000000047 INF: Excitation Filter 2: Moving 'A' to index 5 (OD0.2)
17-02-28 19:43:30.276 -08 000000047 INF: Excitation Filter 2: Moving to 225.0000 degrees
17-02-28 19:43:30.276 -08 000000010 INF: Excitation Filter 1: Moving 'G' to index 5 (OD0.2)
17-02-28 19:43:30.277 -08 000000047 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:43:30.277 -08 000000010 INF: Excitation Filter 1: Moving to 225.0000 degrees
17-02-28 19:43:30.277 -08 000000010 INF: Excitation Filter 1: Moving -107 steps
17-02-28 19:43:30.277 -08 000000047 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:43:30.278 -08 000000010 INF: FPGA: Xmit EX1MV -107\n
17-02-28 19:43:30.371 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:30.456 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:30.641 -08 000000039 INF: FPGA: Recv EX2MV
17-02-28 19:43:30.641 -08 000000039 INF: FPGA: Recv EX1MV
17-02-28 19:43:30.641 -08 000000010 INF: Excitation Filter 1: Moved -107 steps in 364.2014 ms
17-02-28 19:43:30.641 -08 000000047 INF: Excitation Filter 2: Moved -107 steps in 364.374 ms
17-02-28 19:43:30.641 -08 000000047 INF: Excitation Filter 2: Moved to 224.7190 degrees (target was 225.0000) in 364.4736 ms
17-02-28 19:43:30.641 -08 000000047 INF: Excitation Filter 2: Moved 'A' to index 5 (OD0.2) in 364.5645 ms
17-02-28 19:43:30.641 -08 000000010 INF: Excitation Filter 1: Moved to 224.7190 degrees (target was 225.0000) in 364.3467 ms
17-02-28 19:43:30.641 -08 000000010 INF: Excitation Filter 1: Moved 'G' to index 5 (OD0.2) in 364.7279 ms
17-02-28 19:43:30.641 -08 000000047 INF: ======================================
17-02-28 19:43:30.641 -08 000000010 INF: ======================================
17-02-28 19:43:30.642 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:30.644 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:30.644 -08 000000054 INF: ===================Serial===================
17-02-28 19:43:30.645 -08 000000027 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:30.645 -08 000000087 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:30.645 -08 000000070 INF: ===================Camera TDI===================
17-02-28 19:43:30.645 -08 000000087 INF: Y Motor: Moving to 62.9704 mm @1.500 mm/sec, started at 64.5335 mm
17-02-28 19:43:30.645 -08 000000087 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:30.645 -08 000000087 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:30.645 -08 000000054 INF: ===================Serial, FPGA Z Wait===================
17-02-28 19:43:30.645 -08 000000054 INF: FPGA: Xmit ZWAIT\n
17-02-28 19:43:30.645 -08 000000027 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:43:30.646 -08 000000070 INF: ===================Camera TDI, Parallel===================
17-02-28 19:43:30.647 -08 000000101 INF: ===================Camera TDI===================
17-02-28 19:43:30.647 -08 000000060 INF: ===================Camera TDI===================
17-02-28 19:43:30.648 -08 000000060 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:30.648 -08 000000060 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:30.648 -08 000000027 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:43:30.648 -08 000000101 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:30.648 -08 000000101 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:30.705 -08 000000087 INF: Y Motor: Recv ok\r
17-02-28 19:43:30.705 -08 000000087 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:30.705 -08 000000087 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:30.706 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:30.769 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:30.770 -08 000000087 INF: Y Motor: Recv ok\r
17-02-28 19:43:30.770 -08 000000087 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:30.798 -08 000000060 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:30.798 -08 000000060 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:30.799 -08 000000101 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:30.799 -08 000000101 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:30.832 -08 000000087 INF: Y Motor: Recv v 0\r
17-02-28 19:43:30.832 -08 000000087 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:30.832 -08 000000087 INF: Y Motor: Set target position to 5797042 encoder counts
17-02-28 19:43:30.832 -08 000000087 INF: Y Motor: Xmit s r0xca 5797042\r
17-02-28 19:43:30.894 -08 000000087 INF: Y Motor: Recv ok\r
17-02-28 19:43:30.894 -08 000000087 INF: Y Motor: Start the move command
17-02-28 19:43:30.894 -08 000000087 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:30.948 -08 000000060 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:30.948 -08 000000060 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:30.949 -08 000000101 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:30.949 -08 000000101 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:30.956 -08 000000087 INF: Y Motor: Recv ok\r
17-02-28 19:43:30.956 -08 000000087 INF: Y Motor: WaitUntilStopped 61042
17-02-28 19:43:30.956 -08 000000087 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:31.019 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:31.080 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:43:31.080 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Pumping Reagent HIM (1)===================
17-02-28 19:43:31.080 -08 000000018 INF: KloehnPump A (KLOEHNA): Waiting 1000 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-02-28 19:43:31.081 -08 000000087 INF: Y Motor: Unshifted Position: 5935180
17-02-28 19:43:31.098 -08 000000060 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:31.098 -08 000000060 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:31.099 -08 000000101 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:31.099 -08 000000101 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:31.131 -08 000000087 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:31.248 -08 000000060 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:31.248 -08 000000060 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:31.248 -08 000000060 INF: ===================Camera #2 Frame #1===================
17-02-28 19:43:31.249 -08 000000101 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:31.249 -08 000000101 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:31.249 -08 000000101 INF: ===================Camera #0 Frame #1===================
17-02-28 19:43:31.256 -08 000000087 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:31.394 -08 000000087 INF: Y Motor: Unshifted Position: 5888677
17-02-28 19:43:31.402 -08 000000101 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:43:31.402 -08 000000060 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:43:31.402 -08 000000060 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:43:31.402 -08 000000101 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:43:31.402 -08 000000060 INF: ===================Camera #2 Frame #3===================
17-02-28 19:43:31.402 -08 000000101 INF: ===================Camera #0 Frame #3===================
17-02-28 19:43:31.444 -08 000000087 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:31.559 -08 000000060 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:31.559 -08 000000101 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:31.559 -08 000000060 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:31.559 -08 000000101 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:31.559 -08 000000101 INF: ===================Camera #0 Frame #4===================
17-02-28 19:43:31.559 -08 000000060 INF: ===================Camera #2 Frame #4===================
17-02-28 19:43:31.568 -08 000000087 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:31.706 -08 000000087 INF: Y Motor: Unshifted Position: 5841669
17-02-28 19:43:31.712 -08 000000101 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:31.712 -08 000000101 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:31.712 -08 000000101 INF: ===================Camera #0 Frame #5===================
17-02-28 19:43:31.713 -08 000000060 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:31.713 -08 000000060 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:31.713 -08 000000060 INF: ===================Camera #2 Frame #5===================
17-02-28 19:43:31.756 -08 000000087 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:31.764 -08 000000077 INF: FPGA: Recv ZWAIT 
17-02-28 19:43:31.764 -08 000000077 INF: FPGA: Recv TDIYWAIT
17-02-28 19:43:31.764 -08 000000054 INF: ===================Serial===================
17-02-28 19:43:31.764 -08 000000027 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:31.766 -08 000000054 INF: ===================Serial, Confirm position Z Motor===================
17-02-28 19:43:31.766 -08 000000027 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:43:31.766 -08 000000054 INF: ===================Serial===================
17-02-28 19:43:31.767 -08 000000009 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:43:31.767 -08 000000083 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:43:31.767 -08 000000009 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:43:31.767 -08 000000009 INF: Excitation Filter 1: Moving to 0.0000 degrees
17-02-28 19:43:31.767 -08 000000009 INF: Excitation Filter 1: Moving 107 steps
17-02-28 19:43:31.767 -08 000000083 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:43:31.767 -08 000000009 INF: FPGA: Xmit EX1MV 107\n
17-02-28 19:43:31.767 -08 000000083 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:43:31.767 -08 000000083 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:43:31.768 -08 000000054 INF: ======================================
17-02-28 19:43:31.768 -08 000000083 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:43:31.865 -08 000000101 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:31.865 -08 000000101 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:31.865 -08 000000101 INF: ===================Camera #0 Frame #6===================
17-02-28 19:43:31.866 -08 000000060 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:31.866 -08 000000060 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:31.866 -08 000000060 INF: ===================Camera #2 Frame #6===================
17-02-28 19:43:31.868 -08 000000101 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:31.869 -08 000000101 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:31.869 -08 000000060 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:31.870 -08 000000060 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:31.878 -08 000000087 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:31.893 -08 000000101 INF: Camera #0 ReleaseBuffer
17-02-28 19:43:31.893 -08 000000101 INF: ===================Camera TDI===================
17-02-28 19:43:31.894 -08 000000101 INF: ======================================
17-02-28 19:43:31.917 -08 000000060 INF: Camera #2 ReleaseBuffer
17-02-28 19:43:31.917 -08 000000060 INF: ===================Camera TDI===================
17-02-28 19:43:31.918 -08 000000060 INF: ======================================
17-02-28 19:43:31.920 -08 000000070 INF: ===================Camera TDI===================
17-02-28 19:43:31.921 -08 000000070 INF: ======================================
17-02-28 19:43:32.018 -08 000000087 INF: Y Motor: Unshifted Position: 5797067
17-02-28 19:43:32.068 -08 000000087 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:32.140 -08 000000070 INF: FPGA: Recv EX1MV
17-02-28 19:43:32.140 -08 000000070 INF: FPGA: Recv EX2MV
17-02-28 19:43:32.140 -08 000000083 INF: Excitation Filter 2: Moved 107 steps in 372.4746 ms
17-02-28 19:43:32.140 -08 000000009 INF: Excitation Filter 1: Moved 107 steps in 372.6863 ms
17-02-28 19:43:32.140 -08 000000009 INF: Excitation Filter 1: Moved to 0.0000 degrees (target was 0.0000) in 372.7859 ms
17-02-28 19:43:32.140 -08 000000009 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 372.8571 ms
17-02-28 19:43:32.140 -08 000000083 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 372.6133 ms
17-02-28 19:43:32.140 -08 000000083 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 373.0247 ms
17-02-28 19:43:32.140 -08 000000009 INF: ======================================
17-02-28 19:43:32.140 -08 000000083 INF: ======================================
17-02-28 19:43:32.142 -08 000000027 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:32.143 -08 000000027 INF: ======================================
17-02-28 19:43:32.180 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1IR\r
17-02-28 19:43:32.204 -08 000000087 INF: Y Motor: Unshifted Position: 5797040
17-02-28 19:43:32.204 -08 000000087 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:32.204 -08 000000087 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:32.265 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:32.266 -08 000000087 INF: Y Motor: Recv v 0\r
17-02-28 19:43:32.266 -08 000000087 INF: Y Motor: Moved to 62.9704 after 1310 ms
17-02-28 19:43:32.266 -08 000000087 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:32.328 -08 000000087 INF: Y Motor: Recv v 4097\r
17-02-28 19:43:32.328 -08 000000087 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:32.328 -08 000000087 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:32.365 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:32.389 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0@(0x03)\r\n(0xFF)
17-02-28 19:43:32.390 -08 000000087 INF: Y Motor: Recv v 0\r
17-02-28 19:43:32.390 -08 000000087 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:32.390 -08 000000087 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:32.452 -08 000000087 INF: Y Motor: Recv v 134217728\r
17-02-28 19:43:32.452 -08 000000087 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:43:32.452 -08 000000087 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:32.452 -08 000000087 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:32.517 -08 000000087 INF: Y Motor: Recv v 0\r
17-02-28 19:43:32.517 -08 000000087 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:32.517 -08 000000087 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:32.517 -08 000000087 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:32.579 -08 000000087 INF: Y Motor: Recv ok\r
17-02-28 19:43:32.579 -08 000000087 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:32.579 -08 000000087 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:32.639 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Xmit /1\r
17-02-28 19:43:32.642 -08 000000087 INF: Y Motor: Recv ok\r
17-02-28 19:43:32.642 -08 000000087 INF: ======================================
17-02-28 19:43:32.643 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:32.644 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:32.645 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:32.645 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:43:32.701 -08 000000039 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:43:32.701 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:32.702 -08 000000018 INF: KloehnSerialPort A (KLOEHNA): Recv /0`(0x03)\r\n(0xFF)
17-02-28 19:43:32.702 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:32.702 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Closing shutoff valve===================
17-02-28 19:43:32.763 -08 000000079 INF: FPGA: Recv TDIYERD 6297044
17-02-28 19:43:32.763 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:43:32.826 -08 000000009 INF: FPGA: Recv ZADCR 2422
17-02-28 19:43:32.826 -08 000000042 INF: At scan end Y pos = 62.970 and Z pos = -0.010. Y moved -1.363 mm
17-02-28 19:43:32.826 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:43:32.887 -08 000000010 INF: FPGA: Recv TDIPULSES 3073
17-02-28 19:43:32.887 -08 000000042 INF: The FPGA sent 3072 triggers to the camera ; expected 3072
17-02-28 19:43:32.887 -08 000000042 INF: TDIScan finished after 4990.5327 ms
17-02-28 19:43:32.887 -08 000000042 INF: Image[0]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:32.887 -08 000000042 INF: Image[2]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:32.887 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:43:32.952 -08 000000067 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:43:32.953 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:32.953 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:32.954 -08 000000060 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:43:32.954 -08 000000025 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:43:32.954 -08 000000069 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:43:32.954 -08 000000060 INF: ======================================
17-02-28 19:43:32.954 -08 000000069 INF: ======================================
17-02-28 19:43:32.954 -08 000000025 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:43:32.954 -08 000000025 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:43:33.014 -08 000000025 INF: Y Motor: Recv ok\r
17-02-28 19:43:33.014 -08 000000025 INF: ======================================
17-02-28 19:43:33.015 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:33.016 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:33.017 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(A)===================
17-02-28 19:43:33.042 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:33.042 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(G)===================
17-02-28 19:43:33.068 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:33.068 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(T)===================
17-02-28 19:43:33.095 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:33.095 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(C)===================
17-02-28 19:43:33.123 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:33.123 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:33.124 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:33.125 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, ETF: Extracting coords===================
17-02-28 19:43:33.134 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:33.134 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:33.134 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point, Extracting metrics===================
17-02-28 19:43:33.448 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:33.448 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:33.449 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:33.449 -08 000000018 INF: WaitCommand(30000) start
17-02-28 19:43:33.449 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 30 of 30 seconds left===================
17-02-28 19:43:33.912 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:33.937 -08 000000042 INF: ETF for image Index#0: Best Z position at bottom surface = -0.0929237750006337Best Z position at top surface = -0.164334964130903Best Z position at top surface + compensator offset = -0.141634964130903 C:1,L:2,T
17-02-28 19:43:33.938 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 0 is -0.164334964130903
17-02-28 19:43:33.938 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 0 is 63.99764
17-02-28 19:43:33.938 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 1 is -0.0929237750006337
17-02-28 19:43:33.938 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 1 is 63.65402
17-02-28 19:43:33.938 -08 000000042 INF: Z-height at LaneTopSurface is -0.164334964130903.
17-02-28 19:43:33.938 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:34.235 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:43:34.235 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:43:34.261 -08 000000101 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:34.261 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:34.263 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:34.263 -08 000000042 INF: Lane 2, LaneTopSurface Surface was not flagged for detilt operations after ETF. Moving to default tilt positions: m1=4.998974, m2=5.393944, m3=5.34035
17-02-28 19:43:34.263 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:34.264 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:34.264 -08 000000020 INF: ===================Move Tilt Motor 2===================
17-02-28 19:43:34.264 -08 000000047 INF: ===================Move Tilt Motor 3===================
17-02-28 19:43:34.264 -08 000000094 INF: ===================Move Tilt Motor 1===================
17-02-28 19:43:34.264 -08 000000020 INF: Tilt Motor 2: Moving to 5.3939 mm, started at 5.2796 mm, delta = 0.1143 mm
17-02-28 19:43:34.265 -08 000000020 INF: FPGA: Xmit T2RD\n
17-02-28 19:43:34.265 -08 000000094 INF: Tilt Motor 1: Moving to 4.9990 mm, started at 5.0670 mm, delta = -0.0681 mm
17-02-28 19:43:34.265 -08 000000047 INF: Tilt Motor 3: Moving to 5.3404 mm, started at 5.2268 mm, delta = 0.1135 mm
17-02-28 19:43:34.266 -08 000000094 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:34.268 -08 000000047 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:34.323 -08 000000104 INF: FPGA: Recv T2RD 20786
17-02-28 19:43:34.323 -08 000000104 INF: FPGA: Recv T1RD 19949
17-02-28 19:43:34.323 -08 000000104 INF: FPGA: Recv T3RD 20578
17-02-28 19:43:34.323 -08 000000047 INF: Tilt Motor 3: Encoder: at motor step 3429 + 4/6
17-02-28 19:43:34.323 -08 000000020 INF: Tilt Motor 2: Encoder: at motor step 3464 + 2/6
17-02-28 19:43:34.323 -08 000000047 INF: Tilt Motor 3: Moving to 21025 encoder counts
17-02-28 19:43:34.323 -08 000000094 INF: Tilt Motor 1: Encoder: at motor step 3324 + 5/6
17-02-28 19:43:34.323 -08 000000094 INF: Tilt Motor 1: Moving to 19681 encoder counts
17-02-28 19:43:34.323 -08 000000020 INF: Tilt Motor 2: Moving to 21236 encoder counts
17-02-28 19:43:34.323 -08 000000047 INF: FPGA: Xmit T3MOVETO 21025\n
17-02-28 19:43:34.324 -08 000000094 INF: FPGA: Xmit T1MOVETO 19681\n
17-02-28 19:43:34.326 -08 000000020 INF: FPGA: Xmit T2MOVETO 21236\n
17-02-28 19:43:34.450 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:34.450 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 29 of 30 seconds left===================
17-02-28 19:43:34.509 -08 000000084 INF: FPGA: Recv T1MOVETO 44
17-02-28 19:43:34.509 -08 000000094 INF: Tilt Motor 1: To move from 5.067 to 4.999 (-0.068 mm) should take 45 steps, but required 44 steps (0.067 mm). Slippage = -0.002 mm (0.02%)
17-02-28 19:43:34.509 -08 000000094 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:34.574 -08 000000058 INF: FPGA: Recv T3MOVETO 74
17-02-28 19:43:34.574 -08 000000058 INF: FPGA: Recv T2MOVETO 75
17-02-28 19:43:34.574 -08 000000058 INF: FPGA: Recv T1RD 19687
17-02-28 19:43:34.574 -08 000000094 INF: Tilt Motor 1: Encoder: at motor step 3281 + 1/6
17-02-28 19:43:34.574 -08 000000047 INF: Tilt Motor 3: To move from 5.227 to 5.340 (0.114 mm) should take 74 steps, but required 74 steps (0.113 mm). Slippage = 0.000 mm (0.00%)
17-02-28 19:43:34.574 -08 000000094 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:34.574 -08 000000020 INF: Tilt Motor 2: To move from 5.280 to 5.394 (0.114 mm) should take 75 steps, but required 75 steps (0.114 mm). Slippage = 0.000 mm (0.00%)
17-02-28 19:43:34.575 -08 000000047 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:34.577 -08 000000020 INF: FPGA: Xmit T2RD\n
17-02-28 19:43:34.636 -08 000000050 INF: FPGA: Recv T1RD 19687
17-02-28 19:43:34.636 -08 000000050 INF: FPGA: Recv T3RD 21021
17-02-28 19:43:34.636 -08 000000050 INF: FPGA: Recv T2RD 21236
17-02-28 19:43:34.636 -08 000000094 INF: Tilt Motor 1: Encoder: at motor step 3281 + 1/6
17-02-28 19:43:34.636 -08 000000047 INF: Tilt Motor 3: Encoder: at motor step 3503 + 3/6
17-02-28 19:43:34.636 -08 000000094 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:34.636 -08 000000020 INF: Tilt Motor 2: Encoder: at motor step 3539 + 2/6
17-02-28 19:43:34.637 -08 000000020 INF: FPGA: Xmit T2RD\n
17-02-28 19:43:34.639 -08 000000047 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:34.698 -08 000000079 INF: FPGA: Recv T1RD 19687
17-02-28 19:43:34.698 -08 000000079 INF: FPGA: Recv T2RD 21236
17-02-28 19:43:34.698 -08 000000079 INF: FPGA: Recv T3RD 21021
17-02-28 19:43:34.698 -08 000000047 INF: Tilt Motor 3: Encoder: at motor step 3503 + 3/6
17-02-28 19:43:34.698 -08 000000094 INF: Tilt Motor 1: Encoder: at motor step 3281 + 1/6
17-02-28 19:43:34.698 -08 000000094 INF: Tilt Motor 1: After move to 4.9990, error = 0.0015, min/max error = -0.0013/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:34.698 -08 000000020 INF: Tilt Motor 2: Encoder: at motor step 3539 + 2/6
17-02-28 19:43:34.698 -08 000000094 INF: Tilt Motor 1: Moved to 5.0005 after 433.4224 ms
17-02-28 19:43:34.698 -08 000000047 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:34.698 -08 000000094 INF: ======================================
17-02-28 19:43:34.699 -08 000000020 INF: FPGA: Xmit T2RD\n
17-02-28 19:43:34.760 -08 000000035 INF: FPGA: Recv T3RD 21021
17-02-28 19:43:34.760 -08 000000035 INF: FPGA: Recv T2RD 21236
17-02-28 19:43:34.760 -08 000000020 INF: Tilt Motor 2: Encoder: at motor step 3539 + 2/6
17-02-28 19:43:34.760 -08 000000020 INF: Tilt Motor 2: After move to 5.3939, error = 0.0000, min/max error = -0.0016/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:34.760 -08 000000047 INF: Tilt Motor 3: Encoder: at motor step 3503 + 3/6
17-02-28 19:43:34.760 -08 000000020 INF: Tilt Motor 2: Moved to 5.3939 after 495.5389 ms
17-02-28 19:43:34.760 -08 000000047 INF: Tilt Motor 3: After move to 5.3404, error = -0.0010, min/max error = -0.0017/0.0016, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:34.760 -08 000000047 INF: Tilt Motor 3: Moved to 5.3393 after 495.5652 ms
17-02-28 19:43:34.760 -08 000000020 INF: ======================================
17-02-28 19:43:34.760 -08 000000047 INF: ======================================
17-02-28 19:43:34.761 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:34.762 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:34.763 -08 000000042 INF: ETF Best Z: -0.141635 mm (37128 DAC)
17-02-28 19:43:34.769 -08 000000042 INF: Transformed XStagePosition from 74.71564 mm to 74.7156372070313 mm.
17-02-28 19:43:34.777 -08 000000042 INF: Transformed StartingYStagePosition from 40.4930030822754 mm to 40.4930030822754 mm.
17-02-28 19:43:34.778 -08 000000042 INF: Transformed StartingYStageITFPosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:34.778 -08 000000042 INF: Transformed TriggerYStagePosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:34.778 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:34.778 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:34.781 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:43:34.782 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:43:34.782 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:43:34.822 -08 000000069 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:34.822 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:34.822 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:34.822 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.0100 mm
17-02-28 19:43:34.823 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:43:34.884 -08 000000037 INF: FPGA: Recv ZTRG 
17-02-28 19:43:34.884 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:43:34.948 -08 000000099 INF: FPGA: Recv ZYT 
17-02-28 19:43:34.949 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:43:34.949 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:43:35.011 -08 000000050 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:43:35.011 -08 000000050 INF: FPGA: Recv ZMV 
17-02-28 19:43:35.011 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:43:35.011 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 62.2796 ms
17-02-28 19:43:35.011 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:43:35.073 -08 000000093 INF: FPGA: Recv ZDACR 60292
17-02-28 19:43:35.074 -08 000000042 INF: Z Motor: MoveAndTrigger took 251.094 ms w/comms
17-02-28 19:43:35.074 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:35.074 -08 000000042 INF: Z Motor: MoveAbsStepped took 251.2267 ms
17-02-28 19:43:35.074 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:35.075 -08 000000042 INF: Transformed XStagePosition from 74.71564 mm to 74.7156372070313 mm.
17-02-28 19:43:35.084 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:35.084 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:35.084 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:35.085 -08 000000042 INF: Z Motor: Set Z velocity to 0.312 mm/s / 401506 16.16 format
17-02-28 19:43:35.085 -08 000000042 INF: FPGA: Xmit ZSTEP 401506\n
17-02-28 19:43:35.133 -08 000000039 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:35.133 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:35.134 -08 000000042 INF: Transformed XStagePosition from 74.71564 mm to 74.7156372070313 mm.
17-02-28 19:43:35.144 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:35.144 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:35.144 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:35.147 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:35.147 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Populating image tags===================
17-02-28 19:43:35.147 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:35.147 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 3072, channels = A, G, T, C, TDI Z = -230.0 um, section = C_1
17-02-28 19:43:35.148 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:35.148 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:35.149 -08 000000088 INF: ===================Move X,Y===================
17-02-28 19:43:35.149 -08 000000023 INF: ===================MoveEmissionFilters===================
17-02-28 19:43:35.150 -08 000000088 INF: ===================Move X,Y, Parallel===================
17-02-28 19:43:35.150 -08 000000048 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:35.150 -08 000000099 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:35.150 -08 000000069 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:35.150 -08 000000060 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:35.150 -08 000000065 INF: ===================Move X Motor without settling===================
17-02-28 19:43:35.150 -08 000000093 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:35.151 -08 000000065 INF: X Motor: Xmit PR VM\n
17-02-28 19:43:35.151 -08 000000048 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:35.151 -08 000000093 INF: Y Motor: Moving to 64.5335 mm @25.000 mm/sec, started at 62.9704 mm
17-02-28 19:43:35.151 -08 000000069 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:35.151 -08 000000060 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:35.151 -08 000000099 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:35.151 -08 000000093 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:35.151 -08 000000093 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:35.152 -08 000000077 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:43:35.152 -08 000000084 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:43:35.152 -08 000000050 INF: ===================Move Emission Filter 31(sim) to OutOfPath===================
17-02-28 19:43:35.152 -08 000000094 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:43:35.152 -08 000000063 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:43:35.152 -08 000000064 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:43:35.152 -08 000000084 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:43:35.152 -08 000000009 INF: ===================Move Emission Filter 22(sim) to OutOfPath===================
17-02-28 19:43:35.152 -08 000000035 INF: ===================Move Emission Filter 42(sim) to OutOfPath===================
17-02-28 19:43:35.152 -08 000000063 INF: ======================================
17-02-28 19:43:35.153 -08 000000064 INF: ======================================
17-02-28 19:43:35.153 -08 000000035 INF: ======================================
17-02-28 19:43:35.153 -08 000000077 INF: ======================================
17-02-28 19:43:35.153 -08 000000094 INF: ======================================
17-02-28 19:43:35.153 -08 000000009 INF: ======================================
17-02-28 19:43:35.154 -08 000000099 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:35.154 -08 000000060 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:35.155 -08 000000050 INF: ======================================
17-02-28 19:43:35.155 -08 000000084 INF: ======================================
17-02-28 19:43:35.155 -08 000000099 INF: ======================================
17-02-28 19:43:35.156 -08 000000060 INF: ======================================
17-02-28 19:43:35.156 -08 000000069 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:35.156 -08 000000048 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:35.157 -08 000000069 INF: ======================================
17-02-28 19:43:35.158 -08 000000048 INF: ======================================
17-02-28 19:43:35.159 -08 000000023 INF: ======================================
17-02-28 19:43:35.200 -08 000000093 INF: Y Motor: Recv ok\r
17-02-28 19:43:35.200 -08 000000093 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:35.200 -08 000000093 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:35.200 -08 000000065 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:43:35.200 -08 000000065 INF: X Motor: Xmit PR VI\n
17-02-28 19:43:35.262 -08 000000065 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:43:35.262 -08 000000065 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:43:35.262 -08 000000093 INF: Y Motor: Recv ok\r
17-02-28 19:43:35.262 -08 000000093 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:35.262 -08 000000065 INF: X Motor: Moving to 74.7156 mm @15.000 mm/sec, started at 71.9517 mm
17-02-28 19:43:35.262 -08 000000065 INF: X Motor: Xmit MA 6437\n
17-02-28 19:43:35.324 -08 000000093 INF: Y Motor: Recv v 0\r
17-02-28 19:43:35.324 -08 000000093 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:35.324 -08 000000065 INF: X Motor: Recv MA 6437\r\n>
17-02-28 19:43:35.324 -08 000000093 INF: Y Motor: Set target position to 5953351 encoder counts
17-02-28 19:43:35.324 -08 000000093 INF: Y Motor: Xmit s r0xca 5953351\r
17-02-28 19:43:35.324 -08 000000065 INF: X Motor: WaitUntilStopped 60184
17-02-28 19:43:35.386 -08 000000093 INF: Y Motor: Recv ok\r
17-02-28 19:43:35.386 -08 000000093 INF: Y Motor: Start the move command
17-02-28 19:43:35.386 -08 000000093 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:35.448 -08 000000093 INF: Y Motor: Recv ok\r
17-02-28 19:43:35.448 -08 000000093 INF: Y Motor: WaitUntilStopped 60063
17-02-28 19:43:35.448 -08 000000093 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:35.450 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:35.450 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 28 of 30 seconds left===================
17-02-28 19:43:35.572 -08 000000093 INF: Y Motor: Unshifted Position: 5878504
17-02-28 19:43:35.622 -08 000000093 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:35.749 -08 000000093 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:35.885 -08 000000093 INF: Y Motor: Unshifted Position: 5953356
17-02-28 19:43:35.885 -08 000000093 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:35.885 -08 000000093 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:35.947 -08 000000093 INF: Y Motor: Recv v 0\r
17-02-28 19:43:35.947 -08 000000093 INF: Y Motor: Moved to 64.5336 after 499 ms
17-02-28 19:43:35.947 -08 000000093 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:36.009 -08 000000093 INF: Y Motor: Recv v 4096\r
17-02-28 19:43:36.009 -08 000000093 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:36.009 -08 000000093 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:36.072 -08 000000093 INF: Y Motor: Recv v 0\r
17-02-28 19:43:36.072 -08 000000093 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:36.072 -08 000000065 INF: X Motor: Xmit PR ER\n
17-02-28 19:43:36.072 -08 000000093 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:36.137 -08 000000093 INF: Y Motor: Recv v 402653184\r
17-02-28 19:43:36.137 -08 000000093 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:43:36.137 -08 000000093 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:36.137 -08 000000093 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:36.137 -08 000000065 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:43:36.137 -08 000000065 INF: X Motor: Moved to 74.7153 after 812 ms
17-02-28 19:43:36.137 -08 000000065 INF: ======================================
17-02-28 19:43:36.199 -08 000000093 INF: Y Motor: Recv v 0\r
17-02-28 19:43:36.199 -08 000000093 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:36.199 -08 000000093 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:36.199 -08 000000093 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:36.261 -08 000000093 INF: Y Motor: Recv ok\r
17-02-28 19:43:36.261 -08 000000093 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:36.261 -08 000000093 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:36.323 -08 000000093 INF: Y Motor: Recv ok\r
17-02-28 19:43:36.323 -08 000000093 INF: ======================================
17-02-28 19:43:36.324 -08 000000088 INF: ===================Move X,Y===================
17-02-28 19:43:36.325 -08 000000088 INF: ======================================
17-02-28 19:43:36.326 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:36.327 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:36.327 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:43:36.327 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:43:36.385 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:43:36.385 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:43:36.445 -08 000000050 INF: FPGA: Recv ZFREQCL
17-02-28 19:43:36.445 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Reporting Motor Positions===================
17-02-28 19:43:36.446 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:36.446 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:36.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:36.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 27 of 30 seconds left===================
17-02-28 19:43:36.507 -08 000000065 INF: FPGA: Recv TDIYERD 6453352
17-02-28 19:43:36.507 -08 000000042 INF: Before scan, Y encoder from FPGA = 6453352 counts (64.534 mm)
17-02-28 19:43:36.507 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:36.508 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:36.509 -08 000000086 INF: ===================TDI Scan Setup===================
17-02-28 19:43:36.509 -08 000000094 INF: ===================Set YMotor gains for scans===================
17-02-28 19:43:36.509 -08 000000094 INF: ======================================
17-02-28 19:43:36.509 -08 000000086 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:43:36.510 -08 000000086 INF: ===================TDI Scan Setup===================
17-02-28 19:43:36.511 -08 000000086 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:36.512 -08 000000086 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:43:36.512 -08 000000086 INF: FPGA: Xmit TDIYPOS 6433351\n
17-02-28 19:43:36.572 -08 000000074 INF: FPGA: Recv TDIYPOS
17-02-28 19:43:36.572 -08 000000086 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:36.573 -08 000000086 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:43:36.574 -08 000000086 INF: FPGA: Xmit TDIYARM2 3072 1 1\n
17-02-28 19:43:36.634 -08 000000037 INF: FPGA: Recv TDIYARM2
17-02-28 19:43:36.634 -08 000000086 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:36.635 -08 000000086 INF: ===================TDI Scan Setup===================
17-02-28 19:43:36.637 -08 000000086 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:43:36.637 -08 000000086 INF: ===================TDI Scan Setup===================
17-02-28 19:43:36.638 -08 000000086 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:36.639 -08 000000086 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:36.640 -08 000000086 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:37.009 -08 000000086 INF: Camera #0 AttachBuffer (imageDataPtr = 74572887352 imgPtr = 74572887352 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:37.009 -08 000000086 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:37.009 -08 000000086 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:37.024 -08 000000086 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:37.026 -08 000000086 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:37.393 -08 000000086 INF: Camera #2 AttachBuffer (imageDataPtr = 75511411392 imgPtr = 74774213944 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:37.393 -08 000000086 INF: CameraArmTDI CameraBaseSensorPath: 2 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:37.393 -08 000000086 INF: CameraArmTDI CameraBaseSensorPath: 2... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:37.409 -08 000000086 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:37.410 -08 000000086 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:37.412 -08 000000086 INF: ===================TDI Scan Setup===================
17-02-28 19:43:37.413 -08 000000086 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:37.414 -08 000000086 INF: ===================TDI Scan Setup, Serial, Delay Next Z Move Until Y===================
17-02-28 19:43:37.414 -08 000000086 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:37.416 -08 000000086 INF: ===================TDI Scan Setup, Serial, Arm Z Motor===================
17-02-28 19:43:37.416 -08 000000086 INF: Z Motor: Entering ArmAbsStepped
17-02-28 19:43:37.416 -08 000000086 INF: Z Motor: Arming to move to -0.0100 mm
17-02-28 19:43:37.416 -08 000000086 INF: FPGA: Xmit ZYT 0 2\n
17-02-28 19:43:37.443 -08 000000053 INF: FPGA: Recv ZYT 
17-02-28 19:43:37.443 -08 000000086 INF: Z Motor: ZARM will arm Z motor and start the ramp when first camera image trigger pulse is sent (past camera clearing lines)
17-02-28 19:43:37.443 -08 000000086 INF: FPGA: Xmit ZARM 2621\n
17-02-28 19:43:37.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:37.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 26 of 30 seconds left===================
17-02-28 19:43:37.508 -08 000000101 INF: FPGA: Recv ZARM
17-02-28 19:43:37.508 -08 000000086 INF: Z Motor: ArmAndSetTriggerMode 'ZARM' command took 64.9475 ms
17-02-28 19:43:37.508 -08 000000086 INF: Z Motor: ArmAbsStepped took 92.1146 ms
17-02-28 19:43:37.508 -08 000000086 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:37.509 -08 000000086 INF: ===================TDI Scan Setup===================
17-02-28 19:43:37.510 -08 000000086 INF: ======================================
17-02-28 19:43:37.511 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:37.512 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:37.512 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:37.513 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:37.514 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:37.515 -08 000000035 INF: ===================Move Excitation Filter 2 (A) to 'OD0.2'===================
17-02-28 19:43:37.515 -08 000000048 INF: ===================Move Excitation Filter 1 (G) to 'OD0.2'===================
17-02-28 19:43:37.515 -08 000000035 INF: Excitation Filter 2: Moving 'A' to index 5 (OD0.2)
17-02-28 19:43:37.515 -08 000000035 INF: Excitation Filter 2: Moving to 225.0000 degrees
17-02-28 19:43:37.515 -08 000000035 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:43:37.515 -08 000000048 INF: Excitation Filter 1: Moving 'G' to index 5 (OD0.2)
17-02-28 19:43:37.515 -08 000000035 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:43:37.515 -08 000000048 INF: Excitation Filter 1: Moving to 225.0000 degrees
17-02-28 19:43:37.515 -08 000000048 INF: Excitation Filter 1: Moving -107 steps
17-02-28 19:43:37.516 -08 000000048 INF: FPGA: Xmit EX1MV -107\n
17-02-28 19:43:37.881 -08 000000063 INF: FPGA: Recv EX2MV
17-02-28 19:43:37.881 -08 000000063 INF: FPGA: Recv EX1MV
17-02-28 19:43:37.881 -08 000000035 INF: Excitation Filter 2: Moved -107 steps in 365.9038 ms
17-02-28 19:43:37.881 -08 000000048 INF: Excitation Filter 1: Moved -107 steps in 365.7962 ms
17-02-28 19:43:37.881 -08 000000035 INF: Excitation Filter 2: Moved to 224.7190 degrees (target was 225.0000) in 365.998 ms
17-02-28 19:43:37.881 -08 000000035 INF: Excitation Filter 2: Moved 'A' to index 5 (OD0.2) in 366.1072 ms
17-02-28 19:43:37.881 -08 000000048 INF: Excitation Filter 1: Moved to 224.7190 degrees (target was 225.0000) in 365.9513 ms
17-02-28 19:43:37.881 -08 000000048 INF: Excitation Filter 1: Moved 'G' to index 5 (OD0.2) in 366.1201 ms
17-02-28 19:43:37.881 -08 000000035 INF: ======================================
17-02-28 19:43:37.881 -08 000000048 INF: ======================================
17-02-28 19:43:37.882 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:37.884 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:37.884 -08 000000087 INF: ===================Serial===================
17-02-28 19:43:37.885 -08 000000088 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:37.885 -08 000000077 INF: ===================Camera TDI===================
17-02-28 19:43:37.885 -08 000000054 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:37.885 -08 000000054 INF: Y Motor: Moving to 62.9704 mm @1.500 mm/sec, started at 64.5336 mm
17-02-28 19:43:37.885 -08 000000054 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:37.885 -08 000000054 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:37.885 -08 000000087 INF: ===================Serial, FPGA Z Wait===================
17-02-28 19:43:37.885 -08 000000088 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:43:37.885 -08 000000087 INF: FPGA: Xmit ZWAIT\n
17-02-28 19:43:37.885 -08 000000077 INF: ===================Camera TDI, Parallel===================
17-02-28 19:43:37.886 -08 000000079 INF: ===================Camera TDI===================
17-02-28 19:43:37.886 -08 000000070 INF: ===================Camera TDI===================
17-02-28 19:43:37.887 -08 000000070 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:37.887 -08 000000070 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:37.888 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:37.888 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:37.888 -08 000000088 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:43:37.944 -08 000000054 INF: Y Motor: Recv ok\r
17-02-28 19:43:37.944 -08 000000054 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:37.944 -08 000000054 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:38.009 -08 000000054 INF: Y Motor: Recv ok\r
17-02-28 19:43:38.009 -08 000000054 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:38.037 -08 000000070 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:38.037 -08 000000070 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:38.038 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:38.038 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:38.069 -08 000000054 INF: Y Motor: Recv v 0\r
17-02-28 19:43:38.069 -08 000000054 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:38.069 -08 000000054 INF: Y Motor: Set target position to 5797042 encoder counts
17-02-28 19:43:38.069 -08 000000054 INF: Y Motor: Xmit s r0xca 5797042\r
17-02-28 19:43:38.134 -08 000000054 INF: Y Motor: Recv ok\r
17-02-28 19:43:38.134 -08 000000054 INF: Y Motor: Start the move command
17-02-28 19:43:38.134 -08 000000054 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:38.187 -08 000000070 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:38.187 -08 000000070 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:38.188 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:38.188 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:38.196 -08 000000054 INF: Y Motor: Recv ok\r
17-02-28 19:43:38.196 -08 000000054 INF: Y Motor: WaitUntilStopped 61042
17-02-28 19:43:38.196 -08 000000054 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:38.321 -08 000000054 INF: Y Motor: Unshifted Position: 5935329
17-02-28 19:43:38.337 -08 000000070 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:38.337 -08 000000070 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:38.338 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:38.338 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:38.371 -08 000000054 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:38.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:38.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 25 of 30 seconds left===================
17-02-28 19:43:38.487 -08 000000070 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:38.487 -08 000000070 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:38.487 -08 000000070 INF: ===================Camera #2 Frame #1===================
17-02-28 19:43:38.488 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:38.488 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:38.488 -08 000000079 INF: ===================Camera #0 Frame #1===================
17-02-28 19:43:38.494 -08 000000054 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:38.633 -08 000000054 INF: Y Motor: Unshifted Position: 5888828
17-02-28 19:43:38.641 -08 000000070 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:43:38.641 -08 000000070 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:43:38.641 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:43:38.641 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:43:38.641 -08 000000070 INF: ===================Camera #2 Frame #3===================
17-02-28 19:43:38.641 -08 000000079 INF: ===================Camera #0 Frame #3===================
17-02-28 19:43:38.683 -08 000000054 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:38.798 -08 000000070 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:38.798 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:38.798 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:38.798 -08 000000070 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:38.798 -08 000000079 INF: ===================Camera #0 Frame #4===================
17-02-28 19:43:38.798 -08 000000070 INF: ===================Camera #2 Frame #4===================
17-02-28 19:43:38.807 -08 000000054 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:38.943 -08 000000054 INF: Y Motor: Unshifted Position: 5841819
17-02-28 19:43:38.951 -08 000000070 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:38.951 -08 000000070 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:38.951 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:38.951 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:38.951 -08 000000070 INF: ===================Camera #2 Frame #5===================
17-02-28 19:43:38.951 -08 000000079 INF: ===================Camera #0 Frame #5===================
17-02-28 19:43:38.993 -08 000000054 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:39.003 -08 000000035 INF: FPGA: Recv ZWAIT 
17-02-28 19:43:39.003 -08 000000087 INF: ===================Serial===================
17-02-28 19:43:39.005 -08 000000087 INF: ===================Serial, Confirm position Z Motor===================
17-02-28 19:43:39.005 -08 000000087 INF: ===================Serial===================
17-02-28 19:43:39.006 -08 000000087 INF: ======================================
17-02-28 19:43:39.065 -08 000000074 INF: FPGA: Recv TDIYWAIT
17-02-28 19:43:39.065 -08 000000088 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:39.067 -08 000000088 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:43:39.067 -08 000000037 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:43:39.068 -08 000000099 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:43:39.068 -08 000000037 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:43:39.068 -08 000000037 INF: Excitation Filter 1: Moving to 0.0000 degrees
17-02-28 19:43:39.068 -08 000000037 INF: Excitation Filter 1: Moving 107 steps
17-02-28 19:43:39.068 -08 000000037 INF: FPGA: Xmit EX1MV 107\n
17-02-28 19:43:39.068 -08 000000099 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:43:39.068 -08 000000099 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:43:39.068 -08 000000099 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:43:39.069 -08 000000099 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:43:39.104 -08 000000070 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:39.104 -08 000000070 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:39.104 -08 000000079 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:39.104 -08 000000079 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:39.104 -08 000000070 INF: ===================Camera #2 Frame #6===================
17-02-28 19:43:39.104 -08 000000079 INF: ===================Camera #0 Frame #6===================
17-02-28 19:43:39.107 -08 000000079 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:39.107 -08 000000070 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:39.108 -08 000000079 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:39.109 -08 000000070 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:39.117 -08 000000054 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:39.131 -08 000000079 INF: Camera #0 ReleaseBuffer
17-02-28 19:43:39.131 -08 000000079 INF: ===================Camera TDI===================
17-02-28 19:43:39.132 -08 000000079 INF: ======================================
17-02-28 19:43:39.156 -08 000000070 INF: Camera #2 ReleaseBuffer
17-02-28 19:43:39.156 -08 000000070 INF: ===================Camera TDI===================
17-02-28 19:43:39.157 -08 000000070 INF: ======================================
17-02-28 19:43:39.159 -08 000000077 INF: ===================Camera TDI===================
17-02-28 19:43:39.160 -08 000000077 INF: ======================================
17-02-28 19:43:39.256 -08 000000054 INF: Y Motor: Unshifted Position: 5797068
17-02-28 19:43:39.306 -08 000000054 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:39.440 -08 000000009 INF: FPGA: Recv EX1MV
17-02-28 19:43:39.440 -08 000000009 INF: FPGA: Recv EX2MV
17-02-28 19:43:39.440 -08 000000037 INF: Excitation Filter 1: Moved 107 steps in 372.1108 ms
17-02-28 19:43:39.440 -08 000000099 INF: Excitation Filter 2: Moved 107 steps in 371.9629 ms
17-02-28 19:43:39.440 -08 000000099 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 372.1176 ms
17-02-28 19:43:39.440 -08 000000099 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 372.2225 ms
17-02-28 19:43:39.440 -08 000000037 INF: Excitation Filter 1: Moved to 0.0000 degrees (target was 0.0000) in 372.2138 ms
17-02-28 19:43:39.440 -08 000000037 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 372.5932 ms
17-02-28 19:43:39.440 -08 000000099 INF: ======================================
17-02-28 19:43:39.440 -08 000000037 INF: ======================================
17-02-28 19:43:39.442 -08 000000054 INF: Y Motor: Unshifted Position: 5797042
17-02-28 19:43:39.442 -08 000000054 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:39.442 -08 000000054 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:39.442 -08 000000088 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:39.443 -08 000000088 INF: ======================================
17-02-28 19:43:39.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:39.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 24 of 30 seconds left===================
17-02-28 19:43:39.504 -08 000000054 INF: Y Motor: Recv v 0\r
17-02-28 19:43:39.504 -08 000000054 INF: Y Motor: Moved to 62.9704 after 1308 ms
17-02-28 19:43:39.504 -08 000000054 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:39.569 -08 000000054 INF: Y Motor: Recv v 4097\r
17-02-28 19:43:39.569 -08 000000054 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:39.569 -08 000000054 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:39.631 -08 000000054 INF: Y Motor: Recv v 0\r
17-02-28 19:43:39.631 -08 000000054 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:39.631 -08 000000054 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:39.693 -08 000000054 INF: Y Motor: Recv v 134217728\r
17-02-28 19:43:39.693 -08 000000054 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:43:39.693 -08 000000054 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:39.693 -08 000000054 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:39.755 -08 000000054 INF: Y Motor: Recv v 0\r
17-02-28 19:43:39.755 -08 000000054 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:39.755 -08 000000054 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:39.755 -08 000000054 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:39.817 -08 000000054 INF: Y Motor: Recv ok\r
17-02-28 19:43:39.817 -08 000000054 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:39.817 -08 000000054 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:39.879 -08 000000054 INF: Y Motor: Recv ok\r
17-02-28 19:43:39.879 -08 000000054 INF: ======================================
17-02-28 19:43:39.880 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:39.882 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:39.883 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:39.883 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:43:39.939 -08 000000035 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:43:39.939 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:40.001 -08 000000084 INF: FPGA: Recv TDIYERD 6297043
17-02-28 19:43:40.001 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:43:40.066 -08 000000101 INF: FPGA: Recv ZADCR 2421
17-02-28 19:43:40.066 -08 000000042 INF: At scan end Y pos = 62.970 and Z pos = -0.010. Y moved -1.363 mm
17-02-28 19:43:40.066 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:43:40.126 -08 000000060 INF: FPGA: Recv TDIPULSES 3073
17-02-28 19:43:40.126 -08 000000042 INF: The FPGA sent 3072 triggers to the camera ; expected 3072
17-02-28 19:43:40.126 -08 000000042 INF: TDIScan finished after 4991.7872 ms
17-02-28 19:43:40.126 -08 000000042 INF: Image[0]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:40.126 -08 000000042 INF: Image[2]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:40.126 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:43:40.191 -08 000000104 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:43:40.191 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:40.192 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:40.193 -08 000000063 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:43:40.193 -08 000000087 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:43:40.193 -08 000000025 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:43:40.193 -08 000000087 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:43:40.193 -08 000000087 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:43:40.193 -08 000000063 INF: ======================================
17-02-28 19:43:40.193 -08 000000025 INF: ======================================
17-02-28 19:43:40.255 -08 000000087 INF: Y Motor: Recv ok\r
17-02-28 19:43:40.255 -08 000000087 INF: ======================================
17-02-28 19:43:40.256 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:40.258 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:40.260 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(A)===================
17-02-28 19:43:40.290 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:40.290 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(G)===================
17-02-28 19:43:40.321 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:40.321 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(T)===================
17-02-28 19:43:40.351 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:40.351 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(C)===================
17-02-28 19:43:40.378 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:40.379 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:40.379 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:40.380 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, ETF: Extracting coords===================
17-02-28 19:43:40.391 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:40.391 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:40.391 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point, Extracting metrics===================
17-02-28 19:43:40.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:40.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 23 of 30 seconds left===================
17-02-28 19:43:41.162 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:41.187 -08 000000042 INF: ETF for image Index#0: Best Z position at bottom surface = -0.0913698699586808Best Z position at top surface = -0.163068772338969Best Z position at top surface + compensator offset = -0.140368772338969 C:1,L:3,T
17-02-28 19:43:41.188 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 0 is -0.163068772338969
17-02-28 19:43:41.188 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 0 is 63.99143
17-02-28 19:43:41.188 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 1 is -0.0913698699586808
17-02-28 19:43:41.188 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 1 is 63.64643
17-02-28 19:43:41.188 -08 000000042 INF: Z-height at LaneTopSurface is -0.163068772338969.
17-02-28 19:43:41.188 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:41.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:41.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 22 of 30 seconds left===================
17-02-28 19:43:41.487 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:43:41.487 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:43:41.499 -08 000000053 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:41.499 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:41.501 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:41.501 -08 000000042 INF: Lane 3, LaneTopSurface Surface was not flagged for detilt operations after ETF. Moving to default tilt positions: m1=4.998974, m2=5.393944, m3=5.34035
17-02-28 19:43:41.501 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:41.502 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:41.502 -08 000000067 INF: ===================Move Tilt Motor 1===================
17-02-28 19:43:41.502 -08 000000035 INF: ===================Move Tilt Motor 2===================
17-02-28 19:43:41.502 -08 000000067 INF: Tilt Motor 1: Moving to 4.9990 mm, started at 5.0005 mm, delta = -0.0015 mm
17-02-28 19:43:41.503 -08 000000010 INF: ===================Move Tilt Motor 3===================
17-02-28 19:43:41.503 -08 000000067 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:41.503 -08 000000035 INF: ======================================
17-02-28 19:43:41.503 -08 000000010 INF: Tilt Motor 3: Moving to 5.3404 mm, started at 5.3393 mm, delta = 0.0010 mm
17-02-28 19:43:41.509 -08 000000010 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:41.561 -08 000000093 INF: FPGA: Recv T1RD 19687
17-02-28 19:43:41.561 -08 000000093 INF: FPGA: Recv T3RD 21019
17-02-28 19:43:41.561 -08 000000067 INF: Tilt Motor 1: Encoder: at motor step 3281 + 1/6
17-02-28 19:43:41.561 -08 000000067 INF: Tilt Motor 1: Moving to 19681 encoder counts
17-02-28 19:43:41.561 -08 000000067 INF: FPGA: Xmit T1MOVETO 19681\n
17-02-28 19:43:41.561 -08 000000010 INF: Tilt Motor 3: Encoder: at motor step 3503 + 1/6
17-02-28 19:43:41.561 -08 000000010 INF: Tilt Motor 3: Moving to 21025 encoder counts
17-02-28 19:43:41.562 -08 000000010 INF: FPGA: Xmit T3MOVETO 21025\n
17-02-28 19:43:41.688 -08 000000069 INF: FPGA: Recv T3MOVETO 0
17-02-28 19:43:41.688 -08 000000069 INF: FPGA: Recv T1MOVETO 1
17-02-28 19:43:41.688 -08 000000067 INF: Tilt Motor 1: To move from 5.000 to 4.999 (-0.002 mm) should take 1 steps, but required 1 steps (0.002 mm). Slippage = 0.000 mm (0.00%)
17-02-28 19:43:41.688 -08 000000010 INF: Tilt Motor 3: To move from 5.339 to 5.340 (0.001 mm) should take 1 steps, but required 0 steps (0.000 mm). Slippage = -0.002 mm (-1.50%)
17-02-28 19:43:41.688 -08 000000067 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:41.689 -08 000000010 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:41.750 -08 000000077 INF: FPGA: Recv T1RD 19681
17-02-28 19:43:41.750 -08 000000077 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:41.750 -08 000000067 INF: Tilt Motor 1: Encoder: at motor step 3280 + 1/6
17-02-28 19:43:41.750 -08 000000010 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:41.750 -08 000000067 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:41.751 -08 000000010 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:41.812 -08 000000050 INF: FPGA: Recv T1RD 19681
17-02-28 19:43:41.812 -08 000000050 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:41.812 -08 000000010 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:41.812 -08 000000067 INF: Tilt Motor 1: Encoder: at motor step 3280 + 1/6
17-02-28 19:43:41.812 -08 000000010 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:41.813 -08 000000067 INF: FPGA: Xmit T1RD\n
17-02-28 19:43:41.874 -08 000000058 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:41.874 -08 000000058 INF: FPGA: Recv T1RD 19681
17-02-28 19:43:41.874 -08 000000010 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:41.874 -08 000000067 INF: Tilt Motor 1: Encoder: at motor step 3280 + 1/6
17-02-28 19:43:41.874 -08 000000010 INF: Tilt Motor 3: After move to 5.3404, error = -0.0013, min/max error = -0.0017/0.0016, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:41.874 -08 000000067 INF: Tilt Motor 1: After move to 4.9990, error = 0.0000, min/max error = -0.0013/0.0015, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:41.874 -08 000000010 INF: Tilt Motor 3: Moved to 5.3391 after 371.1794 ms
17-02-28 19:43:41.874 -08 000000067 INF: Tilt Motor 1: Moved to 4.9990 after 371.5337 ms
17-02-28 19:43:41.874 -08 000000010 INF: ======================================
17-02-28 19:43:41.874 -08 000000067 INF: ======================================
17-02-28 19:43:41.875 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:41.876 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:41.877 -08 000000042 INF: ETF Best Z: -0.1403688 mm (36796 DAC)
17-02-28 19:43:41.886 -08 000000042 INF: Transformed XStagePosition from 77.48064 mm to 77.4806365966797 mm.
17-02-28 19:43:41.896 -08 000000042 INF: Transformed StartingYStagePosition from 40.4930030822754 mm to 40.4930030822754 mm.
17-02-28 19:43:41.896 -08 000000042 INF: Transformed StartingYStageITFPosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:41.896 -08 000000042 INF: Transformed TriggerYStagePosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:41.896 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:41.896 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:41.900 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:43:41.900 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:43:41.900 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:43:41.936 -08 000000048 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:41.936 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:41.937 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:41.937 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.0100 mm
17-02-28 19:43:41.937 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:43:41.998 -08 000000094 INF: FPGA: Recv ZTRG 
17-02-28 19:43:41.998 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:43:42.063 -08 000000048 INF: FPGA: Recv ZYT 
17-02-28 19:43:42.063 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:43:42.063 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:43:42.123 -08 000000076 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:43:42.123 -08 000000076 INF: FPGA: Recv ZMV 
17-02-28 19:43:42.123 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:43:42.123 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 59.9899 ms
17-02-28 19:43:42.123 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:43:42.186 -08 000000104 INF: FPGA: Recv ZDACR 60292
17-02-28 19:43:42.186 -08 000000042 INF: Z Motor: MoveAndTrigger took 249.1152 ms w/comms
17-02-28 19:43:42.186 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:42.186 -08 000000042 INF: Z Motor: MoveAbsStepped took 249.2711 ms
17-02-28 19:43:42.186 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:42.187 -08 000000042 INF: Transformed XStagePosition from 77.48064 mm to 77.4806365966797 mm.
17-02-28 19:43:42.197 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:42.197 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:42.197 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:42.197 -08 000000042 INF: Z Motor: Set Z velocity to 0.312 mm/s / 401506 16.16 format
17-02-28 19:43:42.197 -08 000000042 INF: FPGA: Xmit ZSTEP 401506\n
17-02-28 19:43:42.250 -08 000000037 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:42.251 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:42.251 -08 000000042 INF: Transformed XStagePosition from 77.48064 mm to 77.4806365966797 mm.
17-02-28 19:43:42.261 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:42.261 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:42.261 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:42.263 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:42.263 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Populating image tags===================
17-02-28 19:43:42.263 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:42.263 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 3072, channels = A, G, T, C, TDI Z = -230.0 um, section = D_1
17-02-28 19:43:42.264 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:42.264 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:42.265 -08 000000035 INF: ===================MoveEmissionFilters===================
17-02-28 19:43:42.265 -08 000000050 INF: ===================Move X,Y===================
17-02-28 19:43:42.266 -08 000000054 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:42.266 -08 000000063 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:42.266 -08 000000050 INF: ===================Move X,Y, Parallel===================
17-02-28 19:43:42.266 -08 000000009 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:42.266 -08 000000023 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:42.267 -08 000000054 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:42.267 -08 000000063 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:42.267 -08 000000009 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:42.267 -08 000000023 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:42.267 -08 000000010 INF: ===================Move X Motor without settling===================
17-02-28 19:43:42.267 -08 000000060 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:42.267 -08 000000010 INF: X Motor: Xmit PR VM\n
17-02-28 19:43:42.267 -08 000000060 INF: Y Motor: Moving to 64.5335 mm @25.000 mm/sec, started at 62.9704 mm
17-02-28 19:43:42.267 -08 000000060 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:42.267 -08 000000060 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:42.267 -08 000000084 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:43:42.268 -08 000000104 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:43:42.268 -08 000000101 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:43:42.268 -08 000000025 INF: ===================Move Emission Filter 22(sim) to OutOfPath===================
17-02-28 19:43:42.268 -08 000000048 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:43:42.268 -08 000000051 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:43:42.268 -08 000000093 INF: ===================Move Emission Filter 31(sim) to OutOfPath===================
17-02-28 19:43:42.268 -08 000000064 INF: ===================Move Emission Filter 42(sim) to OutOfPath===================
17-02-28 19:43:42.268 -08 000000084 INF: ======================================
17-02-28 19:43:42.268 -08 000000104 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:43:42.268 -08 000000051 INF: ======================================
17-02-28 19:43:42.268 -08 000000104 INF: ======================================
17-02-28 19:43:42.269 -08 000000064 INF: ======================================
17-02-28 19:43:42.269 -08 000000101 INF: ======================================
17-02-28 19:43:42.269 -08 000000054 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:42.270 -08 000000023 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:42.270 -08 000000054 INF: ======================================
17-02-28 19:43:42.271 -08 000000025 INF: ======================================
17-02-28 19:43:42.271 -08 000000023 INF: ======================================
17-02-28 19:43:42.271 -08 000000093 INF: ======================================
17-02-28 19:43:42.272 -08 000000048 INF: ======================================
17-02-28 19:43:42.272 -08 000000063 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:42.273 -08 000000009 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:42.273 -08 000000063 INF: ======================================
17-02-28 19:43:42.274 -08 000000009 INF: ======================================
17-02-28 19:43:42.274 -08 000000035 INF: ======================================
17-02-28 19:43:42.314 -08 000000060 INF: Y Motor: Recv ok\r
17-02-28 19:43:42.314 -08 000000060 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:42.314 -08 000000060 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:42.314 -08 000000010 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:43:42.314 -08 000000010 INF: X Motor: Xmit PR VI\n
17-02-28 19:43:42.376 -08 000000010 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:43:42.376 -08 000000010 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:43:42.376 -08 000000060 INF: Y Motor: Recv ok\r
17-02-28 19:43:42.376 -08 000000060 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:42.376 -08 000000010 INF: X Motor: Moving to 77.4806 mm @15.000 mm/sec, started at 74.7153 mm
17-02-28 19:43:42.376 -08 000000010 INF: X Motor: Xmit MA 7570\n
17-02-28 19:43:42.438 -08 000000060 INF: Y Motor: Recv v 0\r
17-02-28 19:43:42.438 -08 000000010 INF: X Motor: Recv MA 7570\r\n>
17-02-28 19:43:42.438 -08 000000060 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:42.438 -08 000000010 INF: X Motor: WaitUntilStopped 60184
17-02-28 19:43:42.438 -08 000000060 INF: Y Motor: Set target position to 5953351 encoder counts
17-02-28 19:43:42.438 -08 000000060 INF: Y Motor: Xmit s r0xca 5953351\r
17-02-28 19:43:42.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:42.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 21 of 30 seconds left===================
17-02-28 19:43:42.500 -08 000000060 INF: Y Motor: Recv ok\r
17-02-28 19:43:42.500 -08 000000060 INF: Y Motor: Start the move command
17-02-28 19:43:42.500 -08 000000060 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:42.562 -08 000000060 INF: Y Motor: Recv ok\r
17-02-28 19:43:42.562 -08 000000060 INF: Y Motor: WaitUntilStopped 60063
17-02-28 19:43:42.562 -08 000000060 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:42.686 -08 000000060 INF: Y Motor: Unshifted Position: 5878495
17-02-28 19:43:42.736 -08 000000060 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:42.861 -08 000000060 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:43.000 -08 000000060 INF: Y Motor: Unshifted Position: 5953349
17-02-28 19:43:43.000 -08 000000060 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:43.000 -08 000000060 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:43.062 -08 000000060 INF: Y Motor: Recv v 0\r
17-02-28 19:43:43.062 -08 000000060 INF: Y Motor: Moved to 64.5335 after 500 ms
17-02-28 19:43:43.062 -08 000000060 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:43.124 -08 000000060 INF: Y Motor: Recv v 4096\r
17-02-28 19:43:43.124 -08 000000060 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:43.124 -08 000000060 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:43.189 -08 000000060 INF: Y Motor: Recv v 0\r
17-02-28 19:43:43.189 -08 000000060 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:43.189 -08 000000060 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:43.189 -08 000000010 INF: X Motor: Xmit PR ER\n
17-02-28 19:43:43.248 -08 000000060 INF: Y Motor: Recv v 402653184\r
17-02-28 19:43:43.248 -08 000000060 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:43:43.248 -08 000000060 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:43.248 -08 000000060 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:43.248 -08 000000010 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:43:43.248 -08 000000010 INF: X Motor: Moved to 77.4814 after 810 ms
17-02-28 19:43:43.248 -08 000000010 INF: ======================================
17-02-28 19:43:43.312 -08 000000060 INF: Y Motor: Recv v 0\r
17-02-28 19:43:43.312 -08 000000060 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:43.312 -08 000000060 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:43.312 -08 000000060 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:43.376 -08 000000060 INF: Y Motor: Recv ok\r
17-02-28 19:43:43.376 -08 000000060 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:43.376 -08 000000060 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:43.435 -08 000000060 INF: Y Motor: Recv ok\r
17-02-28 19:43:43.435 -08 000000060 INF: ======================================
17-02-28 19:43:43.436 -08 000000050 INF: ===================Move X,Y===================
17-02-28 19:43:43.437 -08 000000050 INF: ======================================
17-02-28 19:43:43.438 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:43.439 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:43.439 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:43:43.439 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:43:43.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:43.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 20 of 30 seconds left===================
17-02-28 19:43:43.500 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:43:43.500 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:43:43.561 -08 000000083 INF: FPGA: Recv ZFREQCL
17-02-28 19:43:43.561 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Reporting Motor Positions===================
17-02-28 19:43:43.561 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:43.561 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:43.622 -08 000000104 INF: FPGA: Recv TDIYERD 6453352
17-02-28 19:43:43.622 -08 000000042 INF: Before scan, Y encoder from FPGA = 6453352 counts (64.534 mm)
17-02-28 19:43:43.622 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:43.623 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:43.624 -08 000000093 INF: ===================Set YMotor gains for scans===================
17-02-28 19:43:43.624 -08 000000053 INF: ===================TDI Scan Setup===================
17-02-28 19:43:43.624 -08 000000093 INF: ======================================
17-02-28 19:43:43.625 -08 000000053 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:43:43.625 -08 000000053 INF: ===================TDI Scan Setup===================
17-02-28 19:43:43.627 -08 000000053 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:43.627 -08 000000053 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:43:43.627 -08 000000053 INF: FPGA: Xmit TDIYPOS 6433351\n
17-02-28 19:43:43.686 -08 000000039 INF: FPGA: Recv TDIYPOS
17-02-28 19:43:43.687 -08 000000053 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:43.688 -08 000000053 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:43:43.688 -08 000000053 INF: FPGA: Xmit TDIYARM2 3072 1 1\n
17-02-28 19:43:43.746 -08 000000086 INF: FPGA: Recv TDIYARM2
17-02-28 19:43:43.746 -08 000000053 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:43.747 -08 000000053 INF: ===================TDI Scan Setup===================
17-02-28 19:43:43.749 -08 000000053 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:43:43.749 -08 000000053 INF: ===================TDI Scan Setup===================
17-02-28 19:43:43.750 -08 000000053 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:43.751 -08 000000053 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:43.752 -08 000000053 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:44.120 -08 000000053 INF: Camera #0 AttachBuffer (imageDataPtr = 74572887352 imgPtr = 74572887352 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:44.120 -08 000000053 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:44.121 -08 000000053 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:44.136 -08 000000053 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:44.138 -08 000000053 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:44.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:44.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 19 of 30 seconds left===================
17-02-28 19:43:44.506 -08 000000053 INF: Camera #2 AttachBuffer (imageDataPtr = 75511411392 imgPtr = 74774213944 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:44.507 -08 000000053 INF: CameraArmTDI CameraBaseSensorPath: 2 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:44.507 -08 000000053 INF: CameraArmTDI CameraBaseSensorPath: 2... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:44.522 -08 000000053 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:44.523 -08 000000053 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:44.525 -08 000000053 INF: ===================TDI Scan Setup===================
17-02-28 19:43:44.526 -08 000000053 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:44.527 -08 000000053 INF: ===================TDI Scan Setup, Serial, Delay Next Z Move Until Y===================
17-02-28 19:43:44.527 -08 000000053 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:44.529 -08 000000053 INF: ===================TDI Scan Setup, Serial, Arm Z Motor===================
17-02-28 19:43:44.529 -08 000000053 INF: Z Motor: Entering ArmAbsStepped
17-02-28 19:43:44.529 -08 000000053 INF: Z Motor: Arming to move to -0.0100 mm
17-02-28 19:43:44.529 -08 000000053 INF: FPGA: Xmit ZYT 0 2\n
17-02-28 19:43:44.558 -08 000000064 INF: FPGA: Recv ZYT 
17-02-28 19:43:44.558 -08 000000053 INF: Z Motor: ZARM will arm Z motor and start the ramp when first camera image trigger pulse is sent (past camera clearing lines)
17-02-28 19:43:44.558 -08 000000053 INF: FPGA: Xmit ZARM 2621\n
17-02-28 19:43:44.620 -08 000000094 INF: FPGA: Recv ZARM
17-02-28 19:43:44.620 -08 000000053 INF: Z Motor: ArmAndSetTriggerMode 'ZARM' command took 61.9309 ms
17-02-28 19:43:44.620 -08 000000053 INF: Z Motor: ArmAbsStepped took 91.1209 ms
17-02-28 19:43:44.620 -08 000000053 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:44.621 -08 000000053 INF: ===================TDI Scan Setup===================
17-02-28 19:43:44.622 -08 000000053 INF: ======================================
17-02-28 19:43:44.623 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:44.624 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:44.624 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:44.625 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:44.626 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:44.626 -08 000000104 INF: ===================Move Excitation Filter 2 (A) to 'OD0.2'===================
17-02-28 19:43:44.626 -08 000000079 INF: ===================Move Excitation Filter 1 (G) to 'OD0.2'===================
17-02-28 19:43:44.626 -08 000000104 INF: Excitation Filter 2: Moving 'A' to index 5 (OD0.2)
17-02-28 19:43:44.626 -08 000000104 INF: Excitation Filter 2: Moving to 225.0000 degrees
17-02-28 19:43:44.627 -08 000000079 INF: Excitation Filter 1: Moving 'G' to index 5 (OD0.2)
17-02-28 19:43:44.627 -08 000000079 INF: Excitation Filter 1: Moving to 225.0000 degrees
17-02-28 19:43:44.627 -08 000000079 INF: Excitation Filter 1: Moving -107 steps
17-02-28 19:43:44.627 -08 000000079 INF: FPGA: Xmit EX1MV -107\n
17-02-28 19:43:44.627 -08 000000104 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:43:44.628 -08 000000104 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:43:45.058 -08 000000054 INF: FPGA: Recv EX1MV
17-02-28 19:43:45.058 -08 000000054 INF: FPGA: Recv EX2MV
17-02-28 19:43:45.058 -08 000000104 INF: Excitation Filter 2: Moved -107 steps in 431.3334 ms
17-02-28 19:43:45.058 -08 000000104 INF: Excitation Filter 2: Moved to 224.7190 degrees (target was 225.0000) in 431.4502 ms
17-02-28 19:43:45.058 -08 000000079 INF: Excitation Filter 1: Moved -107 steps in 431.3418 ms
17-02-28 19:43:45.058 -08 000000104 INF: Excitation Filter 2: Moved 'A' to index 5 (OD0.2) in 431.5171 ms
17-02-28 19:43:45.058 -08 000000079 INF: Excitation Filter 1: Moved to 224.7190 degrees (target was 225.0000) in 431.4407 ms
17-02-28 19:43:45.058 -08 000000079 INF: Excitation Filter 1: Moved 'G' to index 5 (OD0.2) in 431.5239 ms
17-02-28 19:43:45.058 -08 000000104 INF: ======================================
17-02-28 19:43:45.058 -08 000000079 INF: ======================================
17-02-28 19:43:45.059 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:45.061 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:45.062 -08 000000084 INF: ===================Serial===================
17-02-28 19:43:45.062 -08 000000070 INF: ===================Camera TDI===================
17-02-28 19:43:45.062 -08 000000020 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:45.062 -08 000000023 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:45.062 -08 000000023 INF: Y Motor: Moving to 62.9704 mm @1.500 mm/sec, started at 64.5335 mm
17-02-28 19:43:45.062 -08 000000023 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:45.062 -08 000000023 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:45.062 -08 000000084 INF: ===================Serial, FPGA Z Wait===================
17-02-28 19:43:45.062 -08 000000070 INF: ===================Camera TDI, Parallel===================
17-02-28 19:43:45.062 -08 000000084 INF: FPGA: Xmit ZWAIT\n
17-02-28 19:43:45.062 -08 000000020 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:43:45.063 -08 000000065 INF: ===================Camera TDI===================
17-02-28 19:43:45.063 -08 000000101 INF: ===================Camera TDI===================
17-02-28 19:43:45.064 -08 000000020 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:43:45.064 -08 000000101 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:45.064 -08 000000101 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:45.065 -08 000000065 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:45.065 -08 000000065 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:45.122 -08 000000023 INF: Y Motor: Recv ok\r
17-02-28 19:43:45.122 -08 000000023 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:45.122 -08 000000023 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:45.184 -08 000000023 INF: Y Motor: Recv ok\r
17-02-28 19:43:45.184 -08 000000023 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:45.214 -08 000000101 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:45.214 -08 000000101 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:45.215 -08 000000065 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:45.215 -08 000000065 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:45.248 -08 000000023 INF: Y Motor: Recv v 0\r
17-02-28 19:43:45.248 -08 000000023 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:45.248 -08 000000023 INF: Y Motor: Set target position to 5797042 encoder counts
17-02-28 19:43:45.248 -08 000000023 INF: Y Motor: Xmit s r0xca 5797042\r
17-02-28 19:43:45.307 -08 000000023 INF: Y Motor: Recv ok\r
17-02-28 19:43:45.307 -08 000000023 INF: Y Motor: Start the move command
17-02-28 19:43:45.307 -08 000000023 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:45.364 -08 000000101 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:45.364 -08 000000101 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:45.365 -08 000000065 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:45.365 -08 000000065 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:45.370 -08 000000023 INF: Y Motor: Recv ok\r
17-02-28 19:43:45.370 -08 000000023 INF: Y Motor: WaitUntilStopped 61042
17-02-28 19:43:45.370 -08 000000023 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:45.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:45.451 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 18 of 30 seconds left===================
17-02-28 19:43:45.494 -08 000000023 INF: Y Motor: Unshifted Position: 5935280
17-02-28 19:43:45.514 -08 000000101 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:45.514 -08 000000101 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:45.515 -08 000000065 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:45.515 -08 000000065 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:45.544 -08 000000023 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:45.664 -08 000000101 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:45.664 -08 000000101 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:45.664 -08 000000101 INF: ===================Camera #2 Frame #1===================
17-02-28 19:43:45.665 -08 000000065 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:45.665 -08 000000065 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:45.665 -08 000000065 INF: ===================Camera #0 Frame #1===================
17-02-28 19:43:45.669 -08 000000023 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:45.808 -08 000000023 INF: Y Motor: Unshifted Position: 5888478
17-02-28 19:43:45.817 -08 000000101 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:43:45.817 -08 000000101 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:43:45.817 -08 000000101 INF: ===================Camera #2 Frame #3===================
17-02-28 19:43:45.818 -08 000000065 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 2, frameCount = 3.
17-02-28 19:43:45.818 -08 000000065 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:43:45.818 -08 000000065 INF: ===================Camera #0 Frame #3===================
17-02-28 19:43:45.858 -08 000000023 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:45.973 -08 000000101 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:45.973 -08 000000101 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:45.973 -08 000000101 INF: ===================Camera #2 Frame #4===================
17-02-28 19:43:45.974 -08 000000065 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:45.974 -08 000000065 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:45.974 -08 000000065 INF: ===================Camera #0 Frame #4===================
17-02-28 19:43:45.982 -08 000000023 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:46.119 -08 000000023 INF: Y Motor: Unshifted Position: 5841919
17-02-28 19:43:46.127 -08 000000101 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:46.127 -08 000000101 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:46.127 -08 000000101 INF: ===================Camera #2 Frame #5===================
17-02-28 19:43:46.128 -08 000000065 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:46.128 -08 000000065 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:46.128 -08 000000065 INF: ===================Camera #0 Frame #5===================
17-02-28 19:43:46.169 -08 000000023 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:46.181 -08 000000009 INF: FPGA: Recv ZWAIT 
17-02-28 19:43:46.181 -08 000000084 INF: ===================Serial===================
17-02-28 19:43:46.183 -08 000000084 INF: ===================Serial, Confirm position Z Motor===================
17-02-28 19:43:46.183 -08 000000084 INF: ===================Serial===================
17-02-28 19:43:46.184 -08 000000084 INF: ======================================
17-02-28 19:43:46.243 -08 000000048 INF: FPGA: Recv TDIYWAIT
17-02-28 19:43:46.243 -08 000000020 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:46.245 -08 000000020 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:43:46.245 -08 000000058 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:43:46.246 -08 000000053 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:43:46.246 -08 000000058 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:43:46.246 -08 000000058 INF: Excitation Filter 1: Moving to 0.0000 degrees
17-02-28 19:43:46.246 -08 000000058 INF: Excitation Filter 1: Moving 107 steps
17-02-28 19:43:46.246 -08 000000058 INF: FPGA: Xmit EX1MV 107\n
17-02-28 19:43:46.246 -08 000000053 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:43:46.246 -08 000000053 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:43:46.246 -08 000000053 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:43:46.247 -08 000000053 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:43:46.280 -08 000000101 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:46.280 -08 000000101 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:46.280 -08 000000101 INF: ===================Camera #2 Frame #6===================
17-02-28 19:43:46.281 -08 000000065 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:46.281 -08 000000065 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:46.281 -08 000000065 INF: ===================Camera #0 Frame #6===================
17-02-28 19:43:46.283 -08 000000101 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:46.284 -08 000000065 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:46.284 -08 000000101 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:46.285 -08 000000065 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:46.295 -08 000000023 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:46.308 -08 000000101 INF: Camera #2 ReleaseBuffer
17-02-28 19:43:46.308 -08 000000101 INF: ===================Camera TDI===================
17-02-28 19:43:46.309 -08 000000101 INF: ======================================
17-02-28 19:43:46.332 -08 000000065 INF: Camera #0 ReleaseBuffer
17-02-28 19:43:46.332 -08 000000065 INF: ===================Camera TDI===================
17-02-28 19:43:46.333 -08 000000065 INF: ======================================
17-02-28 19:43:46.334 -08 000000070 INF: ===================Camera TDI===================
17-02-28 19:43:46.336 -08 000000070 INF: ======================================
17-02-28 19:43:46.431 -08 000000023 INF: Y Motor: Unshifted Position: 5797065
17-02-28 19:43:46.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:46.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 17 of 30 seconds left===================
17-02-28 19:43:46.481 -08 000000023 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:46.616 -08 000000074 INF: FPGA: Recv EX1MV
17-02-28 19:43:46.616 -08 000000058 INF: Excitation Filter 1: Moved 107 steps in 370.0906 ms
17-02-28 19:43:46.616 -08 000000058 INF: Excitation Filter 1: Moved to 0.0000 degrees (target was 0.0000) in 370.2031 ms
17-02-28 19:43:46.616 -08 000000058 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 370.2806 ms
17-02-28 19:43:46.616 -08 000000058 INF: ======================================
17-02-28 19:43:46.618 -08 000000023 INF: Y Motor: Unshifted Position: 5797042
17-02-28 19:43:46.618 -08 000000023 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:46.618 -08 000000023 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:46.681 -08 000000083 INF: FPGA: Recv EX2MV
17-02-28 19:43:46.681 -08 000000053 INF: Excitation Filter 2: Moved 107 steps in 434.8769 ms
17-02-28 19:43:46.681 -08 000000053 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 434.98 ms
17-02-28 19:43:46.681 -08 000000053 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 435.0648 ms
17-02-28 19:43:46.681 -08 000000053 INF: ======================================
17-02-28 19:43:46.682 -08 000000020 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:46.683 -08 000000023 INF: Y Motor: Recv v 0\r
17-02-28 19:43:46.683 -08 000000023 INF: Y Motor: Moved to 62.9704 after 1312 ms
17-02-28 19:43:46.683 -08 000000023 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:46.684 -08 000000020 INF: ======================================
17-02-28 19:43:46.745 -08 000000023 INF: Y Motor: Recv v 4097\r
17-02-28 19:43:46.745 -08 000000023 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:46.745 -08 000000023 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:46.807 -08 000000023 INF: Y Motor: Recv v 0\r
17-02-28 19:43:46.807 -08 000000023 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:46.807 -08 000000023 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:46.869 -08 000000023 INF: Y Motor: Recv v 134217728\r
17-02-28 19:43:46.869 -08 000000023 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:43:46.869 -08 000000023 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:46.869 -08 000000023 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:46.932 -08 000000023 INF: Y Motor: Recv v 0\r
17-02-28 19:43:46.932 -08 000000023 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:46.932 -08 000000023 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:46.932 -08 000000023 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:46.993 -08 000000023 INF: Y Motor: Recv ok\r
17-02-28 19:43:46.993 -08 000000023 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:46.993 -08 000000023 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:47.057 -08 000000023 INF: Y Motor: Recv ok\r
17-02-28 19:43:47.057 -08 000000023 INF: ======================================
17-02-28 19:43:47.058 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:47.059 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:47.060 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:47.060 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:43:47.119 -08 000000101 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:43:47.119 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:47.178 -08 000000088 INF: FPGA: Recv TDIYERD 6297044
17-02-28 19:43:47.178 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:43:47.240 -08 000000084 INF: FPGA: Recv ZADCR 2422
17-02-28 19:43:47.240 -08 000000042 INF: At scan end Y pos = 62.970 and Z pos = -0.010. Y moved -1.363 mm
17-02-28 19:43:47.240 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:43:47.306 -08 000000076 INF: FPGA: Recv TDIPULSES 3073
17-02-28 19:43:47.306 -08 000000042 INF: The FPGA sent 3072 triggers to the camera ; expected 3072
17-02-28 19:43:47.306 -08 000000042 INF: TDIScan finished after 5054.2642 ms
17-02-28 19:43:47.306 -08 000000042 INF: Image[0]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:47.306 -08 000000042 INF: Image[2]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:47.306 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:43:47.367 -08 000000051 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:43:47.367 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:47.368 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:47.369 -08 000000064 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:43:47.369 -08 000000023 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:43:47.369 -08 000000086 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:43:47.369 -08 000000064 INF: ======================================
17-02-28 19:43:47.369 -08 000000086 INF: ======================================
17-02-28 19:43:47.369 -08 000000023 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:43:47.369 -08 000000023 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:43:47.431 -08 000000023 INF: Y Motor: Recv ok\r
17-02-28 19:43:47.431 -08 000000023 INF: ======================================
17-02-28 19:43:47.432 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:47.433 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:47.434 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(A)===================
17-02-28 19:43:47.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:47.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 16 of 30 seconds left===================
17-02-28 19:43:47.464 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:47.464 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(G)===================
17-02-28 19:43:47.492 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:47.492 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(T)===================
17-02-28 19:43:47.518 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:47.518 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(C)===================
17-02-28 19:43:47.542 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:47.542 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:47.543 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:47.544 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, ETF: Extracting coords===================
17-02-28 19:43:47.551 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:47.552 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:47.552 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point, Extracting metrics===================
17-02-28 19:43:48.247 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:48.269 -08 000000042 INF: ETF for image Index#0: Best Z position at bottom surface = -0.0899870719156379Best Z position at top surface = -0.161260107987528Best Z position at top surface + compensator offset = -0.138560107987528 C:1,L:4,T
17-02-28 19:43:48.269 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 0 is -0.161260107987528
17-02-28 19:43:48.269 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 0 is 63.98279
17-02-28 19:43:48.270 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 1 is -0.0899870719156379
17-02-28 19:43:48.270 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 1 is 63.63986
17-02-28 19:43:48.270 -08 000000042 INF: Z-height at LaneTopSurface is -0.161260107987528.
17-02-28 19:43:48.270 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:48.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:48.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 15 of 30 seconds left===================
17-02-28 19:43:48.538 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:43:48.538 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:43:48.553 -08 000000070 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:48.553 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:48.555 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:48.555 -08 000000042 INF: Lane 4, LaneTopSurface Surface was not flagged for detilt operations after ETF. Moving to default tilt positions: m1=4.998974, m2=5.393944, m3=5.34035
17-02-28 19:43:48.555 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:48.556 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:48.556 -08 000000087 INF: ===================Move Tilt Motor 1===================
17-02-28 19:43:48.556 -08 000000063 INF: ===================Move Tilt Motor 2===================
17-02-28 19:43:48.556 -08 000000094 INF: ===================Move Tilt Motor 3===================
17-02-28 19:43:48.557 -08 000000094 INF: Tilt Motor 3: Moving to 5.3404 mm, started at 5.3391 mm, delta = 0.0013 mm
17-02-28 19:43:48.557 -08 000000087 INF: ======================================
17-02-28 19:43:48.557 -08 000000094 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:48.557 -08 000000063 INF: ======================================
17-02-28 19:43:48.616 -08 000000048 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:48.616 -08 000000094 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:48.616 -08 000000094 INF: Tilt Motor 3: Moving to 21025 encoder counts
17-02-28 19:43:48.616 -08 000000094 INF: FPGA: Xmit T3MOVETO 21025\n
17-02-28 19:43:48.739 -08 000000047 INF: FPGA: Recv T3MOVETO 0
17-02-28 19:43:48.739 -08 000000094 INF: Tilt Motor 3: To move from 5.339 to 5.340 (0.001 mm) should take 1 steps, but required 0 steps (0.000 mm). Slippage = -0.002 mm (-1.20%)
17-02-28 19:43:48.739 -08 000000094 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:48.801 -08 000000010 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:48.801 -08 000000094 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:48.801 -08 000000094 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:48.864 -08 000000079 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:48.864 -08 000000094 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:48.864 -08 000000094 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:48.925 -08 000000077 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:48.925 -08 000000094 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:48.925 -08 000000094 INF: Tilt Motor 3: After move to 5.3404, error = -0.0013, min/max error = -0.0017/0.0016, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:48.925 -08 000000094 INF: Tilt Motor 3: Moved to 5.3391 after 368.4027 ms
17-02-28 19:43:48.925 -08 000000094 INF: ======================================
17-02-28 19:43:48.926 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:48.927 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:48.928 -08 000000042 INF: ETF Best Z: -0.1385601 mm (36322 DAC)
17-02-28 19:43:48.934 -08 000000042 INF: Transformed XStagePosition from 80.24564 mm to 80.2456359863281 mm.
17-02-28 19:43:48.942 -08 000000042 INF: Transformed StartingYStagePosition from 40.4930030822754 mm to 40.4930030822754 mm.
17-02-28 19:43:48.942 -08 000000042 INF: Transformed StartingYStageITFPosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:48.943 -08 000000042 INF: Transformed TriggerYStagePosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:48.943 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:48.943 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:48.946 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:43:48.947 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:43:48.947 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:43:48.991 -08 000000048 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:48.991 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:48.991 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:48.991 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.0100 mm
17-02-28 19:43:48.991 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:43:49.053 -08 000000020 INF: FPGA: Recv ZTRG 
17-02-28 19:43:49.053 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:43:49.112 -08 000000039 INF: FPGA: Recv ZYT 
17-02-28 19:43:49.112 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:43:49.112 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:43:49.178 -08 000000069 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:43:49.178 -08 000000069 INF: FPGA: Recv ZMV 
17-02-28 19:43:49.178 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:43:49.178 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 65.8372 ms
17-02-28 19:43:49.178 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:43:49.237 -08 000000050 INF: FPGA: Recv ZDACR 60292
17-02-28 19:43:49.237 -08 000000042 INF: Z Motor: MoveAndTrigger took 245.5695 ms w/comms
17-02-28 19:43:49.237 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:49.237 -08 000000042 INF: Z Motor: MoveAbsStepped took 245.698 ms
17-02-28 19:43:49.237 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:49.238 -08 000000042 INF: Transformed XStagePosition from 80.24564 mm to 80.2456359863281 mm.
17-02-28 19:43:49.247 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:49.247 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:49.247 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:49.247 -08 000000042 INF: Z Motor: Set Z velocity to 0.312 mm/s / 401506 16.16 format
17-02-28 19:43:49.247 -08 000000042 INF: FPGA: Xmit ZSTEP 401506\n
17-02-28 19:43:49.303 -08 000000051 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:49.303 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:49.303 -08 000000042 INF: Transformed XStagePosition from 80.24564 mm to 80.2456359863281 mm.
17-02-28 19:43:49.312 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:49.312 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:49.312 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:49.314 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:49.315 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Populating image tags===================
17-02-28 19:43:49.315 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:49.315 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 3072, channels = A, G, T, C, TDI Z = -230.0 um, section = E_1
17-02-28 19:43:49.315 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:49.316 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:49.317 -08 000000067 INF: ===================MoveEmissionFilters===================
17-02-28 19:43:49.317 -08 000000064 INF: ===================Move X,Y===================
17-02-28 19:43:49.317 -08 000000093 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:49.317 -08 000000064 INF: ===================Move X,Y, Parallel===================
17-02-28 19:43:49.317 -08 000000074 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:49.318 -08 000000065 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:49.318 -08 000000039 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:49.318 -08 000000093 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:49.318 -08 000000070 INF: ===================Move X Motor without settling===================
17-02-28 19:43:49.318 -08 000000065 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:49.318 -08 000000070 INF: X Motor: Xmit PR VM\n
17-02-28 19:43:49.318 -08 000000039 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:49.319 -08 000000047 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:49.319 -08 000000074 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:49.319 -08 000000047 INF: Y Motor: Moving to 64.5335 mm @25.000 mm/sec, started at 62.9704 mm
17-02-28 19:43:49.319 -08 000000047 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:49.319 -08 000000047 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:49.319 -08 000000050 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:43:49.319 -08 000000048 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:43:49.319 -08 000000060 INF: ===================Move Emission Filter 31(sim) to OutOfPath===================
17-02-28 19:43:49.319 -08 000000048 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:43:49.319 -08 000000025 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:43:49.319 -08 000000009 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:43:49.319 -08 000000079 INF: ===================Move Emission Filter 42(sim) to OutOfPath===================
17-02-28 19:43:49.320 -08 000000058 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:43:49.320 -08 000000084 INF: ===================Move Emission Filter 22(sim) to OutOfPath===================
17-02-28 19:43:49.320 -08 000000050 INF: ======================================
17-02-28 19:43:49.320 -08 000000009 INF: ======================================
17-02-28 19:43:49.320 -08 000000084 INF: ======================================
17-02-28 19:43:49.320 -08 000000058 INF: ======================================
17-02-28 19:43:49.321 -08 000000060 INF: ======================================
17-02-28 19:43:49.321 -08 000000025 INF: ======================================
17-02-28 19:43:49.322 -08 000000074 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:49.322 -08 000000065 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:49.322 -08 000000048 INF: ======================================
17-02-28 19:43:49.323 -08 000000079 INF: ======================================
17-02-28 19:43:49.323 -08 000000074 INF: ======================================
17-02-28 19:43:49.323 -08 000000065 INF: ======================================
17-02-28 19:43:49.324 -08 000000093 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:49.324 -08 000000039 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:49.325 -08 000000093 INF: ======================================
17-02-28 19:43:49.325 -08 000000039 INF: ======================================
17-02-28 19:43:49.326 -08 000000067 INF: ======================================
17-02-28 19:43:49.364 -08 000000070 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:43:49.364 -08 000000070 INF: X Motor: Xmit PR VI\n
17-02-28 19:43:49.364 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:43:49.364 -08 000000047 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:49.364 -08 000000047 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:49.426 -08 000000070 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:43:49.426 -08 000000070 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:43:49.426 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:43:49.426 -08 000000070 INF: X Motor: Moving to 80.2456 mm @15.000 mm/sec, started at 77.4814 mm
17-02-28 19:43:49.426 -08 000000047 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:49.426 -08 000000070 INF: X Motor: Xmit MA 8702\n
17-02-28 19:43:49.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:49.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 14 of 30 seconds left===================
17-02-28 19:43:49.491 -08 000000070 INF: X Motor: Recv MA 8702\r\n>
17-02-28 19:43:49.491 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:43:49.491 -08 000000047 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:49.491 -08 000000070 INF: X Motor: WaitUntilStopped 60184
17-02-28 19:43:49.491 -08 000000047 INF: Y Motor: Set target position to 5953351 encoder counts
17-02-28 19:43:49.491 -08 000000047 INF: Y Motor: Xmit s r0xca 5953351\r
17-02-28 19:43:49.553 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:43:49.553 -08 000000047 INF: Y Motor: Start the move command
17-02-28 19:43:49.553 -08 000000047 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:49.615 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:43:49.615 -08 000000047 INF: Y Motor: WaitUntilStopped 60063
17-02-28 19:43:49.615 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:49.739 -08 000000047 INF: Y Motor: Unshifted Position: 5878108
17-02-28 19:43:49.789 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:49.913 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:50.052 -08 000000047 INF: Y Motor: Unshifted Position: 5953353
17-02-28 19:43:50.052 -08 000000047 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:50.052 -08 000000047 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:50.115 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:43:50.115 -08 000000047 INF: Y Motor: Moved to 64.5335 after 500 ms
17-02-28 19:43:50.115 -08 000000047 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:50.177 -08 000000047 INF: Y Motor: Recv v 4096\r
17-02-28 19:43:50.177 -08 000000047 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:50.177 -08 000000047 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:50.237 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:43:50.237 -08 000000047 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:50.237 -08 000000070 INF: X Motor: Xmit PR ER\n
17-02-28 19:43:50.237 -08 000000047 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:50.302 -08 000000047 INF: Y Motor: Recv v 402653184\r
17-02-28 19:43:50.302 -08 000000047 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:43:50.302 -08 000000047 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:50.302 -08 000000047 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:50.302 -08 000000070 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:43:50.302 -08 000000070 INF: X Motor: Moved to 80.2451 after 811 ms
17-02-28 19:43:50.302 -08 000000070 INF: ======================================
17-02-28 19:43:50.364 -08 000000047 INF: Y Motor: Recv v 0\r
17-02-28 19:43:50.364 -08 000000047 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:50.364 -08 000000047 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:50.364 -08 000000047 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:50.426 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:43:50.426 -08 000000047 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:50.426 -08 000000047 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:50.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:50.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 13 of 30 seconds left===================
17-02-28 19:43:50.488 -08 000000047 INF: Y Motor: Recv ok\r
17-02-28 19:43:50.488 -08 000000047 INF: ======================================
17-02-28 19:43:50.489 -08 000000064 INF: ===================Move X,Y===================
17-02-28 19:43:50.490 -08 000000064 INF: ======================================
17-02-28 19:43:50.491 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:50.492 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:50.492 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:43:50.492 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:43:50.551 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:43:50.551 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:43:50.610 -08 000000064 INF: FPGA: Recv ZFREQCL
17-02-28 19:43:50.610 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Reporting Motor Positions===================
17-02-28 19:43:50.610 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:50.610 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:50.672 -08 000000009 INF: FPGA: Recv TDIYERD 6453353
17-02-28 19:43:50.672 -08 000000042 INF: Before scan, Y encoder from FPGA = 6453353 counts (64.534 mm)
17-02-28 19:43:50.672 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:50.673 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:50.673 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:50.673 -08 000000069 INF: ===================Set YMotor gains for scans===================
17-02-28 19:43:50.674 -08 000000069 INF: ======================================
17-02-28 19:43:50.674 -08 000000099 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:43:50.674 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:50.676 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:50.676 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:43:50.677 -08 000000099 INF: FPGA: Xmit TDIYPOS 6433351\n
17-02-28 19:43:50.737 -08 000000074 INF: FPGA: Recv TDIYPOS
17-02-28 19:43:50.737 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:50.739 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:43:50.739 -08 000000099 INF: FPGA: Xmit TDIYARM2 3072 1 1\n
17-02-28 19:43:50.799 -08 000000104 INF: FPGA: Recv TDIYARM2
17-02-28 19:43:50.799 -08 000000099 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:50.800 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:50.802 -08 000000099 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:43:50.802 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:50.803 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:50.804 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:50.805 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:51.173 -08 000000099 INF: Camera #0 AttachBuffer (imageDataPtr = 74572887352 imgPtr = 74572887352 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:51.173 -08 000000099 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:51.173 -08 000000099 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:51.188 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:51.190 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:51.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:51.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 12 of 30 seconds left===================
17-02-28 19:43:51.558 -08 000000099 INF: Camera #2 AttachBuffer (imageDataPtr = 75511411392 imgPtr = 74774213944 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:51.558 -08 000000099 INF: CameraArmTDI CameraBaseSensorPath: 2 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:51.559 -08 000000099 INF: CameraArmTDI CameraBaseSensorPath: 2... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:51.573 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:51.574 -08 000000099 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:51.576 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:51.577 -08 000000099 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:51.578 -08 000000099 INF: ===================TDI Scan Setup, Serial, Delay Next Z Move Until Y===================
17-02-28 19:43:51.578 -08 000000099 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:51.579 -08 000000099 INF: ===================TDI Scan Setup, Serial, Arm Z Motor===================
17-02-28 19:43:51.580 -08 000000099 INF: Z Motor: Entering ArmAbsStepped
17-02-28 19:43:51.580 -08 000000099 INF: Z Motor: Arming to move to -0.0100 mm
17-02-28 19:43:51.580 -08 000000099 INF: FPGA: Xmit ZYT 0 2\n
17-02-28 19:43:51.609 -08 000000083 INF: FPGA: Recv ZYT 
17-02-28 19:43:51.609 -08 000000099 INF: Z Motor: ZARM will arm Z motor and start the ramp when first camera image trigger pulse is sent (past camera clearing lines)
17-02-28 19:43:51.609 -08 000000099 INF: FPGA: Xmit ZARM 2621\n
17-02-28 19:43:51.674 -08 000000104 INF: FPGA: Recv ZARM
17-02-28 19:43:51.674 -08 000000099 INF: Z Motor: ArmAndSetTriggerMode 'ZARM' command took 64.9229 ms
17-02-28 19:43:51.674 -08 000000099 INF: Z Motor: ArmAbsStepped took 94.1695 ms
17-02-28 19:43:51.674 -08 000000099 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:51.675 -08 000000099 INF: ===================TDI Scan Setup===================
17-02-28 19:43:51.676 -08 000000099 INF: ======================================
17-02-28 19:43:51.677 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:51.678 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:51.678 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:51.679 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:51.680 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:51.680 -08 000000077 INF: ===================Move Excitation Filter 2 (A) to 'OD0.2'===================
17-02-28 19:43:51.680 -08 000000087 INF: ===================Move Excitation Filter 1 (G) to 'OD0.2'===================
17-02-28 19:43:51.680 -08 000000077 INF: Excitation Filter 2: Moving 'A' to index 5 (OD0.2)
17-02-28 19:43:51.680 -08 000000077 INF: Excitation Filter 2: Moving to 225.0000 degrees
17-02-28 19:43:51.680 -08 000000077 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:43:51.681 -08 000000087 INF: Excitation Filter 1: Moving 'G' to index 5 (OD0.2)
17-02-28 19:43:51.681 -08 000000087 INF: Excitation Filter 1: Moving to 225.0000 degrees
17-02-28 19:43:51.681 -08 000000087 INF: Excitation Filter 1: Moving -107 steps
17-02-28 19:43:51.681 -08 000000077 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:43:51.682 -08 000000087 INF: FPGA: Xmit EX1MV -107\n
17-02-28 19:43:52.046 -08 000000063 INF: FPGA: Recv EX2MV
17-02-28 19:43:52.046 -08 000000063 INF: FPGA: Recv EX1MV
17-02-28 19:43:52.046 -08 000000077 INF: Excitation Filter 2: Moved -107 steps in 365.3731 ms
17-02-28 19:43:52.046 -08 000000087 INF: Excitation Filter 1: Moved -107 steps in 365.2796 ms
17-02-28 19:43:52.046 -08 000000087 INF: Excitation Filter 1: Moved to 224.7190 degrees (target was 225.0000) in 365.4016 ms
17-02-28 19:43:52.046 -08 000000087 INF: Excitation Filter 1: Moved 'G' to index 5 (OD0.2) in 365.5103 ms
17-02-28 19:43:52.046 -08 000000077 INF: Excitation Filter 2: Moved to 224.7190 degrees (target was 225.0000) in 365.4719 ms
17-02-28 19:43:52.046 -08 000000077 INF: Excitation Filter 2: Moved 'A' to index 5 (OD0.2) in 365.6708 ms
17-02-28 19:43:52.046 -08 000000087 INF: ======================================
17-02-28 19:43:52.046 -08 000000077 INF: ======================================
17-02-28 19:43:52.048 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:52.049 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:52.050 -08 000000023 INF: ===================Serial===================
17-02-28 19:43:52.050 -08 000000039 INF: ===================Camera TDI===================
17-02-28 19:43:52.050 -08 000000025 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:52.050 -08 000000079 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:52.050 -08 000000079 INF: Y Motor: Moving to 62.9704 mm @1.500 mm/sec, started at 64.5335 mm
17-02-28 19:43:52.050 -08 000000079 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:52.050 -08 000000079 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:52.050 -08 000000023 INF: ===================Serial, FPGA Z Wait===================
17-02-28 19:43:52.050 -08 000000039 INF: ===================Camera TDI, Parallel===================
17-02-28 19:43:52.050 -08 000000023 INF: FPGA: Xmit ZWAIT\n
17-02-28 19:43:52.050 -08 000000025 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:43:52.051 -08 000000054 INF: ===================Camera TDI===================
17-02-28 19:43:52.051 -08 000000035 INF: ===================Camera TDI===================
17-02-28 19:43:52.052 -08 000000035 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:52.052 -08 000000035 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:52.053 -08 000000054 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:52.053 -08 000000054 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:52.053 -08 000000025 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:43:52.110 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:43:52.110 -08 000000079 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:52.110 -08 000000079 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:52.172 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:43:52.172 -08 000000079 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:52.202 -08 000000035 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:52.202 -08 000000035 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:52.203 -08 000000054 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:52.203 -08 000000054 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:52.234 -08 000000079 INF: Y Motor: Recv v 0\r
17-02-28 19:43:52.234 -08 000000079 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:52.234 -08 000000079 INF: Y Motor: Set target position to 5797042 encoder counts
17-02-28 19:43:52.234 -08 000000079 INF: Y Motor: Xmit s r0xca 5797042\r
17-02-28 19:43:52.299 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:43:52.299 -08 000000079 INF: Y Motor: Start the move command
17-02-28 19:43:52.299 -08 000000079 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:52.352 -08 000000035 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:52.352 -08 000000035 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:52.353 -08 000000054 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:52.353 -08 000000054 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:52.361 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:43:52.361 -08 000000079 INF: Y Motor: WaitUntilStopped 61042
17-02-28 19:43:52.361 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:52.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:52.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 11 of 30 seconds left===================
17-02-28 19:43:52.485 -08 000000079 INF: Y Motor: Unshifted Position: 5935381
17-02-28 19:43:52.502 -08 000000035 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:52.502 -08 000000035 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:52.503 -08 000000054 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:52.503 -08 000000054 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:52.535 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:52.652 -08 000000035 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:52.652 -08 000000035 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:52.652 -08 000000035 INF: ===================Camera #2 Frame #1===================
17-02-28 19:43:52.653 -08 000000054 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 0, frameCount = 1.
17-02-28 19:43:52.653 -08 000000054 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 1
17-02-28 19:43:52.653 -08 000000054 INF: ===================Camera #0 Frame #1===================
17-02-28 19:43:52.659 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:52.798 -08 000000079 INF: Y Motor: Unshifted Position: 5888830
17-02-28 19:43:52.805 -08 000000035 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 1, frameCount = 2.
17-02-28 19:43:52.805 -08 000000035 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 2
17-02-28 19:43:52.805 -08 000000035 INF: ===================Camera #2 Frame #2===================
17-02-28 19:43:52.806 -08 000000054 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 1, frameCount = 2.
17-02-28 19:43:52.806 -08 000000054 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 3
17-02-28 19:43:52.806 -08 000000054 INF: ===================Camera #0 Frame #3===================
17-02-28 19:43:52.848 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:52.958 -08 000000035 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:52.958 -08 000000035 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:52.958 -08 000000035 INF: ===================Camera #2 Frame #4===================
17-02-28 19:43:52.963 -08 000000054 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 3, frameCount = 4.
17-02-28 19:43:52.963 -08 000000054 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 4
17-02-28 19:43:52.963 -08 000000054 INF: ===================Camera #0 Frame #4===================
17-02-28 19:43:52.972 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:53.108 -08 000000079 INF: Y Motor: Unshifted Position: 5841820
17-02-28 19:43:53.115 -08 000000035 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:53.115 -08 000000035 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:53.115 -08 000000035 INF: ===================Camera #2 Frame #5===================
17-02-28 19:43:53.116 -08 000000054 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 4, frameCount = 5.
17-02-28 19:43:53.116 -08 000000054 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 5
17-02-28 19:43:53.116 -08 000000054 INF: ===================Camera #0 Frame #5===================
17-02-28 19:43:53.158 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:53.168 -08 000000088 INF: FPGA: Recv ZWAIT 
17-02-28 19:43:53.168 -08 000000088 INF: FPGA: Recv TDIYWAIT
17-02-28 19:43:53.168 -08 000000023 INF: ===================Serial===================
17-02-28 19:43:53.168 -08 000000025 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:53.170 -08 000000023 INF: ===================Serial, Confirm position Z Motor===================
17-02-28 19:43:53.170 -08 000000025 INF: ===================Wait for frames then close excitation filters, Close excitation filters===================
17-02-28 19:43:53.170 -08 000000023 INF: ===================Serial===================
17-02-28 19:43:53.171 -08 000000099 INF: ===================Move Excitation Filter 1 to 'BlockPosition'===================
17-02-28 19:43:53.171 -08 000000010 INF: ===================Move Excitation Filter 2 to 'BlockPosition'===================
17-02-28 19:43:53.171 -08 000000099 INF: Excitation Filter 1: Moving 'Excitation Filter 1' to index 0 (BlockPosition)
17-02-28 19:43:53.171 -08 000000099 INF: Excitation Filter 1: Moving to 0.0000 degrees
17-02-28 19:43:53.171 -08 000000099 INF: Excitation Filter 1: Moving 107 steps
17-02-28 19:43:53.171 -08 000000010 INF: Excitation Filter 2: Moving 'Excitation Filter 2' to index 0 (BlockPosition)
17-02-28 19:43:53.171 -08 000000099 INF: FPGA: Xmit EX1MV 107\n
17-02-28 19:43:53.171 -08 000000010 INF: Excitation Filter 2: Moving to 0.0000 degrees
17-02-28 19:43:53.171 -08 000000010 INF: Excitation Filter 2: Moving 107 steps
17-02-28 19:43:53.172 -08 000000023 INF: ======================================
17-02-28 19:43:53.172 -08 000000010 INF: FPGA: Xmit EX2MV 107\n
17-02-28 19:43:53.269 -08 000000035 INF: Camera #2 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:53.269 -08 000000035 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:53.269 -08 000000054 INF: Camera #0 called GetTransferInfo, newestFrameIndex = 5, frameCount = 6.
17-02-28 19:43:53.269 -08 000000054 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 6
17-02-28 19:43:53.269 -08 000000035 INF: ===================Camera #2 Frame #6===================
17-02-28 19:43:53.269 -08 000000054 INF: ===================Camera #0 Frame #6===================
17-02-28 19:43:53.273 -08 000000054 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:53.273 -08 000000035 INF: Camera complete - got 6 frames, processed 6 frames, expected 6 frames.
17-02-28 19:43:53.274 -08 000000035 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:53.274 -08 000000054 INF: ===================CameraTDI Cleanup===================
17-02-28 19:43:53.285 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:53.298 -08 000000035 INF: Camera #2 ReleaseBuffer
17-02-28 19:43:53.298 -08 000000035 INF: ===================Camera TDI===================
17-02-28 19:43:53.299 -08 000000035 INF: ======================================
17-02-28 19:43:53.322 -08 000000054 INF: Camera #0 ReleaseBuffer
17-02-28 19:43:53.322 -08 000000054 INF: ===================Camera TDI===================
17-02-28 19:43:53.323 -08 000000054 INF: ======================================
17-02-28 19:43:53.324 -08 000000039 INF: ===================Camera TDI===================
17-02-28 19:43:53.326 -08 000000039 INF: ======================================
17-02-28 19:43:53.422 -08 000000079 INF: Y Motor: Unshifted Position: 5797064
17-02-28 19:43:53.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:53.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 10 of 30 seconds left===================
17-02-28 19:43:53.472 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:53.544 -08 000000051 INF: FPGA: Recv EX1MV
17-02-28 19:43:53.544 -08 000000051 INF: FPGA: Recv EX2MV
17-02-28 19:43:53.544 -08 000000010 INF: Excitation Filter 2: Moved 107 steps in 372.4427 ms
17-02-28 19:43:53.544 -08 000000099 INF: Excitation Filter 1: Moved 107 steps in 372.6438 ms
17-02-28 19:43:53.544 -08 000000099 INF: Excitation Filter 1: Moved to 0.0000 degrees (target was 0.0000) in 372.7461 ms
17-02-28 19:43:53.544 -08 000000099 INF: Excitation Filter 1: Moved 'Excitation Filter 1' to index 0 (BlockPosition) in 372.8152 ms
17-02-28 19:43:53.544 -08 000000010 INF: Excitation Filter 2: Moved to 0.0000 degrees (target was 0.0000) in 372.5898 ms
17-02-28 19:43:53.544 -08 000000010 INF: Excitation Filter 2: Moved 'Excitation Filter 2' to index 0 (BlockPosition) in 372.9669 ms
17-02-28 19:43:53.544 -08 000000099 INF: ======================================
17-02-28 19:43:53.544 -08 000000010 INF: ======================================
17-02-28 19:43:53.546 -08 000000025 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:53.547 -08 000000025 INF: ======================================
17-02-28 19:43:53.608 -08 000000079 INF: Y Motor: Unshifted Position: 5797041
17-02-28 19:43:53.608 -08 000000079 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:53.608 -08 000000079 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:53.670 -08 000000079 INF: Y Motor: Recv v 0\r
17-02-28 19:43:53.670 -08 000000079 INF: Y Motor: Moved to 62.9704 after 1309 ms
17-02-28 19:43:53.670 -08 000000079 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:53.732 -08 000000079 INF: Y Motor: Recv v 4097\r
17-02-28 19:43:53.732 -08 000000079 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:53.732 -08 000000079 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:53.794 -08 000000079 INF: Y Motor: Recv v 0\r
17-02-28 19:43:53.794 -08 000000079 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:53.794 -08 000000079 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:53.859 -08 000000079 INF: Y Motor: Recv v 134217728\r
17-02-28 19:43:53.859 -08 000000079 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x08000000), Bit27=Trajectory running or not settled.
17-02-28 19:43:53.859 -08 000000079 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:53.859 -08 000000079 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:53.921 -08 000000079 INF: Y Motor: Recv v 0\r
17-02-28 19:43:53.921 -08 000000079 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:53.921 -08 000000079 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:53.921 -08 000000079 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:53.983 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:43:53.983 -08 000000079 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:53.983 -08 000000079 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:54.045 -08 000000079 INF: Y Motor: Recv ok\r
17-02-28 19:43:54.045 -08 000000079 INF: ======================================
17-02-28 19:43:54.046 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:54.047 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:54.048 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:54.048 -08 000000042 INF: FPGA: Xmit TDICLINES\n
17-02-28 19:43:54.105 -08 000000027 INF: FPGA: Recv TDICLINES 1023
17-02-28 19:43:54.105 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:54.167 -08 000000070 INF: FPGA: Recv TDIYERD 6297043
17-02-28 19:43:54.167 -08 000000042 INF: FPGA: Xmit ZADCR\n
17-02-28 19:43:54.229 -08 000000093 INF: FPGA: Recv ZADCR 2425
17-02-28 19:43:54.229 -08 000000042 INF: At scan end Y pos = 62.970 and Z pos = -0.010. Y moved -1.363 mm
17-02-28 19:43:54.229 -08 000000042 INF: FPGA: Xmit TDIPULSES\n
17-02-28 19:43:54.291 -08 000000048 INF: FPGA: Recv TDIPULSES 3073
17-02-28 19:43:54.291 -08 000000042 INF: The FPGA sent 3072 triggers to the camera ; expected 3072
17-02-28 19:43:54.291 -08 000000042 INF: TDIScan finished after 4987.8168 ms
17-02-28 19:43:54.291 -08 000000042 INF: Image[0]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:54.291 -08 000000042 INF: Image[2]: Y should trigger at 64.334 mm, 2nd row was at 64.321 mm (error = -0.013 mm)
17-02-28 19:43:54.291 -08 000000042 INF: FPGA: Xmit SWOOF_RDSTAT\n
17-02-28 19:43:54.356 -08 000000009 INF: FPGA: Recv SWOOF_RDSTAT 0
17-02-28 19:43:54.356 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:54.357 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:54.358 -08 000000051 INF: ===================Set YMotor gains for fast moves===================
17-02-28 19:43:54.358 -08 000000088 INF: ===================Set Y Motor Motor Velocity===================
17-02-28 19:43:54.358 -08 000000070 INF: ===================Set Z Motor Motor Velocity===================
17-02-28 19:43:54.358 -08 000000088 INF: Y Motor: Set max velocity (25000000), unit is 0.1 counts/sec
17-02-28 19:43:54.358 -08 000000088 INF: Y Motor: Xmit s r0xcb 25000000\r
17-02-28 19:43:54.358 -08 000000051 INF: ======================================
17-02-28 19:43:54.359 -08 000000070 INF: ======================================
17-02-28 19:43:54.420 -08 000000088 INF: Y Motor: Recv ok\r
17-02-28 19:43:54.420 -08 000000088 INF: ======================================
17-02-28 19:43:54.421 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:54.422 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:54.423 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(A)===================
17-02-28 19:43:54.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:54.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 9 of 30 seconds left===================
17-02-28 19:43:54.453 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:54.453 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(G)===================
17-02-28 19:43:54.481 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:54.481 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(T)===================
17-02-28 19:43:54.505 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:54.506 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, HandleImage(C)===================
17-02-28 19:43:54.528 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:54.529 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:54.529 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:54.530 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, ETF: Extracting coords===================
17-02-28 19:43:54.538 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:54.538 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:54.538 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point, Extracting metrics===================
17-02-28 19:43:55.233 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Selecting focus point===================
17-02-28 19:43:55.256 -08 000000042 INF: ETF for image Index#0: Best Z position at bottom surface = -0.089638520621562Best Z position at top surface = -0.16053512129585Best Z position at top surface + compensator offset = -0.13783512129585 C:1,L:5,T
17-02-28 19:43:55.257 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 0 is -0.16053512129585
17-02-28 19:43:55.257 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 0 is 63.97934
17-02-28 19:43:55.257 -08 000000042 INF: ETF Weighted Average for Z at Peaks index 1 is -0.089638520621562
17-02-28 19:43:55.257 -08 000000042 INF: ETF Weighted Average for Y at Peaks index 1 is 63.63814
17-02-28 19:43:55.257 -08 000000042 INF: Z-height at LaneTopSurface is -0.16053512129585.
17-02-28 19:43:55.257 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:55.385 -08 000000050 INF: RunCopyService queue size at 2/28/2017 7:43:55 PM is 2
17-02-28 19:43:55.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:55.452 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 8 of 30 seconds left===================
17-02-28 19:43:55.527 -08 000000042 INF: Z Motor: Set Z velocity to 1.000 mm/s / 1288471 16.16 format
17-02-28 19:43:55.527 -08 000000042 INF: FPGA: Xmit ZSTEP 1288471\n
17-02-28 19:43:55.541 -08 000000094 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:55.541 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:55.542 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:55.543 -08 000000042 INF: Lane 5, LaneTopSurface Surface was not flagged for detilt operations after ETF. Moving to default tilt positions: m1=4.998974, m2=5.393944, m3=5.34035
17-02-28 19:43:55.543 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:55.543 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:55.544 -08 000000027 INF: ===================Move Tilt Motor 1===================
17-02-28 19:43:55.544 -08 000000074 INF: ===================Move Tilt Motor 2===================
17-02-28 19:43:55.544 -08 000000070 INF: ===================Move Tilt Motor 3===================
17-02-28 19:43:55.545 -08 000000027 INF: ======================================
17-02-28 19:43:55.545 -08 000000070 INF: Tilt Motor 3: Moving to 5.3404 mm, started at 5.3391 mm, delta = 0.0013 mm
17-02-28 19:43:55.545 -08 000000070 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:55.545 -08 000000074 INF: ======================================
17-02-28 19:43:55.603 -08 000000009 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:55.603 -08 000000070 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:55.603 -08 000000070 INF: Tilt Motor 3: Moving to 21025 encoder counts
17-02-28 19:43:55.603 -08 000000070 INF: FPGA: Xmit T3MOVETO 21025\n
17-02-28 19:43:55.727 -08 000000087 INF: FPGA: Recv T3MOVETO 0
17-02-28 19:43:55.727 -08 000000070 INF: Tilt Motor 3: To move from 5.339 to 5.340 (0.001 mm) should take 1 steps, but required 0 steps (0.000 mm). Slippage = -0.002 mm (-1.20%)
17-02-28 19:43:55.727 -08 000000070 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:55.789 -08 000000047 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:55.789 -08 000000070 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:55.789 -08 000000070 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:55.851 -08 000000060 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:55.851 -08 000000070 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:55.851 -08 000000070 INF: FPGA: Xmit T3RD\n
17-02-28 19:43:55.916 -08 000000039 INF: FPGA: Recv T3RD 21020
17-02-28 19:43:55.916 -08 000000070 INF: Tilt Motor 3: Encoder: at motor step 3503 + 2/6
17-02-28 19:43:55.916 -08 000000070 INF: Tilt Motor 3: After move to 5.3404, error = -0.0013, min/max error = -0.0017/0.0016, tolerance = 0.0107 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:55.916 -08 000000070 INF: Tilt Motor 3: Moved to 5.3391 after 371.4002 ms
17-02-28 19:43:55.916 -08 000000070 INF: ======================================
17-02-28 19:43:55.917 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:55.918 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1===================
17-02-28 19:43:55.919 -08 000000042 INF: ETF Best Z: -0.1378351 mm (36132 DAC)
17-02-28 19:43:55.924 -08 000000042 INF: Transformed XStagePosition from 83.01064 mm to 83.0106353759766 mm.
17-02-28 19:43:55.933 -08 000000042 INF: Transformed StartingYStagePosition from 40.4930030822754 mm to 40.4930030822754 mm.
17-02-28 19:43:55.933 -08 000000042 INF: Transformed StartingYStageITFPosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:55.933 -08 000000042 INF: Transformed TriggerYStagePosition from 40.2930030822754 mm to 40.2930030822754 mm.
17-02-28 19:43:55.934 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:55.934 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:55.937 -08 000000042 INF: AutoFocus Z params:startMotor=-0.23,startAquire=-0.23,stopMotor=-0.01,triggerDelta=0
17-02-28 19:43:55.937 -08 000000042 INF: Z Motor: Set Z velocity to 5.000 mm/s / 6442353 16.16 format
17-02-28 19:43:55.938 -08 000000042 INF: FPGA: Xmit ZSTEP 6442353\n
17-02-28 19:43:55.978 -08 000000093 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:55.978 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:55.978 -08 000000042 INF: Z Motor: Entering MoveAbsStepped
17-02-28 19:43:55.978 -08 000000042 INF: Z Motor: Moving to -0.2300 mm, started at -0.0100 mm
17-02-28 19:43:55.978 -08 000000042 INF: FPGA: Xmit ZTRG 0\n
17-02-28 19:43:56.040 -08 000000063 INF: FPGA: Recv ZTRG 
17-02-28 19:43:56.040 -08 000000042 INF: FPGA: Xmit ZYT 0 3\n
17-02-28 19:43:56.103 -08 000000020 INF: FPGA: Recv ZYT 
17-02-28 19:43:56.103 -08 000000042 INF: Z Motor: ZMV will trigger camera immediately and ramp is HW controlled
17-02-28 19:43:56.103 -08 000000042 INF: FPGA: Xmit ZMV 60292\n
17-02-28 19:43:56.166 -08 000000067 INF: FPGA: Recv @LOG Trigger Camera
17-02-28 19:43:56.166 -08 000000067 INF: FPGA: Recv ZMV 
17-02-28 19:43:56.166 -08 000000006 INF: FPGA: Trigger Camera
17-02-28 19:43:56.166 -08 000000042 INF: Z Motor: MoveAndTrigger 'ZMV' command took 62.7893 ms
17-02-28 19:43:56.166 -08 000000042 INF: FPGA: Xmit ZDACR\n
17-02-28 19:43:56.227 -08 000000084 INF: FPGA: Recv ZDACR 60292
17-02-28 19:43:56.227 -08 000000042 INF: Z Motor: MoveAndTrigger took 247.4844 ms w/comms
17-02-28 19:43:56.227 -08 000000042 INF: Z Motor: After move to -0.2300, error = 0.0000, min/max error = 0.0000/0.0000, tolerance = 0.0010 mm, Keep Motor On = False. Keep Brake Off = False
17-02-28 19:43:56.227 -08 000000042 INF: Z Motor: MoveAbsStepped took 247.6403 ms
17-02-28 19:43:56.227 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:56.228 -08 000000042 INF: Transformed XStagePosition from 83.01064 mm to 83.0106353759766 mm.
17-02-28 19:43:56.237 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:56.237 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:56.237 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:56.237 -08 000000042 INF: Z Motor: Set Z velocity to 0.312 mm/s / 401506 16.16 format
17-02-28 19:43:56.237 -08 000000042 INF: FPGA: Xmit ZSTEP 401506\n
17-02-28 19:43:56.289 -08 000000101 INF: FPGA: Recv ZSTEP 
17-02-28 19:43:56.289 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1===================
17-02-28 19:43:56.289 -08 000000042 INF: Transformed XStagePosition from 83.01064 mm to 83.0106353759766 mm.
17-02-28 19:43:56.298 -08 000000042 INF: Transformed StartingYStagePosition from 64.5335113525391 mm to 64.5335113525391 mm.
17-02-28 19:43:56.298 -08 000000042 INF: Transformed StartingYStageITFPosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:56.298 -08 000000042 INF: Transformed TriggerYStagePosition from 64.3335113525391 mm to 64.3335113525391 mm.
17-02-28 19:43:56.300 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:56.301 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Populating image tags===================
17-02-28 19:43:56.301 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:56.301 -08 000000042 INF: TDIScan start: HighRes1x1, velocity = 1.5 mm/sec, clearing lines = 66, image lines = 3072, channels = A, G, T, C, TDI Z = -230.0 um, section = F_1
17-02-28 19:43:56.301 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:56.302 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:56.303 -08 000000083 INF: ===================MoveEmissionFilters===================
17-02-28 19:43:56.303 -08 000000027 INF: ===================Move X,Y===================
17-02-28 19:43:56.303 -08 000000060 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:56.303 -08 000000076 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:56.303 -08 000000027 INF: ===================Move X,Y, Parallel===================
17-02-28 19:43:56.303 -08 000000047 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:56.304 -08 000000020 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:56.304 -08 000000060 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:56.304 -08 000000076 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:56.304 -08 000000047 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2', MoveEmissionFilterSet===================
17-02-28 19:43:56.304 -08 000000020 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1', MoveEmissionFilterSet===================
17-02-28 19:43:56.305 -08 000000065 INF: ===================Move X Motor without settling===================
17-02-28 19:43:56.305 -08 000000064 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:56.305 -08 000000065 INF: X Motor: Xmit PR VM\n
17-02-28 19:43:56.305 -08 000000064 INF: Y Motor: Moving to 64.5335 mm @25.000 mm/sec, started at 62.9704 mm
17-02-28 19:43:56.305 -08 000000064 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:56.305 -08 000000064 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:56.305 -08 000000104 INF: ===================Move Emission Filter 11(sim) to OutOfPath===================
17-02-28 19:43:56.305 -08 000000079 INF: ===================Move Emission Filter 12 to IntoPath===================
17-02-28 19:43:56.305 -08 000000084 INF: ===================Move Emission Filter 21(sim) to IntoPath===================
17-02-28 19:43:56.305 -08 000000086 INF: ===================Move Emission Filter 22(sim) to OutOfPath===================
17-02-28 19:43:56.305 -08 000000074 INF: ===================Move Emission Filter 32(sim) to IntoPath===================
17-02-28 19:43:56.305 -08 000000048 INF: ===================Move Emission Filter 41(sim) to IntoPath===================
17-02-28 19:43:56.305 -08 000000025 INF: ===================Move Emission Filter 42(sim) to OutOfPath===================
17-02-28 19:43:56.305 -08 000000058 INF: ===================Move Emission Filter 31(sim) to OutOfPath===================
17-02-28 19:43:56.306 -08 000000074 INF: ======================================
17-02-28 19:43:56.306 -08 000000058 INF: ======================================
17-02-28 19:43:56.306 -08 000000079 INF: Emission Filter 12: Remaining IntoPath
17-02-28 19:43:56.306 -08 000000079 INF: ======================================
17-02-28 19:43:56.307 -08 000000048 INF: ======================================
17-02-28 19:43:56.307 -08 000000047 INF: ===================Move EmissionFilterSet3(sim) ('T') to 'Bandpass2'===================
17-02-28 19:43:56.308 -08 000000104 INF: ======================================
17-02-28 19:43:56.308 -08 000000084 INF: ======================================
17-02-28 19:43:56.308 -08 000000086 INF: ======================================
17-02-28 19:43:56.309 -08 000000047 INF: ======================================
17-02-28 19:43:56.309 -08 000000025 INF: ======================================
17-02-28 19:43:56.310 -08 000000060 INF: ===================Move EmissionFilterSet1(sim) ('A') to 'Bandpass2'===================
17-02-28 19:43:56.310 -08 000000076 INF: ===================Move EmissionFilterSet2(sim) ('G') to 'Bandpass1'===================
17-02-28 19:43:56.310 -08 000000020 INF: ===================Move EmissionFilterSet4(sim) ('C') to 'Bandpass1'===================
17-02-28 19:43:56.311 -08 000000060 INF: ======================================
17-02-28 19:43:56.311 -08 000000076 INF: ======================================
17-02-28 19:43:56.311 -08 000000020 INF: ======================================
17-02-28 19:43:56.312 -08 000000083 INF: ======================================
17-02-28 19:43:56.353 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:56.353 -08 000000064 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:56.353 -08 000000064 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:56.353 -08 000000065 INF: X Motor: Recv PR VM\r\n6144\r\n>
17-02-28 19:43:56.353 -08 000000065 INF: X Motor: Xmit PR VI\n
17-02-28 19:43:56.418 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:56.418 -08 000000064 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:56.418 -08 000000065 INF: X Motor: Recv PR VI\r\n410\r\n>
17-02-28 19:43:56.418 -08 000000065 INF: X Motor: Before MoveAbsStepped, VM = 6144 (15 mm/sec), VI = 410 (1.000977 mm/sec), 'Velocity' property = 15 mm/sec
17-02-28 19:43:56.418 -08 000000065 INF: X Motor: Moving to 83.0106 mm @15.000 mm/sec, started at 80.2451 mm
17-02-28 19:43:56.418 -08 000000065 INF: X Motor: Xmit MA 9835\n
17-02-28 19:43:56.453 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:56.453 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 7 of 30 seconds left===================
17-02-28 19:43:56.480 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:43:56.480 -08 000000064 INF: Y Motor: Before move, after clearing latch: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:56.480 -08 000000065 INF: X Motor: Recv MA 9835\r\n>
17-02-28 19:43:56.480 -08 000000064 INF: Y Motor: Set target position to 5953351 encoder counts
17-02-28 19:43:56.480 -08 000000064 INF: Y Motor: Xmit s r0xca 5953351\r
17-02-28 19:43:56.480 -08 000000065 INF: X Motor: WaitUntilStopped 60184
17-02-28 19:43:56.542 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:56.542 -08 000000064 INF: Y Motor: Start the move command
17-02-28 19:43:56.542 -08 000000064 INF: Y Motor: Xmit t 1\r
17-02-28 19:43:56.604 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:56.604 -08 000000064 INF: Y Motor: WaitUntilStopped 60063
17-02-28 19:43:56.604 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:56.728 -08 000000064 INF: Y Motor: Unshifted Position: 5878091
17-02-28 19:43:56.778 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:56.905 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMoving
17-02-28 19:43:57.041 -08 000000064 INF: Y Motor: Unshifted Position: 5953353
17-02-28 19:43:57.041 -08 000000064 INF: Y Motor: Get amplifier status: UpdateMotorStatus
17-02-28 19:43:57.041 -08 000000064 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:57.103 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:43:57.103 -08 000000064 INF: Y Motor: Moved to 64.5335 after 498 ms
17-02-28 19:43:57.103 -08 000000064 INF: Y Motor: Xmit g r0xc9\r
17-02-28 19:43:57.165 -08 000000064 INF: Y Motor: Recv v 4096\r
17-02-28 19:43:57.165 -08 000000064 INF: Y Motor: Status After move finished OK:
17-02-28 19:43:57.165 -08 000000064 INF: Y Motor: Xmit g r0xa0\r
17-02-28 19:43:57.227 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:43:57.227 -08 000000064 INF: Y Motor: After move finished OK: The following amplifier status register (g r0xa0) bits are set (value = 0x00000000)
17-02-28 19:43:57.227 -08 000000064 INF: Y Motor: Xmit g r0xa1\r
17-02-28 19:43:57.227 -08 000000065 INF: X Motor: Xmit PR ER\n
17-02-28 19:43:57.289 -08 000000065 INF: X Motor: Recv PR ER\r\n0\r\n>
17-02-28 19:43:57.289 -08 000000065 INF: X Motor: Moved to 83.0137 after 808 ms
17-02-28 19:43:57.289 -08 000000064 INF: Y Motor: Recv v 402653184\r
17-02-28 19:43:57.289 -08 000000064 INF: Y Motor: After move finished OK: The following latched amplifier status register (g r0xa1) bits are set (value = 0x18000000), Bit27=Trajectory running or not settled., Bit28=Velocity window exceeded.
17-02-28 19:43:57.289 -08 000000064 INF: Y Motor: Get latched fault status: After move finished OK
17-02-28 19:43:57.289 -08 000000064 INF: Y Motor: Xmit g r0xa4\r
17-02-28 19:43:57.289 -08 000000065 INF: ======================================
17-02-28 19:43:57.354 -08 000000064 INF: Y Motor: Recv v 0\r
17-02-28 19:43:57.354 -08 000000064 INF: Y Motor: After move finished OK: The following latched fault status register (0xa4) bits are set (value = 0x00000000)
17-02-28 19:43:57.354 -08 000000064 INF: Y Motor: After move finished OK: Clear latched fault status
17-02-28 19:43:57.354 -08 000000064 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:57.416 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:57.416 -08 000000064 INF: Y Motor: Clear latched amplifier status: After move finished OK
17-02-28 19:43:57.416 -08 000000064 INF: Y Motor: Xmit s r0xa1 0xffffffff\r
17-02-28 19:43:57.453 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:57.453 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 6 of 30 seconds left===================
17-02-28 19:43:57.478 -08 000000064 INF: Y Motor: Recv ok\r
17-02-28 19:43:57.478 -08 000000064 INF: ======================================
17-02-28 19:43:57.479 -08 000000027 INF: ===================Move X,Y===================
17-02-28 19:43:57.480 -08 000000027 INF: ======================================
17-02-28 19:43:57.481 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Moving motors===================
17-02-28 19:43:57.482 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:57.482 -08 000000042 INF: Y Motor: Set max velocity (1500000), unit is 0.1 counts/sec
17-02-28 19:43:57.482 -08 000000042 INF: Y Motor: Xmit s r0xcb 1500000\r
17-02-28 19:43:57.540 -08 000000042 INF: Y Motor: Recv ok\r
17-02-28 19:43:57.540 -08 000000042 INF: FPGA: Xmit ZFREQCL 9200\n
17-02-28 19:43:57.600 -08 000000079 INF: FPGA: Recv ZFREQCL
17-02-28 19:43:57.600 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Reporting Motor Positions===================
17-02-28 19:43:57.600 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:57.600 -08 000000042 INF: FPGA: Xmit TDIYERD\n
17-02-28 19:43:57.662 -08 000000088 INF: FPGA: Recv TDIYERD 6453352
17-02-28 19:43:57.662 -08 000000042 INF: Before scan, Y encoder from FPGA = 6453352 counts (64.534 mm)
17-02-28 19:43:57.662 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:57.663 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:57.664 -08 000000076 INF: ===================TDI Scan Setup===================
17-02-28 19:43:57.664 -08 000000101 INF: ===================Set YMotor gains for scans===================
17-02-28 19:43:57.664 -08 000000101 INF: ======================================
17-02-28 19:43:57.664 -08 000000076 INF: ===================TDI Scan Setup, FPGA Set Image Mode===================
17-02-28 19:43:57.665 -08 000000076 INF: ===================TDI Scan Setup===================
17-02-28 19:43:57.666 -08 000000076 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:57.667 -08 000000076 INF: ===================TDI Scan Setup, Arm FPGA, Set Y starting position for the TDIYARM2 command===================
17-02-28 19:43:57.667 -08 000000076 INF: FPGA: Xmit TDIYPOS 6433351\n
17-02-28 19:43:57.724 -08 000000025 INF: FPGA: Recv TDIYPOS
17-02-28 19:43:57.724 -08 000000076 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:57.726 -08 000000076 INF: ===================TDI Scan Setup, Arm FPGA, FPGA Arm TDI===================
17-02-28 19:43:57.726 -08 000000076 INF: FPGA: Xmit TDIYARM2 3072 1 1\n
17-02-28 19:43:57.789 -08 000000063 INF: FPGA: Recv TDIYARM2
17-02-28 19:43:57.789 -08 000000076 INF: ===================TDI Scan Setup, Arm FPGA===================
17-02-28 19:43:57.790 -08 000000076 INF: ===================TDI Scan Setup===================
17-02-28 19:43:57.792 -08 000000076 INF: ===================TDI Scan Setup, Set FPGA Camera Trigger===================
17-02-28 19:43:57.792 -08 000000076 INF: ===================TDI Scan Setup===================
17-02-28 19:43:57.793 -08 000000076 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:57.794 -08 000000076 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:57.795 -08 000000076 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:58.163 -08 000000076 INF: Camera #0 AttachBuffer (imageDataPtr = 74572887352 imgPtr = 74572887352 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:58.163 -08 000000076 INF: CameraArmTDI CameraBaseSensorPath: 0 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:58.164 -08 000000076 INF: CameraArmTDI CameraBaseSensorPath: 0... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:58.179 -08 000000076 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:58.181 -08 000000076 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial, Camera TDI===================
17-02-28 19:43:58.453 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation===================
17-02-28 19:43:58.453 -08 000000018 INF: ===================Flow Cell A (HHHWNBBXX), Cycle #2, Chemistry CompleteCycle, Incorporation, Delay 5 of 30 seconds left===================
17-02-28 19:43:58.549 -08 000000076 INF: Camera #2 AttachBuffer (imageDataPtr = 75511411392 imgPtr = 74774213944 , attachBufferNumFrames = 12 , frameSize = 1638400,
17-02-28 19:43:58.549 -08 000000076 INF: CameraArmTDI CameraBaseSensorPath: 2 (cameraMode TDI_1x1, ImageLines 3072
17-02-28 19:43:58.550 -08 000000076 INF: CameraArmTDI CameraBaseSensorPath: 2... SensorModeLineBundleHeight = 512, SubArrayMode = Off, HorPos = 0, VertPos = 0, HorSize = 6400, VertSize = 64)
17-02-28 19:43:58.565 -08 000000076 INF: ===================TDI Scan Setup, Camera Arm TDI, Serial===================
17-02-28 19:43:58.566 -08 000000076 INF: ===================TDI Scan Setup, Camera Arm TDI===================
17-02-28 19:43:58.568 -08 000000076 INF: ===================TDI Scan Setup===================
17-02-28 19:43:58.569 -08 000000076 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:58.570 -08 000000076 INF: ===================TDI Scan Setup, Serial, Delay Next Z Move Until Y===================
17-02-28 19:43:58.570 -08 000000076 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:58.572 -08 000000076 INF: ===================TDI Scan Setup, Serial, Arm Z Motor===================
17-02-28 19:43:58.572 -08 000000076 INF: Z Motor: Entering ArmAbsStepped
17-02-28 19:43:58.572 -08 000000076 INF: Z Motor: Arming to move to -0.0100 mm
17-02-28 19:43:58.572 -08 000000076 INF: FPGA: Xmit ZYT 0 2\n
17-02-28 19:43:58.600 -08 000000101 INF: FPGA: Recv ZYT 
17-02-28 19:43:58.600 -08 000000076 INF: Z Motor: ZARM will arm Z motor and start the ramp when first camera image trigger pulse is sent (past camera clearing lines)
17-02-28 19:43:58.600 -08 000000076 INF: FPGA: Xmit ZARM 2621\n
17-02-28 19:43:58.662 -08 000000020 INF: FPGA: Recv ZARM
17-02-28 19:43:58.662 -08 000000076 INF: Z Motor: ArmAndSetTriggerMode 'ZARM' command took 61.9583 ms
17-02-28 19:43:58.662 -08 000000076 INF: Z Motor: ArmAbsStepped took 90.0093 ms
17-02-28 19:43:58.662 -08 000000076 INF: ===================TDI Scan Setup, Serial===================
17-02-28 19:43:58.663 -08 000000076 INF: ===================TDI Scan Setup===================
17-02-28 19:43:58.664 -08 000000076 INF: ======================================
17-02-28 19:43:58.665 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Arm Scan and Set YMotor Gain===================
17-02-28 19:43:58.666 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C===================
17-02-28 19:43:58.666 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:58.667 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:58.667 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:58.668 -08 000000063 INF: ===================Move Excitation Filter 2 (A) to 'OD0.2'===================
17-02-28 19:43:58.668 -08 000000094 INF: ===================Move Excitation Filter 1 (G) to 'OD0.2'===================
17-02-28 19:43:58.668 -08 000000063 INF: Excitation Filter 2: Moving 'A' to index 5 (OD0.2)
17-02-28 19:43:58.668 -08 000000063 INF: Excitation Filter 2: Moving to 225.0000 degrees
17-02-28 19:43:58.668 -08 000000063 INF: Excitation Filter 2: Moving -107 steps
17-02-28 19:43:58.668 -08 000000094 INF: Excitation Filter 1: Moving 'G' to index 5 (OD0.2)
17-02-28 19:43:58.668 -08 000000094 INF: Excitation Filter 1: Moving to 225.0000 degrees
17-02-28 19:43:58.669 -08 000000094 INF: Excitation Filter 1: Moving -107 steps
17-02-28 19:43:58.669 -08 000000063 INF: FPGA: Xmit EX2MV -107\n
17-02-28 19:43:58.671 -08 000000094 INF: FPGA: Xmit EX1MV -107\n
17-02-28 19:43:59.100 -08 000000027 INF: FPGA: Recv EX2MV
17-02-28 19:43:59.100 -08 000000027 INF: FPGA: Recv EX1MV
17-02-28 19:43:59.100 -08 000000063 INF: Excitation Filter 2: Moved -107 steps in 431.3931 ms
17-02-28 19:43:59.100 -08 000000094 INF: Excitation Filter 1: Moved -107 steps in 431.3144 ms
17-02-28 19:43:59.100 -08 000000063 INF: Excitation Filter 2: Moved to 224.7190 degrees (target was 225.0000) in 431.4877 ms
17-02-28 19:43:59.100 -08 000000063 INF: Excitation Filter 2: Moved 'A' to index 5 (OD0.2) in 431.5912 ms
17-02-28 19:43:59.100 -08 000000094 INF: Excitation Filter 1: Moved to 224.7190 degrees (target was 225.0000) in 431.4456 ms
17-02-28 19:43:59.100 -08 000000094 INF: Excitation Filter 1: Moved 'G' to index 5 (OD0.2) in 431.6167 ms
17-02-28 19:43:59.100 -08 000000063 INF: ======================================
17-02-28 19:43:59.100 -08 000000094 INF: ======================================
17-02-28 19:43:59.101 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:59.103 -08 000000042 INF: ===================Flow Cell B (HHGTLBBXX), Cycle #1, Imaging, Top Surface, Lane 1, Focus Point 1, Channels A, G, T, C, Scanning===================
17-02-28 19:43:59.103 -08 000000086 INF: ===================Serial===================
17-02-28 19:43:59.104 -08 000000079 INF: ===================Camera TDI===================
17-02-28 19:43:59.104 -08 000000010 INF: ===================Wait for frames then close excitation filters===================
17-02-28 19:43:59.104 -08 000000035 INF: ===================Move Y Motor without settling===================
17-02-28 19:43:59.104 -08 000000035 INF: Y Motor: Moving to 62.9704 mm @1.500 mm/sec, started at 64.5335 mm
17-02-28 19:43:59.104 -08 000000035 INF: Y Motor: Before move, after clearing latch: Clear latched fault status
17-02-28 19:43:59.104 -08 000000035 INF: Y Motor: Xmit s r0xa4 0xffff\r
17-02-28 19:43:59.104 -08 000000086 INF: ===================Serial, FPGA Z Wait===================
17-02-28 19:43:59.104 -08 000000079 INF: ===================Camera TDI, Parallel===================
17-02-28 19:43:59.104 -08 000000086 INF: FPGA: Xmit ZWAIT\n
17-02-28 19:43:59.104 -08 000000010 INF: ===================Wait for frames then close excitation filters, FPGA Wait TDI===================
17-02-28 19:43:59.105 -08 000000076 INF: ===================Camera TDI===================
17-02-28 19:43:59.105 -08 000000084 INF: ===================Camera TDI===================
17-02-28 19:43:59.106 -08 000000076 INF: Camera #0 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:59.106 -08 000000076 INF: Camera #0 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:59.107 -08 000000084 INF: Camera #2 called GetTransferInfo, newestFrameIndex = -1, frameCount = 0.
17-02-28 19:43:59.107 -08 000000084 INF: Camera #2 called GetCurrentFrameReceived, frameHasDataTotalFramesReceived = 0
17-02-28 19:43:59.107 -08 000000010 INF: FPGA: Xmit TDIYWAIT\n
17-02-28 19:43:59.161 -08 000000035 INF: Y Motor: Recv ok\r
17-02-28 19:43:59.161 -08 000000035 INF: Y Motor: Clear latched amplifier status: Before move, after clearing latch
17-02-28 19:43:59.161 -08 000000035