; C:\Illumina\MiSeq FGx Control Software\MiSeqSoftware.Hardware.cfg ; #include (InstrumentType).cfg C:\Illumina\MiSeq FGx Control Software\Configs\Instruments\Shock.cfg ; ShockProto.cfg ; MiSeq.cfg ; MiSeqPilot.cfg ; ..\MiSeqCommon.cfg ; FPGA.cfg ; YMotor_FPGAStepper.cfg ; ZMotor_PI_300um.cfg ; ExcitationLEDs.cfg ; SipperMotor.cfg ; Fluidics.cfg ; Sensors.cfg ; StatusLights.cfg ; BurnInTest.cfg ; ..\SonyCamera.cfg ; ..\Compensator.cfg ; C:\MiSeqOverride.cfg [_fileinfo] overrideversion = 1.0.11_Shock 7/30/2013 5:15 PM ; MiSeqOverride.cfg [_notes] instrumenttypedescription = Shock ; Shock.cfg [burnintest.bubble] numberofcycles = 1 ; BurnInTest.cfg percenterrorsthreshold = 20 ; BurnInTest.cfg triespersolution = 3 ; BurnInTest.cfg [burnintest.chiller] chillerlowerbounddegreesc = 3.5 ; BurnInTest.cfg chillerramprateminutes = 180 ; BurnInTest.cfg chillersetpointdegreesc = 4 ; BurnInTest.cfg chillerupperbounddegreesc = 6 ; BurnInTest.cfg [burnintest.compensator] gonumberofcyclesinsteadofruntime = false ; BurnInTest.cfg numberofcycles = 10 ; BurnInTest.cfg timemsbetweenmoves = 1000 ; BurnInTest.cfg [burnintest.fctec] hightempholdtimesecs = 120 ; BurnInTest.cfg hightempramptimeallowedsecs = 40 ; BurnInTest.cfg hightempsetpointdegreesc = 70 ; BurnInTest.cfg lowtempholdtimesecs = 60 ; BurnInTest.cfg lowtempramptimeallowedsecs = 30 ; BurnInTest.cfg lowtempsetpointdegreesc = 22 ; BurnInTest.cfg tolerancedegreesc = 0.5 ; BurnInTest.cfg [burnintest.fluidicscommon] afterprimingrefillwithpr2 = true ; BurnInTest.cfg bubbletestquarter = 3 ; BurnInTest.cfg pumpandvalvetestquarter = 2 ; BurnInTest.cfg sippertestquarter = 1 ; BurnInTest.cfg volumetestquarter = 4 ; BurnInTest.cfg [burnintest.led] ledofftimems = 2000 ; BurnInTest.cfg ledontimems = 1000 ; BurnInTest.cfg photodiodepercentchangeallowed = 10 ; BurnInTest.cfg [burnintest.led.green] numvalues = 4 ; BurnInTest.cfg testcurrentma1 = 2000 ; BurnInTest.cfg testcurrentma2 = 4000 ; BurnInTest.cfg testcurrentma3 = 6000 ; BurnInTest.cfg testcurrentma4 = 7000 ; BurnInTest.cfg [burnintest.led.red] numvalues = 4 ; BurnInTest.cfg testcurrentma1 = 375 ; BurnInTest.cfg testcurrentma2 = 750 ; BurnInTest.cfg testcurrentma3 = 1125 ; BurnInTest.cfg testcurrentma4 = 1500 ; BurnInTest.cfg [burnintest.lightbar] displaydelayms = 1000 ; BurnInTest.cfg [burnintest.mirror] ; BurnInTest.cfg [burnintest.pumpandvalve] cycleapumpstowaste = false ; BurnInTest.cfg cyclearepeatduringobcg = 30 ; BurnInTest.cfg cyclearepeatduringsbs = 302 ; BurnInTest.cfg cyclebrepeatduringobcg = 15 ; BurnInTest.cfg cyclebrepeatduringsbs = 151 ; BurnInTest.cfg enablecyclea = true ; BurnInTest.cfg enablecycleb = false ; BurnInTest.cfg ignoretimelimit = false ; BurnInTest.cfg primeaspiraterateulperminute = 2000 ; BurnInTest.cfg primedispenserateulperminute = 2500 ; BurnInTest.cfg primevolumeul = 1500 ; BurnInTest.cfg testaspiraterateulperminute = 2000 ; BurnInTest.cfg testaspiratevolumeul = 50 ; BurnInTest.cfg testaspiratevolumeulcycleb = 50 ; BurnInTest.cfg testdelaymsafteraspirate = 500 ; BurnInTest.cfg testdelaymsafterdispense = 500 ; BurnInTest.cfg testdelaymsbetweenadjacentvalvemoves = 500 ; BurnInTest.cfg testdispenserateulperminute = 2500 ; BurnInTest.cfg testnumberofruncycles = 12 ; BurnInTest.cfg valvepositionsperpumptest = 1 ; BurnInTest.cfg [burnintest.rfid] maxallowedblockreaderrorratepercent = 1 ; BurnInTest.cfg readtagrepeats = 25 ; BurnInTest.cfg retriesperblock = 5 ; BurnInTest.cfg stopiferror = false ; BurnInTest.cfg [burnintest.sipper] downwaittimems = 40000 ; BurnInTest.cfg upwaittimems = 40000 ; BurnInTest.cfg [burnintest.ste.settings] testtimeminutes = 1 ; BurnInTest.cfg usestesettings = false ; BurnInTest.cfg [burnintest.volume] numberofcycles = 1 ; BurnInTest.cfg percenterrorsthreshold = 10 ; BurnInTest.cfg [burnintest.ystage] cyclesperhomingoperation = 300 ; BurnInTest.cfg percenterrorsthreshold = 10 ; BurnInTest.cfg [burnintest.zstage] cyclesperhomingoperation = 300 ; BurnInTest.cfg percenterrorsthreshold = 1.33 ; BurnInTest.cfg testpositionmm1 = -0.145 ; BurnInTest.cfg testpositionmm2 = -0.155 ; BurnInTest.cfg [calibration] flowcell1xoffset = 0 ; MiSeqCommon.cfg flowcell1yoffset = 0 ; MiSeqCommon.cfg flowcell2xoffset = 0 ; MiSeqCommon.cfg flowcell2yoffset = 0 ; MiSeqCommon.cfg [cavrolanepump] bypassvalve = BypassValve ; Fluidics.cfg reagentvalve = RheodyneSelectorValve ; Fluidics.cfg [chillerdooropensensor] ; Sensors.cfg [chillertemperaturecontroller] chillerinnertecblock = ChillerInnerTECBlock ; Fluidics.cfg [cloud] performcloudtest = true ; MiSeqCommon.cfg [exception illumina.instrument.bolt.logic.incompatiblefirmwareversion] fatal = true ; MiSeqCommon.cfg retryable = false ; MiSeqCommon.cfg [exception illumina.instrument.bolt.logic.movestoppedbecausedoorisopenexception] fatal = false ; MiSeqCommon.cfg retryable = true ; MiSeqCommon.cfg [exception illumina.instrument.bolt.logic.serialportreceiverexception] fatal = true ; MiSeqCommon.cfg retryable = false ; MiSeqCommon.cfg [excitationled] allowbothledsonatsametime = false ; ExcitationLEDs.cfg dacoffset = 0 ; ExcitationLEDs.cfg measurepower = false ; ExcitationLEDs.cfg [flowcellcartridgerfidsensor] ; Sensors.cfg [flowcellclampclosedsensor] ; Sensors.cfg [flowcellfluidics] cosmeticname = FlowCellFluidics ; Fluidics.cfg flowcelltemperaturecontroller = FlowCellTemperatureController ; Fluidics.cfg flowsensor = FlowSensor ; Fluidics.cfg lanepump = CavroLanePump ; Fluidics.cfg [flowsensor] ; Fluidics.cfg [fluidics] chillertemperaturecontroller = ChillerTemperatureController ; Fluidics.cfg flowcellfluidics = FlowCellFluidics ; Fluidics.cfg [focus params] analyzeimages = true ; MiSeqCommon.cfg channeltouse = Focus T ; MiSeqCommon.cfg coarsefocuscenterz = -0.173747 ; MiSeqOverride.cfg coarsefocusnumsteps = 41 ; MiSeqCommon.cfg coarsefocusstepsize = 0.002 ; MiSeqCommon.cfg darksamplecontrastthreshold = 20 ; MiSeqCommon.cfg focusmirrorzoffset = -0.006 ; MiSeqOverride.cfg imagebottomsurfacefirst = false ; MiSeqCommon.cfg lowsnrcontrastthreshold = 40 ; MiSeqCommon.cfg lowsnrexposuretimeboostfactor = 1.5 ; MiSeqCommon.cfg maxautofocusexposuretimems = 1500 ; MiSeqCommon.cfg minimagespasssnrthresh = 0 ; MiSeqCommon.cfg scanbottomsurfaceonly = false ; MiSeqCommon.cfg skipautofocusmaxzcorrection = 0.0005 ; MiSeqOverride.cfg skipautofocusnoskipcycles = 5 ; MiSeqOverride.cfg skipautofocusntiles = 4 ; MiSeqOverride.cfg throughfocuscenterz = -0.173747 ; MiSeqOverride.cfg throughfocusmetric = Brenner ; MiSeqCommon.cfg throughfocusnumsteps = 41 ; MiSeqCommon.cfg throughfocusstepsize = 0.0005 ; MiSeqCommon.cfg tiltuntiltfocuscenterz = -0.173747 ; MiSeqOverride.cfg tiltuntiltfocusnumsteps = 41 ; MiSeqCommon.cfg tiltuntiltfocusstepsize = 0.0005 ; MiSeqCommon.cfg usepiecewiselinearfocusmodel = true ; MiSeqCommon.cfg usepredictiveoptimization = true ; MiSeqCommon.cfg zoffsettofocusled = -0.000809 ; MiSeqOverride.cfg [fpga features v3] array_height_sensor = 0.0 ; FPGA.cfg camera_selection = 0.5 ; FPGA.cfg deinterlace = 0.0 ; FPGA.cfg door_s_cmds = 0.24 ; FPGA.cfg doorsenrd = 0.32 ; FPGA.cfg doorsstate = 0.29 ; FPGA.cfg dynamic_focus = 0.0 ; FPGA.cfg ejen = 0.0 ; FPGA.cfg filterslider_separate_speeds = 0.0 ; FPGA.cfg free_run = 0.0 ; FPGA.cfg hm2 = 0.0 ; FPGA.cfg hw_zramp_zvelctrl_and_more = 0.1 ; FPGA.cfg index_counter = 0.0 ; FPGA.cfg laser_pwr = 0.0 ; FPGA.cfg laserpb = 0.27 ; FPGA.cfg laserset = 0.0 ; FPGA.cfg led_cmds = 0.0 ; FPGA.cfg ledbar_ms_timing = 0.26 ; FPGA.cfg ledbarswap = 0.26 ; FPGA.cfg ledharm = 0.26 ; FPGA.cfg ledmodepb = 0.18 ; FPGA.cfg ledmodepwr = 0.33 ; FPGA.cfg lsen = 0.0 ; FPGA.cfg miscrvc = 0.0 ; FPGA.cfg msgsen = 0.29 ; FPGA.cfg pwrben = 0.33 ; FPGA.cfg short_cmds = 0.0 ; FPGA.cfg sw_bruno = 0.0 ; FPGA.cfg sw_ylck = 0.15 ; FPGA.cfg swbeadchip = 0.25 ; FPGA.cfg swbeadcompat = 0.37 ; FPGA.cfg swceiling = 0.33 ; FPGA.cfg swcvdbg = 0.0 ; FPGA.cfg swdbugpxlx2 = 0.23 ; FPGA.cfg swdith_igain = 0.33 ; FPGA.cfg swdith_ihist = 0.33 ; FPGA.cfg swdith_size = 0.33 ; FPGA.cfg swftlsr = 0.16 ; FPGA.cfg swlsrshut = 0.15 ; FPGA.cfg swsig_tower = 0.0 ; FPGA.cfg swtgimage = 0.37 ; FPGA.cfg swtime = 0.19 ; FPGA.cfg swvix = 0.0 ; FPGA.cfg swyz_pos = 0.0 ; FPGA.cfg swzlag = 0.15 ; FPGA.cfg t1moveto = 0.16x ; FPGA.cfg tdibb = 0.16 ; FPGA.cfg tdiclines = 0.16x ; FPGA.cfg tdimask = 0.13 ; FPGA.cfg tdipulses = 0.16z15 ; FPGA.cfg tdiyarm3 = 0.16z ; FPGA.cfg tdiyarm4 = 0.36 ; FPGA.cfg tdiystart = 0.36 ; FPGA.cfg tld = 0.16z ; FPGA.cfg zarm = 0.0 ; FPGA.cfg zmvmathfix = 0.27 ; FPGA.cfg zspec = 0.16z ; FPGA.cfg [fpga features v4] array_height_sensor = 0.0 ; FPGA.cfg deinterlace = 0.0 ; FPGA.cfg dynamic_focus = 0.0 ; FPGA.cfg ejen = 0.0 ; FPGA.cfg filterslider_separate_speeds = 0.0 ; FPGA.cfg free_run = 0.0 ; FPGA.cfg hm2 = 0.0 ; FPGA.cfg hw_zramp_zvelctrl_and_more = 0.1 ; FPGA.cfg index_counter = 0.0 ; FPGA.cfg laser_pwr = 0.0 ; FPGA.cfg laserset = 0.0 ; FPGA.cfg led_cmds = 0.0 ; FPGA.cfg lsen = 0.0 ; FPGA.cfg short_cmds = 0.0 ; FPGA.cfg sw_bruno = 0.0 ; FPGA.cfg swceiling = 0.18 ; FPGA.cfg swcvdbg = 0.0 ; FPGA.cfg swdith_igain = 0.19 ; FPGA.cfg swdith_ihist = 0.19 ; FPGA.cfg swdith_size = 0.15 ; FPGA.cfg swgrp_size = 0.15 ; FPGA.cfg swsig_tower = 0.0 ; FPGA.cfg swtime = 99.99 ; FPGA.cfg swvix = 0.0 ; FPGA.cfg swyz_pos = 0.0 ; FPGA.cfg swzlag = 0.4 ; FPGA.cfg t1moveto = 0.4 ; FPGA.cfg tdimask = 0.4 ; FPGA.cfg zarm = 0.20 ; FPGA.cfg [fpga features v6] camdblsnap_zdelay = 1.0 ; FPGA.cfg camdly = 1.0 ; FPGA.cfg dummy = 0.0 ; FPGA.cfg emdly = 0.52 ; FPGA.cfg flashwr = 0.45 ; FPGA.cfg flow1arm_with_t1_response = 0.67 ; FPGA.cfg flow1dly = 1.0 ; FPGA.cfg focmrrdly = 0.52 ; FPGA.cfg focmrrfoc_focmrrimg = 0.14 ; FPGA.cfg minimum_required_version = 1.13 ; FPGA.cfg prototype_instrument = 0.0 ; FPGA.cfg thermal_control_protocol_v2 = 0.49 ; FPGA.cfg yhcur = 0.73 ; FPGA.cfg yhome_enc = 0.12 ; FPGA.cfg ymvto_returns_steps = 0.67 ; FPGA.cfg yprof_0_1 = 1.2 ; FPGA.cfg yvelus = 0.73 ; FPGA.cfg yvprofrd = 0.80 ; FPGA.cfg [fpga features v8] ~lightbar = 0.15 ; FPGA.cfg camdblsnap_zdelay = 0.6 ; FPGA.cfg camdly = 0.6 ; FPGA.cfg dummy = 0.0 ; FPGA.cfg emdly = 0.0 ; FPGA.cfg emin_emout = 0.14 ; FPGA.cfg flashwr = 0.0 ; FPGA.cfg flow1arm_with_t1_response = 0.7 ; FPGA.cfg flow1dly = 0.6 ; FPGA.cfg focmrrdly = 0.0 ; FPGA.cfg focmrrfoc_focmrrimg = 0.0 ; FPGA.cfg lightbar = 0.7 ; FPGA.cfg minimum_required_version = 0.18 ; FPGA.cfg pilot_instrument = 0.0 ; FPGA.cfg thermal_control_protocol_v2 = 0.0 ; FPGA.cfg thermal_control_protocol_v3 = 0.14 ; FPGA.cfg yhcur = 0.2 ; FPGA.cfg yhome_enc = 0.0 ; FPGA.cfg ymvto_returns_steps = 0.0 ; FPGA.cfg yprof_0_1 = 0.7 ; FPGA.cfg yvelus = 0.2 ; FPGA.cfg yvprofrd = 0.6 ; FPGA.cfg zmv_zstep_zclk = 0.0 ; FPGA.cfg [fpga features v9] buben2 = 5.12 ; FPGA.cfg camdblsnap_zdelay = 0.0 ; FPGA.cfg camdly = 0.0 ; FPGA.cfg diffcompcur = 5.8 ; FPGA.cfg dummy = 0.0 ; FPGA.cfg emdly = 0.1 ; FPGA.cfg emin_emout = 3.0 ; FPGA.cfg flashwr = 0.0 ; FPGA.cfg flow1arm_with_t1_response = 0.0 ; FPGA.cfg flow1dly = 0.0 ; FPGA.cfg focmrrdly = 0.0 ; FPGA.cfg focmrrfoc_focmrrimg = 0.0 ; FPGA.cfg lightbar = 0.3 ; FPGA.cfg minimum_required_version = 1.6 ; FPGA.cfg otled = 1.4 ; FPGA.cfg production_instrument = 0.0 ; FPGA.cfg sipcur = 0.0 ; FPGA.cfg sipvel = 0.0 ; FPGA.cfg supports_96c_and_tec2tcirc = 2.5 ; FPGA.cfg swcampwrdn = 1.0 ; FPGA.cfg swfx2reset = 1.0 ; FPGA.cfg thermal_control_protocol_v2 = 0.0 ; FPGA.cfg thermal_control_protocol_v3 = 1.7 ; FPGA.cfg yhcur = 0.0 ; FPGA.cfg yhome_enc = 0.0 ; FPGA.cfg ymvto_returns_steps = 0.0 ; FPGA.cfg yprof_0_1 = 0.0 ; FPGA.cfg ytablemove = 0.6 ; FPGA.cfg yvelus = 0.0 ; FPGA.cfg yvprofrd = 0.0 ; FPGA.cfg zfltacquire = 2.2 ; FPGA.cfg zmv_zstep_zclk = 0.0 ; FPGA.cfg [fpga initialization] command1 = SIPCUR 0 ; FPGA.cfg command2 = SIPVEL 0 ; FPGA.cfg [instrument] balance = MettlerToledo ; Fluidics.cfg camera = SonyCamera ; SonyCamera.cfg compensator = Compensator ; Compensator.cfg excitationled = ExcitationLED ; ExcitationLEDs.cfg fluidics = Fluidics ; Fluidics.cfg focusmirror = FocusMirror ; MiSeqCommon.cfg fpga = FPGA ; FPGA.cfg sensors = Sensors ; Sensors.cfg sippermotor = SipperMotor ; SipperMotor.cfg statuslights = StatusLights ; StatusLights.cfg ymotor = YMotor_FPGAStepper ; YMotor_FPGAStepper.cfg zmotor = ZMotor_PI_300um ; ZMotor_PI_300um.cfg [instrument.compensator] currentpercentin = 80 ; Compensator.cfg currentpercentout = 80 ; Compensator.cfg delaycurrentpercentin = 40 ; Compensator.cfg delaycurrentpercentout = 70 ; Compensator.cfg delayms = 500 ; Compensator.cfg ignoresensorerrors = false ; Compensator.cfg moveindelayms = 20 ; Compensator.cfg moveoutdelayms = 20 ; Compensator.cfg setcurrentcommand = EMCUR ; Compensator.cfg setdelaycommand = EMDLY ; Compensator.cfg stopcurrentpercentin = 60 ; Compensator.cfg stopcurrentpercentout = 75 ; Compensator.cfg zoffsetmm = 0.035 ; Compensator.cfg [instrument.compensator.retry] currentpercentin = 80 ; Compensator.cfg currentpercentout = 80 ; Compensator.cfg delaycurrentpercentin = 40 ; Compensator.cfg delaycurrentpercentout = 75 ; Compensator.cfg delayms = 1000 ; Compensator.cfg moveindelayms = 40 ; Compensator.cfg moveoutdelayms = 40 ; Compensator.cfg numretries = 3 ; Compensator.cfg stopcurrentpercentin = 60 ; Compensator.cfg stopcurrentpercentout = 75 ; Compensator.cfg [instrument.excitationled1] calibrationdrivecurrentma1 = 250 ; MiSeqOverride.cfg calibrationdrivecurrentma2 = 500 ; MiSeqOverride.cfg calibrationdrivecurrentma3 = 750 ; MiSeqOverride.cfg calibrationdrivecurrentma4 = 1000 ; MiSeqOverride.cfg calibrationdrivecurrentma5 = 1250 ; MiSeqOverride.cfg calibrationdrivecurrentma6 = 1500 ; MiSeqOverride.cfg calibrationphotodiodeadc1 = 2995 ; MiSeqOverride.cfg calibrationphotodiodeadc2 = 5990 ; MiSeqOverride.cfg calibrationphotodiodeadc3 = 8987 ; MiSeqOverride.cfg calibrationphotodiodeadc4 = 11983 ; MiSeqOverride.cfg calibrationphotodiodeadc5 = 14978 ; MiSeqOverride.cfg calibrationphotodiodeadc6 = 17974 ; MiSeqOverride.cfg calibrationpowermetermw1 = 28 ; MiSeqOverride.cfg calibrationpowermetermw2 = 56 ; MiSeqOverride.cfg calibrationpowermetermw3 = 87 ; MiSeqOverride.cfg calibrationpowermetermw4 = 112 ; MiSeqOverride.cfg calibrationpowermetermw5 = 137 ; MiSeqOverride.cfg calibrationpowermetermw6 = 162 ; MiSeqOverride.cfg color = Red ; ExcitationLEDs.cfg cosmeticname = RedLED ; ExcitationLEDs.cfg currentmaperdacunit = 2.2393 ; MiSeq.cfg enablepolling = false ; ExcitationLEDs.cfg enablepowermode = true ; MiSeq.cfg ledcontinuouscurrentma = 1500 ; MiSeq.cfg ledcontinuouspowermw = 160 ; MiSeq.cfg ledsnapcurrentma = 1500 ; MiSeq.cfg ledsnappowermw = 205 ; MiSeq.cfg maxledcontinuouscurrentma = 1500 ; MiSeq.cfg maxledcontinuouspowermw = 160 ; MiSeq.cfg maxledsnapcurrentma = 2050 ; MiSeq.cfg maxledsnappowermw = 205 ; MiSeq.cfg minledcontinuouspowermw = 0 ; MiSeq.cfg minledcurrentma = 0 ; ExcitationLEDs.cfg minledsnappowermw = 0 ; MiSeq.cfg numcalibrationpoints = 6 ; MiSeqOverride.cfg overtemperaturelimitadc = 0 ; ExcitationLEDs.cfg pollinglogintervalms = 10000 ; ExcitationLEDs.cfg powermwfortile1 = 205 ; MiSeq.cfg powermwfortile2 = 205 ; MiSeq.cfg powermwfortile3 = 205 ; MiSeq.cfg powermwfortile4 = 205 ; MiSeq.cfg powermwfortile5 = 205 ; MiSeq.cfg powermwfortile6 = 205 ; MiSeq.cfg powermwfortile7 = 205 ; MiSeq.cfg powermwfortile8 = 205 ; MiSeq.cfg powermwfortile9 = 205 ; MiSeq.cfg powermwfortile10 = 205 ; MiSeq.cfg powermwfortile11 = 205 ; MiSeq.cfg powermwfortile12 = 205 ; MiSeq.cfg powermwfortile13 = 205 ; MiSeq.cfg powermwfortile14 = 205 ; MiSeq.cfg powerpertilenumtiles = 14 ; MiSeq.cfg usepowerpertilemode = false ; MiSeq.cfg wavelength = 660 ; ExcitationLEDs.cfg [instrument.excitationled2] calibrationdrivecurrentma1 = 2000 ; MiSeqOverride.cfg calibrationdrivecurrentma2 = 3000 ; MiSeqOverride.cfg calibrationdrivecurrentma3 = 4000 ; MiSeqOverride.cfg calibrationdrivecurrentma4 = 5000 ; MiSeqOverride.cfg calibrationdrivecurrentma5 = 6500 ; MiSeqOverride.cfg calibrationdrivecurrentma6 = 8500 ; MiSeqOverride.cfg calibrationphotodiodeadc1 = 948 ; MiSeqOverride.cfg calibrationphotodiodeadc2 = 1277 ; MiSeqOverride.cfg calibrationphotodiodeadc3 = 1574 ; MiSeqOverride.cfg calibrationphotodiodeadc4 = 1839 ; MiSeqOverride.cfg calibrationphotodiodeadc5 = 2196 ; MiSeqOverride.cfg calibrationphotodiodeadc6 = 2594 ; MiSeqOverride.cfg calibrationpowermetermw1 = 86 ; MiSeqOverride.cfg calibrationpowermetermw2 = 116 ; MiSeqOverride.cfg calibrationpowermetermw3 = 140 ; MiSeqOverride.cfg calibrationpowermetermw4 = 162 ; MiSeqOverride.cfg calibrationpowermetermw5 = 190 ; MiSeqOverride.cfg calibrationpowermetermw6 = 218 ; MiSeqOverride.cfg color = Green ; ExcitationLEDs.cfg cosmeticname = GreenLED ; ExcitationLEDs.cfg currentmaperdacunit = 2.2393 ; MiSeq.cfg enablepolling = false ; ExcitationLEDs.cfg enablepowermode = true ; MiSeq.cfg ledcontinuouscurrentma = 2000 ; MiSeq.cfg ledcontinuouspowermw = 75 ; MiSeq.cfg ledsnapcurrentma = 6500 ; MiSeq.cfg ledsnappowermw = 180 ; MiSeq.cfg maxledcontinuouscurrentma = 2000 ; MiSeq.cfg maxledcontinuouspowermw = 75 ; MiSeq.cfg maxledsnapcurrentma = 7000 ; MiSeq.cfg maxledsnappowermw = 185 ; MiSeq.cfg minledcontinuouspowermw = 0 ; MiSeq.cfg minledcurrentma = 0 ; ExcitationLEDs.cfg minledsnappowermw = 0 ; MiSeq.cfg numcalibrationpoints = 6 ; MiSeqOverride.cfg overtemperaturelimitadc = 3000 ; ExcitationLEDs.cfg pollinglogintervalms = 10000 ; ExcitationLEDs.cfg powermwfortile1 = 180 ; MiSeq.cfg powermwfortile2 = 180 ; MiSeq.cfg powermwfortile3 = 180 ; MiSeq.cfg powermwfortile4 = 180 ; MiSeq.cfg powermwfortile5 = 180 ; MiSeq.cfg powermwfortile6 = 180 ; MiSeq.cfg powermwfortile7 = 180 ; MiSeq.cfg powermwfortile8 = 180 ; MiSeq.cfg powermwfortile9 = 180 ; MiSeq.cfg powermwfortile10 = 180 ; MiSeq.cfg powermwfortile11 = 180 ; MiSeq.cfg powermwfortile12 = 180 ; MiSeq.cfg powermwfortile13 = 180 ; MiSeq.cfg powermwfortile14 = 180 ; MiSeq.cfg powerpertilenumtiles = 14 ; MiSeq.cfg usepowerpertilemode = false ; MiSeq.cfg wavelength = 532 ; ExcitationLEDs.cfg [instrument.fluidics] ; Fluidics.cfg [instrument.fluidics.chillertemperaturecontroller] calibrationhighmeasured = 28 ; Fluidics.cfg calibrationhightarget = 28 ; Fluidics.cfg calibrationlowmeasured = 4 ; Fluidics.cfg calibrationlowtarget = 4 ; Fluidics.cfg coolingderivativeterm = 0 ; Fluidics.cfg coolingestimatedundershoot = 1 ; Fluidics.cfg coolingfeedforwardstepsize = 6.0 ; Fluidics.cfg coolingfeedforwardthreshold = 6.0 ; Fluidics.cfg coolingintegralterm = 0.1 ; Fluidics.cfg coolingmaxvoltage = 1.8 ; Fluidics.cfg coolingproportionalterm = 10.0 ; Fluidics.cfg cosmeticname = ChillerTempControl ; Fluidics.cfg detailedlogging = false ; Fluidics.cfg enablepolling = true ; Fluidics.cfg floattointegerscale = 1000000 ; Fluidics.cfg heatingderivativeterm = 0.0 ; Fluidics.cfg heatingestimatedovershoot = 1 ; Fluidics.cfg heatingfeedforwardstepsize = 2.5 ; Fluidics.cfg heatingfeedforwardthreshold = 10.0 ; Fluidics.cfg heatingintegralterm = 0.1 ; Fluidics.cfg heatingmaxvoltage = 1.8315 ; Fluidics.cfg heatingproportionalterm = 10.0 ; Fluidics.cfg initialintegralwhenswitching = 1 ; Fluidics.cfg innerouterloop = 1 ; Fluidics.cfg loggingrateseconds = 60 ; Fluidics.cfg lowerbound = 0.1 ; Fluidics.cfg maxtemp = 30 ; Fluidics.cfg mintemp = 1 ; Fluidics.cfg samplerateseconds = 1 ; Fluidics.cfg samplingrateseconds = 5 ; Fluidics.cfg startteconinit = true ; Fluidics.cfg targettemponinit = 4 ; Fluidics.cfg tecnumber = 1 ; Fluidics.cfg useambientmode = false ; Fluidics.cfg [instrument.fluidics.chillertemperaturecontroller.chillerinnertecblock] coolingderivativeterm = 0.0 ; Fluidics.cfg coolingestimatedundershoot = 1 ; Fluidics.cfg coolingfeedforwardstepsize = 2.2727 ; Fluidics.cfg coolingfeedforwardthreshold = 6.0 ; Fluidics.cfg coolingintegralterm = 0.01 ; Fluidics.cfg coolingmaxvoltage = 2.2727 ; Fluidics.cfg coolingproportionalterm = 1.0 ; Fluidics.cfg floattointegerscale = 1000000 ; Fluidics.cfg heatingderivativeterm = 0.0 ; Fluidics.cfg heatingestimatedovershoot = 1 ; Fluidics.cfg heatingfeedforwardstepsize = 2.5 ; Fluidics.cfg heatingfeedforwardthreshold = 10.0 ; Fluidics.cfg heatingintegralterm = 0.01 ; Fluidics.cfg heatingmaxvoltage = 2.2727 ; Fluidics.cfg heatingproportionalterm = 1.0 ; Fluidics.cfg initialintegralwhenswitching = 0.0 ; Fluidics.cfg innerouterloop = 0 ; Fluidics.cfg maxtemp = 30 ; Fluidics.cfg mintemp = 1 ; Fluidics.cfg samplerateseconds = 1 ; Fluidics.cfg tecnumber = 1 ; Fluidics.cfg useambientmode = false ; Fluidics.cfg [instrument.fluidics.flowcellfluidics1] cosmeticname = FlowCell ; Fluidics.cfg [instrument.fluidics.flowcellfluidics1.cavrolanepump] allowdispensetobypass = false ; Fluidics.cfg asyncdeliverydelay = true ; Fluidics.cfg baudrate = 9600 ; Fluidics.cfg comportname = COM5 ; Fluidics.cfg cosmeticname = LanePump ; Fluidics.cfg delaymsbetweendispenseandsolenoid = 2 ; Fluidics.cfg delaymsbetweenreagentvalveandaspirate = 100 ; Fluidics.cfg delaymsforsolution1 = 2000 ; Fluidics.cfg delaymsforsolution2 = 2000 ; Fluidics.cfg delaymsforsolution3 = 2000 ; Fluidics.cfg delaymsforsolution4 = 2000 ; Fluidics.cfg delaymsforsolution5 = 2000 ; Fluidics.cfg delaymsforsolution6 = 2000 ; Fluidics.cfg delaymsforsolution7 = 2000 ; Fluidics.cfg delaymsforsolution8 = 2000 ; Fluidics.cfg delaymsforsolution9 = 2000 ; Fluidics.cfg delaymsforsolution10 = 2000 ; Fluidics.cfg delaymsforsolution11 = 2000 ; Fluidics.cfg delaymsforsolution12 = 2000 ; Fluidics.cfg delaymsforsolution13 = 2000 ; Fluidics.cfg delaymsforsolution14 = 2000 ; Fluidics.cfg delaymsforsolution15 = 2000 ; Fluidics.cfg delaymsforsolution16 = 2000 ; Fluidics.cfg delaymsforsolution17 = 2000 ; Fluidics.cfg delaymsforsolution18 = 2000 ; Fluidics.cfg delaymsforsolution19 = 2000 ; Fluidics.cfg delaymsforsolution20 = 2000 ; Fluidics.cfg delaymsforsolution21 = 2000 ; Fluidics.cfg delaymsforsolution22 = 2000 ; Fluidics.cfg delaymsforsolution23 = 2000 ; Fluidics.cfg delaymsforsolution24 = 2000 ; Fluidics.cfg delaymsforsolution25 = 2000 ; Fluidics.cfg flushandwarn = true ; Fluidics.cfg fpgacommandprefix = P1 ; Fluidics.cfg handshake = None ; Fluidics.cfg maxvelocityulperminute = 7500 ; Fluidics.cfg minvelocityulperminute = 13 ; Fluidics.cfg movetostartspeedulpermin = 2500 ; Fluidics.cfg multiaspirate = true ; Fluidics.cfg speedcommand = V ; Fluidics.cfg stepsperfullstroke = 3000 ; Fluidics.cfg syringevolumeul = 500 ; Shock.cfg [instrument.fluidics.flowcellfluidics1.cavrolanepump.rheodyneselectorvalve] airposition = 23 ; Fluidics.cfg avoidposition = 18 ; Fluidics.cfg baudrate = 19200 ; Fluidics.cfg comportname = COM6 ; Fluidics.cfg controllerbusypollrate = 420 ; Fluidics.cfg controllerbusytimeoutms = 60000 ; Fluidics.cfg cosmeticname = ReagentValve ; Fluidics.cfg flushandwarn = false ; Fluidics.cfg flushdelaybetweenchars = 20 ; Fluidics.cfg fpgacommandprefix = P2 ; Fluidics.cfg handshake = None ; Fluidics.cfg hometimeoutms = 60000 ; Fluidics.cfg initialposition = 24 ; Fluidics.cfg numberofports = 24 ; Fluidics.cfg numberofretries = 4 ; Fluidics.cfg plugposition = 24 ; Fluidics.cfg [instrument.fluidics.flowcellfluidics1.cavrolanepump.viciselectorvalve] airposition = 23 ; Fluidics.cfg avoidposition = 18 ; Fluidics.cfg baudrate = 9600 ; Fluidics.cfg comportname = COM2 ; Fluidics.cfg cosmeticname = ReagentValve ; Fluidics.cfg flushandwarn = false ; Fluidics.cfg flushdelaybetweenchars = 20 ; Fluidics.cfg handshake = None ; Fluidics.cfg initialposition = 24 ; Fluidics.cfg numberofports = 24 ; Fluidics.cfg numberofretries = 10 ; Fluidics.cfg plugposition = 24 ; Fluidics.cfg [instrument.fluidics.flowcellfluidics1.flowcelltemperaturecontroller] ambientmodedeadband = 2.0 ; Fluidics.cfg calibrationhighmeasured = 92.8 ; MiSeqOverride.cfg calibrationhightarget = 96 ; MiSeqOverride.cfg calibrationlowmeasured = 16.6 ; MiSeqOverride.cfg calibrationlowtarget = 16 ; MiSeqOverride.cfg commandforoldcomboboard70c = TEC2TCIRC 4990 10000 1500 31600 3976 ; Fluidics.cfg coolingderivativeterm = 0.0 ; Fluidics.cfg coolingestimatedundershoot = 1 ; Fluidics.cfg coolingfeedforwardstepsize = 6.0 ; Fluidics.cfg coolingfeedforwardthreshold = 6.0 ; Fluidics.cfg coolingintegralterm = 0 ; Fluidics.cfg coolingmaxvoltage = 1.2000 ; Fluidics.cfg coolingproportionalterm = 1.0 ; Fluidics.cfg cosmeticname = FlowCellTempControl ; Fluidics.cfg detailedlogging = false ; Fluidics.cfg enablehighspeedpolling = true ; Fluidics.cfg enablepolling = true ; Fluidics.cfg floattointegerscale = 1000000 ; Fluidics.cfg heatingderivativeterm = 0.0 ; Fluidics.cfg heatingestimatedovershoot = 1 ; Fluidics.cfg heatingfeedforwardstepsize = 2.5 ; Fluidics.cfg heatingfeedforwardthreshold = 10.0 ; Fluidics.cfg heatingintegralterm = 0.05 ; Fluidics.cfg heatingmaxvoltage = 2.25 ; Fluidics.cfg heatingproportionalterm = 0.25 ; Fluidics.cfg highspeedpollingratems = 1000 ; Fluidics.cfg initialintegralwhenswitching = 1 ; Fluidics.cfg innerouterloop = 0 ; Fluidics.cfg loggingrateseconds = 30 ; Fluidics.cfg maxtemp = 96.5 ; MiSeq.cfg mintemp = 10 ; Fluidics.cfg samplerateseconds = 1 ; Fluidics.cfg samplingrateseconds = 5 ; Fluidics.cfg startteconinit = false ; Fluidics.cfg supports96c = true ; MiSeq.cfg targettemponinit = 25 ; Fluidics.cfg tecnumber = 2 ; Fluidics.cfg useambientmode = true ; Fluidics.cfg [instrument.fluidics.flowcellfluidics1.flowsensor] bubbleburstmaxedgespertimespan = 50 ; Fluidics.cfg bubbleburstminallowedtimespanms = 500 ; Fluidics.cfg bubblereportintervalms = 5000 ; Fluidics.cfg calculatesimfpgaresponse = true ; Fluidics.cfg commandedbubblevolumeul = 10 ; Fluidics.cfg commandedflowrateulpermin = 2000 ; Fluidics.cfg debugforcebubblesenabled = false ; Fluidics.cfg debugforcebubblesintervalms = 10 ; Fluidics.cfg debugforcebubblesperinterval = 1 ; Fluidics.cfg errorthresholdpercent = 20 ; Fluidics.cfg firstsensortimeoutms = 15000 ; Fluidics.cfg fpgacommandtimeoutms = 20000 ; Fluidics.cfg intialprimevolume = 1000 ; Fluidics.cfg lastcalibrated = 3/13/2015 8:40:55 AM ; MiSeqOverride.cfg maxbubblesallowedperreportinterval = 250 ; Fluidics.cfg maxcorrelation = 0.3 ; Fluidics.cfg measureflowratefpgacommand = FLOW2ARM ; Fluidics.cfg monitorbubblesduringrun = true ; Fluidics.cfg onlyonebubbleratewarningperrun = true ; Fluidics.cfg simulatedfpgaresponse = t1=9000,tof=3000,bl=500,trp=1 ; Fluidics.cfg solution = 3 ; Fluidics.cfg volumebetweensensorsul = 20.13 ; Fluidics.cfg volumereagentvalvetofirstsensorul = 200 ; Fluidics.cfg [instrument.focusmirror] currentpercentnormal = 80 ; MiSeqCommon.cfg currentpercenttiltfocus = 80 ; MiSeqCommon.cfg delayms = 200 ; MiSeqCommon.cfg ignoresensorerrors = false ; MiSeqCommon.cfg setcurrentcommand = FOCMRRCUR ; MiSeqCommon.cfg setdelaycommand = FOCMRRDLY ; MiSeqCommon.cfg [instrument.fpga] baudrate = 115200 ; FPGA.cfg command_delay = 1 ; FPGA.cfg commandcomportname = COM3 ; FPGA.cfg commandhandshake = none ; FPGA.cfg requiredfpgaversionprefix = 9 ; MiSeq.cfg resettimeoutms = 15000 ; FPGA.cfg response_receiverpollingintervalms = 0 ; FPGA.cfg responsecomportname = COM4 ; FPGA.cfg responsehandshake = none ; FPGA.cfg simulatedversion = 9.99.99 ; MiSeq.cfg [instrument.sensors] ; Sensors.cfg [instrument.sensors.chillerdooropensensor] invertsensor = false ; Sensors.cfg simulatedsensorstate = false ; Sensors.cfg statusparamtag = CD ; Sensors.cfg [instrument.sensors.flowcellclampclosedsensor] invertsensor = false ; Sensors.cfg readsensorcommand = TEC2CLMP? ; Sensors.cfg simulatedsensorstate = true ; Sensors.cfg [instrument.sensors.reagenttraypresentsensor] invertsensor = true ; Sensors.cfg simulatedsensorstate = true ; Sensors.cfg statusparamtag = RP ; Sensors.cfg [instrument.sensors.rfid] ; Sensors.cfg [instrument.sensors.rfid.flowcellcartridgerfidsensor] rfiddevicenumber = 1 ; Sensors.cfg simulatedexpirationdate = Oct 1, 2099 ; Sensors.cfg simulatedlotnumber = 9999999 ; Sensors.cfg simulatednumberofcycles = 350 ; Sensors.cfg simulatednumberofruns = 1 ; Sensors.cfg simulatednumberoftiles = 28 ; Sensors.cfg simulatedpairedend = true ; Sensors.cfg simulatedpartnumber = 1111111111 ; Sensors.cfg simulatedpartnumberrevision = C ; Sensors.cfg simulatedreaderror = false ; Sensors.cfg simulatedreagentcartridgeversion = 1 ; Sensors.cfg simulatedrunid = This is run ID 123.456.78911111119 ; Sensors.cfg simulatedserialnumber = FC1234567-ABCDE ; Sensors.cfg simulatedsignature = AAAAAAAA BBBBBBBB CCCCCCCC DDDDDDDD EEEEEEEE ; Sensors.cfg simulateduid = E007ABAC 0BCD975E ; Sensors.cfg simulatedwriteerror = false ; Sensors.cfg [instrument.sensors.rfid.pr2rfidsensor] rfiddevicenumber = 3 ; Sensors.cfg simulatedexpirationdate = Oct 1, 2099 ; Sensors.cfg simulatedlotnumber = 9999999 ; Sensors.cfg simulatednumberofcycles = 350 ; Sensors.cfg simulatednumberofruns = 1 ; Sensors.cfg simulatednumberoftiles = 28 ; Sensors.cfg simulatedpairedend = true ; Sensors.cfg simulatedpartnumber = 3333333333 ; Sensors.cfg simulatedpartnumberrevision = B ; Sensors.cfg simulatedreaderror = false ; Sensors.cfg simulatedreagentcartridgeversion = 1 ; Sensors.cfg simulatedrunid = This is run ID 123.456.78911111119 ; Sensors.cfg simulatedserialnumber = PR1234567-ABCDE ; Sensors.cfg simulatedsignature = AAAAAAAA BBBBBBBB CCCCCCCC DDDDDDDD EEEEEEEE ; Sensors.cfg simulateduid = E0041234 ABCD1234 ; Sensors.cfg simulatedwriteerror = false ; Sensors.cfg [instrument.sensors.rfid.reagentrfidsensor] rfiddevicenumber = 2 ; Sensors.cfg simulatedexpirationdate = Oct 1, 2099 ; Sensors.cfg simulatedlotnumber = 9999999 ; Sensors.cfg simulatednumberofcycles = 350 ; Sensors.cfg simulatednumberofruns = 1 ; Sensors.cfg simulatednumberoftiles = 28 ; Sensors.cfg simulatedpairedend = true ; Sensors.cfg simulatedpartnumber = 2222222222 ; Sensors.cfg simulatedpartnumberrevision = A ; Sensors.cfg simulatedreaderror = false ; Sensors.cfg simulatedreagentcartridgeversion = 1 ; Sensors.cfg simulatedrunid = This is run ID 123.456.78911111119 ; Sensors.cfg simulatedserialnumber = RG1234567-00CDE ; Sensors.cfg simulatedsignature = AAAAAAAA BBBBBBBB CCCCCCCC DDDDDDDD EEEEEEEE ; Sensors.cfg simulateduid = E0071234 A0A0A0A0 ; Sensors.cfg simulatedwriteerror = false ; Sensors.cfg [instrument.sensors.sampledooropensensor] invertsensor = true ; Sensors.cfg simulatedsensorstate = false ; Sensors.cfg statusparamtag = SD ; Sensors.cfg [instrument.sensors.wasteandpr2sipperdownsensor] invertsensor = true ; Sensors.cfg simulatedsensorstate = true ; Sensors.cfg statusparamtag = WS ; Sensors.cfg [instrument.sensors.wastebottlefullsensor] invertsensor = false ; Sensors.cfg simulatedsensorstate = false ; Sensors.cfg statusparamtag = WF ; Sensors.cfg [instrument.sensors.wastebottleinstalledsensor] invertsensor = false ; Sensors.cfg simulatedsensorstate = true ; Sensors.cfg statusparamtag = WI ; Sensors.cfg [instrument.sippermotor] currentpercent = 70 ; MiSeqOverride.cfg movedowncommand = SIPDOWN ; SipperMotor.cfg moveupcommand = SIPUP ; SipperMotor.cfg readdownsensorcommand = SIPDNSNSRRD ; SipperMotor.cfg readupsensorcommand = SIPUPSNSRRD ; SipperMotor.cfg setcurrentcommand = SIPCUR ; SipperMotor.cfg setvelocitycommand = SIPVEL ; SipperMotor.cfg velocitypercent = 30 ; SipperMotor.cfg [instrument.sonycamera] cosmeticname = Camera ; SonyCamera.cfg enablefpgaledexposurecontrol = true ; SonyCamera.cfg extradelaybeforereturnms = 0 ; SonyCamera.cfg maxretries = 3 ; SonyCamera.cfg numsensors = 2 ; MiSeqPilot.cfg simulatedpath = D:\Simulator\Illunis ; SonyCamera.cfg skipsimulationimaging = false ; SonyCamera.cfg triggermode = HardwareTrigger ; MiSeqPilot.cfg uselegacydriver = false ; MiSeqPilot.cfg waittimebeforeinitializeafterpowercycle = 20000 ; SonyCamera.cfg warningifdurationms = 2000 ; SonyCamera.cfg [instrument.statuslights] ; StatusLights.cfg [instrument.statuslights.ledbars] ; StatusLights.cfg [instrument.statuslights.ledbars.ledbar1] ; StatusLights.cfg [instrument.statuslights.ledbars.ledbar2] ; StatusLights.cfg [instrument.ymotor_fpgastepper] accelcontrolunitspermm2 = 1600 ; YMotor_FPGAStepper.cfg accelerationmmpersecsquared = 1 ; YMotor_FPGAStepper.cfg applicationmaxvelocitymmpersec = 10 ; YMotor_FPGAStepper.cfg applicationminvelocitymmpersec = 0 ; YMotor_FPGAStepper.cfg backlashcorrectionmm = 0.01 ; YMotor_FPGAStepper.cfg closedloopprofilecommand = YVPROF 3 ; YMotor_FPGAStepper.cfg closedloopusage = Auto ; YMotor_FPGAStepper.cfg controllermaxvelocitycontrolunitspersec = 28800 ; YMotor_FPGAStepper.cfg controllerminvelocitycontrolunitspersec = 48 ; YMotor_FPGAStepper.cfg cosmeticname = Y Motor ; YMotor_FPGAStepper.cfg defaultmotortimeoutms = 60000 ; YMotor_FPGAStepper.cfg defaulttilemovetablenumber = 2 ; YMotor_FPGAStepper.cfg dooropenpollingintervalms = 1000 ; YMotor_FPGAStepper.cfg encodercountspermm = 2048 ; YMotor_FPGAStepper.cfg encodertestmovesizemm = 1.000 ; YMotor_FPGAStepper.cfg encodertestonlyifautodetect = true ; YMotor_FPGAStepper.cfg encodertestsettlingdelayms = 10 ; YMotor_FPGAStepper.cfg encodertesttolerancepercent = 3 ; YMotor_FPGAStepper.cfg encodertestusestablebasedmoves = true ; YMotor_FPGAStepper.cfg extramotiontimeoutms = 60000 ; YMotor_FPGAStepper.cfg failifsampledooropenduringymove = false ; MiSeqSoftware.Hardware.cfg forceclosedloopmovetotile1 = false ; YMotor_FPGAStepper.cfg holdcurrentpercent = 50 ; YMotor_FPGAStepper.cfg homerequiredeveninunsafemode = false ; YMotor_FPGAStepper.cfg homevelocitymmpersec = 10 ; MiSeq.cfg homingtimeoutms = 60000 ; YMotor_FPGAStepper.cfg magnetunderobjectivepositionmm = 0 ; YMotor_FPGAStepper.cfg maxaccelerationmmpersecsquared = 10 ; YMotor_FPGAStepper.cfg maxburnindutycycle = 50 ; YMotor_FPGAStepper.cfg maxflightrecordersamplesperread = 5 ; YMotor_FPGAStepper.cfg maxhomeattempts = 5 ; YMotor_FPGAStepper.cfg maxtolerancemm = 1 ; YMotor_FPGAStepper.cfg minaccelerationmmpersecsquared = 0.1 ; YMotor_FPGAStepper.cfg mintolerancemm = 0.001 ; YMotor_FPGAStepper.cfg movecurrentpercent = 100 ; YMotor_FPGAStepper.cfg numberoftilemovetables = 2 ; YMotor_FPGAStepper.cfg numretries = 2 ; YMotor_FPGAStepper.cfg openloopdeadzoneprofilecommand = YVPROF 3 ; YMotor_FPGAStepper.cfg openloopnoencoderprofilecommand = YVPROF 0 ; YMotor_FPGAStepper.cfg positionpollinginterval = 0 ; YMotor_FPGAStepper.cfg retractforchemistrydistancefrompositivesoftlimitmm = 0.2 ; YMotor_FPGAStepper.cfg reversedirection = false ; YMotor_FPGAStepper.cfg settlingtimems = 3000 ; YMotor_FPGAStepper.cfg shortmovevelocitymmpersec = 2 ; YMotor_FPGAStepper.cfg softlimitnegativemm = 0.0 ; YMotor_FPGAStepper.cfg softlimitpositivemm = 75.58058 ; MiSeqOverride.cfg softlimitsdefinedinconfigfile = true ; YMotor_FPGAStepper.cfg statuspollinginterval = 50 ; YMotor_FPGAStepper.cfg stepspermm = 1600 ; YMotor_FPGAStepper.cfg tablebasedmovesettlingtimems = 800 ; MiSeqOverride.cfg tablebasedmovesettlingtimems2 = 1100 ; YMotor_FPGAStepper.cfg tablebasedtilemovefilepath = Configs\Y Tile Move Tables\1693steps_J32e5_Shaped85Hz_times.txt ; YMotor_FPGAStepper.cfg tablebasedtilemovefilepath2 = Configs\Y Tile Move Tables\1328steps_J32e5_Shaped85Hz_times.txt ; YMotor_FPGAStepper.cfg tablebasedtilemovetolerancemm = 0.5 ; YMotor_FPGAStepper.cfg tablebasedtilemovetriggertolerancesteps = 3 ; YMotor_FPGAStepper.cfg tolerancemm = 0.01 ; YMotor_FPGAStepper.cfg uselimitsensors = false ; YMotor_FPGAStepper.cfg velocitycontrolunitspermm = 1600 ; YMotor_FPGAStepper.cfg velocitygranularitycontrolunitspersec = 1 ; YMotor_FPGAStepper.cfg velocitymmpersecond = 2 ; YMotor_FPGAStepper.cfg [instrument.zmotor_pi_300um] accelcontrolunitspermm2 = 1 ; ZMotor_PI_300um.cfg accelerationmmpersecsquared = 1 ; ZMotor_PI_300um.cfg adc_vmax = 12 ; ZMotor_PI_300um.cfg adc_vmin = -2 ; ZMotor_PI_300um.cfg adcdacvoltageerrorlimit = 1.00 ; ZMotor_PI_300um.cfg adcdacvoltagewarninglimit = 0.300 ; ZMotor_PI_300um.cfg adcnoiseerrorlimit = 3277 ; ZMotor_PI_300um.cfg adcnoisewarninglimit = 655 ; ZMotor_PI_300um.cfg applicationmaxvelocitymmpersec = 1 ; ZMotor_PI_300um.cfg applicationminvelocitymmpersec = 0 ; ZMotor_PI_300um.cfg backlashcorrectionmm = 0 ; ZMotor_PI_300um.cfg calibratedlinearitytesttolerancemm = 0.0001 ; ZMotor_PI_300um.cfg calibrationadcreads = 50 ; ZMotor_PI_300um.cfg calibrationsettlingtimems = 1500 ; ZMotor_PI_300um.cfg controllermaxvelocitycontrolunitspersec = 1 ; ZMotor_PI_300um.cfg controllerminvelocitycontrolunitspersec = 1 ; ZMotor_PI_300um.cfg cosmeticname = Z Motor ; ZMotor_PI_300um.cfg dac_calibrationv1 = 2 ; ZMotor_PI_300um.cfg dac_calibrationv2 = 8 ; ZMotor_PI_300um.cfg dac_vmax = 10 ; ZMotor_PI_300um.cfg dac_vmin = 0 ; ZMotor_PI_300um.cfg defaultmotortimeoutms = 60000 ; ZMotor_PI_300um.cfg extramotiontimeoutms = 0 ; ZMotor_PI_300um.cfg findsoftlimitsnumadcreads = 15 ; ZMotor_PI_300um.cfg findsoftlimitssettlingtimems = 500 ; ZMotor_PI_300um.cfg homerequiredeveninunsafemode = true ; ZMotor_PI_300um.cfg homingtimeoutms = 30000 ; ZMotor_PI_300um.cfg limitsactivehigh = false ; ZMotor_PI_300um.cfg linearitytestnumadcreads = 10 ; ZMotor_PI_300um.cfg linearitytestsettlingtimems = 600 ; ZMotor_PI_300um.cfg linearityteststepmm = 0.008 ; ZMotor_PI_300um.cfg logdatafromallmoves = false ; ZMotor_PI_300um.cfg logstacktraceofmoves = false ; ZMotor_PI_300um.cfg longmovedistanceum = 40 ; ZMotor_PI_300um.cfg longmovesettlingtimems = 500 ; ZMotor_PI_300um.cfg magnetunderobjectivepositionmm = 0 ; ZMotor_PI_300um.cfg marginum = 1 ; ZMotor_PI_300um.cfg maxaccelerationmmpersecsquared = 1 ; ZMotor_PI_300um.cfg maxactualpositionreadtimems = 150 ; ZMotor_PI_300um.cfg maxburnindutycycle = 50 ; ZMotor_PI_300um.cfg maxflightrecordersamplesperread = 5 ; ZMotor_PI_300um.cfg maxtolerancemm = 0.2999 ; ZMotor_PI_300um.cfg minaccelerationmmpersecsquared = 1 ; ZMotor_PI_300um.cfg minallowedsoftlimitspanum = 280 ; ZMotor_PI_300um.cfg mintolerancemm = 0.00001 ; ZMotor_PI_300um.cfg moveadcreads = 10 ; ZMotor_PI_300um.cfg moveyzlegacylogic = false ; ZMotor_PI_300um.cfg numretries = 10 ; ZMotor_PI_300um.cfg piezooverloadmarginvolts = 0.1 ; ZMotor_PI_300um.cfg positionpollinginterval = 0 ; ZMotor_PI_300um.cfg rangemmaccordingtopi = 0.300 ; ZMotor_PI_300um.cfg reversedirection = true ; ZMotor_PI_300um.cfg safenegativelimitmarginum = 5 ; ZMotor_PI_300um.cfg safenegativelimitstepum = 3 ; ZMotor_PI_300um.cfg safepositivelimitmarginum = 5 ; ZMotor_PI_300um.cfg safepositivelimitstepum = 3 ; ZMotor_PI_300um.cfg settlingtimems = 150 ; ZMotor_PI_300um.cfg softlimitnegativemm = -0.290 ; ZMotor_PI_300um.cfg softlimitpositivemm = -0.010 ; ZMotor_PI_300um.cfg softlimitsdefinedinconfigfile = false ; ZMotor_PI_300um.cfg statuspollinginterval = 50 ; ZMotor_PI_300um.cfg stepspermm = 163837.5 ; ZMotor_PI_300um.cfg tolerancemm = 0.004 ; ZMotor_PI_300um.cfg uncalibratedlinearitytesttolerancemm = 0.006 ; ZMotor_PI_300um.cfg useadcreadouts = true ; ZMotor_PI_300um.cfg usesoftlimitsfromcfg = false ; ZMotor_PI_300um.cfg usezmvduringhoming = false ; ZMotor_PI_300um.cfg velocitycontrolunitspermm = 1 ; ZMotor_PI_300um.cfg velocitygranularitycontrolunitspersec = 1 ; ZMotor_PI_300um.cfg velocitymmpersecond = 1 ; ZMotor_PI_300um.cfg [instrument.zmotor_pi_300um.settlingtimetest] endholdtimems = 1000 ; ZMotor_PI_300um.cfg finalpositionwindowms = 100 ; ZMotor_PI_300um.cfg flightrecordersampleperiodus = 1000 ; ZMotor_PI_300um.cfg hysteresisfactor = 0.8 ; ZMotor_PI_300um.cfg maxallowedrisetimems = 100 ; ZMotor_PI_300um.cfg maxallowedsettlingtimems = 150 ; ZMotor_PI_300um.cfg maxallowedtimebetweensamplesms = 30 ; ZMotor_PI_300um.cfg maxfinalerrorum = 0.1 ; ZMotor_PI_300um.cfg maxfinalpeaknoiseum = 10 ; ZMotor_PI_300um.cfg maxfinalstddeviationum = 1 ; ZMotor_PI_300um.cfg maxovershootum = 10 ; ZMotor_PI_300um.cfg maxtestattemptsforoksampledelays = 5 ; ZMotor_PI_300um.cfg minallowedrisetimems = 0 ; ZMotor_PI_300um.cfg numteststothrowout = 1 ; ZMotor_PI_300um.cfg overshootwindowms = 100 ; ZMotor_PI_300um.cfg preconditionatend = false ; ZMotor_PI_300um.cfg preconditionatendholdtimems = 1000 ; ZMotor_PI_300um.cfg settlingtoleranceplusminusum = 0.15 ; ZMotor_PI_300um.cfg settlingwindowms = 200 ; ZMotor_PI_300um.cfg startholdtimems = 1000 ; ZMotor_PI_300um.cfg startsamplingatexistingposition = false ; ZMotor_PI_300um.cfg startsamplingatexistingpositionholdtimems = 1000 ; ZMotor_PI_300um.cfg targetendum = -180 ; ZMotor_PI_300um.cfg targetstartum = -150 ; ZMotor_PI_300um.cfg usehysteresisfactor = true ; ZMotor_PI_300um.cfg [ledbar] blinkdacstepsize = 983 ; MiSeqPilot.cfg blinkratems = 255 ; StatusLights.cfg bluedac = 983 ; MiSeqPilot.cfg greendac = 983 ; MiSeqPilot.cfg maxbluedac = 983 ; MiSeqPilot.cfg maxgreendac = 983 ; MiSeqPilot.cfg maxyellowdac = 1638 ; MiSeqPilot.cfg yellowdac = 1638 ; MiSeqPilot.cfg [ledbars] ledbar = LEDBar ; StatusLights.cfg [lightbartesting] autodisplaydelayms = 3000 ; MiSeqCommon.cfg [mettlertoledo] baudrate = 9600 ; Fluidics.cfg comportname = COM2 ; Fluidics.cfg cosmeticname = Balance ; Fluidics.cfg flushandwarn = false ; Fluidics.cfg handshake = None ; Fluidics.cfg simulated = true ; Fluidics.cfg [miseqsoftware] initialcompensatorposition = IntoPath ; MiSeqSoftware.Hardware.cfg maxlogfilesize = 5000000 ; MiSeqSoftware.Hardware.cfg maxnumlogfiles = 30 ; MiSeqSoftware.Hardware.cfg [multiimageprocessor] enabled = false ; MiSeqCommon.cfg tilescongfigstring = 0-0.001-2:1-0.001-2:2-0.001-2 ; MiSeqCommon.cfg [per tile focus params] tile10deltaz = 0 ; MiSeqCommon.cfg tile11deltaz = 0 ; MiSeqCommon.cfg tile12deltaz = 0 ; MiSeqCommon.cfg tile1deltaz = 0 ; MiSeqCommon.cfg tile2deltaz = 0 ; MiSeqCommon.cfg tile3deltaz = 0 ; MiSeqCommon.cfg tile4deltaz = 0 ; MiSeqCommon.cfg tile5deltaz = 0 ; MiSeqCommon.cfg tile6deltaz = 0 ; MiSeqCommon.cfg tile7deltaz = 0 ; MiSeqCommon.cfg tile8deltaz = 0 ; MiSeqCommon.cfg tile9deltaz = 0 ; MiSeqCommon.cfg [pr2rfidsensor] ; Sensors.cfg [predictive ydrift settings] camerapixelsizeinmicrons = 5.49 ; MiSeqCommon.cfg numcyclebeforeanalysis = 10 ; MiSeqCommon.cfg numcyclesanalyze = 5 ; MiSeqCommon.cfg opticalmagnification = 16.25 ; MiSeqCommon.cfg [reagentrfidsensor] ; Sensors.cfg [reagenttraypresentsensor] ; Sensors.cfg [rfid] allowedblockreaderrorratepercent = 1.0 ; Sensors.cfg flowcellcartridgerfidsensor = FlowcellCartridgeRFIDSensor ; Sensors.cfg functionaltestnumretries = 2 ; Sensors.cfg functionaltestrepeats = 10 ; Sensors.cfg functionaltestrepeatwritemode = false ; Sensors.cfg functionalteststopiferror = true ; Sensors.cfg pr2rfidsensor = PR2RFIDSensor ; Sensors.cfg readblocknumretries = 20 ; Sensors.cfg readuidhardwaretimeoutms = 1000 ; Sensors.cfg readuidnumretries = 8 ; Sensors.cfg reagentrfidsensor = ReagentRFIDSensor ; Sensors.cfg writeblocknumretries = 30 ; Sensors.cfg [rfid.tagtype.4] lockblockhardwaretimeoutms = 5000 ; Sensors.cfg maxsupportedblocknumber = 27 ; Sensors.cfg minsupportedblocknumber = 0 ; Sensors.cfg optionflag = 0 ; Sensors.cfg readblockhardwaretimeoutms = 5000 ; Sensors.cfg readuidhardwaretimeoutms = 5000 ; Sensors.cfg tagtypename = NXP ; Sensors.cfg writeblockhardwaretimeoutms = 5000 ; Sensors.cfg [rfid.tagtype.7] lockblockhardwaretimeoutms = 5000 ; Sensors.cfg maxsupportedblocknumber = 63 ; Sensors.cfg minsupportedblocknumber = 0 ; Sensors.cfg optionflag = 1 ; Sensors.cfg readblockhardwaretimeoutms = 5000 ; Sensors.cfg readuidhardwaretimeoutms = 5000 ; Sensors.cfg tagtypename = TI ; Sensors.cfg writeblockhardwaretimeoutms = 5000 ; Sensors.cfg [rheodyneselectorvalve] ; Fluidics.cfg [sampledooropensensor] ; Sensors.cfg [sensors] chillerdooropensensor = ChillerDoorOpenSensor ; Sensors.cfg flowcellclampclosedsensor = FlowcellClampClosedSensor ; Sensors.cfg reagenttraypresentsensor = ReagentTrayPresentSensor ; Sensors.cfg rfid = RFID ; Sensors.cfg sampledooropensensor = SampleDoorOpenSensor ; Sensors.cfg wasteandpr2sipperdownsensor = WasteAndPR2SipperDownSensor ; Sensors.cfg wastebottlefullsensor = WasteBottleFullSensor ; Sensors.cfg wastebottleinstalledsensor = WasteBottleInstalledSensor ; Sensors.cfg [sequencing channel a] cameraintegrationtimems = 200 ; MiSeqCommon.cfg flipimagehorizontally = true ; MiSeqCommon.cfg index = 0 ; MiSeqCommon.cfg ledpath = 0 ; MiSeqCommon.cfg ledpower = 100 ; MiSeqCommon.cfg sensorpath = 1 ; MiSeqCommon.cfg [sequencing channel c] cameraintegrationtimems = 200 ; MiSeqCommon.cfg flipimagehorizontally = false ; MiSeqCommon.cfg index = 3 ; MiSeqCommon.cfg ledpath = 0 ; MiSeqCommon.cfg ledpower = 100 ; MiSeqCommon.cfg sensorpath = 0 ; MiSeqCommon.cfg [sequencing channel focus a] cameraintegrationtimems = 200 ; MiSeqCommon.cfg flipimagehorizontally = true ; MiSeqCommon.cfg index = 0 ; MiSeqCommon.cfg ledpath = 0 ; MiSeqCommon.cfg ledpower = 100 ; MiSeqCommon.cfg sensorpath = 1 ; MiSeqCommon.cfg [sequencing channel focus c] cameraintegrationtimems = 450 ; MiSeqCommon.cfg index = 3 ; MiSeqCommon.cfg ledpath = 0 ; MiSeqCommon.cfg ledpower = 100 ; MiSeqCommon.cfg sensorpath = 0 ; MiSeqCommon.cfg [sequencing channel focus g] cameraintegrationtimems = 200 ; MiSeqCommon.cfg flipimagehorizontally = true ; MiSeqCommon.cfg index = 1 ; MiSeqCommon.cfg ledpath = 1 ; MiSeqCommon.cfg ledpower = 100 ; MiSeqCommon.cfg sensorpath = 1 ; MiSeqCommon.cfg [sequencing channel focus t] cameraintegrationtimems = 200 ; MiSeqCommon.cfg index = 2 ; MiSeqCommon.cfg ledpath = 1 ; MiSeqCommon.cfg ledpower = 100 ; MiSeqCommon.cfg sensorpath = 0 ; MiSeqCommon.cfg [sequencing channel g] cameraintegrationtimems = 200 ; MiSeqCommon.cfg flipimagehorizontally = true ; MiSeqCommon.cfg index = 1 ; MiSeqCommon.cfg ledpath = 1 ; MiSeqCommon.cfg ledpower = 100 ; MiSeqCommon.cfg sensorpath = 1 ; MiSeqCommon.cfg [sequencing channel t] cameraintegrationtimems = 200 ; MiSeqCommon.cfg flipimagehorizontally = false ; MiSeqCommon.cfg index = 2 ; MiSeqCommon.cfg ledpath = 1 ; MiSeqCommon.cfg ledpower = 100 ; MiSeqCommon.cfg sensorpath = 0 ; MiSeqCommon.cfg [sequencing channels] channel1 = A ; MiSeqCommon.cfg channel2 = G ; MiSeqCommon.cfg channel3 = T ; MiSeqCommon.cfg channel4 = C ; MiSeqCommon.cfg [stagesafety] unsafemovesallowed = false ; MiSeqCommon.cfg [statuslights] ledbars = LEDBars ; StatusLights.cfg [system] cloudservice = Illumina BaseSpace Broker ; MiSeqCommon.cfg defaultflowcell = MiSeq14Tiles ; ShockProto.cfg defaulttimeoutms = 60000 ; MiSeqCommon.cfg diagnosticsfolder = D:\DiagResults ; MiSeqCommon.cfg fastsimulation = true ; MiSeqCommon.cfg firsttimesetupfile = D:\MiSeqFirstTimeSetup.xml ; MiSeqCommon.cfg fpgaflashdefaultfolder = D:\ ; MiSeqCommon.cfg initializeallinserial = false ; MiSeqCommon.cfg instrumenttype = Shock ; MiSeqOverride.cfg logsleepbetweenmax = 700 ; MiSeqCommon.cfg logsleepbetweenmin = 150 ; MiSeqCommon.cfg logsleepmaxdepth = 10 ; MiSeqCommon.cfg logsleepmode = LogIfTooLong ; MiSeqCommon.cfg logsleeptoolongmargin = 1000 ; MiSeqCommon.cfg maintenancelogsfolder = D:\Illumina Maintenance Logs ; MiSeqCommon.cfg name = M03814 ; MiSeqOverride.cfg priorityclass = High ; MiSeqCommon.cfg reportdevicesections = true ; MiSeqCommon.cfg reporterservice = MiSeqReporter ; MiSeqCommon.cfg scancounterfile = D:\ScanCounter.txt ; MiSeqCommon.cfg serverconfigbackupenabled = true ; MiSeqCommon.cfg serverconfigbackuprootfolder = D:\Illumina Maintenance Logs\OverrideBackups ; MiSeqCommon.cfg showsplashscreen = true ; MiSeqCommon.cfg traceiffnotsimulated = false ; MiSeqCommon.cfg [system measurements] actualedgeofslide = 56.41048 ; MiSeqOverride.cfg ystagehometoedgeofslide = 53.01048 ; MiSeqOverride.cfg [thermalsettlingtest] firsttargettemperature = 16 ; MiSeqCommon.cfg fourthtargettemperature = 96 ; MiSeqCommon.cfg secondtargettemperature = 65 ; MiSeqCommon.cfg thirdtargettemperature = 16 ; MiSeqCommon.cfg [user_notification] level = 1 ; MiSeqCommon.cfg type = Warning ; MiSeqCommon.cfg [viciselectorvalve] firmwaremodelvalidprefix1 = I-PD-AMHX ; Fluidics.cfg firmwaremodelvalidprefix2 = I-PD-AMTX ; Fluidics.cfg [wasteandpr2sipperdownsensor] ; Sensors.cfg [wastebottlefullsensor] ; Sensors.cfg [wastebottleinstalledsensor] ; Sensors.cfg