17-03-18 02:26:29.614 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:26:29.624 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:26:29.624 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 02:26:29.624 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:29.624 -07 000000424 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:26:29.634 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:26:29.634 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:29.634 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:26:29.634 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:26:29.634 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:26:29.754 -07 000000467 INF: FPGA: Recv YMVTO 154378 878
17-03-18 02:26:29.754 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 111 ms to get response, and 120 ms overall
17-03-18 02:26:29.754 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 02:26:29.754 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 02:26:29.754 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 121 ms, distance = 0.549 mm, average velocity = 4.533 mm/sec
17-03-18 02:26:31.474 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:26:31.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1490, R2=1552, Total=3042. Warn if over 250 bubbles per interval.
17-03-18 02:26:32.164 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.016692,
17-03-18 02:26:32.754 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:26:32.754 -07 000000512 INF: FPGA: Recv YRDPOS 154388
17-03-18 02:26:32.764 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:26:32.764 -07 000000610 INF: Y Motor: Encoder = 154388 = motor step 120615.6 = 75.3848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:26:32.784 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.004186, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:26:32.784 -07 000000610 INF: Y Motor: Position error after settling = 9 encoder counts (0.004 mm), Delta during settling = 10 counts (0.005 mm)
17-03-18 02:26:32.784 -07 000000610 INF: Y Motor: Moved to 75.3848 after 3164 ms
17-03-18 02:26:32.794 -07 000000610 INF: =================== Cycle #100, Flow Cell Temp 60° ===================
17-03-18 02:26:32.794 -07 000000610 INF: =================== Cycle #100, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:26:32.794 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 02:26:32.794 -07 000000569 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:26:32.804 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:26:32.804 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:26:32.804 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 02:26:32.814 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:26:32.814 -07 000000610 INF: =================== Cycle #100, Flow Cell Temp 60° ===================
17-03-18 02:26:32.814 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:26:32.814 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:26:32.814 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:26:32.844 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:26:32.844 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:26:32.844 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:26:33.144 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:26:33.164 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:26:33.164 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:26:33.214 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:26:33.234 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:26:33.234 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:26:33.334 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:26:33.334 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:26:33.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:33.364 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:26:33.364 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:26:33.364 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:26:33.494 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:26:33.534 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:26:36.474 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 3
17-03-18 02:26:36.474 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=3, R2=2, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1493, R2=1554, Total=3047. Warn if over 250 bubbles per interval.
17-03-18 02:26:36.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:36.694 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:26:37.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:37.144 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:26:37.524 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.990831,
17-03-18 02:26:37.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:37.594 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:37.594 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:26:37.594 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:26:37.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:37.754 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:26:37.754 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:26:37.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:37.914 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:26:37.914 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:26:37.914 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:26:38.044 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:26:38.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:38.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:38.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:38.534 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:26:38.534 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:26:39.754 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:26:39.754 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:26:39.754 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:26:39.774 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:26:39.774 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:26:39.774 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:26:39.914 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:26:39.934 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:26:39.934 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:26:39.984 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:26:40.004 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:26:40.004 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:26:40.104 -07 000000610 INF: =================== Cycle #100, Pumping Reagent CMS (4) ===================
17-03-18 02:26:40.104 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:26:40.104 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:40.134 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:26:40.134 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:26:40.134 -07 000000610 INF: =================== Cycle #100, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:26:40.264 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:26:40.304 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:26:41.474 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:26:41.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1493, R2=1555, Total=3048. Warn if over 250 bubbles per interval.
17-03-18 02:26:41.744 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:41.774 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:26:42.194 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:42.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:42.224 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:26:42.224 -07 000000610 INF: =================== Cycle #100, Pumping Reagent CMS (4) ===================
17-03-18 02:26:42.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:42.384 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:26:42.384 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:26:42.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:42.544 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:26:42.544 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:26:42.544 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:26:42.674 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:26:42.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:42.884 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.962185,
17-03-18 02:26:43.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:43.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:43.164 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:26:43.164 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:26:44.384 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:26:44.384 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:26:44.384 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:26:44.404 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:26:44.404 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:26:44.404 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:26:44.554 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:26:44.574 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:26:44.574 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:26:44.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:26:44.644 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:26:44.644 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:26:44.744 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:26:44.744 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:26:44.744 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:44.774 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:26:44.774 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:26:44.774 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:26:44.904 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:26:44.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:26:45.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:45.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:45.844 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 02:26:45.844 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:26:45.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:46.004 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:26:46.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:26:46.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:46.164 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:26:46.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:26:46.164 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:26:46.294 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:26:46.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:46.474 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:26:46.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1493, R2=1556, Total=3049. Warn if over 250 bubbles per interval.
17-03-18 02:26:46.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:46.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:46.784 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:26:46.784 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:26:46.784 -07 000000430 INF: WaitCommand(10000) start
17-03-18 02:26:46.784 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:26:46.784 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:26:48.004 -07 000000561 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:26:48.004 -07 000000561 INF: LanePump: Xmit /1?\r
17-03-18 02:26:48.034 -07 000000561 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:26:48.034 -07 000000561 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:26:48.164 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:26:48.204 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:26:48.244 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.970374,
17-03-18 02:26:49.734 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:49.764 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:26:50.184 -07 000000561 INF: LanePump: Xmit /1Q\r
17-03-18 02:26:50.214 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:26:50.214 -07 000000561 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:26:50.214 -07 000000561 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:26:50.214 -07 000000561 INF: ===================  ===================
17-03-18 02:26:51.474 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:26:51.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1493, R2=1556, Total=3049. Warn if over 250 bubbles per interval.
17-03-18 02:26:53.604 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.020806,
17-03-18 02:26:56.474 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:26:56.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1493, R2=1556, Total=3049. Warn if over 250 bubbles per interval.
17-03-18 02:26:56.794 -07 000000430 INF: WaitCommand(10000) end
17-03-18 02:26:56.794 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:26:56.794 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:26:56.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:26:56.834 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:26:56.834 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:26:56.834 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:26:56.964 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:26:57.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:26:58.964 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.007176,
17-03-18 02:27:01.484 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:27:01.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1494, R2=1557, Total=3051. Warn if over 250 bubbles per interval.
17-03-18 02:27:03.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:03.164 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:03.584 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:03.614 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:04.034 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:04.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:04.324 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.000345,
17-03-18 02:27:04.484 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:04.514 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:04.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:04.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:04.964 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:27:04.964 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:27:05.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:05.124 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:27:05.124 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:27:05.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:05.284 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:27:05.284 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:27:05.284 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:27:05.414 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:27:05.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:05.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:05.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:05.904 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:27:05.904 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:27:06.484 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 5
17-03-18 02:27:06.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=5, R2=6, Total=11. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:07.124 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:27:07.124 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:27:07.124 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:27:07.144 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:27:07.144 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:27:07.144 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:27:07.354 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:27:07.374 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:27:07.374 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:27:07.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:27:07.444 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:27:07.444 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:27:07.544 -07 000000610 INF: =================== Cycle #100, Pumping Reagent IMT (1) ===================
17-03-18 02:27:07.544 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:27:07.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:07.574 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:27:07.574 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:27:07.574 -07 000000610 INF: =================== Cycle #100, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:27:07.704 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:27:07.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:09.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:09.214 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:09.634 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:09.664 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:09.664 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:27:09.664 -07 000000610 INF: =================== Cycle #100, Pumping Reagent IMT (1) ===================
17-03-18 02:27:09.684 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.994908,
17-03-18 02:27:09.794 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:09.824 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:27:09.824 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:27:09.954 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:09.984 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:27:09.984 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:27:09.984 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:27:10.114 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:27:10.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:10.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:10.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:10.604 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:27:10.604 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:27:11.484 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:11.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:11.824 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:27:11.824 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:27:11.824 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:27:11.844 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:27:11.844 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:27:11.844 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:27:12.074 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:27:12.094 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:27:12.094 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:27:12.144 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:27:12.164 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:27:12.164 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:27:12.264 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:27:12.264 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:27:12.264 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:12.294 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:27:12.294 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:27:12.294 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:27:12.424 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:27:12.464 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:13.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:13.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:13.364 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:27:13.364 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:27:13.494 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:13.524 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:27:13.524 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:27:13.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:13.684 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:27:13.684 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:27:13.684 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:27:13.814 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:27:13.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:14.274 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:14.304 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:14.304 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:27:14.304 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:27:14.304 -07 000000610 INF: =================== Cycle #100, Flow Cell Temp 65° ===================
17-03-18 02:27:14.304 -07 000000610 INF: =================== Cycle #100, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:27:14.304 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:27:14.304 -07 000000576 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:27:14.314 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:27:14.314 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:27:14.314 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-18 02:27:14.324 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:27:14.324 -07 000000610 INF: =================== Cycle #100, Flow Cell Temp 65° ===================
17-03-18 02:27:14.324 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:27:14.324 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:27:15.044 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.970374,
17-03-18 02:27:16.484 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:16.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:20.404 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.000345,
17-03-18 02:27:21.484 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:21.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:25.764 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.008536,
17-03-18 02:27:26.484 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:26.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:31.124 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.023489,
17-03-18 02:27:31.484 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:31.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:36.484 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.008536,
17-03-18 02:27:36.484 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:36.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:41.484 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:41.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:41.844 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.996267,
17-03-18 02:27:44.334 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:27:44.334 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:27:44.334 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:27:44.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:44.464 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:27:44.464 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:27:44.464 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:27:44.594 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:27:44.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:45.174 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:45.204 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:45.204 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-18 02:27:45.204 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:27:45.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:45.364 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:27:45.364 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:27:45.494 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:27:45.524 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:27:45.524 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:27:45.524 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:27:45.654 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:27:45.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:46.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:46.144 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:46.144 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:27:46.144 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:27:46.144 -07 000000444 INF: WaitCommand(30000) start
17-03-18 02:27:46.144 -07 000000629 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:27:46.144 -07 000000629 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:27:46.484 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:46.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:47.204 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.008536,
17-03-18 02:27:47.364 -07 000000629 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:27:47.364 -07 000000629 INF: LanePump: Xmit /1?\r
17-03-18 02:27:47.394 -07 000000629 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:27:47.394 -07 000000629 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:27:47.524 -07 000000629 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:27:47.564 -07 000000629 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:49.904 -07 000000629 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:49.934 -07 000000629 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:27:50.354 -07 000000629 INF: LanePump: Xmit /1Q\r
17-03-18 02:27:50.384 -07 000000629 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:27:50.384 -07 000000629 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 02:27:50.384 -07 000000629 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:27:50.384 -07 000000629 INF: ===================  ===================
17-03-18 02:27:51.484 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:51.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:52.564 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.997626,
17-03-18 02:27:56.484 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:27:56.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:27:57.924 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.993549,
17-03-18 02:28:01.484 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:01.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:28:03.284 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.011254,
17-03-18 02:28:06.484 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:06.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:28:08.644 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.988112,
17-03-18 02:28:11.484 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:11.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:28:14.004 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.023489,
17-03-18 02:28:16.154 -07 000000444 INF: WaitCommand(30000) end
17-03-18 02:28:16.154 -07 000000610 INF: =================== Cycle #100, Flow Cell Temp 22° ===================
17-03-18 02:28:16.154 -07 000000610 INF: =================== Cycle #100, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:28:16.154 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 02:28:16.154 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:28:16.164 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:28:16.164 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:28:16.164 -07 000000512 INF: FPGA: Recv TEC2EN 
17-03-18 02:28:16.174 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:16.174 -07 000000610 INF: =================== Cycle #100, Flow Cell Temp 22° ===================
17-03-18 02:28:16.174 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:28:16.174 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:28:16.174 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:28:16.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:28:16.214 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:28:16.214 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:28:16.214 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:28:16.344 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:28:16.384 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:28:16.484 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:16.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:28:19.364 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.030322,
17-03-18 02:28:19.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:19.544 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:28:19.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:19.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:28:20.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:20.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:20.444 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:28:20.444 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:28:20.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:28:20.604 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:28:20.604 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:28:20.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:28:20.764 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:28:20.764 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:28:20.764 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:28:20.894 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:28:20.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:21.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:21.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:21.384 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:28:21.384 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:28:21.484 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:21.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1499, R2=1563, Total=3062. Warn if over 250 bubbles per interval.
17-03-18 02:28:22.604 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:28:22.604 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:28:22.604 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:28:22.624 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:28:22.624 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:28:22.624 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:28:22.774 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:28:22.794 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:28:22.794 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:28:22.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:28:22.864 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:28:22.864 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:28:22.964 -07 000000610 INF: =================== Cycle #100, Pumping Reagent USM (2) ===================
17-03-18 02:28:22.964 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:28:22.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:28:22.994 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:28:22.994 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:28:22.994 -07 000000610 INF: =================== Cycle #100, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:28:23.124 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:28:23.164 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:28:24.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:24.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:28:24.724 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.996267,
17-03-18 02:28:25.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:25.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:25.084 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:28:25.084 -07 000000610 INF: =================== Cycle #100, Pumping Reagent USM (2) ===================
17-03-18 02:28:25.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:28:25.244 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:28:25.244 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:28:25.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:28:25.404 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:28:25.404 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:28:25.404 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:28:25.534 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:28:25.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:25.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:26.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:26.024 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:28:26.024 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:28:26.484 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:28:26.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:28:27.244 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:28:27.244 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:28:27.244 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:28:27.264 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:28:27.264 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:28:27.264 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:28:27.414 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:28:27.434 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:28:27.434 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:28:27.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:28:27.504 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:28:27.504 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:28:27.604 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:28:27.604 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:28:27.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:28:27.634 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:28:27.634 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:28:27.634 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:28:27.764 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:28:27.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:28:28.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:28.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:28.704 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:28:28.704 -07 000000610 INF: =================== Cycle #100, Pumping Reagent PR2 (3) ===================
17-03-18 02:28:28.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:28:28.864 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:28:28.864 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:28:28.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:28:29.024 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:28:29.024 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:28:29.024 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:28:29.154 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:28:29.184 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:29.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:29.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:29.644 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:28:29.644 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:28:29.644 -07 000000618 INF: WaitCommand(10000) start
17-03-18 02:28:29.644 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:28:29.644 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:28:30.084 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.999021,
17-03-18 02:28:30.864 -07 000000579 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:28:30.864 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 02:28:30.894 -07 000000579 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:28:30.894 -07 000000579 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:28:31.024 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:28:31.064 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:28:31.484 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:31.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:28:32.594 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:32.624 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:28:33.044 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 02:28:33.074 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:28:33.074 -07 000000579 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:28:33.074 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:28:33.074 -07 000000579 INF: ===================  ===================
17-03-18 02:28:35.444 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.000345,
17-03-18 02:28:36.484 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:36.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:28:39.654 -07 000000618 INF: WaitCommand(10000) end
17-03-18 02:28:39.654 -07 000000610 INF: =================== Cycle #100, Imaging ===================
17-03-18 02:28:39.654 -07 000000610 INF: Imaging Cycle 100: ScanTilesCommand Cycle 100 time start.
17-03-18 02:28:39.654 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:28:39.654 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:28:39.684 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:28:39.684 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:28:39.684 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:28:39.984 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:28:40.004 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:28:40.004 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:28:40.054 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:28:40.074 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:28:40.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:28:40.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:28:40.074 -07 000000424 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:28:40.074 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:28:40.074 -07 000000424 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:28:40.074 -07 000000512 INF: FPGA: Recv EXLED1ON 
17-03-18 02:28:40.084 -07 000000424 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:28:40.084 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:28:40.084 -07 000000629 INF: FPGA: Recv EXLED1ADCR 23157
17-03-18 02:28:40.094 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:40.094 -07 000000424 INF: RedLED: Using Red data: Photodiode ADC 23157 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-18 02:28:40.094 -07 000000424 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:28:40.094 -07 000000569 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:28:40.104 -07 000000424 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:40.104 -07 000000424 INF: RedLED: LED was on for 20 ms
17-03-18 02:28:40.104 -07 000000424 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-18 02:28:40.104 -07 000000424 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:28:40.104 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:28:40.104 -07 000000424 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:28:40.104 -07 000000461 INF: FPGA: Recv EXLED2ON 
17-03-18 02:28:40.114 -07 000000424 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:28:40.114 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:28:40.114 -07 000000430 INF: FPGA: Recv EXLED1ADCR 2101
17-03-18 02:28:40.124 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:40.124 -07 000000424 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-18 02:28:40.124 -07 000000424 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:28:40.124 -07 000000579 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:28:40.134 -07 000000424 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:28:40.134 -07 000000424 INF: GreenLED: LED was on for 19 ms
17-03-18 02:28:40.134 -07 000000424 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 02:28:40.134 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:28:40.134 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 02:28:40.144 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:28:40.144 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:28:40.644 -07 000000424 INF: FPGA: Recv EMOUT
17-03-18 02:28:40.644 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:28:40.644 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:28:40.644 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 02:28:40.654 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:28:40.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:28:40.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.384765625, Z-Position -0.126734715728613. ------
17-03-18 02:28:40.654 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:28:40.654 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17878 mm
17-03-18 02:28:40.654 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:28:40.654 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:28:40.664 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:28:40.664 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:28:40.664 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 39055, sync = True, waitForSettling = False)
17-03-18 02:28:40.664 -07 000000590 INF: Z Motor: Moving to -0.178782 mm, started at -0.126735 mm, distance = -52.05 um
17-03-18 02:28:40.664 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:28:40.664 -07 000000576 INF: Y Motor: Moving to 59.9126 mm, started at 75.3848 mm, delta = -15.4722 mm
17-03-18 02:28:40.674 -07 000000590 INF: FPGA: Xmit ZDACW 39055\n [Z Motor]
17-03-18 02:28:40.674 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:28:40.684 -07 000000590 INF: FPGA: 'ZDACW 39055' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:28:40.684 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:40.684 -07 000000467 INF: FPGA: Recv YRDPOS 154388
17-03-18 02:28:40.694 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:28:40.694 -07 000000576 INF: Y Motor: Encoder = 154388 = motor step 120615.6 = 75.3848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:40.694 -07 000000576 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:28:40.694 -07 000000576 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:28:40.694 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:28:40.694 -07 000000430 INF: FPGA: Recv ZDACR 39055
17-03-18 02:28:40.704 -07 000000590 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:28:40.704 -07 000000576 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:28:40.704 -07 000000590 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:28:40.804 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.993549,
17-03-18 02:28:40.864 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:28:40.864 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:28:41.484 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:41.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:28:42.384 -07 000000629 INF: FPGA: Recv YMVTO 122703 24782
17-03-18 02:28:42.384 -07 000000576 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-18 02:28:42.384 -07 000000576 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:28:42.384 -07 000000576 INF: Y Motor: To move from 75.385 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-18 02:28:42.384 -07 000000576 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1696 ms, distance = 15.472 mm, average velocity = 9.123 mm/sec
17-03-18 02:28:45.234 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:45.234 -07 000000561 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:28:45.244 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:28:45.244 -07 000000576 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:45.274 -07 000000576 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:28:45.274 -07 000000576 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 02:28:45.274 -07 000000576 INF: Y Motor: Moved to 59.9106 after 4609 ms
17-03-18 02:28:45.274 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178782 mm (DAC = 39055)
17-03-18 02:28:45.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.294 -07 000000430 INF: FPGA: Recv ZSGSRD 37123
17-03-18 02:28:45.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:28:45.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.304 -07 000000606 INF: FPGA: Recv ZSGSRD 37117
17-03-18 02:28:45.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.314 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.314 -07 000000461 INF: FPGA: Recv ZSGSRD 37121
17-03-18 02:28:45.324 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.324 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.324 -07 000000424 INF: FPGA: Recv ZSGSRD 37119
17-03-18 02:28:45.334 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.334 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.334 -07 000000444 INF: FPGA: Recv ZSGSRD 37121
17-03-18 02:28:45.344 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.344 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.344 -07 000000629 INF: FPGA: Recv ZSGSRD 37122
17-03-18 02:28:45.354 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.354 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.354 -07 000000618 INF: FPGA: Recv ZSGSRD 37117
17-03-18 02:28:45.364 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.364 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.364 -07 000000462 INF: FPGA: Recv ZSGSRD 37126
17-03-18 02:28:45.374 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.374 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.374 -07 000000512 INF: FPGA: Recv ZSGSRD 37122
17-03-18 02:28:45.384 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.384 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:45.384 -07 000000444 INF: FPGA: Recv ZSGSRD 37118
17-03-18 02:28:45.394 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.394 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:28:45.394 -07 000000455 INF: FPGA: Recv ZPIEZORD 33370
17-03-18 02:28:45.404 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:45.404 -07 000000569 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.959 V. Piezo Error = -8.3 V.
17-03-18 02:28:45.404 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37121 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37121 (-177.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37117 (-177.9 uncal um), Max = 37126 (-177.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:28:45.404 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37121, posNoise = 5, negNoise = 4
17-03-18 02:28:45.404 -07 000000569 INF: Z Motor: After move to -0.178782, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:28:45.404 -07 000000569 INF: Z Motor: Settle wait time = 4613 ms, measure time = 126 ms (allowed 150 ms), total time = 4739 ms
17-03-18 02:28:45.404 -07 000000569 INF: Z Motor: Waiting extra 24 ms after reading position to reach expected total of 150 ms
17-03-18 02:28:45.434 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4773 ms
17-03-18 02:28:45.434 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:28:45.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:28:45.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:28:45.434 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:28:45.434 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:28:45.434 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:28:45.434 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:28:45.434 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:28:45.434 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:28:45.464 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 02:28:45.464 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:28:45.464 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:28:45.464 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:28:45.484 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:28:45.484 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 02:28:45.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:28:45.524 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:28:45.824 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:28:45.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:28:45.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:28:45.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:28:45.864 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:28:45.864 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:28:45.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 02:28:45.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:28:45.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:45.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:28:45.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:28:45.964 -07 000000424 INF: Image SNR check: start
17-03-18 02:28:45.964 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:28:45.964 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:28:45.974 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:28:45.974 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:28:45.974 -07 000000424 INF: Image SNR check: pass  [peak (Max-Min)=160.84]
17-03-18 02:28:45.974 -07 000000424 INF: Autofocus start
17-03-18 02:28:45.974 -07 000000424 INF: MeasureProfile start
17-03-18 02:28:45.984 -07 000000424 INF: MeasureProfile done
17-03-18 02:28:45.994 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:28:45.994 -07 000000424 INF: Autofocus finished
17-03-18 02:28:46.164 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.001704,
17-03-18 02:28:46.174 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:28:46.174 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 207 ms overall
17-03-18 02:28:46.184 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178796530925443. ----------
17-03-18 02:28:46.184 -07 000000610 INF: Cycle	100	Tile	1	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:28:46.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37570, sync = True, waitForSettling = True)
17-03-18 02:28:46.184 -07 000000610 INF: Z Motor: Moving to -0.171984 mm, started at -0.178797 mm, distance = 6.81 um
17-03-18 02:28:46.204 -07 000000610 INF: FPGA: Xmit ZDACW 37570\n [Z Motor]
17-03-18 02:28:46.204 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:28:46.214 -07 000000610 INF: FPGA: 'ZDACW 37570' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:28:46.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:28:46.214 -07 000000579 INF: FPGA: Recv ZDACR 37570
17-03-18 02:28:46.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:28:46.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.374 -07 000000606 INF: FPGA: Recv ZSGSRD 36062
17-03-18 02:28:46.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:28:46.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.384 -07 000000502 INF: FPGA: Recv ZSGSRD 36063
17-03-18 02:28:46.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.394 -07 000000591 INF: FPGA: Recv ZSGSRD 36064
17-03-18 02:28:46.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.404 -07 000000455 INF: FPGA: Recv ZSGSRD 36060
17-03-18 02:28:46.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.414 -07 000000576 INF: FPGA: Recv ZSGSRD 36067
17-03-18 02:28:46.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.424 -07 000000618 INF: FPGA: Recv ZSGSRD 36067
17-03-18 02:28:46.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.434 -07 000000626 INF: FPGA: Recv ZSGSRD 36066
17-03-18 02:28:46.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.444 -07 000000561 INF: FPGA: Recv ZSGSRD 36060
17-03-18 02:28:46.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.454 -07 000000444 INF: FPGA: Recv ZSGSRD 36063
17-03-18 02:28:46.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:46.464 -07 000000576 INF: FPGA: Recv ZSGSRD 36066
17-03-18 02:28:46.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:28:46.474 -07 000000424 INF: FPGA: Recv ZPIEZORD 31962
17-03-18 02:28:46.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:46.484 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -9.0 V.
17-03-18 02:28:46.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36064 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36064 (-171.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36060 (-171.1 uncal um), Max = 36067 (-171.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:28:46.484 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36064, posNoise = 3, negNoise = 4
17-03-18 02:28:46.484 -07 000000610 INF: Z Motor: After move to -0.171984, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:28:46.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 295 ms)
17-03-18 02:28:46.484 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:46.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:28:46.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:28:46.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:28:46.484 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:28:46.484 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:28:46.484 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:28:46.484 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:28:46.484 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:28:46.484 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:28:46.484 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:28:46.484 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:28:46.484 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:28:46.484 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:28:46.494 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:28:46.494 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:28:46.504 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:28:46.504 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:28:46.504 -07 000000606 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 02:28:46.504 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:28:46.514 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:28:46.514 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:28:46.524 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:28:46.524 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 02:28:46.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37747 150\n [Camera]
17-03-18 02:28:46.724 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:28:47.124 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:28:47.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:28:47.124 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:28:47.124 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:28:47.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:28:47.124 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:28:47.124 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:28:47.124 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:28:47.244 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:28:47.244 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:28:47.314 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37747 780
17-03-18 02:28:47.464 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:28:47.514 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:28:47.514 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:28:47.514 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:47.524 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:28:47.524 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:28:47.644 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:28:47.644 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:28:47.644 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:47.644 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:28:47.654 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-18 02:28:47.654 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:28:47.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:28:47.654 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:28:47.654 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:28:47.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:28:47.654 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:28:47.654 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:28:47.654 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:28:47.664 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:28:47.664 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:28:47.844 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:28:47.844 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:28:47.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37747 150' command took 2 ms to send, 1316 ms to get response, and 1319 ms overall
17-03-18 02:28:47.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:28:47.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172006138691602. ------
17-03-18 02:28:47.854 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:28:47.854 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17796 mm
17-03-18 02:28:47.854 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:28:47.854 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:28:47.854 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38875, sync = True, waitForSettling = False)
17-03-18 02:28:47.854 -07 000000467 INF: Z Motor: Moving to -0.177958 mm, started at -0.172006 mm, distance = -5.95 um
17-03-18 02:28:47.854 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:28:47.854 -07 000000502 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 02:28:47.864 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:28:47.864 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:47.864 -07 000000444 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:28:47.874 -07 000000467 INF: FPGA: Xmit ZDACW 38875\n [Z Motor]
17-03-18 02:28:47.874 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:28:47.874 -07 000000502 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:47.874 -07 000000502 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:28:47.874 -07 000000502 INF: Y Motor: Moving 1331 steps2
17-03-18 02:28:47.874 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:28:47.884 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:28:47.884 -07 000000467 INF: FPGA: 'ZDACW 38875' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:28:47.894 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:28:47.904 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:28:47.904 -07 000000561 INF: FPGA: Recv ZDACR 38875
17-03-18 02:28:47.914 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:28:47.914 -07 000000467 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:28:48.054 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:28:48.054 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:28:48.054 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:48.054 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:28:48.054 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:28:48.054 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:48.064 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:28:48.064 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:28:48.064 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:28:48.064 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:28:48.084 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:28:48.084 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:28:48.264 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:28:48.264 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:28:48.304 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:48.304 -07 000000444 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:28:48.314 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:28:48.314 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:48.314 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:28:48.314 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 02:28:49.264 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:49.264 -07 000000461 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:28:49.274 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:28:49.274 -07 000000502 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:49.294 -07 000000502 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:28:49.294 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:28:49.294 -07 000000502 INF: Y Motor: Moved to 60.7329 after 1441 ms (table move)
17-03-18 02:28:49.304 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177958 mm (DAC = 38875)
17-03-18 02:28:49.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.304 -07 000000629 INF: FPGA: Recv ZSGSRD 36989
17-03-18 02:28:49.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:28:49.314 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.314 -07 000000561 INF: FPGA: Recv ZSGSRD 36985
17-03-18 02:28:49.324 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.324 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.324 -07 000000590 INF: FPGA: Recv ZSGSRD 36994
17-03-18 02:28:49.334 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.334 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.334 -07 000000501 INF: FPGA: Recv ZSGSRD 36995
17-03-18 02:28:49.344 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.344 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.344 -07 000000579 INF: FPGA: Recv ZSGSRD 36994
17-03-18 02:28:49.354 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.354 -07 000000591 INF: FPGA: Recv ZSGSRD 36991
17-03-18 02:28:49.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.364 -07 000000462 INF: FPGA: Recv ZSGSRD 36993
17-03-18 02:28:49.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.374 -07 000000430 INF: FPGA: Recv ZSGSRD 36994
17-03-18 02:28:49.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.384 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.384 -07 000000629 INF: FPGA: Recv ZSGSRD 36987
17-03-18 02:28:49.394 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:49.394 -07 000000424 INF: FPGA: Recv ZSGSRD 36987
17-03-18 02:28:49.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.404 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:28:49.404 -07 000000591 INF: FPGA: Recv ZPIEZORD 33219
17-03-18 02:28:49.414 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:49.414 -07 000000512 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.4 V.
17-03-18 02:28:49.414 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36991 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36992 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36985 (-177.0 uncal um), Max = 36995 (-177.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:28:49.414 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36991, posNoise = 4, negNoise = 6
17-03-18 02:28:49.414 -07 000000512 INF: Z Motor: After move to -0.177958, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:28:49.414 -07 000000512 INF: Z Motor: Settle wait time = 1446 ms, measure time = 107 ms (allowed 150 ms), total time = 1553 ms
17-03-18 02:28:49.414 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:28:49.464 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:28:49.464 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:28:49.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:28:49.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:28:49.464 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:28:49.464 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:28:49.464 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:28:49.464 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:28:49.474 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:28:49.474 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:28:49.474 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:28:49.474 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:28:49.484 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:28:49.484 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 02:28:49.484 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:28:49.534 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:28:49.834 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:28:49.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:28:49.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:28:49.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:28:49.874 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:28:49.874 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:28:49.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 387 ms overall
17-03-18 02:28:49.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:28:49.964 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:49.964 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:28:49.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:28:49.974 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:28:49.974 -07 000000576 INF: Autofocus start
17-03-18 02:28:49.974 -07 000000576 INF: MeasureProfile start
17-03-18 02:28:49.974 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:28:49.984 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:28:49.984 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:28:49.984 -07 000000576 INF: MeasureProfile done
17-03-18 02:28:49.984 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:28:49.984 -07 000000576 INF: Autofocus finished
17-03-18 02:28:50.184 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:28:50.184 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:28:50.184 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.177961383347014. ----------
17-03-18 02:28:50.184 -07 000000610 INF: Cycle	100	Tile	2	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:28:50.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37389, sync = True, waitForSettling = True)
17-03-18 02:28:50.194 -07 000000610 INF: Z Motor: Moving to -0.171156 mm, started at -0.177961 mm, distance = 6.81 um
17-03-18 02:28:50.194 -07 000000610 INF: FPGA: Xmit ZDACW 37389\n [Z Motor]
17-03-18 02:28:50.194 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:28:50.204 -07 000000610 INF: FPGA: 'ZDACW 37389' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:28:50.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:28:50.204 -07 000000502 INF: FPGA: Recv ZDACR 37389
17-03-18 02:28:50.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:28:50.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.364 -07 000000444 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:28:50.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:28:50.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.374 -07 000000561 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:28:50.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.384 -07 000000502 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:28:50.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.394 -07 000000591 INF: FPGA: Recv ZSGSRD 35935
17-03-18 02:28:50.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.404 -07 000000590 INF: FPGA: Recv ZSGSRD 35928
17-03-18 02:28:50.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.414 -07 000000579 INF: FPGA: Recv ZSGSRD 35931
17-03-18 02:28:50.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.424 -07 000000561 INF: FPGA: Recv ZSGSRD 35937
17-03-18 02:28:50.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.434 -07 000000461 INF: FPGA: Recv ZSGSRD 35929
17-03-18 02:28:50.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.444 -07 000000618 INF: FPGA: Recv ZSGSRD 35930
17-03-18 02:28:50.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:50.454 -07 000000576 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:28:50.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:28:50.464 -07 000000626 INF: FPGA: Recv ZPIEZORD 31774
17-03-18 02:28:50.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:50.474 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.705 V. Piezo Error = -9.2 V.
17-03-18 02:28:50.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35933 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35934 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35928 (-170.3 uncal um), Max = 35937 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:28:50.474 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35933, posNoise = 4, negNoise = 5
17-03-18 02:28:50.474 -07 000000610 INF: Z Motor: After move to -0.171156, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:28:50.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:28:50.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:28:50.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:28:50.474 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:28:50.474 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:28:50.474 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:28:50.474 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:28:50.474 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:28:50.474 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:28:50.474 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:28:50.474 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:28:50.474 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:28:50.474 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:28:50.484 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:28:50.484 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:28:50.484 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:28:50.484 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:28:50.494 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:28:50.494 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:28:50.494 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:28:50.494 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:28:50.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37566 150\n [Camera]
17-03-18 02:28:50.694 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:28:51.094 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:28:51.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:28:51.094 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:28:51.094 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:28:51.094 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:28:51.094 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:28:51.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:28:51.094 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:28:51.094 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:28:51.094 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:28:51.284 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37566 780
17-03-18 02:28:51.434 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:28:51.474 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:28:51.474 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:28:51.474 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:51.484 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:28:51.484 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:51.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:28:51.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:28:51.484 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:28:51.484 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:51.484 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:28:51.484 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:28:51.484 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:28:51.524 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.039839,
17-03-18 02:28:51.624 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:28:51.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:28:51.624 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:28:51.624 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:28:51.624 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:28:51.624 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:28:51.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:28:51.624 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:28:51.754 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:28:51.754 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:28:51.814 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:28:51.814 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:28:51.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37566 150' command took 4 ms to send, 1306 ms to get response, and 1320 ms overall
17-03-18 02:28:51.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:28:51.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.171164566901031. ------
17-03-18 02:28:51.824 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:28:51.824 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17787 mm
17-03-18 02:28:51.824 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:28:51.824 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:28:51.824 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:28:51.824 -07 000000467 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:28:51.824 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38855, sync = True, waitForSettling = False)
17-03-18 02:28:51.824 -07 000000561 INF: Z Motor: Moving to -0.177867 mm, started at -0.171165 mm, distance = -6.70 um
17-03-18 02:28:51.834 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:28:51.834 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:51.834 -07 000000502 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:28:51.844 -07 000000561 INF: FPGA: Xmit ZDACW 38855\n [Z Motor]
17-03-18 02:28:51.844 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:28:51.844 -07 000000467 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:51.844 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:28:51.844 -07 000000467 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:28:51.844 -07 000000467 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:28:51.854 -07 000000561 INF: FPGA: 'ZDACW 38855' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:28:51.854 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:28:51.864 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:28:51.874 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:28:51.874 -07 000000569 INF: FPGA: Recv ZDACR 38855
17-03-18 02:28:51.884 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:28:51.884 -07 000000561 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:28:52.024 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:28:52.024 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:28:52.024 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:52.034 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:28:52.034 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:28:52.054 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:28:52.054 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:28:52.144 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:28:52.144 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:28:52.144 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:52.144 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:28:52.154 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 02:28:52.234 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:28:52.234 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 02:28:52.284 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:52.284 -07 000000501 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:28:52.294 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:28:52.294 -07 000000467 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:52.294 -07 000000467 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:28:52.294 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.840 mm, average velocity = 2.159 mm/sec
17-03-18 02:28:53.244 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:53.244 -07 000000606 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:28:53.254 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:28:53.254 -07 000000467 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:53.274 -07 000000467 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:28:53.274 -07 000000467 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:28:53.274 -07 000000467 INF: Y Motor: Moved to 61.5640 after 1453 ms (table move)
17-03-18 02:28:53.284 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177867 mm (DAC = 38855)
17-03-18 02:28:53.284 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.284 -07 000000579 INF: FPGA: Recv ZSGSRD 36982
17-03-18 02:28:53.294 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:28:53.294 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.294 -07 000000606 INF: FPGA: Recv ZSGSRD 36974
17-03-18 02:28:53.304 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.304 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.304 -07 000000424 INF: FPGA: Recv ZSGSRD 36980
17-03-18 02:28:53.314 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.314 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.314 -07 000000501 INF: FPGA: Recv ZSGSRD 36981
17-03-18 02:28:53.324 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.324 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.324 -07 000000455 INF: FPGA: Recv ZSGSRD 36983
17-03-18 02:28:53.334 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.334 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.334 -07 000000591 INF: FPGA: Recv ZSGSRD 36981
17-03-18 02:28:53.344 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.344 -07 000000461 INF: FPGA: Recv ZSGSRD 36978
17-03-18 02:28:53.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.354 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.354 -07 000000444 INF: FPGA: Recv ZSGSRD 36972
17-03-18 02:28:53.364 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.364 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.364 -07 000000561 INF: FPGA: Recv ZSGSRD 36972
17-03-18 02:28:53.374 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.374 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:53.374 -07 000000467 INF: FPGA: Recv ZSGSRD 36979
17-03-18 02:28:53.384 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.384 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:28:53.384 -07 000000569 INF: FPGA: Recv ZPIEZORD 33218
17-03-18 02:28:53.394 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:53.394 -07 000000626 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.3 V.
17-03-18 02:28:53.394 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36978 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36980 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36972 (-176.9 uncal um), Max = 36983 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:28:53.394 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36978, posNoise = 5, negNoise = 6
17-03-18 02:28:53.394 -07 000000626 INF: Z Motor: After move to -0.177867, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:28:53.394 -07 000000626 INF: Z Motor: Settle wait time = 1456 ms, measure time = 110 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:28:53.394 -07 000000626 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:28:53.434 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:28:53.434 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:28:53.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:28:53.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:28:53.434 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:28:53.434 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:28:53.434 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:28:53.434 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:28:53.434 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:28:53.434 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:28:53.434 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:28:53.444 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:28:53.454 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-18 02:28:53.454 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:28:53.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:28:53.504 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:28:53.804 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:28:53.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:28:53.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:28:53.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:28:53.844 -07 000000502 INF: FPGA: Recv @CAMSNAP 382
17-03-18 02:28:53.844 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:28:53.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 387 ms overall
17-03-18 02:28:53.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:28:53.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:53.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:28:53.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:28:53.944 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:28:53.944 -07 000000618 INF: Autofocus start
17-03-18 02:28:53.944 -07 000000618 INF: MeasureProfile start
17-03-18 02:28:53.944 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:28:53.954 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:28:53.954 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:28:53.954 -07 000000618 INF: MeasureProfile done
17-03-18 02:28:53.954 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:28:53.954 -07 000000618 INF: Autofocus finished
17-03-18 02:28:54.154 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:28:54.154 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:28:54.154 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.177877868589172. ----------
17-03-18 02:28:54.154 -07 000000610 INF: Cycle	100	Tile	3	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:28:54.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37388, sync = True, waitForSettling = True)
17-03-18 02:28:54.164 -07 000000610 INF: Z Motor: Moving to -0.171151 mm, started at -0.177878 mm, distance = 6.73 um
17-03-18 02:28:54.164 -07 000000610 INF: FPGA: Xmit ZDACW 37388\n [Z Motor]
17-03-18 02:28:54.164 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:28:54.174 -07 000000610 INF: FPGA: 'ZDACW 37388' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:28:54.174 -07 000000561 INF: FPGA: Recv ZDACR 37388
17-03-18 02:28:54.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:28:54.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.344 -07 000000501 INF: FPGA: Recv ZSGSRD 35931
17-03-18 02:28:54.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 12 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:28:54.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.354 -07 000000424 INF: FPGA: Recv ZSGSRD 35927
17-03-18 02:28:54.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.364 -07 000000455 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:28:54.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.374 -07 000000444 INF: FPGA: Recv ZSGSRD 35931
17-03-18 02:28:54.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.384 -07 000000618 INF: FPGA: Recv ZSGSRD 35937
17-03-18 02:28:54.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.394 -07 000000561 INF: FPGA: Recv ZSGSRD 35931
17-03-18 02:28:54.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.404 -07 000000424 INF: FPGA: Recv ZSGSRD 35930
17-03-18 02:28:54.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.414 -07 000000462 INF: FPGA: Recv ZSGSRD 35939
17-03-18 02:28:54.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.424 -07 000000430 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:28:54.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:54.434 -07 000000461 INF: FPGA: Recv ZSGSRD 35932
17-03-18 02:28:54.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:28:54.444 -07 000000561 INF: FPGA: Recv ZPIEZORD 31827
17-03-18 02:28:54.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:54.454 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.705 V. Piezo Error = -9.1 V.
17-03-18 02:28:54.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35933 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35932 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35927 (-170.2 uncal um), Max = 35939 (-170.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:28:54.454 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35933, posNoise = 6, negNoise = 6
17-03-18 02:28:54.454 -07 000000610 INF: Z Motor: After move to -0.171151, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:28:54.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:28:54.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:28:54.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:28:54.454 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:28:54.454 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:28:54.454 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:28:54.454 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:28:54.454 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:28:54.454 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:28:54.454 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:28:54.454 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:28:54.454 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:28:54.454 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:28:54.454 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:28:54.454 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:28:54.464 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:28:54.464 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:28:54.464 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:28:54.464 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:28:54.474 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:28:54.474 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:28:54.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37565 150\n [Camera]
17-03-18 02:28:54.674 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:28:55.064 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:28:55.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:28:55.074 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:28:55.074 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:28:55.074 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:28:55.074 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:28:55.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:28:55.074 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:28:55.074 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:28:55.074 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) start.
17-03-18 02:28:55.264 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37565 780
17-03-18 02:28:55.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:28:55.444 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:28:55.444 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:28:55.444 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:55.444 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:28:55.444 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:28:55.444 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:55.454 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:28:55.454 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:28:55.454 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:28:55.464 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:28:55.604 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:28:55.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:28:55.604 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:28:55.604 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:28:55.604 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:28:55.604 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:28:55.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:28:55.604 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:28:55.724 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:28:55.724 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:28:55.794 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:28:55.794 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:28:55.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37565 150' command took 2 ms to send, 1314 ms to get response, and 1321 ms overall
17-03-18 02:28:55.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:28:55.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171164566901031. ------
17-03-18 02:28:55.794 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:28:55.804 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17746 mm
17-03-18 02:28:55.804 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:28:55.804 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:28:55.804 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:28:55.804 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:28:55.804 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38766, sync = True, waitForSettling = False)
17-03-18 02:28:55.804 -07 000000629 INF: Z Motor: Moving to -0.177459 mm, started at -0.171165 mm, distance = -6.29 um
17-03-18 02:28:55.804 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:28:55.804 -07 000000618 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:28:55.814 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:55.814 -07 000000561 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:28:55.824 -07 000000629 INF: FPGA: Xmit ZDACW 38766\n [Z Motor]
17-03-18 02:28:55.824 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:28:55.824 -07 000000618 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:55.824 -07 000000618 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:28:55.824 -07 000000618 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:28:55.824 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:28:55.834 -07 000000629 INF: FPGA: 'ZDACW 38766' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:28:55.834 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:28:55.834 -07 000000467 INF: FPGA: Recv ZDACR 38766
17-03-18 02:28:55.844 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:28:55.844 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:55.844 -07 000000629 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:28:55.994 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:28:55.994 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:28:55.994 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:55.994 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:28:55.994 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:28:56.004 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:28:56.004 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:28:56.104 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:28:56.104 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:28:56.104 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:56.104 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:28:56.114 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-18 02:28:56.224 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:28:56.224 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 02:28:56.264 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:56.264 -07 000000430 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:28:56.274 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:28:56.274 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:56.274 -07 000000618 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:28:56.274 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.102 mm/sec
17-03-18 02:28:56.484 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:28:56.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:28:56.884 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.027603,
17-03-18 02:28:57.224 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:57.224 -07 000000444 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:28:57.234 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:28:57.234 -07 000000618 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:57.254 -07 000000618 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:28:57.254 -07 000000618 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:28:57.254 -07 000000618 INF: Y Motor: Moved to 62.3955 after 1452 ms (table move)
17-03-18 02:28:57.264 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177459 mm (DAC = 38766)
17-03-18 02:28:57.264 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.264 -07 000000569 INF: FPGA: Recv ZSGSRD 36916
17-03-18 02:28:57.274 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.274 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.274 -07 000000590 INF: FPGA: Recv ZSGSRD 36915
17-03-18 02:28:57.284 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.284 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.284 -07 000000626 INF: FPGA: Recv ZSGSRD 36914
17-03-18 02:28:57.294 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.294 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.294 -07 000000461 INF: FPGA: Recv ZSGSRD 36911
17-03-18 02:28:57.304 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.304 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.304 -07 000000618 INF: FPGA: Recv ZSGSRD 36912
17-03-18 02:28:57.314 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.314 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.314 -07 000000569 INF: FPGA: Recv ZSGSRD 36918
17-03-18 02:28:57.324 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.324 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.324 -07 000000606 INF: FPGA: Recv ZSGSRD 36916
17-03-18 02:28:57.334 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.334 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.334 -07 000000626 INF: FPGA: Recv ZSGSRD 36919
17-03-18 02:28:57.344 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.344 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.344 -07 000000467 INF: FPGA: Recv ZSGSRD 36913
17-03-18 02:28:57.354 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.354 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:57.354 -07 000000561 INF: FPGA: Recv ZSGSRD 36914
17-03-18 02:28:57.364 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.364 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:28:57.364 -07 000000590 INF: FPGA: Recv ZPIEZORD 33150
17-03-18 02:28:57.374 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:57.374 -07 000000462 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.915 V. Piezo Error = -8.3 V.
17-03-18 02:28:57.374 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36915 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36914 (-176.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36911 (-176.6 uncal um), Max = 36919 (-176.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:28:57.374 -07 000000462 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36915, posNoise = 4, negNoise = 4
17-03-18 02:28:57.374 -07 000000462 INF: Z Motor: After move to -0.177459, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:28:57.374 -07 000000462 INF: Z Motor: Settle wait time = 1456 ms, measure time = 110 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:28:57.374 -07 000000462 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:28:57.414 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 02:28:57.414 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:28:57.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:28:57.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:28:57.414 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:28:57.414 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:28:57.414 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:28:57.414 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:28:57.424 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:28:57.424 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:28:57.424 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:28:57.424 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:28:57.424 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:28:57.424 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:28:57.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:28:57.474 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:28:57.774 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:28:57.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:28:57.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:28:57.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1116030168, 0x0, 559484976) start.
17-03-18 02:28:57.814 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:28:57.814 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:28:57.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:28:57.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1116030168, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:28:57.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:57.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:28:57.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:28:57.914 -07 000000502 INF: Autofocus start
17-03-18 02:28:57.914 -07 000000502 INF: MeasureProfile start
17-03-18 02:28:57.914 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:28:57.914 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:28:57.924 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:28:57.924 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:28:57.924 -07 000000502 INF: MeasureProfile done
17-03-18 02:28:57.924 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:28:57.924 -07 000000502 INF: Autofocus finished
17-03-18 02:28:58.124 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:28:58.124 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:28:58.124 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177473143224241. ----------
17-03-18 02:28:58.124 -07 000000610 INF: Cycle	100	Tile	4	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:28:58.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37263, sync = True, waitForSettling = True)
17-03-18 02:28:58.134 -07 000000610 INF: Z Motor: Moving to -0.170579 mm, started at -0.177473 mm, distance = 6.89 um
17-03-18 02:28:58.134 -07 000000610 INF: FPGA: Xmit ZDACW 37263\n [Z Motor]
17-03-18 02:28:58.134 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:28:58.144 -07 000000610 INF: FPGA: 'ZDACW 37263' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:28:58.144 -07 000000618 INF: FPGA: Recv ZDACR 37263
17-03-18 02:28:58.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:28:58.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.304 -07 000000606 INF: FPGA: Recv ZSGSRD 35835
17-03-18 02:28:58.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.314 -07 000000424 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:28:58.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.324 -07 000000590 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:28:58.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.344 -07 000000591 INF: FPGA: Recv ZSGSRD 35843
17-03-18 02:28:58.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35845
17-03-18 02:28:58.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.364 -07 000000501 INF: FPGA: Recv ZSGSRD 35848
17-03-18 02:28:58.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.374 -07 000000444 INF: FPGA: Recv ZSGSRD 35841
17-03-18 02:28:58.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.384 -07 000000430 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:28:58.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.394 -07 000000606 INF: FPGA: Recv ZSGSRD 35842
17-03-18 02:28:58.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:28:58.404 -07 000000626 INF: FPGA: Recv ZSGSRD 35847
17-03-18 02:28:58.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:28:58.414 -07 000000501 INF: FPGA: Recv ZPIEZORD 31696
17-03-18 02:28:58.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:28:58.424 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.1 V.
17-03-18 02:28:58.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35842 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35842 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35835 (-169.7 uncal um), Max = 35848 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:28:58.424 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35842, posNoise = 6, negNoise = 7
17-03-18 02:28:58.424 -07 000000610 INF: Z Motor: After move to -0.170579, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:28:58.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:28:58.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:28:58.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:28:58.424 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:28:58.424 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:28:58.424 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:28:58.424 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:28:58.424 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:28:58.424 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:28:58.424 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:28:58.424 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:28:58.424 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:28:58.424 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:28:58.424 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:28:58.424 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:28:58.424 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:28:58.424 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:28:58.434 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:28:58.434 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:28:58.444 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:28:58.444 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:28:58.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37439 150\n [Camera]
17-03-18 02:28:58.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:28:59.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:28:59.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:28:59.034 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:28:59.044 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:28:59.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:28:59.044 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:28:59.044 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:28:59.044 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1135111552, 0x0, 391868352) start.
17-03-18 02:28:59.054 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:28:59.054 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:28:59.234 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37439 780
17-03-18 02:28:59.384 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:28:59.424 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:28:59.424 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:28:59.424 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:59.424 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1135111552, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:28:59.424 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:28:59.424 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:59.424 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:28:59.434 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:28:59.434 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:28:59.434 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:28:59.574 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:28:59.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:28:59.574 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:28:59.574 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:28:59.574 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:28:59.574 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:28:59.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:28:59.574 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:28:59.574 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:28:59.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:28:59.764 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:28:59.764 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:28:59.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37439 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:28:59.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:28:59.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170579963596131. ------
17-03-18 02:28:59.764 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:28:59.764 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17711 mm
17-03-18 02:28:59.774 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:28:59.774 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:28:59.774 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:28:59.774 -07 000000444 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:28:59.774 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38691, sync = True, waitForSettling = False)
17-03-18 02:28:59.774 -07 000000462 INF: Z Motor: Moving to -0.177116 mm, started at -0.170580 mm, distance = -6.54 um
17-03-18 02:28:59.784 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:28:59.784 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:28:59.784 -07 000000591 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:28:59.794 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:28:59.794 -07 000000444 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:28:59.794 -07 000000444 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:28:59.794 -07 000000444 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:28:59.794 -07 000000462 INF: FPGA: Xmit ZDACW 38691\n [Z Motor]
17-03-18 02:28:59.794 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:28:59.804 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:28:59.804 -07 000000462 INF: FPGA: 'ZDACW 38691' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:28:59.814 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:28:59.824 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:28:59.824 -07 000000618 INF: FPGA: Recv ZDACR 38691
17-03-18 02:28:59.834 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:28:59.834 -07 000000462 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 02:28:59.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:28:59.964 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:28:59.964 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:59.964 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:28:59.964 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:28:59.964 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:28:59.964 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:28:59.974 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:28:59.974 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:28:59.974 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:29:00.004 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:00.004 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:29:00.184 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:29:00.184 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 02:29:00.234 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:00.234 -07 000000462 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:29:00.244 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:00.244 -07 000000444 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:00.244 -07 000000444 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:29:00.244 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-18 02:29:01.194 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:01.194 -07 000000606 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:29:01.204 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:01.204 -07 000000444 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:01.224 -07 000000444 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:01.224 -07 000000444 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:01.224 -07 000000444 INF: Y Motor: Moved to 63.2241 after 1455 ms (table move)
17-03-18 02:29:01.234 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177116 mm (DAC = 38691)
17-03-18 02:29:01.234 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.234 -07 000000467 INF: FPGA: Recv ZSGSRD 36860
17-03-18 02:29:01.244 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:29:01.244 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.244 -07 000000569 INF: FPGA: Recv ZSGSRD 36861
17-03-18 02:29:01.254 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.254 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.254 -07 000000502 INF: FPGA: Recv ZSGSRD 36860
17-03-18 02:29:01.264 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.264 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.264 -07 000000455 INF: FPGA: Recv ZSGSRD 36863
17-03-18 02:29:01.274 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.274 -07 000000444 INF: FPGA: Recv ZSGSRD 36859
17-03-18 02:29:01.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.284 -07 000000467 INF: FPGA: Recv ZSGSRD 36866
17-03-18 02:29:01.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.294 -07 000000430 INF: FPGA: Recv ZSGSRD 36861
17-03-18 02:29:01.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.304 -07 000000502 INF: FPGA: Recv ZSGSRD 36855
17-03-18 02:29:01.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.314 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.314 -07 000000629 INF: FPGA: Recv ZSGSRD 36859
17-03-18 02:29:01.324 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.324 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:01.324 -07 000000444 INF: FPGA: Recv ZSGSRD 36867
17-03-18 02:29:01.334 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.334 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:01.334 -07 000000618 INF: FPGA: Recv ZPIEZORD 33079
17-03-18 02:29:01.344 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:01.344 -07 000000512 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.4 V.
17-03-18 02:29:01.344 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36861 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36860 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36855 (-176.2 uncal um), Max = 36867 (-176.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:29:01.344 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36861, posNoise = 6, negNoise = 6
17-03-18 02:29:01.344 -07 000000512 INF: Z Motor: After move to -0.177116, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:01.344 -07 000000512 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 02:29:01.344 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:01.394 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:29:01.394 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:01.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:01.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:01.394 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:01.394 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:01.394 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:01.394 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:01.394 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:01.394 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:01.404 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:01.404 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:01.404 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:29:01.404 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:29:01.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:01.474 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:01.484 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:01.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:01.774 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:01.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:01.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:01.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1170533816, 0x0, 559484976) start.
17-03-18 02:29:01.814 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:01.814 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:01.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 403 ms overall
17-03-18 02:29:01.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1170533816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:29:01.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:01.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:01.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:29:01.914 -07 000000591 INF: Autofocus start
17-03-18 02:29:01.914 -07 000000591 INF: MeasureProfile start
17-03-18 02:29:01.914 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:01.914 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:01.924 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:01.924 -07 000000591 INF: MeasureProfile done
17-03-18 02:29:01.924 -07 000000591 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:29:01.924 -07 000000591 INF: Autofocus finished
17-03-18 02:29:01.934 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:02.134 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:02.134 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 02:29:02.134 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177126235768586. ----------
17-03-18 02:29:02.134 -07 000000610 INF: Cycle	100	Tile	5	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:02.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37223, sync = True, waitForSettling = True)
17-03-18 02:29:02.144 -07 000000610 INF: Z Motor: Moving to -0.170396 mm, started at -0.177126 mm, distance = 6.73 um
17-03-18 02:29:02.144 -07 000000610 INF: FPGA: Xmit ZDACW 37223\n [Z Motor]
17-03-18 02:29:02.144 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:29:02.154 -07 000000610 INF: FPGA: 'ZDACW 37223' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:02.154 -07 000000502 INF: FPGA: Recv ZDACR 37223
17-03-18 02:29:02.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:02.244 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.031682,
17-03-18 02:29:02.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.314 -07 000000590 INF: FPGA: Recv ZSGSRD 35811
17-03-18 02:29:02.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:02.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.324 -07 000000576 INF: FPGA: Recv ZSGSRD 35812
17-03-18 02:29:02.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.334 -07 000000626 INF: FPGA: Recv ZSGSRD 35815
17-03-18 02:29:02.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.344 -07 000000430 INF: FPGA: Recv ZSGSRD 35816
17-03-18 02:29:02.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.354 -07 000000455 INF: FPGA: Recv ZSGSRD 35812
17-03-18 02:29:02.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.364 -07 000000424 INF: FPGA: Recv ZSGSRD 35811
17-03-18 02:29:02.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.374 -07 000000502 INF: FPGA: Recv ZSGSRD 35818
17-03-18 02:29:02.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.384 -07 000000467 INF: FPGA: Recv ZSGSRD 35812
17-03-18 02:29:02.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.394 -07 000000618 INF: FPGA: Recv ZSGSRD 35812
17-03-18 02:29:02.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:02.404 -07 000000461 INF: FPGA: Recv ZSGSRD 35816
17-03-18 02:29:02.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:02.414 -07 000000424 INF: FPGA: Recv ZPIEZORD 31634
17-03-18 02:29:02.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:02.424 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.680 V. Piezo Error = -9.2 V.
17-03-18 02:29:02.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35814 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35812 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35811 (-169.5 uncal um), Max = 35818 (-169.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:29:02.424 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35814, posNoise = 4, negNoise = 3
17-03-18 02:29:02.424 -07 000000610 INF: Z Motor: After move to -0.170396, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:02.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:29:02.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:02.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:02.424 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:02.424 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:02.424 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:02.424 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:02.424 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:02.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:02.424 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:02.424 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:02.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:02.424 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:02.424 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:02.424 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:02.434 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:29:02.434 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:02.444 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:29:02.444 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:29:02.444 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:29:02.444 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:29:02.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37400 150\n [Camera]
17-03-18 02:29:02.644 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:03.044 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:03.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:03.044 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:03.044 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:03.044 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:29:03.054 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:03.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:03.054 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:03.174 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:03.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:29:03.234 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37400 780
17-03-18 02:29:03.384 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:03.444 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:29:03.444 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:29:03.444 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:03.444 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:03.444 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:29:03.564 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:29:03.564 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:29:03.564 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:03.574 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:03.574 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 02:29:03.574 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:03.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:03.574 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:03.584 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:03.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:03.584 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:03.584 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:03.584 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:29:03.584 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:03.584 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:29:03.764 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:29:03.774 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:03.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37400 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-18 02:29:03.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:03.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170400085656162. ------
17-03-18 02:29:03.774 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:03.774 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17652 mm
17-03-18 02:29:03.774 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:03.784 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:29:03.784 -07 000000424 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:29:03.784 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:03.784 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38562, sync = True, waitForSettling = False)
17-03-18 02:29:03.784 -07 000000591 INF: Z Motor: Moving to -0.176526 mm, started at -0.170400 mm, distance = -6.13 um
17-03-18 02:29:03.784 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:03.784 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 02:29:03.784 -07 000000618 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:29:03.794 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:03.794 -07 000000424 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:03.794 -07 000000591 INF: FPGA: Xmit ZDACW 38562\n [Z Motor]
17-03-18 02:29:03.794 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:29:03.794 -07 000000424 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:03.794 -07 000000424 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:29:03.804 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:03.804 -07 000000591 INF: FPGA: 'ZDACW 38562' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:29:03.814 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:03.824 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:03.824 -07 000000430 INF: FPGA: Recv ZDACR 38562
17-03-18 02:29:03.834 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:03.834 -07 000000591 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:29:03.974 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:29:03.974 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:29:03.974 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:03.974 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:29:03.974 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:29:03.974 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:03.984 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:03.984 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:03.984 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:29:03.984 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:29:04.004 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:04.004 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:29:04.184 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:29:04.184 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:29:04.234 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:04.234 -07 000000512 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:29:04.244 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:04.244 -07 000000424 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:04.244 -07 000000424 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 02:29:04.244 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-18 02:29:05.194 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:05.194 -07 000000626 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:29:05.204 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:05.204 -07 000000424 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:05.224 -07 000000424 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:05.224 -07 000000424 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:29:05.224 -07 000000424 INF: Y Motor: Moved to 64.0571 after 1444 ms (table move)
17-03-18 02:29:05.224 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176526 mm (DAC = 38562)
17-03-18 02:29:05.224 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.234 -07 000000512 INF: FPGA: Recv ZSGSRD 36781
17-03-18 02:29:05.234 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:29:05.234 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.234 -07 000000618 INF: FPGA: Recv ZSGSRD 36770
17-03-18 02:29:05.244 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.244 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.244 -07 000000579 INF: FPGA: Recv ZSGSRD 36769
17-03-18 02:29:05.254 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.254 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.254 -07 000000590 INF: FPGA: Recv ZSGSRD 36772
17-03-18 02:29:05.264 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.264 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.264 -07 000000424 INF: FPGA: Recv ZSGSRD 36768
17-03-18 02:29:05.274 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.274 -07 000000444 INF: FPGA: Recv ZSGSRD 36768
17-03-18 02:29:05.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.284 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.284 -07 000000430 INF: FPGA: Recv ZSGSRD 36762
17-03-18 02:29:05.294 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.294 -07 000000579 INF: FPGA: Recv ZSGSRD 36773
17-03-18 02:29:05.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.304 -07 000000629 INF: FPGA: Recv ZSGSRD 36768
17-03-18 02:29:05.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.314 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:05.314 -07 000000501 INF: FPGA: Recv ZSGSRD 36766
17-03-18 02:29:05.324 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.324 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:05.324 -07 000000444 INF: FPGA: Recv ZPIEZORD 32944
17-03-18 02:29:05.334 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:05.334 -07 000000569 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.884 V. Piezo Error = -8.5 V.
17-03-18 02:29:05.334 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36770 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36768 (-175.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36762 (-175.6 uncal um), Max = 36781 (-175.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:29:05.334 -07 000000569 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36770, posNoise = 11, negNoise = 8
17-03-18 02:29:05.334 -07 000000569 INF: Z Motor: After move to -0.176526, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:05.334 -07 000000569 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-18 02:29:05.334 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:05.384 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 02:29:05.384 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:05.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:05.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:05.384 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:05.384 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:05.384 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:05.384 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:05.384 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:05.384 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:05.394 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:05.394 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:05.404 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:29:05.404 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:29:05.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:05.454 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:05.754 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:05.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:05.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:05.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1168327496, 0x0, 559484976) start.
17-03-18 02:29:05.784 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:05.794 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:05.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:29:05.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1168327496, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:29:05.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:05.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:29:05.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:29:05.894 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:05.894 -07 000000618 INF: Autofocus start
17-03-18 02:29:05.894 -07 000000618 INF: MeasureProfile start
17-03-18 02:29:05.894 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:05.904 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:05.904 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:05.914 -07 000000618 INF: MeasureProfile done
17-03-18 02:29:05.914 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:29:05.914 -07 000000618 INF: Autofocus finished
17-03-18 02:29:06.104 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:06.104 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:29:06.104 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176541632463685. ----------
17-03-18 02:29:06.104 -07 000000610 INF: Cycle	100	Tile	6	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:06.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37059, sync = True, waitForSettling = True)
17-03-18 02:29:06.114 -07 000000610 INF: Z Motor: Moving to -0.169645 mm, started at -0.176542 mm, distance = 6.90 um
17-03-18 02:29:06.114 -07 000000610 INF: FPGA: Xmit ZDACW 37059\n [Z Motor]
17-03-18 02:29:06.114 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:29:06.124 -07 000000610 INF: FPGA: 'ZDACW 37059' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:06.124 -07 000000455 INF: FPGA: Recv ZDACR 37059
17-03-18 02:29:06.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:06.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.284 -07 000000626 INF: FPGA: Recv ZSGSRD 35693
17-03-18 02:29:06.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:06.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.294 -07 000000430 INF: FPGA: Recv ZSGSRD 35699
17-03-18 02:29:06.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.304 -07 000000569 INF: FPGA: Recv ZSGSRD 35700
17-03-18 02:29:06.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.314 -07 000000502 INF: FPGA: Recv ZSGSRD 35698
17-03-18 02:29:06.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.324 -07 000000561 INF: FPGA: Recv ZSGSRD 35695
17-03-18 02:29:06.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.334 -07 000000591 INF: FPGA: Recv ZSGSRD 35697
17-03-18 02:29:06.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.344 -07 000000444 INF: FPGA: Recv ZSGSRD 35699
17-03-18 02:29:06.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.354 -07 000000455 INF: FPGA: Recv ZSGSRD 35695
17-03-18 02:29:06.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.364 -07 000000502 INF: FPGA: Recv ZSGSRD 35694
17-03-18 02:29:06.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:06.374 -07 000000424 INF: FPGA: Recv ZSGSRD 35706
17-03-18 02:29:06.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:06.384 -07 000000606 INF: FPGA: Recv ZPIEZORD 31528
17-03-18 02:29:06.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:06.394 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -9.2 V.
17-03-18 02:29:06.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35698 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35698 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35693 (-168.7 uncal um), Max = 35706 (-168.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:29:06.394 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35698, posNoise = 8, negNoise = 5
17-03-18 02:29:06.394 -07 000000610 INF: Z Motor: After move to -0.169645, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:06.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:29:06.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:06.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:06.394 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:06.394 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:06.394 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:06.394 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:06.394 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:06.394 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:06.394 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:06.394 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:06.394 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:06.394 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:06.394 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:06.394 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:06.394 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:29:06.404 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:06.404 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:29:06.404 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:06.404 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:29:06.414 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:29:06.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37235 150\n [Camera]
17-03-18 02:29:06.484 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:06.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:06.614 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:07.004 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:07.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:07.004 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:07.004 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:07.004 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:29:07.014 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:07.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:07.014 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:07.144 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:07.144 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:29:07.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37235 780
17-03-18 02:29:07.354 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:07.394 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:29:07.394 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:29:07.394 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:07.394 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:07.394 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:29:07.514 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:29:07.514 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:29:07.514 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:07.514 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:29:07.524 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 02:29:07.544 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:07.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:07.544 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:07.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:07.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:07.544 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:07.544 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:07.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:29:07.544 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:07.544 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:29:07.604 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.026244,
17-03-18 02:29:07.734 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:29:07.734 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:07.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37235 150' command took 2 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-18 02:29:07.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:07.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169654877047718. ------
17-03-18 02:29:07.744 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:07.744 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17600 mm
17-03-18 02:29:07.744 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:07.744 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:07.744 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38447, sync = True, waitForSettling = False)
17-03-18 02:29:07.744 -07 000000626 INF: Z Motor: Moving to -0.175999 mm, started at -0.169655 mm, distance = -6.34 um
17-03-18 02:29:07.744 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:29:07.744 -07 000000569 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:29:07.754 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:07.754 -07 000000626 INF: FPGA: Xmit ZDACW 38447\n [Z Motor]
17-03-18 02:29:07.754 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:29:07.764 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:07.764 -07 000000626 INF: FPGA: 'ZDACW 38447' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:29:07.764 -07 000000444 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:29:07.774 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:07.774 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:29:07.774 -07 000000569 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:07.774 -07 000000569 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:07.774 -07 000000569 INF: Y Motor: Moving 1337 steps-12
17-03-18 02:29:07.784 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:07.784 -07 000000512 INF: FPGA: Recv ZDACR 38447
17-03-18 02:29:07.794 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:07.794 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:07.794 -07 000000626 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:29:07.944 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:29:07.944 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:29:07.944 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:07.944 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:29:07.944 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:29:07.944 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:07.944 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:07.954 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:29:07.954 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:29:07.954 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:29:07.974 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:07.974 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 02:29:08.164 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:29:08.164 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:29:08.214 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:08.214 -07 000000430 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:29:08.224 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:08.224 -07 000000569 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:08.224 -07 000000569 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:29:08.224 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 02:29:09.174 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:09.174 -07 000000591 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:29:09.184 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:09.184 -07 000000569 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:09.204 -07 000000569 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:09.204 -07 000000569 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:09.204 -07 000000569 INF: Y Motor: Moved to 64.8789 after 1462 ms (table move)
17-03-18 02:29:09.214 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175999 mm (DAC = 38447)
17-03-18 02:29:09.214 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.214 -07 000000579 INF: FPGA: Recv ZSGSRD 36680
17-03-18 02:29:09.224 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:09.224 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.224 -07 000000590 INF: FPGA: Recv ZSGSRD 36678
17-03-18 02:29:09.234 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.234 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.234 -07 000000576 INF: FPGA: Recv ZSGSRD 36692
17-03-18 02:29:09.244 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.244 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.244 -07 000000462 INF: FPGA: Recv ZSGSRD 36690
17-03-18 02:29:09.254 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.254 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.254 -07 000000569 INF: FPGA: Recv ZSGSRD 36693
17-03-18 02:29:09.264 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.264 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.264 -07 000000579 INF: FPGA: Recv ZSGSRD 36686
17-03-18 02:29:09.274 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.274 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.274 -07 000000455 INF: FPGA: Recv ZSGSRD 36680
17-03-18 02:29:09.284 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.284 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.284 -07 000000561 INF: FPGA: Recv ZSGSRD 36683
17-03-18 02:29:09.294 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.294 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.294 -07 000000606 INF: FPGA: Recv ZSGSRD 36683
17-03-18 02:29:09.304 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.304 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:09.304 -07 000000590 INF: FPGA: Recv ZSGSRD 36685
17-03-18 02:29:09.314 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.314 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:09.314 -07 000000444 INF: FPGA: Recv ZPIEZORD 32849
17-03-18 02:29:09.324 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:09.324 -07 000000502 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.867 V. Piezo Error = -8.5 V.
17-03-18 02:29:09.324 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36685 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36684 (-175.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36678 (-175.1 uncal um), Max = 36693 (-175.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:29:09.324 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36685, posNoise = 8, negNoise = 7
17-03-18 02:29:09.324 -07 000000502 INF: Z Motor: After move to -0.175999, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:09.324 -07 000000502 INF: Z Motor: Settle wait time = 1466 ms, measure time = 109 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:29:09.324 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:09.374 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 02:29:09.374 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:09.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:09.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:09.374 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:09.374 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:09.374 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:09.374 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:09.384 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:09.384 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:09.384 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:09.384 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:09.394 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:29:09.394 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:29:09.394 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:09.444 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:09.744 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:09.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:09.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:09.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1116030168, 0x0, 559484976) start.
17-03-18 02:29:09.774 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:09.784 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:09.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 02:29:09.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1116030168, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:29:09.854 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:09.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:29:09.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:29:09.884 -07 000000591 INF: Autofocus start
17-03-18 02:29:09.884 -07 000000591 INF: MeasureProfile start
17-03-18 02:29:09.884 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:09.884 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:09.894 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:09.894 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:09.894 -07 000000591 INF: MeasureProfile done
17-03-18 02:29:09.894 -07 000000591 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:29:09.894 -07 000000591 INF: Autofocus finished
17-03-18 02:29:10.094 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:10.094 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:29:10.094 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.175995574431636. ----------
17-03-18 02:29:10.094 -07 000000610 INF: Cycle	100	Tile	7	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:10.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36997, sync = True, waitForSettling = True)
17-03-18 02:29:10.104 -07 000000610 INF: Z Motor: Moving to -0.169361 mm, started at -0.175996 mm, distance = 6.63 um
17-03-18 02:29:10.104 -07 000000610 INF: FPGA: Xmit ZDACW 36997\n [Z Motor]
17-03-18 02:29:10.104 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:29:10.114 -07 000000610 INF: FPGA: 'ZDACW 36997' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:10.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:10.114 -07 000000424 INF: FPGA: Recv ZDACR 36997
17-03-18 02:29:10.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:10.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.274 -07 000000455 INF: FPGA: Recv ZSGSRD 35654
17-03-18 02:29:10.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:10.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.284 -07 000000606 INF: FPGA: Recv ZSGSRD 35657
17-03-18 02:29:10.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.294 -07 000000467 INF: FPGA: Recv ZSGSRD 35650
17-03-18 02:29:10.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.304 -07 000000579 INF: FPGA: Recv ZSGSRD 35651
17-03-18 02:29:10.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.314 -07 000000430 INF: FPGA: Recv ZSGSRD 35652
17-03-18 02:29:10.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.324 -07 000000455 INF: FPGA: Recv ZSGSRD 35657
17-03-18 02:29:10.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.334 -07 000000462 INF: FPGA: Recv ZSGSRD 35655
17-03-18 02:29:10.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:10.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.344 -07 000000461 INF: FPGA: Recv ZSGSRD 35655
17-03-18 02:29:10.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.354 -07 000000569 INF: FPGA: Recv ZSGSRD 35651
17-03-18 02:29:10.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:10.364 -07 000000629 INF: FPGA: Recv ZSGSRD 35650
17-03-18 02:29:10.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:10.374 -07 000000467 INF: FPGA: Recv ZPIEZORD 31474
17-03-18 02:29:10.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:10.384 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.645 V. Piezo Error = -9.2 V.
17-03-18 02:29:10.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35653 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35653 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35650 (-168.5 uncal um), Max = 35657 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:29:10.384 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35653, posNoise = 4, negNoise = 3
17-03-18 02:29:10.384 -07 000000610 INF: Z Motor: After move to -0.169361, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:10.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:29:10.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:10.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:10.384 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:10.384 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:10.384 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:10.384 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:10.384 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:10.384 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:10.384 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:10.384 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:10.384 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:10.384 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:10.394 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:10.394 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:10.394 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:29:10.394 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:10.404 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:29:10.404 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:29:10.404 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:29:10.404 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:29:10.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37174 150\n [Camera]
17-03-18 02:29:10.604 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:11.004 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:11.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:11.004 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:11.004 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:11.004 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1135111552, 0x0, 391868352) start.
17-03-18 02:29:11.004 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:11.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:11.004 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:11.004 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:11.004 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1170533816, 0x0, 418435064) start.
17-03-18 02:29:11.194 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37174 780
17-03-18 02:29:11.344 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:11.384 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1135111552, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:29:11.384 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:29:11.384 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:11.384 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1170533816, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:29:11.384 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:29:11.384 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:11.384 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:11.384 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:29:11.394 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:11.394 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:29:11.484 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:11.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:11.534 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:11.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:11.534 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:11.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:11.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:11.654 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:11.654 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:11.654 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:29:11.654 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:11.654 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:29:11.724 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:29:11.724 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:11.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37174 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-18 02:29:11.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:11.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169365787501338. ------
17-03-18 02:29:11.724 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:11.724 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17593 mm
17-03-18 02:29:11.724 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:11.734 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:11.734 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:29:11.734 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:11.734 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:29:11.734 -07 000000569 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:29:11.734 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38432, sync = True, waitForSettling = False)
17-03-18 02:29:11.734 -07 000000467 INF: Z Motor: Moving to -0.175930 mm, started at -0.169366 mm, distance = -6.56 um
17-03-18 02:29:11.744 -07 000000467 INF: FPGA: Xmit ZDACW 38432\n [Z Motor]
17-03-18 02:29:11.744 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:29:11.754 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:11.754 -07 000000467 INF: FPGA: 'ZDACW 38432' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:29:11.754 -07 000000462 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:29:11.764 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:29:11.764 -07 000000569 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:11.764 -07 000000569 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:11.764 -07 000000569 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:29:11.764 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:11.764 -07 000000444 INF: FPGA: Recv ZDACR 38432
17-03-18 02:29:11.774 -07 000000467 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:11.774 -07 000000467 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:29:11.774 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:11.934 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:11.934 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:29:12.034 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:29:12.034 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:29:12.034 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:12.044 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:12.044 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:29:12.044 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:29:12.044 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:12.044 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:29:12.044 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:12.044 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 02:29:12.144 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:29:12.144 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 386 ms overall
17-03-18 02:29:12.194 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:12.204 -07 000000430 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:29:12.204 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:29:12.204 -07 000000569 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:12.204 -07 000000569 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:29:12.204 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.186 mm/sec
17-03-18 02:29:12.964 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.012614,
17-03-18 02:29:13.154 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:13.154 -07 000000444 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:29:13.164 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:13.164 -07 000000569 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:13.194 -07 000000569 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:13.194 -07 000000569 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:13.194 -07 000000569 INF: Y Motor: Moved to 65.7139 after 1457 ms (table move)
17-03-18 02:29:13.194 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175930 mm (DAC = 38432)
17-03-18 02:29:13.194 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.194 -07 000000512 INF: FPGA: Recv ZSGSRD 36679
17-03-18 02:29:13.204 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:29:13.204 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.204 -07 000000629 INF: FPGA: Recv ZSGSRD 36672
17-03-18 02:29:13.214 -07 000000606 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.214 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.214 -07 000000444 INF: FPGA: Recv ZSGSRD 36677
17-03-18 02:29:13.224 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.224 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.224 -07 000000561 INF: FPGA: Recv ZSGSRD 36673
17-03-18 02:29:13.234 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.234 -07 000000590 INF: FPGA: Recv ZSGSRD 36675
17-03-18 02:29:13.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.244 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.244 -07 000000569 INF: FPGA: Recv ZSGSRD 36674
17-03-18 02:29:13.254 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.254 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.254 -07 000000618 INF: FPGA: Recv ZSGSRD 36672
17-03-18 02:29:13.264 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.264 -07 000000591 INF: FPGA: Recv ZSGSRD 36675
17-03-18 02:29:13.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.274 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.274 -07 000000461 INF: FPGA: Recv ZSGSRD 36674
17-03-18 02:29:13.284 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:13.284 -07 000000424 INF: FPGA: Recv ZSGSRD 36672
17-03-18 02:29:13.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.294 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:13.294 -07 000000569 INF: FPGA: Recv ZPIEZORD 32840
17-03-18 02:29:13.304 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:13.304 -07 000000606 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.5 V.
17-03-18 02:29:13.304 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36674 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36674 (-175.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36672 (-175.0 uncal um), Max = 36679 (-175.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:29:13.304 -07 000000606 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36674, posNoise = 5, negNoise = 2
17-03-18 02:29:13.304 -07 000000606 INF: Z Motor: After move to -0.175930, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:13.304 -07 000000606 INF: Z Motor: Settle wait time = 1461 ms, measure time = 105 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:29:13.304 -07 000000606 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:13.354 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:29:13.354 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:13.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:13.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:13.354 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:13.354 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:13.354 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:13.354 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:13.354 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:13.354 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:13.364 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:13.364 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:13.374 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:29:13.374 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:29:13.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:13.414 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:13.714 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:13.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:13.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:13.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 02:29:13.754 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:13.754 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:13.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:29:13.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:29:13.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:13.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:13.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:29:13.854 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:13.854 -07 000000579 INF: Autofocus start
17-03-18 02:29:13.854 -07 000000579 INF: MeasureProfile start
17-03-18 02:29:13.854 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:13.864 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:29:13.864 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:13.864 -07 000000579 INF: MeasureProfile done
17-03-18 02:29:13.864 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:29:13.864 -07 000000579 INF: Autofocus finished
17-03-18 02:29:14.064 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:14.064 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:29:14.064 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.175924908098076. ----------
17-03-18 02:29:14.064 -07 000000610 INF: Cycle	100	Tile	8	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:14.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36929, sync = True, waitForSettling = True)
17-03-18 02:29:14.074 -07 000000610 INF: Z Motor: Moving to -0.169050 mm, started at -0.175925 mm, distance = 6.87 um
17-03-18 02:29:14.074 -07 000000610 INF: FPGA: Xmit ZDACW 36929\n [Z Motor]
17-03-18 02:29:14.074 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:29:14.084 -07 000000610 INF: FPGA: 'ZDACW 36929' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:14.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:14.084 -07 000000424 INF: FPGA: Recv ZDACR 36929
17-03-18 02:29:14.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:14.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.244 -07 000000462 INF: FPGA: Recv ZSGSRD 35605
17-03-18 02:29:14.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.254 -07 000000561 INF: FPGA: Recv ZSGSRD 35607
17-03-18 02:29:14.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.264 -07 000000462 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:29:14.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.274 -07 000000561 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:29:14.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.284 -07 000000618 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:29:14.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.294 -07 000000461 INF: FPGA: Recv ZSGSRD 35609
17-03-18 02:29:14.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.304 -07 000000467 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:29:14.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.314 -07 000000512 INF: FPGA: Recv ZSGSRD 35603
17-03-18 02:29:14.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.324 -07 000000629 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:29:14.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:14.334 -07 000000569 INF: FPGA: Recv ZSGSRD 35610
17-03-18 02:29:14.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:14.344 -07 000000561 INF: FPGA: Recv ZPIEZORD 31443
17-03-18 02:29:14.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:14.354 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.2 V.
17-03-18 02:29:14.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35606 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35606 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35602 (-168.2 uncal um), Max = 35610 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:29:14.354 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35606, posNoise = 4, negNoise = 4
17-03-18 02:29:14.354 -07 000000610 INF: Z Motor: After move to -0.169050, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:14.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 02:29:14.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:14.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:14.364 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:14.364 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:14.364 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:14.364 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:14.364 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:14.364 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:14.364 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:14.364 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:14.364 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:29:14.364 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:14.374 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:14.374 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:14.374 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:29:14.374 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:14.384 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:29:14.384 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:29:14.384 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:29:14.384 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:29:14.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37106 150\n [Camera]
17-03-18 02:29:14.584 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 02:29:14.974 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:14.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:14.984 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:14.984 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:14.984 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:29:14.984 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:14.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:14.984 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:14.984 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:14.984 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130706248, 0x0, 418435064) start.
17-03-18 02:29:15.174 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37106 780
17-03-18 02:29:15.324 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:15.364 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:29:15.364 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:29:15.364 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:15.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130706248, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:29:15.364 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:29:15.364 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:15.364 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:15.364 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:29:15.364 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:29:15.374 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:29:15.514 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:15.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:15.514 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:15.624 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:15.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:15.624 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:15.624 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:15.624 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1166128512, 0x0, 391868352) start.
17-03-18 02:29:15.634 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:15.634 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:29:15.704 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:29:15.704 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:15.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37106 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:29:15.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:15.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169063849530676. ------
17-03-18 02:29:15.704 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:15.704 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17552 mm
17-03-18 02:29:15.704 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:15.714 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:29:15.714 -07 000000512 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-18 02:29:15.714 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38341, sync = True, waitForSettling = False)
17-03-18 02:29:15.714 -07 000000444 INF: Z Motor: Moving to -0.175514 mm, started at -0.169064 mm, distance = -6.45 um
17-03-18 02:29:15.714 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:15.714 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 02:29:15.714 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:15.714 -07 000000501 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:29:15.724 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:15.724 -07 000000512 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:15.724 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:15.724 -07 000000512 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:15.724 -07 000000512 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:29:15.734 -07 000000444 INF: FPGA: Xmit ZDACW 38341\n [Z Motor]
17-03-18 02:29:15.734 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:29:15.744 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:15.744 -07 000000444 INF: FPGA: 'ZDACW 38341' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:29:15.754 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:15.754 -07 000000424 INF: FPGA: Recv ZDACR 38341
17-03-18 02:29:15.764 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:15.764 -07 000000444 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:29:15.924 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:15.924 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-18 02:29:16.024 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:29:16.024 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:29:16.024 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:16.024 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1166128512, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:29:16.024 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:29:16.024 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:16.024 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:16.024 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:16.024 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 02:29:16.034 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:29:16.114 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:29:16.114 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:29:16.164 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:16.164 -07 000000424 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:29:16.174 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:16.174 -07 000000512 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:16.174 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:29:16.174 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.145 mm/sec
17-03-18 02:29:16.484 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:16.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:17.124 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:17.124 -07 000000629 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:29:17.134 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:17.134 -07 000000512 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:17.154 -07 000000512 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:17.154 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:17.154 -07 000000512 INF: Y Motor: Moved to 66.5391 after 1448 ms (table move)
17-03-18 02:29:17.164 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175514 mm (DAC = 38341)
17-03-18 02:29:17.164 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.164 -07 000000461 INF: FPGA: Recv ZSGSRD 36616
17-03-18 02:29:17.174 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:17.184 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.184 -07 000000606 INF: FPGA: Recv ZSGSRD 36603
17-03-18 02:29:17.194 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:17.194 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.194 -07 000000502 INF: FPGA: Recv ZSGSRD 36619
17-03-18 02:29:17.204 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:17.204 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.204 -07 000000561 INF: FPGA: Recv ZSGSRD 36614
17-03-18 02:29:17.214 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:17.214 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.214 -07 000000444 INF: FPGA: Recv ZSGSRD 36614
17-03-18 02:29:17.224 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:17.224 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.224 -07 000000618 INF: FPGA: Recv ZSGSRD 36604
17-03-18 02:29:17.234 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:17.234 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.234 -07 000000430 INF: FPGA: Recv ZSGSRD 36606
17-03-18 02:29:17.244 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:17.244 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.244 -07 000000579 INF: FPGA: Recv ZSGSRD 36612
17-03-18 02:29:17.254 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:17.254 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.254 -07 000000501 INF: FPGA: Recv ZSGSRD 36614
17-03-18 02:29:17.264 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:17.264 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:17.264 -07 000000461 INF: FPGA: Recv ZSGSRD 36616
17-03-18 02:29:17.274 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:17.274 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:17.274 -07 000000502 INF: FPGA: Recv ZPIEZORD 32747
17-03-18 02:29:17.284 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:17.284 -07 000000576 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.5 V.
17-03-18 02:29:17.284 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36612 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36614 (-174.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36603 (-174.6 uncal um), Max = 36619 (-174.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:29:17.284 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36612, posNoise = 7, negNoise = 9
17-03-18 02:29:17.284 -07 000000576 INF: Z Motor: After move to -0.175514, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:17.284 -07 000000576 INF: Z Motor: Settle wait time = 1451 ms, measure time = 118 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:29:17.284 -07 000000576 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:17.324 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:29:17.324 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:17.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:17.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:17.324 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:17.324 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:17.324 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:17.324 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:17.324 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:17.324 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:17.324 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:17.324 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:17.344 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:29:17.344 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:29:17.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:17.394 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:17.694 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:17.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:17.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:17.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1151452432, 0x0, 559484976) start.
17-03-18 02:29:17.734 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:17.734 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:17.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 02:29:17.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1151452432, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:29:17.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:17.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:17.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:29:17.934 -07 000000561 INF: Autofocus start
17-03-18 02:29:17.934 -07 000000561 INF: MeasureProfile start
17-03-18 02:29:17.934 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:17.934 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:17.944 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:17.944 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:17.944 -07 000000561 INF: MeasureProfile done
17-03-18 02:29:17.944 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:29:17.944 -07 000000561 INF: Autofocus finished
17-03-18 02:29:18.144 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:18.144 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:29:18.144 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.175526606945287. ----------
17-03-18 02:29:18.144 -07 000000610 INF: Cycle	100	Tile	9	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:18.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36874, sync = True, waitForSettling = True)
17-03-18 02:29:18.154 -07 000000610 INF: Z Motor: Moving to -0.168798 mm, started at -0.175527 mm, distance = 6.73 um
17-03-18 02:29:18.154 -07 000000610 INF: FPGA: Xmit ZDACW 36874\n [Z Motor]
17-03-18 02:29:18.154 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:29:18.164 -07 000000610 INF: FPGA: 'ZDACW 36874' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:18.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:18.164 -07 000000462 INF: FPGA: Recv ZDACR 36874
17-03-18 02:29:18.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:18.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:18.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.324 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.989471,
17-03-18 02:29:18.324 -07 000000569 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:29:18.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:18.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.334 -07 000000591 INF: FPGA: Recv ZSGSRD 35575
17-03-18 02:29:18.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:18.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.354 -07 000000512 INF: FPGA: Recv ZSGSRD 35564
17-03-18 02:29:18.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:18.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.384 -07 000000502 INF: FPGA: Recv ZSGSRD 35565
17-03-18 02:29:18.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:18.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.404 -07 000000462 INF: FPGA: Recv ZSGSRD 35566
17-03-18 02:29:18.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:18.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.414 -07 000000502 INF: FPGA: Recv ZSGSRD 35573
17-03-18 02:29:18.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:18.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.424 -07 000000606 INF: FPGA: Recv ZSGSRD 35560
17-03-18 02:29:18.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:18.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35568
17-03-18 02:29:18.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:18.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.444 -07 000000579 INF: FPGA: Recv ZSGSRD 35568
17-03-18 02:29:18.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:18.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:18.454 -07 000000462 INF: FPGA: Recv ZSGSRD 35571
17-03-18 02:29:18.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:18.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:18.464 -07 000000502 INF: FPGA: Recv ZPIEZORD 31383
17-03-18 02:29:18.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:18.474 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.2 V.
17-03-18 02:29:18.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35568 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35568 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35560 (-167.9 uncal um), Max = 35575 (-168.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:29:18.474 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35568, posNoise = 7, negNoise = 8
17-03-18 02:29:18.474 -07 000000610 INF: Z Motor: After move to -0.168798, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:18.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-18 02:29:18.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:18.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:18.474 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:18.474 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:18.474 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:18.474 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:18.474 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:18.474 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:18.474 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:18.474 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:18.474 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:18.474 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:18.484 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:29:18.484 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:18.484 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:18.484 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:18.494 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:29:18.494 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:18.494 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:29:18.494 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:29:18.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37051 150\n [Camera]
17-03-18 02:29:18.694 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:19.084 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:29:19.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:29:19.084 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:19.094 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:29:19.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:29:19.094 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:19.094 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:19.094 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:29:19.094 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:19.094 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:29:19.284 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37051 780
17-03-18 02:29:19.424 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:19.474 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:29:19.474 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:29:19.474 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:19.474 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:29:19.474 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:29:19.474 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:19.474 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:19.474 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:29:19.474 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:29:19.484 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:29:19.624 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:19.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:19.624 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:19.624 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:19.624 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:19.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:19.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) start.
17-03-18 02:29:19.624 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:19.624 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:19.624 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1474691344, 0x0, 418435064) start.
17-03-18 02:29:19.814 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:29:19.814 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:19.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37051 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-18 02:29:19.814 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:19.814 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.168819729469289. ------
17-03-18 02:29:19.814 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:19.814 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17569 mm
17-03-18 02:29:19.814 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:19.814 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:29:19.824 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38380, sync = True, waitForSettling = False)
17-03-18 02:29:19.824 -07 000000444 INF: Z Motor: Moving to -0.175692 mm, started at -0.168820 mm, distance = -6.87 um
17-03-18 02:29:19.824 -07 000000444 INF: FPGA: Xmit ZDACW 38380\n [Z Motor]
17-03-18 02:29:19.944 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:19.944 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 123 ms to get response, and 126 ms overall
17-03-18 02:29:19.944 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:29:19.944 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:29:19.954 -07 000000444 INF: FPGA: 'ZDACW 38380' command took 123 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 02:29:19.954 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:19.964 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:19.964 -07 000000618 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:29:19.974 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:19.974 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:29:19.974 -07 000000576 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:19.974 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:19.974 -07 000000576 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:29:19.974 -07 000000512 INF: FPGA: Recv ZDACR 38380
17-03-18 02:29:19.984 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:19.984 -07 000000444 INF: Z Motor: MoveAbsStepped took 159 ms (did NOT wait for settling yet))
17-03-18 02:29:19.984 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:20.024 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1474691344, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:29:20.024 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:29:20.024 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:20.024 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:29:20.024 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:29:20.024 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:20.034 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:29:20.034 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:29:20.034 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:29:20.034 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:29:20.154 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:20.154 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 02:29:20.364 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:29:20.364 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-18 02:29:20.404 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:20.414 -07 000000561 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:29:20.414 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:29:20.414 -07 000000576 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:20.414 -07 000000576 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 02:29:20.414 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.163 mm/sec
17-03-18 02:29:21.364 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:21.364 -07 000000444 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:29:21.374 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:21.374 -07 000000576 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:21.394 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:21.394 -07 000000576 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:21.394 -07 000000576 INF: Y Motor: Moved to 67.3716 after 1578 ms (table move)
17-03-18 02:29:21.404 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175692 mm (DAC = 38380)
17-03-18 02:29:21.404 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.404 -07 000000502 INF: FPGA: Recv ZSGSRD 36646
17-03-18 02:29:21.414 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:21.414 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.414 -07 000000444 INF: FPGA: Recv ZSGSRD 36632
17-03-18 02:29:21.424 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.424 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.424 -07 000000579 INF: FPGA: Recv ZSGSRD 36634
17-03-18 02:29:21.434 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.434 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.434 -07 000000501 INF: FPGA: Recv ZSGSRD 36639
17-03-18 02:29:21.444 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.444 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.444 -07 000000455 INF: FPGA: Recv ZSGSRD 36644
17-03-18 02:29:21.454 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.454 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.454 -07 000000512 INF: FPGA: Recv ZSGSRD 36646
17-03-18 02:29:21.464 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.464 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.464 -07 000000444 INF: FPGA: Recv ZSGSRD 36639
17-03-18 02:29:21.474 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.474 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.474 -07 000000569 INF: FPGA: Recv ZSGSRD 36640
17-03-18 02:29:21.484 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.484 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.484 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:21.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:21.484 -07 000000590 INF: FPGA: Recv ZSGSRD 36640
17-03-18 02:29:21.494 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.494 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:21.494 -07 000000501 INF: FPGA: Recv ZSGSRD 36636
17-03-18 02:29:21.504 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.504 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:21.504 -07 000000591 INF: FPGA: Recv ZPIEZORD 32817
17-03-18 02:29:21.514 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:21.514 -07 000000461 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.5 V.
17-03-18 02:29:21.514 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36640 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36640 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36632 (-174.8 uncal um), Max = 36646 (-174.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:29:21.514 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36640, posNoise = 6, negNoise = 8
17-03-18 02:29:21.514 -07 000000461 INF: Z Motor: After move to -0.175692, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:21.514 -07 000000461 INF: Z Motor: Settle wait time = 1580 ms, measure time = 110 ms (allowed 150 ms), total time = 1690 ms
17-03-18 02:29:21.514 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:21.554 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms
17-03-18 02:29:21.554 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:21.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:21.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:21.554 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:21.554 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:21.554 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:21.554 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:21.554 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:21.554 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:21.564 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:21.564 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:21.574 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:29:21.574 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:29:21.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:21.624 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:21.924 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:21.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:21.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:21.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:29:21.964 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:21.964 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:21.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:29:22.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:29:22.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:22.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:22.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:29:22.064 -07 000000561 INF: Autofocus start
17-03-18 02:29:22.064 -07 000000561 INF: MeasureProfile start
17-03-18 02:29:22.064 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:22.064 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:22.074 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:22.074 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:22.074 -07 000000561 INF: MeasureProfile done
17-03-18 02:29:22.074 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:29:22.074 -07 000000561 INF: Autofocus finished
17-03-18 02:29:22.274 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:22.274 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:29:22.274 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175706484885256. ----------
17-03-18 02:29:22.274 -07 000000610 INF: Cycle	100	Tile	10	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:22.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36877, sync = True, waitForSettling = True)
17-03-18 02:29:22.284 -07 000000610 INF: Z Motor: Moving to -0.168812 mm, started at -0.175706 mm, distance = 6.89 um
17-03-18 02:29:22.284 -07 000000610 INF: FPGA: Xmit ZDACW 36877\n [Z Motor]
17-03-18 02:29:22.284 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:29:22.294 -07 000000610 INF: FPGA: 'ZDACW 36877' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:22.294 -07 000000591 INF: FPGA: Recv ZDACR 36877
17-03-18 02:29:22.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:22.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.454 -07 000000462 INF: FPGA: Recv ZSGSRD 35566
17-03-18 02:29:22.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:22.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.464 -07 000000629 INF: FPGA: Recv ZSGSRD 35576
17-03-18 02:29:22.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.474 -07 000000579 INF: FPGA: Recv ZSGSRD 35563
17-03-18 02:29:22.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.484 -07 000000467 INF: FPGA: Recv ZSGSRD 35569
17-03-18 02:29:22.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.494 -07 000000561 INF: FPGA: Recv ZSGSRD 35575
17-03-18 02:29:22.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.504 -07 000000430 INF: FPGA: Recv ZSGSRD 35570
17-03-18 02:29:22.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.514 -07 000000501 INF: FPGA: Recv ZSGSRD 35573
17-03-18 02:29:22.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.524 -07 000000461 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:29:22.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.544 -07 000000626 INF: FPGA: Recv ZSGSRD 35568
17-03-18 02:29:22.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:22.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:22.554 -07 000000444 INF: FPGA: Recv ZSGSRD 35566
17-03-18 02:29:22.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:22.564 -07 000000606 INF: FPGA: Recv ZPIEZORD 31403
17-03-18 02:29:22.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:22.574 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.2 V.
17-03-18 02:29:22.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35569 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35568 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35563 (-167.9 uncal um), Max = 35576 (-168.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:29:22.574 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35569, posNoise = 7, negNoise = 6
17-03-18 02:29:22.574 -07 000000610 INF: Z Motor: After move to -0.168812, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:22.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:29:22.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:22.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:22.574 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:22.574 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:22.574 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:22.574 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:22.574 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:22.574 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:22.574 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:22.574 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:22.574 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:22.574 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:22.584 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:29:22.584 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:22.584 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 02:29:22.584 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:22.594 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:29:22.594 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:29:22.594 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:29:22.594 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:29:22.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 37053 150\n [Camera]
17-03-18 02:29:22.794 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:23.194 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:23.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:23.194 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:23.194 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:23.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:23.194 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:23.194 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:23.194 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:29:23.194 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:23.194 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:29:23.384 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37053 780
17-03-18 02:29:23.534 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:23.564 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:29:23.564 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:29:23.564 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:23.574 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:29:23.574 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:29:23.574 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:23.574 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:29:23.574 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:29:23.574 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:29:23.584 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:29:23.724 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.964938,
17-03-18 02:29:23.724 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:23.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:23.724 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:23.724 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:23.724 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:29:23.724 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:23.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:23.724 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:23.724 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:23.724 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) start.
17-03-18 02:29:23.914 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:29:23.914 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:23.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 37053 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-18 02:29:23.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:23.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.16882615368143. ------
17-03-18 02:29:23.924 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17518 mm
17-03-18 02:29:23.924 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:23.924 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:23.924 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:29:23.924 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38269, sync = True, waitForSettling = False)
17-03-18 02:29:23.924 -07 000000455 INF: Z Motor: Moving to -0.175184 mm, started at -0.168826 mm, distance = -6.36 um
17-03-18 02:29:23.924 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:29:23.924 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:23.934 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:23.934 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:23.934 -07 000000590 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:29:23.944 -07 000000455 INF: FPGA: Xmit ZDACW 38269\n [Z Motor]
17-03-18 02:29:23.944 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:29:23.944 -07 000000569 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:23.944 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:29:23.944 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:23.944 -07 000000569 INF: Y Motor: Moving 1345 steps-23
17-03-18 02:29:23.954 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:23.954 -07 000000455 INF: FPGA: 'ZDACW 38269' command took 2 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:29:23.964 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:23.974 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:23.974 -07 000000467 INF: FPGA: Recv ZDACR 38269
17-03-18 02:29:23.984 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:23.984 -07 000000455 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:29:24.114 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:29:24.114 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:29:24.114 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:24.114 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:29:24.114 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:29:24.114 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:24.114 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:24.124 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:29:24.124 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:29:24.124 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:29:24.154 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:24.154 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:29:24.334 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:29:24.334 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 02:29:24.384 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:24.384 -07 000000606 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:29:24.394 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:29:24.394 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:24.394 -07 000000569 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:29:24.394 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.841 mm, average velocity = 2.156 mm/sec
17-03-18 02:29:25.344 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:25.344 -07 000000618 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:29:25.354 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:25.354 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:25.374 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:25.374 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:25.374 -07 000000569 INF: Y Motor: Moved to 68.2051 after 1452 ms (table move)
17-03-18 02:29:25.384 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175184 mm (DAC = 38269)
17-03-18 02:29:25.384 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.384 -07 000000424 INF: FPGA: Recv ZSGSRD 36563
17-03-18 02:29:25.394 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:25.394 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.394 -07 000000561 INF: FPGA: Recv ZSGSRD 36559
17-03-18 02:29:25.404 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.404 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.404 -07 000000579 INF: FPGA: Recv ZSGSRD 36563
17-03-18 02:29:25.414 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.414 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.414 -07 000000606 INF: FPGA: Recv ZSGSRD 36562
17-03-18 02:29:25.424 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.424 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.424 -07 000000501 INF: FPGA: Recv ZSGSRD 36562
17-03-18 02:29:25.434 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.434 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.434 -07 000000591 INF: FPGA: Recv ZSGSRD 36555
17-03-18 02:29:25.444 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.444 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.444 -07 000000561 INF: FPGA: Recv ZSGSRD 36558
17-03-18 02:29:25.454 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.454 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.454 -07 000000502 INF: FPGA: Recv ZSGSRD 36557
17-03-18 02:29:25.464 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.464 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.464 -07 000000462 INF: FPGA: Recv ZSGSRD 36562
17-03-18 02:29:25.474 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.474 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:25.474 -07 000000430 INF: FPGA: Recv ZSGSRD 36565
17-03-18 02:29:25.484 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.484 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:25.484 -07 000000444 INF: FPGA: Recv ZPIEZORD 32697
17-03-18 02:29:25.494 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:25.494 -07 000000512 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.839 V. Piezo Error = -8.5 V.
17-03-18 02:29:25.494 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36561 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36562 (-174.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36555 (-174.3 uncal um), Max = 36565 (-174.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:29:25.494 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36561, posNoise = 4, negNoise = 6
17-03-18 02:29:25.494 -07 000000512 INF: Z Motor: After move to -0.175184, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:25.494 -07 000000512 INF: Z Motor: Settle wait time = 1454 ms, measure time = 110 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:29:25.494 -07 000000512 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:25.534 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:29:25.534 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:25.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:25.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:25.534 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:25.534 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:25.534 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:25.534 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:25.544 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:25.544 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:25.544 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:25.544 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:25.554 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:29:25.554 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:29:25.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:25.604 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:25.904 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:25.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:25.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:25.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-18 02:29:25.944 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:25.944 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:25.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 02:29:26.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:29:26.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:26.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:29:26.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:29:26.044 -07 000000618 INF: Autofocus start
17-03-18 02:29:26.044 -07 000000618 INF: MeasureProfile start
17-03-18 02:29:26.044 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:26.044 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:26.054 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:29:26.054 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:26.054 -07 000000618 INF: MeasureProfile done
17-03-18 02:29:26.054 -07 000000618 INF: X=-32  Z correction [um]=-0.2344
17-03-18 02:29:26.054 -07 000000618 INF: Autofocus finished
17-03-18 02:29:26.254 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:26.254 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 203 ms overall
17-03-18 02:29:26.254 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175198972126057. ----------
17-03-18 02:29:26.254 -07 000000610 INF: Cycle	100	Tile	11	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:26.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36730, sync = True, waitForSettling = True)
17-03-18 02:29:26.264 -07 000000610 INF: Z Motor: Moving to -0.168139 mm, started at -0.175199 mm, distance = 7.06 um
17-03-18 02:29:26.264 -07 000000610 INF: FPGA: Xmit ZDACW 36730\n [Z Motor]
17-03-18 02:29:26.264 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:29:26.274 -07 000000610 INF: FPGA: 'ZDACW 36730' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:26.274 -07 000000444 INF: FPGA: Recv ZDACR 36730
17-03-18 02:29:26.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:26.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.434 -07 000000626 INF: FPGA: Recv ZSGSRD 35467
17-03-18 02:29:26.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:26.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.444 -07 000000430 INF: FPGA: Recv ZSGSRD 35466
17-03-18 02:29:26.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.454 -07 000000606 INF: FPGA: Recv ZSGSRD 35464
17-03-18 02:29:26.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.464 -07 000000424 INF: FPGA: Recv ZSGSRD 35463
17-03-18 02:29:26.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.474 -07 000000502 INF: FPGA: Recv ZSGSRD 35462
17-03-18 02:29:26.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.484 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:26.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:26.484 -07 000000424 INF: FPGA: Recv ZSGSRD 35459
17-03-18 02:29:26.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:26.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.494 -07 000000455 INF: FPGA: Recv ZSGSRD 35468
17-03-18 02:29:26.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.504 -07 000000590 INF: FPGA: Recv ZSGSRD 35466
17-03-18 02:29:26.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.514 -07 000000430 INF: FPGA: Recv ZSGSRD 35462
17-03-18 02:29:26.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:26.524 -07 000000502 INF: FPGA: Recv ZSGSRD 35463
17-03-18 02:29:26.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:26.534 -07 000000462 INF: FPGA: Recv ZPIEZORD 31251
17-03-18 02:29:26.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:26.544 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.605 V. Piezo Error = -9.3 V.
17-03-18 02:29:26.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35464 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35464 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35459 (-167.2 uncal um), Max = 35468 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:29:26.544 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35464, posNoise = 4, negNoise = 5
17-03-18 02:29:26.544 -07 000000610 INF: Z Motor: After move to -0.168139, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:26.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:29:26.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:26.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:26.544 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:26.544 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:26.544 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:26.544 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:26.544 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:26.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:26.544 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:26.544 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:26.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:26.544 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:26.544 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:26.554 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:26.554 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:29:26.554 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:26.554 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:29:26.554 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:26.564 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:29:26.564 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:26.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36907 150\n [Camera]
17-03-18 02:29:26.764 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:27.154 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:27.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:27.154 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:27.154 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:27.154 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:29:27.164 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:27.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:27.164 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:27.164 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:27.164 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:29:27.354 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36907 780
17-03-18 02:29:27.504 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:27.534 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:29:27.544 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:29:27.544 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:29:27.544 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:29:27.544 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:27.544 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:27.544 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:27.544 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:29:27.544 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:29:27.554 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:29:27.694 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:27.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:27.694 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:27.694 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:27.694 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:29:27.694 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:27.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:27.694 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:27.694 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:27.694 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:29:27.884 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:29:27.884 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:27.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36907 150' command took 2 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-18 02:29:28.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:28.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168151611406546. ------
17-03-18 02:29:28.014 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17469 mm
17-03-18 02:29:28.014 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:28.014 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:28.014 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:28.024 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:28.024 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38162, sync = True, waitForSettling = False)
17-03-18 02:29:28.024 -07 000000467 INF: Z Motor: Moving to -0.174694 mm, started at -0.168152 mm, distance = -6.54 um
17-03-18 02:29:28.024 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:28.024 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:29:28.024 -07 000000579 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 02:29:28.034 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:28.034 -07 000000606 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:29:28.044 -07 000000467 INF: FPGA: Xmit ZDACW 38162\n [Z Motor]
17-03-18 02:29:28.044 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:28.044 -07 000000579 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:28.044 -07 000000579 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:28.044 -07 000000579 INF: Y Motor: Moving 1340 steps-15
17-03-18 02:29:28.044 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:29:28.054 -07 000000467 INF: FPGA: 'ZDACW 38162' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:28.054 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:28.064 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:28.064 -07 000000591 INF: FPGA: Recv ZDACR 38162
17-03-18 02:29:28.074 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:29:28.074 -07 000000467 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:29:28.094 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:29:28.094 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:29:28.094 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:28.094 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:29:28.094 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:29:28.094 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:28.104 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:28.104 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:29:28.104 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:29:28.104 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:29:28.224 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:28.224 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:29:28.424 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:29:28.424 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 387 ms overall
17-03-18 02:29:28.474 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:28.474 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:29:28.484 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:29:28.484 -07 000000579 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:28.484 -07 000000579 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:29:28.484 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.164 mm/sec
17-03-18 02:29:29.084 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.974486,
17-03-18 02:29:29.434 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:29.434 -07 000000591 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:29:29.444 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:29.444 -07 000000579 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:29.464 -07 000000579 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:29.464 -07 000000579 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:29.464 -07 000000579 INF: Y Motor: Moved to 69.0273 after 1447 ms (table move)
17-03-18 02:29:29.474 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174694 mm (DAC = 38162)
17-03-18 02:29:29.474 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.474 -07 000000444 INF: FPGA: Recv ZSGSRD 36482
17-03-18 02:29:29.484 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:29.484 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.484 -07 000000461 INF: FPGA: Recv ZSGSRD 36488
17-03-18 02:29:29.494 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.494 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.494 -07 000000618 INF: FPGA: Recv ZSGSRD 36486
17-03-18 02:29:29.504 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.504 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.504 -07 000000502 INF: FPGA: Recv ZSGSRD 36480
17-03-18 02:29:29.514 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.514 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.514 -07 000000561 INF: FPGA: Recv ZSGSRD 36479
17-03-18 02:29:29.524 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.524 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.524 -07 000000444 INF: FPGA: Recv ZSGSRD 36486
17-03-18 02:29:29.534 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.534 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.534 -07 000000591 INF: FPGA: Recv ZSGSRD 36486
17-03-18 02:29:29.544 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.544 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.544 -07 000000629 INF: FPGA: Recv ZSGSRD 36484
17-03-18 02:29:29.554 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.554 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.554 -07 000000467 INF: FPGA: Recv ZSGSRD 36481
17-03-18 02:29:29.564 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.564 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:29.564 -07 000000606 INF: FPGA: Recv ZSGSRD 36487
17-03-18 02:29:29.574 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.574 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:29.574 -07 000000590 INF: FPGA: Recv ZPIEZORD 32628
17-03-18 02:29:29.584 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:29.584 -07 000000430 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.5 V.
17-03-18 02:29:29.584 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36484 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36485 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36479 (-173.8 uncal um), Max = 36488 (-173.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:29:29.584 -07 000000430 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36484, posNoise = 4, negNoise = 5
17-03-18 02:29:29.584 -07 000000430 INF: Z Motor: After move to -0.174694, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:29.584 -07 000000430 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-18 02:29:29.584 -07 000000430 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:29.634 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:29:29.634 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:29.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:29.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:29.634 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:29.634 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:29.634 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:29.634 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:29.634 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:29.634 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:29.644 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:29.644 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:29.654 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:29:29.654 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:29:29.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:29.704 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:30.004 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:30.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:30.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:30.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:29:30.044 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:30.044 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:30.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:29:30.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:29:30.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:30.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:30.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:29:30.144 -07 000000424 INF: Autofocus start
17-03-18 02:29:30.144 -07 000000424 INF: MeasureProfile start
17-03-18 02:29:30.144 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:30.144 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:30.154 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:30.154 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:30.154 -07 000000424 INF: MeasureProfile done
17-03-18 02:29:30.154 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:29:30.154 -07 000000424 INF: Autofocus finished
17-03-18 02:29:30.354 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:30.354 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:29:30.354 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.174704307791142. ----------
17-03-18 02:29:30.354 -07 000000610 INF: Cycle	100	Tile	12	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:30.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36695, sync = True, waitForSettling = True)
17-03-18 02:29:30.364 -07 000000610 INF: Z Motor: Moving to -0.167979 mm, started at -0.174704 mm, distance = 6.73 um
17-03-18 02:29:30.364 -07 000000610 INF: FPGA: Xmit ZDACW 36695\n [Z Motor]
17-03-18 02:29:30.364 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:29:30.374 -07 000000610 INF: FPGA: 'ZDACW 36695' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:30.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:30.374 -07 000000569 INF: FPGA: Recv ZDACR 36695
17-03-18 02:29:30.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:30.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.534 -07 000000590 INF: FPGA: Recv ZSGSRD 35443
17-03-18 02:29:30.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.544 -07 000000462 INF: FPGA: Recv ZSGSRD 35442
17-03-18 02:29:30.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.554 -07 000000591 INF: FPGA: Recv ZSGSRD 35440
17-03-18 02:29:30.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.564 -07 000000576 INF: FPGA: Recv ZSGSRD 35437
17-03-18 02:29:30.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.574 -07 000000501 INF: FPGA: Recv ZSGSRD 35438
17-03-18 02:29:30.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.584 -07 000000591 INF: FPGA: Recv ZSGSRD 35442
17-03-18 02:29:30.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.594 -07 000000626 INF: FPGA: Recv ZSGSRD 35440
17-03-18 02:29:30.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.604 -07 000000629 INF: FPGA: Recv ZSGSRD 35436
17-03-18 02:29:30.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.614 -07 000000561 INF: FPGA: Recv ZSGSRD 35440
17-03-18 02:29:30.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:30.624 -07 000000467 INF: FPGA: Recv ZSGSRD 35436
17-03-18 02:29:30.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:30.634 -07 000000569 INF: FPGA: Recv ZPIEZORD 31218
17-03-18 02:29:30.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:30.644 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.3 V.
17-03-18 02:29:30.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35439 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35440 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35436 (-167.1 uncal um), Max = 35443 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:29:30.644 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35439, posNoise = 4, negNoise = 3
17-03-18 02:29:30.644 -07 000000610 INF: Z Motor: After move to -0.167979, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:30.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:29:30.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:30.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:30.644 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:30.644 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:30.644 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:30.644 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:30.644 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:30.644 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:30.644 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:30.644 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:30.644 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:30.644 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:30.654 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:30.654 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:30.654 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:29:30.654 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:30.664 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:29:30.664 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:30.664 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:29:30.664 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:29:30.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36872 150\n [Camera]
17-03-18 02:29:30.864 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:31.264 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:31.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:31.264 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:31.264 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:31.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:31.264 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:31.274 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:31.274 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:29:31.274 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:31.274 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) start.
17-03-18 02:29:31.454 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36872 780
17-03-18 02:29:31.484 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:31.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:31.604 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:31.644 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:29:31.644 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:29:31.644 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:31.644 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:29:31.644 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:29:31.644 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:31.654 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:29:31.654 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:29:31.654 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:31.664 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:29:31.794 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:31.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:31.794 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:31.794 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:31.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:31.794 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:31.804 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:31.804 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:29:31.804 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:31.804 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:29:31.984 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:29:31.984 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:31.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36872 150' command took 2 ms to send, 1315 ms to get response, and 1319 ms overall
17-03-18 02:29:32.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:32.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.167991006103002. ------
17-03-18 02:29:32.114 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:32.114 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17445 mm
17-03-18 02:29:32.114 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:32.114 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:29:32.114 -07 000000467 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:29:32.114 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38108, sync = True, waitForSettling = False)
17-03-18 02:29:32.114 -07 000000561 INF: Z Motor: Moving to -0.174447 mm, started at -0.167991 mm, distance = -6.46 um
17-03-18 02:29:32.124 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:32.124 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:32.124 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:29:32.124 -07 000000462 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:29:32.134 -07 000000561 INF: FPGA: Xmit ZDACW 38108\n [Z Motor]
17-03-18 02:29:32.134 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:32.134 -07 000000467 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:32.134 -07 000000467 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:32.134 -07 000000467 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:29:32.134 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:29:32.144 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:32.144 -07 000000561 INF: FPGA: 'ZDACW 38108' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:32.154 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:32.164 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:32.164 -07 000000618 INF: FPGA: Recv ZDACR 38108
17-03-18 02:29:32.174 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:32.174 -07 000000561 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:29:32.194 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:29:32.194 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:29:32.194 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:32.194 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:29:32.194 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:29:32.194 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:32.204 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:32.204 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:29:32.204 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:32.204 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:29:32.344 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:32.344 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 02:29:32.524 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:29:32.534 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 02:29:32.574 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:32.574 -07 000000591 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:29:32.584 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:32.584 -07 000000467 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:32.584 -07 000000467 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:29:32.584 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.118 mm/sec
17-03-18 02:29:33.534 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:33.534 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:29:33.544 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:33.544 -07 000000467 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:33.564 -07 000000467 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:33.564 -07 000000467 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:33.564 -07 000000467 INF: Y Motor: Moved to 69.8633 after 1449 ms (table move)
17-03-18 02:29:33.574 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174447 mm (DAC = 38108)
17-03-18 02:29:33.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.574 -07 000000512 INF: FPGA: Recv ZSGSRD 36441
17-03-18 02:29:33.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:33.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.584 -07 000000618 INF: FPGA: Recv ZSGSRD 36441
17-03-18 02:29:33.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:33.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.594 -07 000000462 INF: FPGA: Recv ZSGSRD 36443
17-03-18 02:29:33.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:33.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.604 -07 000000590 INF: FPGA: Recv ZSGSRD 36430
17-03-18 02:29:33.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:33.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.614 -07 000000467 INF: FPGA: Recv ZSGSRD 36447
17-03-18 02:29:33.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:33.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.624 -07 000000512 INF: FPGA: Recv ZSGSRD 36445
17-03-18 02:29:33.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:33.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.634 -07 000000618 INF: FPGA: Recv ZSGSRD 36441
17-03-18 02:29:33.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:33.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.644 -07 000000455 INF: FPGA: Recv ZSGSRD 36455
17-03-18 02:29:33.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:33.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.654 -07 000000461 INF: FPGA: Recv ZSGSRD 36439
17-03-18 02:29:33.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:33.664 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:33.664 -07 000000569 INF: FPGA: Recv ZSGSRD 36446
17-03-18 02:29:33.674 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:33.684 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:33.684 -07 000000461 INF: FPGA: Recv ZPIEZORD 32579
17-03-18 02:29:33.694 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:33.694 -07 000000606 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.815 V. Piezo Error = -8.6 V.
17-03-18 02:29:33.694 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36443 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36442 (-173.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 25 (0.2 uncal um), Min = 36430 (-173.5 uncal um), Max = 36455 (-173.6 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-18 02:29:33.694 -07 000000606 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36443, posNoise = 12, negNoise = 13
17-03-18 02:29:33.694 -07 000000606 INF: Z Motor: After move to -0.174447, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:33.694 -07 000000606 INF: Z Motor: Settle wait time = 1453 ms, measure time = 117 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:29:33.694 -07 000000606 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:33.734 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:29:33.734 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:33.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:33.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:33.734 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:33.734 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:33.734 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:33.734 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:33.744 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:33.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:33.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:33.744 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:33.754 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:29:33.754 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:29:33.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:33.794 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:34.094 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:34.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:34.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:34.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:29:34.134 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:34.134 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:34.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:29:34.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:29:34.214 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:34.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:34.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:29:34.234 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:34.234 -07 000000461 INF: Autofocus start
17-03-18 02:29:34.234 -07 000000461 INF: MeasureProfile start
17-03-18 02:29:34.234 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:34.244 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:34.244 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:34.244 -07 000000461 INF: MeasureProfile done
17-03-18 02:29:34.244 -07 000000461 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:29:34.244 -07 000000461 INF: Autofocus finished
17-03-18 02:29:34.444 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.003063,
17-03-18 02:29:34.444 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:34.444 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:29:34.444 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.17444091509333. ----------
17-03-18 02:29:34.444 -07 000000610 INF: Cycle	100	Tile	13	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:34.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36605, sync = True, waitForSettling = True)
17-03-18 02:29:34.454 -07 000000610 INF: Z Motor: Moving to -0.167567 mm, started at -0.174441 mm, distance = 6.87 um
17-03-18 02:29:34.464 -07 000000610 INF: FPGA: Xmit ZDACW 36605\n [Z Motor]
17-03-18 02:29:34.464 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:29:34.474 -07 000000610 INF: FPGA: 'ZDACW 36605' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:29:34.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:34.484 -07 000000455 INF: FPGA: Recv ZDACR 36605
17-03-18 02:29:34.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:34.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:34.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.644 -07 000000462 INF: FPGA: Recv ZSGSRD 35374
17-03-18 02:29:34.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:34.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.654 -07 000000455 INF: FPGA: Recv ZSGSRD 35372
17-03-18 02:29:34.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.664 -07 000000424 INF: FPGA: Recv ZSGSRD 35377
17-03-18 02:29:34.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.674 -07 000000579 INF: FPGA: Recv ZSGSRD 35373
17-03-18 02:29:34.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.684 -07 000000502 INF: FPGA: Recv ZSGSRD 35374
17-03-18 02:29:34.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.694 -07 000000576 INF: FPGA: Recv ZSGSRD 35376
17-03-18 02:29:34.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35372
17-03-18 02:29:34.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.714 -07 000000591 INF: FPGA: Recv ZSGSRD 35373
17-03-18 02:29:34.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.724 -07 000000561 INF: FPGA: Recv ZSGSRD 35374
17-03-18 02:29:34.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:34.734 -07 000000579 INF: FPGA: Recv ZSGSRD 35374
17-03-18 02:29:34.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:34.744 -07 000000512 INF: FPGA: Recv ZPIEZORD 31139
17-03-18 02:29:34.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:34.754 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.3 V.
17-03-18 02:29:34.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35374 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35374 (-166.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35372 (-166.7 uncal um), Max = 35377 (-166.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:29:34.754 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35374, posNoise = 3, negNoise = 2
17-03-18 02:29:34.754 -07 000000610 INF: Z Motor: After move to -0.167567, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:34.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-18 02:29:34.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:34.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:34.754 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:34.754 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:34.754 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:34.754 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:34.754 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:34.754 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:34.754 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:34.754 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:34.754 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:34.754 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:34.764 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:34.764 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:34.764 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:29:34.764 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:34.774 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:29:34.774 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:34.774 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:29:34.774 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:34.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36781 150\n [Camera]
17-03-18 02:29:34.974 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:35.364 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:35.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:35.374 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:35.374 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:35.374 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:29:35.374 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:35.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:35.374 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:35.374 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:35.374 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:29:35.564 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36781 780
17-03-18 02:29:35.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:35.754 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:29:35.754 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:29:35.754 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:35.754 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:29:35.754 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:29:35.754 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:35.754 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:35.754 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:35.754 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:29:35.764 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:29:35.904 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:35.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:35.904 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:35.904 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:35.904 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:29:35.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:35.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:35.904 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:35.904 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:35.904 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:29:36.094 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:29:36.094 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:36.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36781 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-18 02:29:36.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:36.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167573432313787. ------
17-03-18 02:29:36.104 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:36.104 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17387 mm
17-03-18 02:29:36.104 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:36.104 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:29:36.104 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:29:36.104 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:36.104 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37981, sync = True, waitForSettling = False)
17-03-18 02:29:36.104 -07 000000502 INF: Z Motor: Moving to -0.173866 mm, started at -0.167573 mm, distance = -6.29 um
17-03-18 02:29:36.114 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:36.114 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:36.114 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:29:36.124 -07 000000502 INF: FPGA: Xmit ZDACW 37981\n [Z Motor]
17-03-18 02:29:36.124 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:29:36.124 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:36.124 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:36.124 -07 000000512 INF: Y Motor: Moving 1343 steps-19
17-03-18 02:29:36.124 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:29:36.134 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:36.134 -07 000000502 INF: FPGA: 'ZDACW 37981' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:29:36.144 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:36.154 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:36.154 -07 000000444 INF: FPGA: Recv ZDACR 37981
17-03-18 02:29:36.164 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:36.164 -07 000000502 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:29:36.304 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:29:36.304 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:29:36.304 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:36.304 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:29:36.304 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:29:36.304 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:36.304 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:36.314 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:29:36.314 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:29:36.314 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:29:36.334 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:36.334 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:29:36.484 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:36.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:36.514 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:29:36.514 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:29:36.564 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:36.564 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:29:36.574 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:29:36.574 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:36.574 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:29:36.574 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 02:29:37.524 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:37.524 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:29:37.534 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:37.534 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:37.564 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:37.564 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:37.564 -07 000000512 INF: Y Motor: Moved to 70.6885 after 1455 ms (table move)
17-03-18 02:29:37.564 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173866 mm (DAC = 37981)
17-03-18 02:29:37.564 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.564 -07 000000462 INF: FPGA: Recv ZSGSRD 36361
17-03-18 02:29:37.574 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:29:37.574 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.574 -07 000000591 INF: FPGA: Recv ZSGSRD 36357
17-03-18 02:29:37.584 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.584 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.584 -07 000000579 INF: FPGA: Recv ZSGSRD 36355
17-03-18 02:29:37.594 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.594 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.594 -07 000000461 INF: FPGA: Recv ZSGSRD 36357
17-03-18 02:29:37.604 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.604 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.604 -07 000000569 INF: FPGA: Recv ZSGSRD 36355
17-03-18 02:29:37.614 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.614 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.614 -07 000000512 INF: FPGA: Recv ZSGSRD 36354
17-03-18 02:29:37.624 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.624 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.624 -07 000000591 INF: FPGA: Recv ZSGSRD 36351
17-03-18 02:29:37.634 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.634 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.634 -07 000000618 INF: FPGA: Recv ZSGSRD 36350
17-03-18 02:29:37.644 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.644 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.644 -07 000000455 INF: FPGA: Recv ZSGSRD 36357
17-03-18 02:29:37.654 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.654 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:37.654 -07 000000606 INF: FPGA: Recv ZSGSRD 36356
17-03-18 02:29:37.664 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.664 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:37.664 -07 000000512 INF: FPGA: Recv ZPIEZORD 32473
17-03-18 02:29:37.674 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:37.674 -07 000000590 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.6 V.
17-03-18 02:29:37.674 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36355 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36356 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36350 (-173.0 uncal um), Max = 36361 (-173.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:29:37.674 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36355, posNoise = 6, negNoise = 5
17-03-18 02:29:37.674 -07 000000590 INF: Z Motor: After move to -0.173866, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:37.674 -07 000000590 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:29:37.674 -07 000000590 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:37.724 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:29:37.724 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:37.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:37.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:37.724 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:37.724 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:37.724 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:37.724 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:37.724 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:37.724 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:37.734 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:37.734 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:37.734 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:29:37.734 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:29:37.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:37.784 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:38.084 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:38.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:38.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:38.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1186874696, 0x0, 559484976) start.
17-03-18 02:29:38.124 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:38.124 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:38.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:29:38.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1186874696, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:29:38.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:38.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:38.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:29:38.224 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:38.224 -07 000000462 INF: Autofocus start
17-03-18 02:29:38.224 -07 000000462 INF: MeasureProfile start
17-03-18 02:29:38.224 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:38.234 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:38.234 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:38.234 -07 000000462 INF: MeasureProfile done
17-03-18 02:29:38.234 -07 000000462 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:29:38.234 -07 000000462 INF: Autofocus finished
17-03-18 02:29:38.434 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:38.434 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 02:29:38.444 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.173875584424855. ----------
17-03-18 02:29:38.444 -07 000000610 INF: Cycle	100	Tile	14	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:38.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36532, sync = True, waitForSettling = True)
17-03-18 02:29:38.444 -07 000000610 INF: Z Motor: Moving to -0.167233 mm, started at -0.173876 mm, distance = 6.64 um
17-03-18 02:29:38.444 -07 000000610 INF: FPGA: Xmit ZDACW 36532\n [Z Motor]
17-03-18 02:29:38.444 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:29:38.454 -07 000000610 INF: FPGA: 'ZDACW 36532' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:29:38.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:38.454 -07 000000606 INF: FPGA: Recv ZDACR 36532
17-03-18 02:29:38.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:38.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.614 -07 000000512 INF: FPGA: Recv ZSGSRD 35327
17-03-18 02:29:38.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:38.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.624 -07 000000579 INF: FPGA: Recv ZSGSRD 35326
17-03-18 02:29:38.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.634 -07 000000569 INF: FPGA: Recv ZSGSRD 35323
17-03-18 02:29:38.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.644 -07 000000461 INF: FPGA: Recv ZSGSRD 35320
17-03-18 02:29:38.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.654 -07 000000618 INF: FPGA: Recv ZSGSRD 35325
17-03-18 02:29:38.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.664 -07 000000590 INF: FPGA: Recv ZSGSRD 35326
17-03-18 02:29:38.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.674 -07 000000591 INF: FPGA: Recv ZSGSRD 35322
17-03-18 02:29:38.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.684 -07 000000501 INF: FPGA: Recv ZSGSRD 35324
17-03-18 02:29:38.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.694 -07 000000430 INF: FPGA: Recv ZSGSRD 35326
17-03-18 02:29:38.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:38.704 -07 000000606 INF: FPGA: Recv ZSGSRD 35321
17-03-18 02:29:38.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:38.714 -07 000000462 INF: FPGA: Recv ZPIEZORD 31072
17-03-18 02:29:38.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:38.724 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.4 V.
17-03-18 02:29:38.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35324 (-166.4 uncal um), Error = 0.8 uncal um, Median = 35324 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35320 (-166.4 uncal um), Max = 35327 (-166.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:29:38.724 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35324, posNoise = 3, negNoise = 4
17-03-18 02:29:38.724 -07 000000610 INF: Z Motor: After move to -0.167233, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:38.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:29:38.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:38.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:38.724 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:38.724 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:38.724 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:38.724 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:38.724 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:38.724 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:38.724 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:38.724 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:38.724 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:38.724 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:38.734 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:38.734 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:38.734 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:29:38.734 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:38.744 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:29:38.744 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:38.744 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:29:38.744 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:38.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36709 150\n [Camera]
17-03-18 02:29:38.944 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:39.334 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:39.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:39.334 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:39.334 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:39.334 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:29:39.344 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:39.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:39.344 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:39.344 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:39.344 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:29:39.534 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36709 780
17-03-18 02:29:39.684 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:39.734 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:29:39.734 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:29:39.734 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:39.734 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:29:39.734 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:29:39.734 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:39.734 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:39.734 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:39.734 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:29:39.744 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:29:39.824 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.003063,
17-03-18 02:29:39.874 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:39.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:39.874 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:39.874 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:39.874 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:29:39.874 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:39.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:39.874 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:39.874 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:39.874 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:29:40.064 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:29:40.064 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:40.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36709 150' command took 2 ms to send, 1313 ms to get response, and 1319 ms overall
17-03-18 02:29:40.184 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:40.184 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167252221706699. ------
17-03-18 02:29:40.184 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:40.184 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17395 mm
17-03-18 02:29:40.184 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:40.184 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:29:40.184 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:29:40.194 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:40.194 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38000, sync = True, waitForSettling = False)
17-03-18 02:29:40.194 -07 000000444 INF: Z Motor: Moving to -0.173953 mm, started at -0.167252 mm, distance = -6.70 um
17-03-18 02:29:40.194 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:40.194 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 02:29:40.194 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:29:40.204 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:40.204 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:40.204 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:40.204 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:40.204 -07 000000512 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:29:40.214 -07 000000444 INF: FPGA: Xmit ZDACW 38000\n [Z Motor]
17-03-18 02:29:40.214 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:29:40.224 -07 000000444 INF: FPGA: 'ZDACW 38000' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:40.224 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:40.234 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:40.234 -07 000000591 INF: FPGA: Recv ZDACR 38000
17-03-18 02:29:40.244 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:40.244 -07 000000444 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:29:40.274 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:29:40.274 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:29:40.274 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:40.274 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:29:40.274 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:29:40.274 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:40.284 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:40.284 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:29:40.284 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:29:40.284 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:29:40.404 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:40.404 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 02:29:40.594 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:29:40.594 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:29:40.644 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:40.644 -07 000000444 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:29:40.654 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:40.654 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:40.654 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:29:40.654 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 02:29:41.484 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:41.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:41.604 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:41.604 -07 000000626 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:29:41.614 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:41.614 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:41.634 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:41.634 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:41.634 -07 000000512 INF: Y Motor: Moved to 71.5190 after 1448 ms (table move)
17-03-18 02:29:41.644 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173953 mm (DAC = 38000)
17-03-18 02:29:41.644 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.644 -07 000000618 INF: FPGA: Recv ZSGSRD 36377
17-03-18 02:29:41.654 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:41.654 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.654 -07 000000424 INF: FPGA: Recv ZSGSRD 36367
17-03-18 02:29:41.664 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.664 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.664 -07 000000590 INF: FPGA: Recv ZSGSRD 36370
17-03-18 02:29:41.674 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.674 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.674 -07 000000606 INF: FPGA: Recv ZSGSRD 36372
17-03-18 02:29:41.684 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.684 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.684 -07 000000576 INF: FPGA: Recv ZSGSRD 36373
17-03-18 02:29:41.694 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.694 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.694 -07 000000618 INF: FPGA: Recv ZSGSRD 36368
17-03-18 02:29:41.704 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.704 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.704 -07 000000591 INF: FPGA: Recv ZSGSRD 36363
17-03-18 02:29:41.714 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.714 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.714 -07 000000629 INF: FPGA: Recv ZSGSRD 36362
17-03-18 02:29:41.724 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.724 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.724 -07 000000606 INF: FPGA: Recv ZSGSRD 36360
17-03-18 02:29:41.734 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.734 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:41.734 -07 000000424 INF: FPGA: Recv ZSGSRD 36370
17-03-18 02:29:41.744 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.744 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:41.744 -07 000000569 INF: FPGA: Recv ZPIEZORD 32485
17-03-18 02:29:41.754 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:41.754 -07 000000561 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.6 V.
17-03-18 02:29:41.754 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36368 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36369 (-173.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36360 (-173.0 uncal um), Max = 36377 (-173.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:29:41.754 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36368, posNoise = 9, negNoise = 8
17-03-18 02:29:41.754 -07 000000561 INF: Z Motor: After move to -0.173953, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:41.754 -07 000000561 INF: Z Motor: Settle wait time = 1452 ms, measure time = 108 ms (allowed 150 ms), total time = 1560 ms
17-03-18 02:29:41.754 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:41.804 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:29:41.804 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:41.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:41.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:41.804 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:41.804 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:41.804 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:41.804 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:41.804 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:41.804 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:41.814 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:41.814 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:41.824 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:29:41.824 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:29:41.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:41.874 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:42.174 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:42.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:42.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:42.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:29:42.204 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:42.214 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:42.214 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:29:42.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:29:42.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:42.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:42.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:29:42.314 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:42.314 -07 000000502 INF: Autofocus start
17-03-18 02:29:42.314 -07 000000502 INF: MeasureProfile start
17-03-18 02:29:42.314 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:42.324 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:42.324 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:42.324 -07 000000502 INF: MeasureProfile done
17-03-18 02:29:42.324 -07 000000502 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:29:42.324 -07 000000502 INF: Autofocus finished
17-03-18 02:29:42.524 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:42.524 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:29:42.524 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.173959099182697. ----------
17-03-18 02:29:42.524 -07 000000610 INF: Cycle	100	Tile	15	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:42.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36532, sync = True, waitForSettling = True)
17-03-18 02:29:42.534 -07 000000610 INF: Z Motor: Moving to -0.167233 mm, started at -0.173959 mm, distance = 6.73 um
17-03-18 02:29:42.534 -07 000000610 INF: FPGA: Xmit ZDACW 36532\n [Z Motor]
17-03-18 02:29:42.534 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:29:42.544 -07 000000610 INF: FPGA: 'ZDACW 36532' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:42.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:42.544 -07 000000455 INF: FPGA: Recv ZDACR 36532
17-03-18 02:29:42.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:42.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.704 -07 000000576 INF: FPGA: Recv ZSGSRD 35324
17-03-18 02:29:42.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.714 -07 000000618 INF: FPGA: Recv ZSGSRD 35324
17-03-18 02:29:42.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.724 -07 000000444 INF: FPGA: Recv ZSGSRD 35322
17-03-18 02:29:42.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.734 -07 000000502 INF: FPGA: Recv ZSGSRD 35320
17-03-18 02:29:42.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.744 -07 000000569 INF: FPGA: Recv ZSGSRD 35326
17-03-18 02:29:42.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.754 -07 000000430 INF: FPGA: Recv ZSGSRD 35321
17-03-18 02:29:42.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.764 -07 000000467 INF: FPGA: Recv ZSGSRD 35326
17-03-18 02:29:42.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.774 -07 000000501 INF: FPGA: Recv ZSGSRD 35327
17-03-18 02:29:42.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.784 -07 000000467 INF: FPGA: Recv ZSGSRD 35324
17-03-18 02:29:42.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:42.794 -07 000000501 INF: FPGA: Recv ZSGSRD 35323
17-03-18 02:29:42.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:42.804 -07 000000591 INF: FPGA: Recv ZPIEZORD 31090
17-03-18 02:29:42.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:42.814 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.3 V.
17-03-18 02:29:42.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35324 (-166.4 uncal um), Error = 0.8 uncal um, Median = 35324 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35320 (-166.4 uncal um), Max = 35327 (-166.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:29:42.814 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35324, posNoise = 3, negNoise = 4
17-03-18 02:29:42.814 -07 000000610 INF: Z Motor: After move to -0.167233, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:42.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:29:42.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:42.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:42.814 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:42.814 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:42.814 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:42.814 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:42.814 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:42.824 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:42.824 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:42.824 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:42.824 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:29:42.824 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:42.824 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:29:42.824 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:42.824 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:42.824 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:42.834 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:29:42.834 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:29:42.834 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:29:42.834 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:29:42.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36709 150\n [Camera]
17-03-18 02:29:43.034 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:43.434 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:43.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:43.434 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:43.434 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:43.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:43.434 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:43.444 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:43.444 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:29:43.444 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:43.444 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:29:43.624 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36709 780
17-03-18 02:29:43.774 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:43.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:29:43.814 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:29:43.814 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:43.814 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:29:43.814 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:29:43.814 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:43.824 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:43.824 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:43.824 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:29:43.824 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:29:43.964 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:43.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:43.964 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:43.964 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:43.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:43.964 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:43.974 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:43.974 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:29:43.974 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:43.974 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:29:44.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:29:44.154 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:44.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36709 150' command took 2 ms to send, 1309 ms to get response, and 1322 ms overall
17-03-18 02:29:44.164 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:44.164 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167252221706699. ------
17-03-18 02:29:44.284 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17362 mm
17-03-18 02:29:44.284 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:44.284 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:44.284 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:29:44.284 -07 000000576 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:29:44.284 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37928, sync = True, waitForSettling = False)
17-03-18 02:29:44.284 -07 000000606 INF: Z Motor: Moving to -0.173623 mm, started at -0.167252 mm, distance = -6.37 um
17-03-18 02:29:44.284 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:44.294 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:44.294 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:44.294 -07 000000569 INF: FPGA: Recv YRDPOS 146472
17-03-18 02:29:44.304 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:29:44.304 -07 000000576 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:44.304 -07 000000606 INF: FPGA: Xmit ZDACW 37928\n [Z Motor]
17-03-18 02:29:44.304 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:29:44.304 -07 000000576 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:44.304 -07 000000576 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:29:44.314 -07 000000606 INF: FPGA: 'ZDACW 37928' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:29:44.314 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:44.324 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:44.334 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:44.334 -07 000000618 INF: FPGA: Recv ZDACR 37928
17-03-18 02:29:44.344 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:44.344 -07 000000606 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:29:44.374 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:29:44.374 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:29:44.374 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:44.374 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:29:44.374 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:29:44.374 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:44.374 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:29:44.374 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:29:44.374 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:29:44.384 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:29:44.514 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:44.514 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:29:44.694 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:29:44.694 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:29:44.744 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:44.744 -07 000000561 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:29:44.754 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:44.754 -07 000000576 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:44.754 -07 000000576 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:29:44.754 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-18 02:29:45.184 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.993549,
17-03-18 02:29:45.704 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:45.704 -07 000000626 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:29:45.714 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:45.714 -07 000000576 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:45.734 -07 000000576 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:45.734 -07 000000576 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:45.734 -07 000000576 INF: Y Motor: Moved to 72.3496 after 1454 ms (table move)
17-03-18 02:29:45.744 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173623 mm (DAC = 37928)
17-03-18 02:29:45.744 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.744 -07 000000467 INF: FPGA: Recv ZSGSRD 36320
17-03-18 02:29:45.754 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:45.754 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.754 -07 000000444 INF: FPGA: Recv ZSGSRD 36316
17-03-18 02:29:45.764 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.764 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.764 -07 000000512 INF: FPGA: Recv ZSGSRD 36318
17-03-18 02:29:45.774 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.774 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.774 -07 000000424 INF: FPGA: Recv ZSGSRD 36320
17-03-18 02:29:45.784 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.784 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.784 -07 000000455 INF: FPGA: Recv ZSGSRD 36318
17-03-18 02:29:45.794 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.794 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.794 -07 000000569 INF: FPGA: Recv ZSGSRD 36316
17-03-18 02:29:45.804 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.804 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.804 -07 000000444 INF: FPGA: Recv ZSGSRD 36319
17-03-18 02:29:45.814 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.814 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.814 -07 000000618 INF: FPGA: Recv ZSGSRD 36318
17-03-18 02:29:45.824 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.824 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.824 -07 000000579 INF: FPGA: Recv ZSGSRD 36309
17-03-18 02:29:45.834 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.834 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:45.834 -07 000000502 INF: FPGA: Recv ZSGSRD 36322
17-03-18 02:29:45.844 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.844 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:45.844 -07 000000462 INF: FPGA: Recv ZPIEZORD 32418
17-03-18 02:29:45.854 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:45.854 -07 000000430 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.6 V.
17-03-18 02:29:45.854 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36318 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36318 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36309 (-172.7 uncal um), Max = 36322 (-172.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:29:45.854 -07 000000430 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36318, posNoise = 4, negNoise = 9
17-03-18 02:29:45.854 -07 000000430 INF: Z Motor: After move to -0.173623, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:45.854 -07 000000430 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:29:45.854 -07 000000430 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:45.904 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:29:45.904 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:45.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:45.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:45.904 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:45.904 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:45.904 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:45.904 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:45.904 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:45.904 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:45.914 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:45.914 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:45.914 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:29:45.914 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:29:45.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:45.964 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:46.264 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:46.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:46.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:46.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:29:46.304 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:46.304 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:46.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:29:46.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:29:46.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:46.394 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:29:46.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:29:46.404 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:46.404 -07 000000569 INF: Autofocus start
17-03-18 02:29:46.404 -07 000000569 INF: MeasureProfile start
17-03-18 02:29:46.404 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:46.414 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:29:46.414 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:46.414 -07 000000569 INF: MeasureProfile done
17-03-18 02:29:46.414 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:29:46.414 -07 000000569 INF: Autofocus finished
17-03-18 02:29:46.484 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:46.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:46.614 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:46.614 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 02:29:46.624 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173637888575609. ----------
17-03-18 02:29:46.634 -07 000000610 INF: Cycle	100	Tile	16	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:46.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36425, sync = True, waitForSettling = True)
17-03-18 02:29:46.634 -07 000000610 INF: Z Motor: Moving to -0.166743 mm, started at -0.173638 mm, distance = 6.89 um
17-03-18 02:29:46.634 -07 000000610 INF: FPGA: Xmit ZDACW 36425\n [Z Motor]
17-03-18 02:29:46.634 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:29:46.644 -07 000000610 INF: FPGA: 'ZDACW 36425' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:29:46.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:46.644 -07 000000579 INF: FPGA: Recv ZDACR 36425
17-03-18 02:29:46.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:46.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.804 -07 000000462 INF: FPGA: Recv ZSGSRD 35244
17-03-18 02:29:46.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:46.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.814 -07 000000591 INF: FPGA: Recv ZSGSRD 35252
17-03-18 02:29:46.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.824 -07 000000501 INF: FPGA: Recv ZSGSRD 35244
17-03-18 02:29:46.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.834 -07 000000424 INF: FPGA: Recv ZSGSRD 35247
17-03-18 02:29:46.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.844 -07 000000626 INF: FPGA: Recv ZSGSRD 35247
17-03-18 02:29:46.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.854 -07 000000462 INF: FPGA: Recv ZSGSRD 35242
17-03-18 02:29:46.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.864 -07 000000455 INF: FPGA: Recv ZSGSRD 35256
17-03-18 02:29:46.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.874 -07 000000502 INF: FPGA: Recv ZSGSRD 35242
17-03-18 02:29:46.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.884 -07 000000606 INF: FPGA: Recv ZSGSRD 35249
17-03-18 02:29:46.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:46.894 -07 000000561 INF: FPGA: Recv ZSGSRD 35249
17-03-18 02:29:46.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:46.904 -07 000000618 INF: FPGA: Recv ZPIEZORD 30993
17-03-18 02:29:46.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:46.914 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.4 V.
17-03-18 02:29:46.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35247 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35247 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35242 (-165.9 uncal um), Max = 35256 (-165.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:29:46.914 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35247, posNoise = 9, negNoise = 5
17-03-18 02:29:46.914 -07 000000610 INF: Z Motor: After move to -0.166743, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:46.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:29:46.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:46.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:46.914 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:46.914 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:46.914 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:46.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:46.914 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:46.914 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:46.914 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:46.914 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:46.914 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:46.914 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:46.924 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:29:46.924 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:46.924 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:46.924 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:46.934 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:29:46.934 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:29:46.934 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:29:46.934 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:29:46.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36601 150\n [Camera]
17-03-18 02:29:47.134 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:47.524 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:47.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:47.534 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:47.534 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:47.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:47.534 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:47.534 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:47.534 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:29:47.534 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:47.534 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:29:47.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36601 780
17-03-18 02:29:47.874 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:47.934 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:29:47.934 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:29:47.934 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:47.934 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:29:47.934 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:47.934 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:29:47.934 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:29:47.934 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:47.934 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:47.944 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:29:48.064 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:48.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:48.064 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:48.064 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:48.064 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:48.064 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:29:48.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:48.064 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:48.064 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:48.064 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:29:48.254 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:29:48.254 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:48.254 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36601 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:29:48.254 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:48.254 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166757557371783. ------
17-03-18 02:29:48.264 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:48.264 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17331 mm
17-03-18 02:29:48.264 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:48.264 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:48.264 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:29:48.264 -07 000000590 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 02:29:48.264 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 37860, sync = True, waitForSettling = False)
17-03-18 02:29:48.264 -07 000000629 INF: Z Motor: Moving to -0.173312 mm, started at -0.166758 mm, distance = -6.55 um
17-03-18 02:29:48.274 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:48.274 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:48.274 -07 000000467 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:29:48.284 -07 000000629 INF: FPGA: Xmit ZDACW 37860\n [Z Motor]
17-03-18 02:29:48.284 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:29:48.284 -07 000000590 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:48.284 -07 000000590 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:48.284 -07 000000590 INF: Y Motor: Moving 1349 steps-27
17-03-18 02:29:48.284 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:29:48.294 -07 000000629 INF: FPGA: 'ZDACW 37860' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:29:48.294 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:48.304 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:48.314 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:48.314 -07 000000561 INF: FPGA: Recv ZDACR 37860
17-03-18 02:29:48.324 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:48.324 -07 000000629 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:29:48.454 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:29:48.454 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:29:48.454 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:48.454 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:48.454 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:29:48.454 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:29:48.454 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:48.454 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:48.454 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:29:48.464 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:29:48.494 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:48.494 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 226 ms overall
17-03-18 02:29:48.674 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:29:48.674 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:29:48.724 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:48.724 -07 000000561 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:29:48.734 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:48.734 -07 000000590 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:48.734 -07 000000590 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:29:48.734 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-18 02:29:49.684 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:49.684 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:29:49.694 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:49.694 -07 000000590 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:49.714 -07 000000590 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:49.714 -07 000000590 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:49.714 -07 000000590 INF: Y Motor: Moved to 73.1763 after 1453 ms (table move)
17-03-18 02:29:49.724 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173312 mm (DAC = 37860)
17-03-18 02:29:49.724 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.724 -07 000000462 INF: FPGA: Recv ZSGSRD 36271
17-03-18 02:29:49.734 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:49.734 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.734 -07 000000579 INF: FPGA: Recv ZSGSRD 36269
17-03-18 02:29:49.744 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:49.744 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.744 -07 000000569 INF: FPGA: Recv ZSGSRD 36265
17-03-18 02:29:49.754 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:49.754 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.754 -07 000000629 INF: FPGA: Recv ZSGSRD 36270
17-03-18 02:29:49.764 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:49.774 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.774 -07 000000569 INF: FPGA: Recv ZSGSRD 36268
17-03-18 02:29:49.784 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:49.784 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.784 -07 000000461 INF: FPGA: Recv ZSGSRD 36272
17-03-18 02:29:49.794 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:49.804 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.804 -07 000000569 INF: FPGA: Recv ZSGSRD 36268
17-03-18 02:29:49.814 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:49.814 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.814 -07 000000629 INF: FPGA: Recv ZSGSRD 36268
17-03-18 02:29:49.824 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:49.844 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.844 -07 000000501 INF: FPGA: Recv ZSGSRD 36272
17-03-18 02:29:49.854 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:29:49.854 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:49.854 -07 000000461 INF: FPGA: Recv ZSGSRD 36273
17-03-18 02:29:49.864 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:49.874 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:49.874 -07 000000501 INF: FPGA: Recv ZPIEZORD 32354
17-03-18 02:29:49.884 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:49.884 -07 000000502 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.777 V. Piezo Error = -8.7 V.
17-03-18 02:29:49.884 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36270 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36270 (-172.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36265 (-172.4 uncal um), Max = 36273 (-172.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:29:49.884 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36270, posNoise = 3, negNoise = 5
17-03-18 02:29:49.884 -07 000000502 INF: Z Motor: After move to -0.173312, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:49.884 -07 000000502 INF: Z Motor: Settle wait time = 1456 ms, measure time = 159 ms (allowed 150 ms), total time = 1615 ms
17-03-18 02:29:49.884 -07 000000502 INF: Z Motor: Warning: Actual position measuring time = 159 ms, longer than max expected time of 150 ms
17-03-18 02:29:49.884 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:29:49.884 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:49.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:49.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:49.884 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:49.884 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:49.884 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:49.884 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:49.884 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:29:49.884 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:49.894 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:49.894 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:49.904 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:29:49.904 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:29:49.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:49.954 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:50.254 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:50.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:50.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:50.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:29:50.284 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:50.294 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:50.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:29:50.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:29:50.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:50.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:50.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:29:50.394 -07 000000606 INF: Autofocus start
17-03-18 02:29:50.394 -07 000000606 INF: MeasureProfile start
17-03-18 02:29:50.394 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:50.394 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:50.404 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:29:50.404 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:50.404 -07 000000606 INF: MeasureProfile done
17-03-18 02:29:50.404 -07 000000606 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:29:50.404 -07 000000606 INF: Autofocus finished
17-03-18 02:29:50.544 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.001704,
17-03-18 02:29:50.604 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:50.604 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:29:50.604 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173329526392805. ----------
17-03-18 02:29:50.604 -07 000000610 INF: Cycle	100	Tile	17	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:50.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36374, sync = True, waitForSettling = True)
17-03-18 02:29:50.614 -07 000000610 INF: Z Motor: Moving to -0.166509 mm, started at -0.173330 mm, distance = 6.82 um
17-03-18 02:29:50.614 -07 000000610 INF: FPGA: Xmit ZDACW 36374\n [Z Motor]
17-03-18 02:29:50.614 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:29:50.624 -07 000000610 INF: FPGA: 'ZDACW 36374' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:50.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:50.624 -07 000000618 INF: FPGA: Recv ZDACR 36374
17-03-18 02:29:50.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:50.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.784 -07 000000579 INF: FPGA: Recv ZSGSRD 35212
17-03-18 02:29:50.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:50.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.794 -07 000000606 INF: FPGA: Recv ZSGSRD 35203
17-03-18 02:29:50.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.804 -07 000000591 INF: FPGA: Recv ZSGSRD 35206
17-03-18 02:29:50.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.814 -07 000000455 INF: FPGA: Recv ZSGSRD 35214
17-03-18 02:29:50.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.824 -07 000000569 INF: FPGA: Recv ZSGSRD 35208
17-03-18 02:29:50.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.834 -07 000000467 INF: FPGA: Recv ZSGSRD 35209
17-03-18 02:29:50.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.844 -07 000000512 INF: FPGA: Recv ZSGSRD 35209
17-03-18 02:29:50.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.854 -07 000000590 INF: FPGA: Recv ZSGSRD 35212
17-03-18 02:29:50.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.864 -07 000000462 INF: FPGA: Recv ZSGSRD 35214
17-03-18 02:29:50.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:50.874 -07 000000618 INF: FPGA: Recv ZSGSRD 35208
17-03-18 02:29:50.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:50.884 -07 000000579 INF: FPGA: Recv ZPIEZORD 30949
17-03-18 02:29:50.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:50.894 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.4 V.
17-03-18 02:29:50.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35210 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35209 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35203 (-165.6 uncal um), Max = 35214 (-165.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:29:50.894 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35210, posNoise = 4, negNoise = 7
17-03-18 02:29:50.894 -07 000000610 INF: Z Motor: After move to -0.166509, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:50.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:29:50.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:50.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:50.894 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:50.894 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:50.894 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:50.894 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:50.894 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:50.894 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:50.894 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:50.894 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:50.894 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:50.894 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:50.904 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:50.904 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:50.904 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:29:50.904 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:50.904 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:29:50.904 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:29:50.914 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:29:50.914 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:29:50.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36551 150\n [Camera]
17-03-18 02:29:51.114 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:51.484 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:51.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:51.504 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:51.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:51.504 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:51.504 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:51.504 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:29:51.514 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:51.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:51.514 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:51.514 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:51.514 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:29:51.704 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36551 780
17-03-18 02:29:51.854 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:51.884 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:29:51.884 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:29:51.884 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:51.894 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:29:51.894 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:29:51.894 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:51.894 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:51.894 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:51.894 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:29:51.894 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:29:52.044 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:52.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:52.044 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:52.044 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:52.044 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 02:29:52.044 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:52.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:52.044 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:52.044 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:52.044 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:29:52.234 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:29:52.234 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:52.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36551 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:29:52.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:52.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166519861522538. ------
17-03-18 02:29:52.234 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:52.234 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17276 mm
17-03-18 02:29:52.234 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:52.364 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:52.364 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 02:29:52.364 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:52.364 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37738, sync = True, waitForSettling = False)
17-03-18 02:29:52.364 -07 000000502 INF: Z Motor: Moving to -0.172753 mm, started at -0.166520 mm, distance = -6.23 um
17-03-18 02:29:52.364 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:29:52.364 -07 000000606 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:29:52.374 -07 000000502 INF: FPGA: Xmit ZDACW 37738\n [Z Motor]
17-03-18 02:29:52.374 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:29:52.384 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:52.384 -07 000000502 INF: FPGA: 'ZDACW 37738' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:29:52.384 -07 000000455 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:29:52.394 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:29:52.394 -07 000000606 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:52.394 -07 000000606 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:52.394 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:52.394 -07 000000606 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:29:52.394 -07 000000591 INF: FPGA: Recv ZDACR 37738
17-03-18 02:29:52.404 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:52.404 -07 000000502 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 02:29:52.404 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:52.444 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:29:52.444 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:29:52.444 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:52.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 02:29:52.444 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:29:52.444 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:52.454 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:52.454 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:29:52.454 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:29:52.464 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:29:52.564 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:52.564 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:29:52.774 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:29:52.774 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:29:52.814 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:52.814 -07 000000591 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:29:52.824 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:29:52.824 -07 000000606 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:52.824 -07 000000606 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:29:52.824 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.187 mm/sec
17-03-18 02:29:53.774 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:53.774 -07 000000561 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:29:53.784 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:53.784 -07 000000606 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:53.804 -07 000000606 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:53.804 -07 000000606 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:53.804 -07 000000606 INF: Y Motor: Moved to 74.0083 after 1435 ms (table move)
17-03-18 02:29:53.804 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172753 mm (DAC = 37738)
17-03-18 02:29:53.804 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.804 -07 000000455 INF: FPGA: Recv ZSGSRD 36183
17-03-18 02:29:53.814 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:29:53.814 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.814 -07 000000467 INF: FPGA: Recv ZSGSRD 36181
17-03-18 02:29:53.824 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.824 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.824 -07 000000576 INF: FPGA: Recv ZSGSRD 36181
17-03-18 02:29:53.834 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.834 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.834 -07 000000579 INF: FPGA: Recv ZSGSRD 36182
17-03-18 02:29:53.844 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.844 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.844 -07 000000606 INF: FPGA: Recv ZSGSRD 36188
17-03-18 02:29:53.854 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.854 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.854 -07 000000455 INF: FPGA: Recv ZSGSRD 36187
17-03-18 02:29:53.864 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.864 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.864 -07 000000626 INF: FPGA: Recv ZSGSRD 36183
17-03-18 02:29:53.874 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.874 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.874 -07 000000591 INF: FPGA: Recv ZSGSRD 36176
17-03-18 02:29:53.884 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.884 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.884 -07 000000462 INF: FPGA: Recv ZSGSRD 36178
17-03-18 02:29:53.894 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.894 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:53.894 -07 000000444 INF: FPGA: Recv ZSGSRD 36184
17-03-18 02:29:53.904 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.904 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:53.904 -07 000000576 INF: FPGA: Recv ZPIEZORD 32247
17-03-18 02:29:53.914 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:53.914 -07 000000569 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.758 V. Piezo Error = -8.7 V.
17-03-18 02:29:53.914 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36182 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36182 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36176 (-171.8 uncal um), Max = 36188 (-171.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:29:53.914 -07 000000569 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36182, posNoise = 6, negNoise = 6
17-03-18 02:29:53.914 -07 000000569 INF: Z Motor: After move to -0.172753, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:53.914 -07 000000569 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-18 02:29:53.914 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:53.964 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1721 ms
17-03-18 02:29:53.964 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:53.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:53.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:53.964 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:53.964 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:53.964 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:53.964 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:53.964 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:53.964 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:53.974 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:53.974 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:53.974 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:29:53.974 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:29:53.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:54.024 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:29:54.324 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:29:54.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:29:54.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:54.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:29:54.364 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:54.364 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:54.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 02:29:54.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:29:54.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:54.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:54.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:29:54.464 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:54.464 -07 000000467 INF: Autofocus start
17-03-18 02:29:54.464 -07 000000467 INF: MeasureProfile start
17-03-18 02:29:54.464 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:54.474 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:29:54.474 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:54.474 -07 000000467 INF: MeasureProfile done
17-03-18 02:29:54.474 -07 000000467 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:29:54.484 -07 000000467 INF: Autofocus finished
17-03-18 02:29:54.674 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:54.674 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:29:54.674 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.17276419572433. ----------
17-03-18 02:29:54.674 -07 000000610 INF: Cycle	100	Tile	18	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:54.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36271, sync = True, waitForSettling = True)
17-03-18 02:29:54.684 -07 000000610 INF: Z Motor: Moving to -0.166038 mm, started at -0.172764 mm, distance = 6.73 um
17-03-18 02:29:54.684 -07 000000610 INF: FPGA: Xmit ZDACW 36271\n [Z Motor]
17-03-18 02:29:54.684 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:29:54.694 -07 000000610 INF: FPGA: 'ZDACW 36271' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:54.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:54.694 -07 000000629 INF: FPGA: Recv ZDACR 36271
17-03-18 02:29:54.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:54.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.854 -07 000000462 INF: FPGA: Recv ZSGSRD 35142
17-03-18 02:29:54.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.864 -07 000000629 INF: FPGA: Recv ZSGSRD 35138
17-03-18 02:29:54.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.884 -07 000000591 INF: FPGA: Recv ZSGSRD 35136
17-03-18 02:29:54.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:54.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.894 -07 000000430 INF: FPGA: Recv ZSGSRD 35139
17-03-18 02:29:54.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.904 -07 000000590 INF: FPGA: Recv ZSGSRD 35141
17-03-18 02:29:54.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.914 -07 000000444 INF: FPGA: Recv ZSGSRD 35134
17-03-18 02:29:54.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.924 -07 000000561 INF: FPGA: Recv ZSGSRD 35135
17-03-18 02:29:54.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.934 -07 000000629 INF: FPGA: Recv ZSGSRD 35134
17-03-18 02:29:54.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.944 -07 000000626 INF: FPGA: Recv ZSGSRD 35141
17-03-18 02:29:54.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:54.954 -07 000000424 INF: FPGA: Recv ZSGSRD 35127
17-03-18 02:29:54.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:54.964 -07 000000606 INF: FPGA: Recv ZPIEZORD 30871
17-03-18 02:29:54.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:54.974 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.535 V. Piezo Error = -9.4 V.
17-03-18 02:29:54.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35137 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35137 (-165.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35127 (-165.1 uncal um), Max = 35142 (-165.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:29:54.974 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35137, posNoise = 5, negNoise = 10
17-03-18 02:29:54.974 -07 000000610 INF: Z Motor: After move to -0.166038, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:54.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:29:54.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:54.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:54.974 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:54.974 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:54.974 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:54.974 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:54.974 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:54.974 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:54.974 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:29:54.974 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:54.974 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:29:54.974 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:54.984 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:29:54.984 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:54.984 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:54.984 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:54.994 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:29:54.994 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:29:54.994 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:29:54.994 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:29:54.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36448 150\n [Camera]
17-03-18 02:29:55.194 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:29:55.594 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:55.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:55.594 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:55.594 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:55.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:55.594 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:55.604 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:55.604 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:29:55.604 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:55.604 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) start.
17-03-18 02:29:55.784 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36448 780
17-03-18 02:29:55.904 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.986717,
17-03-18 02:29:55.934 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:29:55.994 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:29:55.994 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:29:55.994 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:55.994 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:55.994 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:29:56.004 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:29:56.004 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:29:56.004 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:56.004 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:56.014 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:29:56.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:29:56.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:29:56.124 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:56.124 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:29:56.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:29:56.124 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:56.134 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:56.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:29:56.134 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:56.134 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:29:56.314 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:29:56.314 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:29:56.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36448 150' command took 2 ms to send, 1316 ms to get response, and 1320 ms overall
17-03-18 02:29:56.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:29:56.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.16605089403619. ------
17-03-18 02:29:56.324 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:56.324 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17194 mm
17-03-18 02:29:56.324 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:29:56.324 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:56.324 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:29:56.324 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:29:56.454 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-18 02:29:56.454 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37561, sync = True, waitForSettling = False)
17-03-18 02:29:56.454 -07 000000590 INF: Z Motor: Moving to -0.171943 mm, started at -0.166051 mm, distance = -5.89 um
17-03-18 02:29:56.454 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:56.454 -07 000000618 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:29:56.464 -07 000000501 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:56.464 -07 000000501 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:56.464 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:29:56.464 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:29:56.464 -07 000000501 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:29:56.474 -07 000000590 INF: FPGA: Xmit ZDACW 37561\n [Z Motor]
17-03-18 02:29:56.474 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:29:56.484 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:29:56.484 -07 000000590 INF: FPGA: 'ZDACW 37561' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:29:56.484 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:29:56.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:29:56.494 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:56.494 -07 000000455 INF: FPGA: Recv ZDACR 37561
17-03-18 02:29:56.504 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:29:56.504 -07 000000590 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:29:56.534 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:29:56.534 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:29:56.534 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:56.534 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:29:56.534 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:29:56.534 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:56.534 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:29:56.544 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:29:56.544 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:29:56.544 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:29:56.664 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:29:56.664 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 02:29:56.864 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:29:56.864 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 395 ms overall
17-03-18 02:29:56.884 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:56.894 -07 000000591 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:29:56.894 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:29:56.894 -07 000000501 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:56.894 -07 000000501 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:29:56.894 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-18 02:29:57.844 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:29:57.844 -07 000000512 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:29:57.854 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:57.854 -07 000000501 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:29:57.864 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:29:57.864 -07 000000501 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:29:57.864 -07 000000501 INF: Y Motor: Moved to 74.8320 after 1541 ms (table move)
17-03-18 02:29:57.874 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171943 mm (DAC = 37561)
17-03-18 02:29:57.874 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.874 -07 000000512 INF: FPGA: Recv ZSGSRD 36058
17-03-18 02:29:57.884 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:29:57.884 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.884 -07 000000626 INF: FPGA: Recv ZSGSRD 36056
17-03-18 02:29:57.894 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.894 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.894 -07 000000618 INF: FPGA: Recv ZSGSRD 36056
17-03-18 02:29:57.904 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.904 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.904 -07 000000424 INF: FPGA: Recv ZSGSRD 36047
17-03-18 02:29:57.914 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.914 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.914 -07 000000561 INF: FPGA: Recv ZSGSRD 36054
17-03-18 02:29:57.924 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.924 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.924 -07 000000512 INF: FPGA: Recv ZSGSRD 36061
17-03-18 02:29:57.934 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.934 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.934 -07 000000467 INF: FPGA: Recv ZSGSRD 36062
17-03-18 02:29:57.944 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.944 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.944 -07 000000590 INF: FPGA: Recv ZSGSRD 36062
17-03-18 02:29:57.954 -07 000000606 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.954 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.954 -07 000000444 INF: FPGA: Recv ZSGSRD 36050
17-03-18 02:29:57.964 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.964 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:57.964 -07 000000569 INF: FPGA: Recv ZSGSRD 36055
17-03-18 02:29:57.974 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.974 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:57.974 -07 000000561 INF: FPGA: Recv ZPIEZORD 32095
17-03-18 02:29:57.984 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:57.984 -07 000000606 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.731 V. Piezo Error = -8.8 V.
17-03-18 02:29:57.984 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36056 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36056 (-171.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36047 (-171.0 uncal um), Max = 36062 (-171.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:29:57.984 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36056, posNoise = 6, negNoise = 9
17-03-18 02:29:57.984 -07 000000606 INF: Z Motor: After move to -0.171943, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:57.984 -07 000000606 INF: Z Motor: Settle wait time = 1419 ms, measure time = 109 ms (allowed 150 ms), total time = 1528 ms
17-03-18 02:29:57.984 -07 000000606 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:29:58.034 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1706 ms
17-03-18 02:29:58.034 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:29:58.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:58.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:58.034 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:58.034 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:58.034 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:29:58.034 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:58.034 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:29:58.034 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:29:58.044 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:29:58.044 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:29:58.044 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:29:58.044 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:29:58.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:29:58.094 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 02:29:58.394 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 02:29:58.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 02:29:58.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:29:58.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:29:58.434 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:29:58.434 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:29:58.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:29:58.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:29:58.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:29:58.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:29:58.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:29:58.534 -07 000000430 INF: Autofocus start
17-03-18 02:29:58.534 -07 000000430 INF: MeasureProfile start
17-03-18 02:29:58.534 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:29:58.544 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:29:58.544 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:29:58.544 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:29:58.554 -07 000000430 INF: MeasureProfile done
17-03-18 02:29:58.554 -07 000000430 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:29:58.554 -07 000000430 INF: Autofocus finished
17-03-18 02:29:58.744 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:29:58.744 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:29:58.744 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.171954744994468. ----------
17-03-18 02:29:58.744 -07 000000610 INF: Cycle	100	Tile	19	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:29:58.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36058, sync = True, waitForSettling = True)
17-03-18 02:29:58.754 -07 000000610 INF: Z Motor: Moving to -0.165063 mm, started at -0.171955 mm, distance = 6.89 um
17-03-18 02:29:58.754 -07 000000610 INF: FPGA: Xmit ZDACW 36058\n [Z Motor]
17-03-18 02:29:58.754 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:29:58.764 -07 000000610 INF: FPGA: 'ZDACW 36058' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:29:58.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:29:58.764 -07 000000455 INF: FPGA: Recv ZDACR 36058
17-03-18 02:29:58.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:58.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:29:58.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:58.924 -07 000000590 INF: FPGA: Recv ZSGSRD 34979
17-03-18 02:29:58.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:29:58.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:58.934 -07 000000467 INF: FPGA: Recv ZSGSRD 34987
17-03-18 02:29:58.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:58.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:58.944 -07 000000444 INF: FPGA: Recv ZSGSRD 34990
17-03-18 02:29:58.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:58.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:58.954 -07 000000626 INF: FPGA: Recv ZSGSRD 34986
17-03-18 02:29:58.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:58.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:58.964 -07 000000618 INF: FPGA: Recv ZSGSRD 34983
17-03-18 02:29:58.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:58.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:58.974 -07 000000462 INF: FPGA: Recv ZSGSRD 34990
17-03-18 02:29:58.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:58.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:58.984 -07 000000561 INF: FPGA: Recv ZSGSRD 34986
17-03-18 02:29:58.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:58.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:58.994 -07 000000444 INF: FPGA: Recv ZSGSRD 34984
17-03-18 02:29:59.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:59.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:59.004 -07 000000579 INF: FPGA: Recv ZSGSRD 34980
17-03-18 02:29:59.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:59.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:29:59.014 -07 000000455 INF: FPGA: Recv ZSGSRD 34989
17-03-18 02:29:59.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:59.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:29:59.024 -07 000000512 INF: FPGA: Recv ZPIEZORD 30684
17-03-18 02:29:59.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:29:59.034 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.502 V. Piezo Error = -9.5 V.
17-03-18 02:29:59.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.1 um, Read 10 ADC samples: Avg = 34985 (-164.2 uncal um), Error = 0.9 uncal um, Median = 34986 (-164.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34979 (-164.2 uncal um), Max = 34990 (-164.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:29:59.034 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34985, posNoise = 5, negNoise = 6
17-03-18 02:29:59.034 -07 000000610 INF: Z Motor: After move to -0.165063, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:29:59.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:29:59.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:29:59.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:29:59.034 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:29:59.034 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:29:59.034 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:29:59.034 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:29:59.034 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:29:59.034 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:29:59.034 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:29:59.034 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:29:59.034 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:29:59.034 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:29:59.044 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:29:59.044 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:29:59.044 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:29:59.044 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:29:59.054 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:29:59.054 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:29:59.054 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:29:59.054 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:29:59.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 36234 150\n [Camera]
17-03-18 02:29:59.254 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:29:59.654 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:29:59.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:29:59.654 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:29:59.654 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:29:59.654 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:29:59.654 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:29:59.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:29:59.654 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:29:59.654 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:29:59.654 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:29:59.844 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36234 780
17-03-18 02:29:59.994 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:00.034 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:30:00.034 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:30:00.034 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:00.034 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:30:00.034 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:30:00.034 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:00.044 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:00.044 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:00.044 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:30:00.044 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:30:00.184 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:00.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:00.184 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:00.184 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:00.194 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:30:00.194 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:00.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:00.194 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:00.194 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:00.194 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:30:00.374 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:30:00.374 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:00.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 36234 150' command took 2 ms to send, 1316 ms to get response, and 1322 ms overall
17-03-18 02:30:00.594 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:30:00.594 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:30:00.594 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:00.594 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:30:00.594 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:30:00.594 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:00.594 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:00.594 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:30:00.594 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:30:00.594 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:00.604 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:30:00.644 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:30:00.644 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:30:00.684 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:30:00.684 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:30:00.684 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:30:00.684 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 02:30:00.694 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:00.694 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:30:01.194 -07 000000424 INF: FPGA: Recv EMIN
17-03-18 02:30:01.194 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 496 ms to get response, and 506 ms overall
17-03-18 02:30:01.194 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:30:01.194 -07 000000467 INF: FPGA: Recv EMCUR 
17-03-18 02:30:01.204 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:30:01.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:01.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165074413790642. ------
17-03-18 02:30:01.204 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:01.204 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13963 mm
17-03-18 02:30:01.204 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:01.204 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:30:01.204 -07 000000424 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-18 02:30:01.204 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30502, sync = True, waitForSettling = False)
17-03-18 02:30:01.204 -07 000000606 INF: Z Motor: Moving to -0.139629 mm, started at -0.165074 mm, distance = 25.45 um
17-03-18 02:30:01.204 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:01.214 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:30:01.214 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:01.214 -07 000000576 INF: FPGA: Recv YRDPOS 153257
17-03-18 02:30:01.224 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:30:01.224 -07 000000424 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:01.224 -07 000000606 INF: FPGA: Xmit ZDACW 30502\n [Z Motor]
17-03-18 02:30:01.224 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:30:01.224 -07 000000424 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:30:01.224 -07 000000424 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:30:01.234 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:01.234 -07 000000606 INF: FPGA: 'ZDACW 30502' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:30:01.244 -07 000000424 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:30:01.254 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:01.254 -07 000000501 INF: FPGA: Recv ZDACR 30502
17-03-18 02:30:01.264 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:30:01.264 -07 000000606 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:30:01.274 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.001704,
17-03-18 02:30:01.434 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:01.434 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:30:01.484 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:01.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:02.864 -07 000000444 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 02:30:02.864 -07 000000424 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall
17-03-18 02:30:02.864 -07 000000424 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:30:02.864 -07 000000424 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:30:02.864 -07 000000424 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-18 02:30:05.714 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:05.714 -07 000000606 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:30:05.724 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:05.724 -07 000000424 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:05.754 -07 000000424 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:05.754 -07 000000424 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 02:30:05.754 -07 000000424 INF: Y Motor: Moved to 59.9106 after 4550 ms
17-03-18 02:30:05.764 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139629 mm (DAC = 30502)
17-03-18 02:30:05.764 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.764 -07 000000461 INF: FPGA: Recv ZSGSRD 31027
17-03-18 02:30:05.774 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:05.774 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.774 -07 000000626 INF: FPGA: Recv ZSGSRD 31026
17-03-18 02:30:05.784 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.784 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.784 -07 000000455 INF: FPGA: Recv ZSGSRD 31021
17-03-18 02:30:05.794 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.794 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.794 -07 000000430 INF: FPGA: Recv ZSGSRD 31027
17-03-18 02:30:05.804 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.804 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.804 -07 000000501 INF: FPGA: Recv ZSGSRD 31024
17-03-18 02:30:05.814 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.814 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.814 -07 000000467 INF: FPGA: Recv ZSGSRD 31026
17-03-18 02:30:05.824 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.824 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.824 -07 000000462 INF: FPGA: Recv ZSGSRD 31024
17-03-18 02:30:05.834 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.834 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.834 -07 000000561 INF: FPGA: Recv ZSGSRD 31030
17-03-18 02:30:05.844 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.844 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.844 -07 000000461 INF: FPGA: Recv ZSGSRD 31030
17-03-18 02:30:05.854 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.854 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:05.854 -07 000000455 INF: FPGA: Recv ZSGSRD 31026
17-03-18 02:30:05.864 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.864 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:05.864 -07 000000591 INF: FPGA: Recv ZPIEZORD 26523
17-03-18 02:30:05.874 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:05.874 -07 000000579 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.654 V. Piezo Error = -9.9 V.
17-03-18 02:30:05.874 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31026 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31026 (-138.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31021 (-138.8 uncal um), Max = 31030 (-138.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:30:05.874 -07 000000579 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31026, posNoise = 4, negNoise = 5
17-03-18 02:30:05.874 -07 000000579 INF: Z Motor: After move to -0.139629, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:05.874 -07 000000579 INF: Z Motor: Settle wait time = 4553 ms, measure time = 109 ms (allowed 150 ms), total time = 4662 ms
17-03-18 02:30:05.874 -07 000000579 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:05.924 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-18 02:30:05.924 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:05.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:05.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:05.924 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:05.924 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:05.924 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:05.924 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:05.924 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:05.924 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:30:05.954 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-18 02:30:05.954 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:05.954 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:05.954 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:05.964 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:30:05.964 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-18 02:30:05.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:06.014 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:06.314 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 02:30:06.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 02:30:06.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:06.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:30:06.354 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:06.354 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:06.354 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall
17-03-18 02:30:06.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:30:06.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:06.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:06.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:30:06.454 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:06.454 -07 000000502 INF: Image SNR check: start
17-03-18 02:30:06.464 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:06.464 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-18 02:30:06.464 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:06.474 -07 000000502 INF: Image SNR check: pass  [peak (Max-Min)=133.98]
17-03-18 02:30:06.474 -07 000000502 INF: Autofocus start
17-03-18 02:30:06.474 -07 000000502 INF: MeasureProfile start
17-03-18 02:30:06.484 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:06.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:06.484 -07 000000502 INF: MeasureProfile done
17-03-18 02:30:06.484 -07 000000502 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 02:30:06.484 -07 000000502 INF: Autofocus finished
17-03-18 02:30:06.634 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.983999,
17-03-18 02:30:06.664 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:06.664 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-18 02:30:06.674 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.13964095792141. ----------
17-03-18 02:30:06.674 -07 000000610 INF: Cycle	100	Tile	1	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:06.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28980, sync = True, waitForSettling = True)
17-03-18 02:30:06.674 -07 000000610 INF: Z Motor: Moving to -0.132662 mm, started at -0.139641 mm, distance = 6.98 um
17-03-18 02:30:06.674 -07 000000610 INF: FPGA: Xmit ZDACW 28980\n [Z Motor]
17-03-18 02:30:06.674 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:30:06.684 -07 000000610 INF: FPGA: 'ZDACW 28980' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:30:06.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:06.684 -07 000000579 INF: FPGA: Recv ZDACR 28980
17-03-18 02:30:06.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:06.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.844 -07 000000576 INF: FPGA: Recv ZSGSRD 29938
17-03-18 02:30:06.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:06.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.854 -07 000000618 INF: FPGA: Recv ZSGSRD 29944
17-03-18 02:30:06.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.864 -07 000000606 INF: FPGA: Recv ZSGSRD 29940
17-03-18 02:30:06.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.874 -07 000000561 INF: FPGA: Recv ZSGSRD 29936
17-03-18 02:30:06.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.884 -07 000000606 INF: FPGA: Recv ZSGSRD 29944
17-03-18 02:30:06.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.894 -07 000000444 INF: FPGA: Recv ZSGSRD 29939
17-03-18 02:30:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.904 -07 000000606 INF: FPGA: Recv ZSGSRD 29938
17-03-18 02:30:06.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.914 -07 000000444 INF: FPGA: Recv ZSGSRD 29940
17-03-18 02:30:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.924 -07 000000629 INF: FPGA: Recv ZSGSRD 29934
17-03-18 02:30:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:06.934 -07 000000501 INF: FPGA: Recv ZSGSRD 29945
17-03-18 02:30:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:06.944 -07 000000512 INF: FPGA: Recv ZPIEZORD 25394
17-03-18 02:30:06.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:06.954 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.422 V. Piezo Error = -10.0 V.
17-03-18 02:30:06.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29940 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29940 (-131.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29934 (-131.8 uncal um), Max = 29945 (-131.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:30:06.954 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29940, posNoise = 5, negNoise = 6
17-03-18 02:30:06.954 -07 000000610 INF: Z Motor: After move to -0.132662, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:06.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:30:06.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:06.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:06.954 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:06.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:06.954 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:06.954 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:06.954 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:06.954 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:06.954 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:06.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:06.954 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:06.954 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:30:06.964 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:30:06.964 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:06.974 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:30:06.974 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:30:06.974 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 02:30:06.974 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:06.984 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:30:06.984 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:06.994 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:30:06.994 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-18 02:30:06.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29157 150\n [Camera]
17-03-18 02:30:07.194 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:07.584 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:07.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:07.594 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:07.594 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:07.594 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:30:07.594 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:07.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:07.594 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:07.594 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:07.594 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:30:07.784 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29157 780
17-03-18 02:30:07.934 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:07.974 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:30:07.974 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:30:07.974 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:07.974 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:30:07.974 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:30:07.974 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:07.984 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:07.984 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:30:07.984 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:07.984 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:30:08.124 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:08.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:08.124 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:08.124 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:08.124 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:30:08.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:08.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:08.124 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:08.124 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:08.124 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:30:08.314 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:30:08.314 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:08.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29157 150' command took 2 ms to send, 1314 ms to get response, and 1322 ms overall
17-03-18 02:30:08.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:08.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132664263535458. ------
17-03-18 02:30:08.444 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13895 mm
17-03-18 02:30:08.444 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:08.444 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:08.444 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:08.444 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:30:08.444 -07 000000424 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 02:30:08.444 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30354, sync = True, waitForSettling = False)
17-03-18 02:30:08.444 -07 000000444 INF: Z Motor: Moving to -0.138952 mm, started at -0.132664 mm, distance = -6.29 um
17-03-18 02:30:08.454 -07 000000444 INF: FPGA: Xmit ZDACW 30354\n [Z Motor]
17-03-18 02:30:08.454 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:08.454 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:30:08.464 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:08.464 -07 000000444 INF: FPGA: 'ZDACW 30354' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:30:08.464 -07 000000606 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:30:08.474 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:08.474 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:30:08.474 -07 000000424 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:08.474 -07 000000424 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:08.474 -07 000000424 INF: Y Motor: Moving 1331 steps2
17-03-18 02:30:08.484 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:08.484 -07 000000462 INF: FPGA: Recv ZDACR 30354
17-03-18 02:30:08.494 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:08.494 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:30:08.494 -07 000000444 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:30:08.524 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:30:08.524 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:30:08.524 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:08.524 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:30:08.524 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:30:08.524 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:08.534 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:08.534 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:30:08.534 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:30:08.534 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:30:08.674 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:08.674 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:30:08.864 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:30:08.864 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:30:08.904 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:08.904 -07 000000561 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:30:08.914 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:08.914 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:08.914 -07 000000424 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:30:08.914 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 02:30:09.864 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:09.864 -07 000000444 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:30:09.874 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:09.874 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:09.894 -07 000000424 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:09.894 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:09.894 -07 000000424 INF: Y Motor: Moved to 60.7329 after 1453 ms (table move)
17-03-18 02:30:09.904 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138952 mm (DAC = 30354)
17-03-18 02:30:09.904 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.904 -07 000000430 INF: FPGA: Recv ZSGSRD 30922
17-03-18 02:30:09.914 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:09.914 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.914 -07 000000569 INF: FPGA: Recv ZSGSRD 30922
17-03-18 02:30:09.924 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:09.924 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.924 -07 000000467 INF: FPGA: Recv ZSGSRD 30925
17-03-18 02:30:09.934 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:09.934 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.934 -07 000000561 INF: FPGA: Recv ZSGSRD 30925
17-03-18 02:30:09.944 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:09.944 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.944 -07 000000461 INF: FPGA: Recv ZSGSRD 30920
17-03-18 02:30:09.954 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:09.954 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.954 -07 000000590 INF: FPGA: Recv ZSGSRD 30910
17-03-18 02:30:09.964 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:09.964 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.964 -07 000000455 INF: FPGA: Recv ZSGSRD 30931
17-03-18 02:30:09.974 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:09.974 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.974 -07 000000467 INF: FPGA: Recv ZSGSRD 30916
17-03-18 02:30:09.984 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:09.984 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.984 -07 000000606 INF: FPGA: Recv ZSGSRD 30917
17-03-18 02:30:09.994 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:09.994 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:09.994 -07 000000561 INF: FPGA: Recv ZSGSRD 30919
17-03-18 02:30:10.004 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:10.004 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:10.004 -07 000000430 INF: FPGA: Recv ZPIEZORD 26708
17-03-18 02:30:10.014 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:10.014 -07 000000502 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.3 V.
17-03-18 02:30:10.014 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30921 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30921 (-138.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30910 (-138.1 uncal um), Max = 30931 (-138.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:30:10.014 -07 000000502 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30921, posNoise = 10, negNoise = 11
17-03-18 02:30:10.014 -07 000000502 INF: Z Motor: After move to -0.138952, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:10.014 -07 000000502 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:30:10.014 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:10.064 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:30:10.064 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:10.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:10.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:10.064 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:10.064 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:10.064 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:10.064 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:10.064 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:10.064 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:10.074 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:10.074 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:10.084 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:30:10.084 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:30:10.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:10.124 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:10.424 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:10.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:10.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:10.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:30:10.464 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:10.464 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:10.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:30:10.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:30:10.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:10.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:10.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:30:10.664 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:10.664 -07 000000462 INF: Autofocus start
17-03-18 02:30:10.664 -07 000000462 INF: MeasureProfile start
17-03-18 02:30:10.664 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:10.674 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:10.674 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:10.674 -07 000000462 INF: MeasureProfile done
17-03-18 02:30:10.674 -07 000000462 INF: X=48  Z correction [um]=0.2069503
17-03-18 02:30:10.674 -07 000000462 INF: Autofocus finished
17-03-18 02:30:10.874 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:10.874 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:10.874 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138966415646526. ----------
17-03-18 02:30:10.874 -07 000000610 INF: Cycle	100	Tile	2	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:10.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28912, sync = True, waitForSettling = True)
17-03-18 02:30:10.884 -07 000000610 INF: Z Motor: Moving to -0.132351 mm, started at -0.138966 mm, distance = 6.62 um
17-03-18 02:30:10.884 -07 000000610 INF: FPGA: Xmit ZDACW 28912\n [Z Motor]
17-03-18 02:30:10.884 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:30:10.894 -07 000000610 INF: FPGA: 'ZDACW 28912' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:10.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:10.894 -07 000000579 INF: FPGA: Recv ZDACR 28912
17-03-18 02:30:10.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:10.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:11.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.054 -07 000000591 INF: FPGA: Recv ZSGSRD 29890
17-03-18 02:30:11.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:11.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.064 -07 000000501 INF: FPGA: Recv ZSGSRD 29892
17-03-18 02:30:11.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:11.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.074 -07 000000424 INF: FPGA: Recv ZSGSRD 29888
17-03-18 02:30:11.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:11.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.084 -07 000000462 INF: FPGA: Recv ZSGSRD 29890
17-03-18 02:30:11.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:11.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.094 -07 000000606 INF: FPGA: Recv ZSGSRD 29898
17-03-18 02:30:11.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:11.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.104 -07 000000512 INF: FPGA: Recv ZSGSRD 29895
17-03-18 02:30:11.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:11.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.114 -07 000000444 INF: FPGA: Recv ZSGSRD 29890
17-03-18 02:30:11.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:11.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.124 -07 000000461 INF: FPGA: Recv ZSGSRD 29892
17-03-18 02:30:11.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:11.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.134 -07 000000618 INF: FPGA: Recv ZSGSRD 29890
17-03-18 02:30:11.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:11.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:11.144 -07 000000430 INF: FPGA: Recv ZSGSRD 29895
17-03-18 02:30:11.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:11.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:11.154 -07 000000424 INF: FPGA: Recv ZPIEZORD 25359
17-03-18 02:30:11.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:11.164 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.9 V.
17-03-18 02:30:11.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29892 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29891 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29888 (-131.5 uncal um), Max = 29898 (-131.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:30:11.164 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29892, posNoise = 6, negNoise = 4
17-03-18 02:30:11.164 -07 000000610 INF: Z Motor: After move to -0.132351, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:11.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:30:11.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:11.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:11.164 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:11.164 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:11.164 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:11.164 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:11.164 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:11.164 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:11.164 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:11.164 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:11.164 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:11.164 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:11.164 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:30:11.164 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:11.174 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:30:11.174 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:11.184 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:30:11.184 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:30:11.184 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:30:11.184 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:30:11.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29089 150\n [Camera]
17-03-18 02:30:11.384 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:11.484 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:11.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:11.784 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:11.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:11.784 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:11.784 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:11.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:11.784 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:11.794 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:11.794 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:30:11.794 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:11.794 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) start.
17-03-18 02:30:11.974 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29089 780
17-03-18 02:30:11.994 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.005817,
17-03-18 02:30:12.124 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:12.184 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:30:12.184 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:30:12.184 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:12.184 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:30:12.184 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:30:12.184 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:12.184 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:12.184 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:12.184 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:30:12.194 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:30:12.314 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:12.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:12.314 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:12.314 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:12.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:12.324 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:12.334 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:12.334 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:30:12.334 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:12.334 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:30:12.504 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:30:12.504 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:12.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29089 150' command took 2 ms to send, 1308 ms to get response, and 1319 ms overall
17-03-18 02:30:12.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:12.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132355901352654. ------
17-03-18 02:30:12.514 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:12.514 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13904 mm
17-03-18 02:30:12.514 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:12.514 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:30:12.514 -07 000000606 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:30:12.514 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:12.514 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30373, sync = True, waitForSettling = False)
17-03-18 02:30:12.514 -07 000000501 INF: Z Motor: Moving to -0.139039 mm, started at -0.132356 mm, distance = -6.68 um
17-03-18 02:30:12.524 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:30:12.524 -07 000000501 INF: FPGA: Xmit ZDACW 30373\n [Z Motor]
17-03-18 02:30:12.524 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:30:12.534 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:12.534 -07 000000501 INF: FPGA: 'ZDACW 30373' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:30:12.654 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:12.654 -07 000000461 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:30:12.654 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-18 02:30:12.654 -07 000000606 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:12.664 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:12.664 -07 000000606 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:12.664 -07 000000606 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:30:12.664 -07 000000461 INF: FPGA: Recv ZDACR 30373
17-03-18 02:30:12.674 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:30:12.674 -07 000000501 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-18 02:30:12.674 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:12.734 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:30:12.734 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:30:12.734 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:12.734 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:30:12.734 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:30:12.734 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:12.734 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:12.734 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:12.734 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 02:30:12.744 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 02:30:12.854 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:12.854 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 335 ms overall
17-03-18 02:30:13.044 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:30:13.044 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:30:13.094 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:13.104 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:30:13.104 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 02:30:13.104 -07 000000606 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:13.104 -07 000000606 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:30:13.104 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.840 mm, average velocity = 2.159 mm/sec
17-03-18 02:30:14.054 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:14.054 -07 000000579 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:30:14.064 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:14.064 -07 000000606 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:14.084 -07 000000606 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:14.084 -07 000000606 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:14.084 -07 000000606 INF: Y Motor: Moved to 61.5640 after 1571 ms (table move)
17-03-18 02:30:14.094 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139039 mm (DAC = 30373)
17-03-18 02:30:14.094 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.094 -07 000000590 INF: FPGA: Recv ZSGSRD 30931
17-03-18 02:30:14.104 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:14.104 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.104 -07 000000444 INF: FPGA: Recv ZSGSRD 30938
17-03-18 02:30:14.114 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.114 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.114 -07 000000569 INF: FPGA: Recv ZSGSRD 30942
17-03-18 02:30:14.124 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.124 -07 000000502 INF: FPGA: Recv ZSGSRD 30936
17-03-18 02:30:14.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.134 -07 000000629 INF: FPGA: Recv ZSGSRD 30928
17-03-18 02:30:14.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.144 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.144 -07 000000626 INF: FPGA: Recv ZSGSRD 30929
17-03-18 02:30:14.154 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.154 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.154 -07 000000444 INF: FPGA: Recv ZSGSRD 30932
17-03-18 02:30:14.164 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.164 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.164 -07 000000591 INF: FPGA: Recv ZSGSRD 30938
17-03-18 02:30:14.174 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.174 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.174 -07 000000561 INF: FPGA: Recv ZSGSRD 30931
17-03-18 02:30:14.184 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.184 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:14.184 -07 000000606 INF: FPGA: Recv ZSGSRD 30935
17-03-18 02:30:14.194 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.194 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:14.194 -07 000000591 INF: FPGA: Recv ZPIEZORD 26780
17-03-18 02:30:14.204 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.204 -07 000000462 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.635 V. Piezo Error = -9.1 V.
17-03-18 02:30:14.204 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30934 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30934 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30928 (-138.2 uncal um), Max = 30942 (-138.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:30:14.204 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30934, posNoise = 8, negNoise = 6
17-03-18 02:30:14.204 -07 000000462 INF: Z Motor: After move to -0.139039, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:14.204 -07 000000462 INF: Z Motor: Settle wait time = 1574 ms, measure time = 108 ms (allowed 150 ms), total time = 1682 ms
17-03-18 02:30:14.204 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:14.254 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 02:30:14.254 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:14.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:14.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:14.254 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:14.254 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:14.254 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:14.254 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:14.254 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:14.254 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:14.264 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:14.264 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:14.264 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:30:14.264 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:30:14.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:14.314 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:14.614 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:14.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:14.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:14.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:30:14.654 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:14.654 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:14.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:30:14.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:30:14.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:14.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:14.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:30:14.754 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:14.754 -07 000000462 INF: Autofocus start
17-03-18 02:30:14.754 -07 000000462 INF: MeasureProfile start
17-03-18 02:30:14.754 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:14.764 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:14.764 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:14.764 -07 000000462 INF: MeasureProfile done
17-03-18 02:30:14.764 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:30:14.774 -07 000000462 INF: Autofocus finished
17-03-18 02:30:14.964 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:14.964 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-18 02:30:14.964 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139049930404368. ----------
17-03-18 02:30:14.974 -07 000000610 INF: Cycle	100	Tile	3	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:14.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28881, sync = True, waitForSettling = True)
17-03-18 02:30:14.974 -07 000000610 INF: Z Motor: Moving to -0.132209 mm, started at -0.139050 mm, distance = 6.84 um
17-03-18 02:30:14.974 -07 000000610 INF: FPGA: Xmit ZDACW 28881\n [Z Motor]
17-03-18 02:30:14.974 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:30:14.984 -07 000000610 INF: FPGA: 'ZDACW 28881' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:14.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:14.984 -07 000000590 INF: FPGA: Recv ZDACR 28881
17-03-18 02:30:14.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:14.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:15.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.144 -07 000000579 INF: FPGA: Recv ZSGSRD 29872
17-03-18 02:30:15.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:15.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.154 -07 000000569 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:30:15.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.164 -07 000000444 INF: FPGA: Recv ZSGSRD 29875
17-03-18 02:30:15.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.174 -07 000000576 INF: FPGA: Recv ZSGSRD 29872
17-03-18 02:30:15.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.184 -07 000000462 INF: FPGA: Recv ZSGSRD 29871
17-03-18 02:30:15.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.194 -07 000000424 INF: FPGA: Recv ZSGSRD 29863
17-03-18 02:30:15.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.204 -07 000000626 INF: FPGA: Recv ZSGSRD 29873
17-03-18 02:30:15.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.214 -07 000000430 INF: FPGA: Recv ZSGSRD 29868
17-03-18 02:30:15.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.224 -07 000000512 INF: FPGA: Recv ZSGSRD 29877
17-03-18 02:30:15.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:15.234 -07 000000606 INF: FPGA: Recv ZSGSRD 29869
17-03-18 02:30:15.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:15.244 -07 000000579 INF: FPGA: Recv ZPIEZORD 25399
17-03-18 02:30:15.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:15.254 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.8 V.
17-03-18 02:30:15.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29872 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29872 (-131.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29863 (-131.4 uncal um), Max = 29880 (-131.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:30:15.254 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29872, posNoise = 8, negNoise = 9
17-03-18 02:30:15.254 -07 000000610 INF: Z Motor: After move to -0.132209, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:15.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:30:15.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:15.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:15.254 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:15.254 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:15.254 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:15.254 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:15.254 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:15.254 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:15.254 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:30:15.254 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:15.254 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:15.254 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:15.264 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:30:15.264 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:15.264 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:15.264 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:15.264 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:30:15.264 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:30:15.264 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:30:15.264 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:30:15.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 29057 150\n [Camera]
17-03-18 02:30:15.474 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:15.864 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:30:15.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:30:15.864 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:15.864 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:15.874 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:30:15.874 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:30:15.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:30:15.874 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:15.874 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:15.874 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:30:16.054 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29057 780
17-03-18 02:30:16.204 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:16.264 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:30:16.264 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:30:16.264 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:16.274 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:30:16.274 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:30:16.274 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:16.274 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:16.274 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:30:16.274 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:16.284 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:30:16.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:16.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:16.404 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:16.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:16.404 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:16.404 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:16.404 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:16.404 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:16.404 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:30:16.404 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:30:16.484 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:16.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:16.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:30:16.594 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:16.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 29057 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-18 02:30:16.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:16.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132227417109818. ------
17-03-18 02:30:16.594 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:16.594 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13868 mm
17-03-18 02:30:16.594 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:16.594 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30295, sync = True, waitForSettling = False)
17-03-18 02:30:16.594 -07 000000501 INF: Z Motor: Moving to -0.138682 mm, started at -0.132227 mm, distance = -6.45 um
17-03-18 02:30:16.594 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:30:16.594 -07 000000629 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:30:16.604 -07 000000501 INF: FPGA: Xmit ZDACW 30295\n [Z Motor]
17-03-18 02:30:16.604 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:16.604 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 02:30:16.604 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:30:16.614 -07 000000501 INF: FPGA: 'ZDACW 30295' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:16.614 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:16.624 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:16.624 -07 000000461 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:30:16.634 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:30:16.634 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:16.634 -07 000000629 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:16.634 -07 000000629 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:16.634 -07 000000629 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:30:16.634 -07 000000561 INF: FPGA: Recv ZDACR 30295
17-03-18 02:30:16.644 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:30:16.644 -07 000000501 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 02:30:16.654 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:16.804 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:30:16.804 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:30:16.804 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:16.804 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:30:16.804 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:30:16.804 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:16.814 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:16.814 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:16.814 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 02:30:16.814 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:30:16.814 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:30:16.814 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:30:17.024 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:30:17.024 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:30:17.074 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:17.074 -07 000000430 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:30:17.084 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:17.084 -07 000000629 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:17.084 -07 000000629 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:30:17.084 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-18 02:30:17.354 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.988112,
17-03-18 02:30:18.034 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:18.034 -07 000000561 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:30:18.044 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.044 -07 000000629 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:18.064 -07 000000629 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:18.064 -07 000000629 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:18.064 -07 000000629 INF: Y Motor: Moved to 62.3955 after 1468 ms (table move)
17-03-18 02:30:18.074 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138682 mm (DAC = 30295)
17-03-18 02:30:18.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.074 -07 000000591 INF: FPGA: Recv ZSGSRD 30872
17-03-18 02:30:18.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:18.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.084 -07 000000561 INF: FPGA: Recv ZSGSRD 30878
17-03-18 02:30:18.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.094 -07 000000512 INF: FPGA: Recv ZSGSRD 30883
17-03-18 02:30:18.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.104 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.104 -07 000000590 INF: FPGA: Recv ZSGSRD 30881
17-03-18 02:30:18.114 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.114 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.114 -07 000000455 INF: FPGA: Recv ZSGSRD 30869
17-03-18 02:30:18.124 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.124 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.124 -07 000000579 INF: FPGA: Recv ZSGSRD 30877
17-03-18 02:30:18.134 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.134 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.134 -07 000000626 INF: FPGA: Recv ZSGSRD 30878
17-03-18 02:30:18.144 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.144 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.144 -07 000000501 INF: FPGA: Recv ZSGSRD 30876
17-03-18 02:30:18.154 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.154 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.154 -07 000000576 INF: FPGA: Recv ZSGSRD 30874
17-03-18 02:30:18.164 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.164 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:18.164 -07 000000424 INF: FPGA: Recv ZSGSRD 30883
17-03-18 02:30:18.174 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.174 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:18.174 -07 000000512 INF: FPGA: Recv ZPIEZORD 26743
17-03-18 02:30:18.184 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.184 -07 000000569 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -9.1 V.
17-03-18 02:30:18.184 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30877 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30878 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30869 (-137.8 uncal um), Max = 30883 (-137.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:30:18.184 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30877, posNoise = 6, negNoise = 8
17-03-18 02:30:18.184 -07 000000569 INF: Z Motor: After move to -0.138682, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:18.184 -07 000000569 INF: Z Motor: Settle wait time = 1472 ms, measure time = 110 ms (allowed 150 ms), total time = 1582 ms
17-03-18 02:30:18.184 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:18.224 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:30:18.224 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:18.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:18.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:18.224 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:18.224 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:18.224 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:18.224 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:18.224 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:18.224 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:18.234 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:18.234 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:18.234 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:30:18.234 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:30:18.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:18.284 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:18.584 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:18.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:18.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:18.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1186874696, 0x0, 559484976) start.
17-03-18 02:30:18.624 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:18.624 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:18.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:30:18.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1186874696, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:30:18.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:18.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:18.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:30:18.724 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:18.724 -07 000000629 INF: Autofocus start
17-03-18 02:30:18.724 -07 000000629 INF: MeasureProfile start
17-03-18 02:30:18.724 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:18.734 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:18.734 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:18.734 -07 000000629 INF: MeasureProfile done
17-03-18 02:30:18.734 -07 000000629 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:30:18.734 -07 000000629 INF: Autofocus finished
17-03-18 02:30:18.934 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:18.934 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:18.934 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138683750312288. ----------
17-03-18 02:30:18.934 -07 000000610 INF: Cycle	100	Tile	4	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:18.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28802, sync = True, waitForSettling = True)
17-03-18 02:30:18.934 -07 000000610 INF: Z Motor: Moving to -0.131847 mm, started at -0.138684 mm, distance = 6.84 um
17-03-18 02:30:18.934 -07 000000610 INF: FPGA: Xmit ZDACW 28802\n [Z Motor]
17-03-18 02:30:18.944 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:30:18.954 -07 000000610 INF: FPGA: 'ZDACW 28802' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:18.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:18.954 -07 000000618 INF: FPGA: Recv ZDACR 28802
17-03-18 02:30:18.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:18.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.114 -07 000000512 INF: FPGA: Recv ZSGSRD 29812
17-03-18 02:30:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.124 -07 000000461 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:30:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.134 -07 000000444 INF: FPGA: Recv ZSGSRD 29813
17-03-18 02:30:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.144 -07 000000590 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:30:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.154 -07 000000579 INF: FPGA: Recv ZSGSRD 29816
17-03-18 02:30:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.164 -07 000000606 INF: FPGA: Recv ZSGSRD 29816
17-03-18 02:30:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.174 -07 000000629 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:30:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.184 -07 000000501 INF: FPGA: Recv ZSGSRD 29811
17-03-18 02:30:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.194 -07 000000569 INF: FPGA: Recv ZSGSRD 29814
17-03-18 02:30:19.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:19.204 -07 000000424 INF: FPGA: Recv ZSGSRD 29810
17-03-18 02:30:19.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:19.214 -07 000000576 INF: FPGA: Recv ZPIEZORD 25325
17-03-18 02:30:19.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:19.224 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.395 V. Piezo Error = -9.8 V.
17-03-18 02:30:19.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29814 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29814 (-131.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29810 (-131.0 uncal um), Max = 29816 (-131.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:30:19.224 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29814, posNoise = 2, negNoise = 4
17-03-18 02:30:19.224 -07 000000610 INF: Z Motor: After move to -0.131847, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:19.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:30:19.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:19.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:19.224 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:19.224 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:19.224 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:19.234 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:19.234 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:19.234 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:19.234 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:19.234 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:19.234 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:30:19.234 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:19.234 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:19.234 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:19.244 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 6 ms.
17-03-18 02:30:19.244 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:19.254 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:30:19.254 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:30:19.254 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:30:19.254 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 27 ms.
17-03-18 02:30:19.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28979 150\n [Camera]
17-03-18 02:30:19.454 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:19.854 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:19.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:19.854 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:19.854 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:19.854 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:30:19.854 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:19.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:19.854 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:19.854 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:19.854 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:30:20.044 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28979 780
17-03-18 02:30:20.194 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:20.244 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:30:20.244 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:30:20.244 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:20.244 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:30:20.244 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:30:20.244 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:20.244 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:20.254 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:20.254 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:30:20.254 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:30:20.384 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:20.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:20.384 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:20.384 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:20.384 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:30:20.384 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:20.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:20.384 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:20.384 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:20.384 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:30:20.574 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:30:20.574 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:20.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28979 150' command took 2 ms to send, 1307 ms to get response, and 1320 ms overall
17-03-18 02:30:20.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:20.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131854812805596. ------
17-03-18 02:30:20.584 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:20.584 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13857 mm
17-03-18 02:30:20.584 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:20.584 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:30:20.584 -07 000000590 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:30:20.584 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:20.584 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30271, sync = True, waitForSettling = False)
17-03-18 02:30:20.584 -07 000000462 INF: Z Motor: Moving to -0.138572 mm, started at -0.131855 mm, distance = -6.72 um
17-03-18 02:30:20.594 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:20.594 -07 000000462 INF: FPGA: Xmit ZDACW 30271\n [Z Motor]
17-03-18 02:30:20.594 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:30:20.604 -07 000000462 INF: FPGA: 'ZDACW 30271' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:30:20.604 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:20.604 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:30:20.614 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:30:20.614 -07 000000590 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:20.614 -07 000000590 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:20.614 -07 000000590 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:30:20.614 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:20.624 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:20.624 -07 000000501 INF: FPGA: Recv ZDACR 30271
17-03-18 02:30:20.634 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:30:20.634 -07 000000462 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:30:20.634 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:20.784 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:30:20.784 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:30:20.784 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:20.794 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:30:20.794 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:30:20.814 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:20.814 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 02:30:20.904 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 517 ms.
17-03-18 02:30:20.904 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-18 02:30:20.904 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:20.914 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:20.914 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-18 02:30:21.014 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:30:21.014 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-18 02:30:21.054 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:21.054 -07 000000461 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:30:21.064 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:21.064 -07 000000590 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:21.064 -07 000000590 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:30:21.064 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.837 mm, average velocity = 2.093 mm/sec
17-03-18 02:30:21.484 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:21.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:22.024 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:22.024 -07 000000561 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:30:22.034 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:30:22.034 -07 000000590 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:22.064 -07 000000590 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:22.064 -07 000000590 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:22.064 -07 000000590 INF: Y Motor: Moved to 63.2241 after 1474 ms (table move)
17-03-18 02:30:22.064 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138572 mm (DAC = 30271)
17-03-18 02:30:22.074 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.074 -07 000000618 INF: FPGA: Recv ZSGSRD 30854
17-03-18 02:30:22.084 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:30:22.084 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.084 -07 000000579 INF: FPGA: Recv ZSGSRD 30857
17-03-18 02:30:22.094 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.094 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.094 -07 000000629 INF: FPGA: Recv ZSGSRD 30860
17-03-18 02:30:22.104 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.104 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.104 -07 000000512 INF: FPGA: Recv ZSGSRD 30858
17-03-18 02:30:22.114 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.114 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.114 -07 000000461 INF: FPGA: Recv ZSGSRD 30865
17-03-18 02:30:22.124 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.124 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.124 -07 000000591 INF: FPGA: Recv ZSGSRD 30870
17-03-18 02:30:22.134 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.134 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.134 -07 000000462 INF: FPGA: Recv ZSGSRD 30864
17-03-18 02:30:22.144 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.144 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.144 -07 000000629 INF: FPGA: Recv ZSGSRD 30860
17-03-18 02:30:22.154 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.154 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.154 -07 000000512 INF: FPGA: Recv ZSGSRD 30853
17-03-18 02:30:22.164 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.164 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:22.164 -07 000000579 INF: FPGA: Recv ZSGSRD 30856
17-03-18 02:30:22.174 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.174 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:22.174 -07 000000591 INF: FPGA: Recv ZPIEZORD 26712
17-03-18 02:30:22.184 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.184 -07 000000576 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.1 V.
17-03-18 02:30:22.184 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30860 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30859 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30853 (-137.7 uncal um), Max = 30870 (-137.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:30:22.184 -07 000000576 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30860, posNoise = 10, negNoise = 7
17-03-18 02:30:22.184 -07 000000576 INF: Z Motor: After move to -0.138572, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:22.184 -07 000000576 INF: Z Motor: Settle wait time = 1477 ms, measure time = 115 ms (allowed 150 ms), total time = 1592 ms
17-03-18 02:30:22.184 -07 000000576 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:22.224 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 02:30:22.224 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:22.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:22.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:22.224 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:22.224 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:22.224 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:22.224 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:22.224 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:22.224 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:22.234 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:30:22.234 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:22.244 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 02:30:22.244 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:30:22.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:22.294 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:22.594 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:22.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:22.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:22.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:30:22.624 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:22.634 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:22.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 3 ms to send, 380 ms to get response, and 386 ms overall
17-03-18 02:30:22.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:30:22.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:22.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:22.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:30:22.714 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.977204,
17-03-18 02:30:22.734 -07 000000590 INF: Autofocus start
17-03-18 02:30:22.734 -07 000000590 INF: MeasureProfile start
17-03-18 02:30:22.744 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:22.744 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:22.754 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:30:22.754 -07 000000590 INF: MeasureProfile done
17-03-18 02:30:22.754 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:30:22.754 -07 000000590 INF: Autofocus finished
17-03-18 02:30:22.764 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:22.964 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:22.964 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:30:22.964 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138574538705878. ----------
17-03-18 02:30:22.964 -07 000000610 INF: Cycle	100	Tile	5	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:22.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28778, sync = True, waitForSettling = True)
17-03-18 02:30:22.974 -07 000000610 INF: Z Motor: Moving to -0.131737 mm, started at -0.138575 mm, distance = 6.84 um
17-03-18 02:30:22.974 -07 000000610 INF: FPGA: Xmit ZDACW 28778\n [Z Motor]
17-03-18 02:30:22.974 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:30:22.984 -07 000000610 INF: FPGA: 'ZDACW 28778' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:22.984 -07 000000629 INF: FPGA: Recv ZDACR 28778
17-03-18 02:30:22.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:22.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:23.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.144 -07 000000606 INF: FPGA: Recv ZSGSRD 29804
17-03-18 02:30:23.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.154 -07 000000461 INF: FPGA: Recv ZSGSRD 29805
17-03-18 02:30:23.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.164 -07 000000606 INF: FPGA: Recv ZSGSRD 29797
17-03-18 02:30:23.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.174 -07 000000467 INF: FPGA: Recv ZSGSRD 29800
17-03-18 02:30:23.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:23.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.184 -07 000000591 INF: FPGA: Recv ZSGSRD 29800
17-03-18 02:30:23.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.194 -07 000000467 INF: FPGA: Recv ZSGSRD 29796
17-03-18 02:30:23.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.204 -07 000000591 INF: FPGA: Recv ZSGSRD 29793
17-03-18 02:30:23.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.214 -07 000000606 INF: FPGA: Recv ZSGSRD 29797
17-03-18 02:30:23.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.224 -07 000000430 INF: FPGA: Recv ZSGSRD 29808
17-03-18 02:30:23.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:23.234 -07 000000569 INF: FPGA: Recv ZSGSRD 29796
17-03-18 02:30:23.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:23.244 -07 000000467 INF: FPGA: Recv ZPIEZORD 25311
17-03-18 02:30:23.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:23.254 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.8 V.
17-03-18 02:30:23.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29800 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29793 (-130.9 uncal um), Max = 29808 (-131.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:30:23.254 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29800, posNoise = 8, negNoise = 7
17-03-18 02:30:23.254 -07 000000610 INF: Z Motor: After move to -0.131737, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:23.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:30:23.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:23.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:23.254 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:23.254 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:23.254 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:23.254 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:23.254 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:23.254 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:23.254 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:23.254 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:23.254 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:30:23.254 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:23.264 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:30:23.264 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:23.264 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:23.264 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:23.264 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:30:23.274 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:30:23.274 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:30:23.274 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:30:23.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28955 150\n [Camera]
17-03-18 02:30:23.474 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:23.874 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:30:23.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:30:23.874 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:23.874 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:30:23.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:30:23.874 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:23.874 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:23.874 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:30:23.884 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:23.884 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:30:24.064 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28955 780
17-03-18 02:30:24.204 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:24.264 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:30:24.264 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:30:24.264 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:24.274 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:30:24.274 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:30:24.274 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:24.274 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:24.274 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:30:24.274 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:24.284 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:30:24.404 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:24.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:24.404 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:24.404 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:24.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:24.404 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:24.414 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:24.414 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:30:24.414 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:24.524 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:30:24.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:30:24.594 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:24.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28955 150' command took 2 ms to send, 1312 ms to get response, and 1320 ms overall
17-03-18 02:30:24.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:24.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131764873835612. ------
17-03-18 02:30:24.594 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:24.594 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13783 mm
17-03-18 02:30:24.594 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:24.604 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30110, sync = True, waitForSettling = False)
17-03-18 02:30:24.604 -07 000000626 INF: Z Motor: Moving to -0.137835 mm, started at -0.131765 mm, distance = -6.07 um
17-03-18 02:30:24.604 -07 000000626 INF: FPGA: Xmit ZDACW 30110\n [Z Motor]
17-03-18 02:30:24.604 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:30:24.604 -07 000000461 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:30:24.604 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:24.604 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-18 02:30:24.604 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:30:24.614 -07 000000626 INF: FPGA: 'ZDACW 30110' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:24.614 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:24.624 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:24.624 -07 000000606 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:30:24.634 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:24.634 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:30:24.634 -07 000000461 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:24.634 -07 000000461 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:24.634 -07 000000461 INF: Y Motor: Moving 1342 steps-17
17-03-18 02:30:24.634 -07 000000502 INF: FPGA: Recv ZDACR 30110
17-03-18 02:30:24.644 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:30:24.644 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:24.644 -07 000000626 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:30:24.804 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:30:24.804 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:30:24.804 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:24.814 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:30:24.814 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:30:24.814 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:24.814 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 02:30:24.924 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:30:24.924 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 02:30:24.924 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:24.924 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:30:24.934 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-18 02:30:25.014 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:30:25.024 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 02:30:25.064 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:25.064 -07 000000561 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:30:25.074 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:30:25.074 -07 000000461 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:25.074 -07 000000461 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 02:30:25.074 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.838 mm, average velocity = 2.155 mm/sec
17-03-18 02:30:26.024 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:26.024 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:30:26.034 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:26.034 -07 000000461 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:26.054 -07 000000461 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:26.054 -07 000000461 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:26.054 -07 000000461 INF: Y Motor: Moved to 64.0571 after 1452 ms (table move)
17-03-18 02:30:26.064 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137835 mm (DAC = 30110)
17-03-18 02:30:26.064 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.064 -07 000000576 INF: FPGA: Recv ZSGSRD 30751
17-03-18 02:30:26.074 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.074 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.074 -07 000000444 INF: FPGA: Recv ZSGSRD 30747
17-03-18 02:30:26.084 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.084 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.084 -07 000000461 INF: FPGA: Recv ZSGSRD 30747
17-03-18 02:30:26.094 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.094 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.094 -07 000000501 INF: FPGA: Recv ZSGSRD 30736
17-03-18 02:30:26.104 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.104 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.104 -07 000000606 INF: FPGA: Recv ZSGSRD 30743
17-03-18 02:30:26.114 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.114 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.114 -07 000000430 INF: FPGA: Recv ZSGSRD 30746
17-03-18 02:30:26.124 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.124 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.124 -07 000000502 INF: FPGA: Recv ZSGSRD 30747
17-03-18 02:30:26.134 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.134 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.134 -07 000000561 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:30:26.144 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.144 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.144 -07 000000501 INF: FPGA: Recv ZSGSRD 30747
17-03-18 02:30:26.154 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.154 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:26.154 -07 000000591 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:30:26.164 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.164 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:26.164 -07 000000618 INF: FPGA: Recv ZPIEZORD 26574
17-03-18 02:30:26.174 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.174 -07 000000629 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -9.2 V.
17-03-18 02:30:26.174 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30746 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30747 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30736 (-137.0 uncal um), Max = 30751 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:30:26.174 -07 000000629 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30746, posNoise = 5, negNoise = 10
17-03-18 02:30:26.174 -07 000000629 INF: Z Motor: After move to -0.137835, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:26.174 -07 000000629 INF: Z Motor: Settle wait time = 1458 ms, measure time = 110 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:30:26.174 -07 000000629 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:26.214 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:30:26.214 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:26.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:26.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:26.214 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:26.214 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:26.214 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:26.214 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:26.214 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:26.214 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:26.224 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:26.224 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:26.224 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:30:26.224 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:30:26.234 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:26.274 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:26.484 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:26.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:26.574 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:26.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:26.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:26.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:30:26.614 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:26.614 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:26.614 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:30:26.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:30:26.694 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:26.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:26.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:30:26.714 -07 000000579 INF: Autofocus start
17-03-18 02:30:26.714 -07 000000579 INF: MeasureProfile start
17-03-18 02:30:26.714 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:26.714 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:26.724 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:26.724 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:26.724 -07 000000579 INF: MeasureProfile done
17-03-18 02:30:26.724 -07 000000579 INF: X=80  Z correction [um]=0.3608828
17-03-18 02:30:26.734 -07 000000579 INF: Autofocus finished
17-03-18 02:30:26.924 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:26.924 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:26.924 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137842178521717. ----------
17-03-18 02:30:26.924 -07 000000610 INF: Cycle	100	Tile	6	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:26.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28701, sync = True, waitForSettling = True)
17-03-18 02:30:26.934 -07 000000610 INF: Z Motor: Moving to -0.131385 mm, started at -0.137842 mm, distance = 6.46 um
17-03-18 02:30:26.934 -07 000000610 INF: FPGA: Xmit ZDACW 28701\n [Z Motor]
17-03-18 02:30:26.934 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:30:26.944 -07 000000610 INF: FPGA: 'ZDACW 28701' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:26.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:26.944 -07 000000606 INF: FPGA: Recv ZDACR 28701
17-03-18 02:30:26.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:26.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:27.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.104 -07 000000579 INF: FPGA: Recv ZSGSRD 29740
17-03-18 02:30:27.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:27.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.114 -07 000000591 INF: FPGA: Recv ZSGSRD 29744
17-03-18 02:30:27.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.124 -07 000000430 INF: FPGA: Recv ZSGSRD 29741
17-03-18 02:30:27.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.134 -07 000000561 INF: FPGA: Recv ZSGSRD 29740
17-03-18 02:30:27.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.144 -07 000000590 INF: FPGA: Recv ZSGSRD 29738
17-03-18 02:30:27.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.154 -07 000000501 INF: FPGA: Recv ZSGSRD 29741
17-03-18 02:30:27.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.164 -07 000000462 INF: FPGA: Recv ZSGSRD 29739
17-03-18 02:30:27.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.174 -07 000000618 INF: FPGA: Recv ZSGSRD 29742
17-03-18 02:30:27.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.184 -07 000000561 INF: FPGA: Recv ZSGSRD 29741
17-03-18 02:30:27.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:27.194 -07 000000576 INF: FPGA: Recv ZSGSRD 29741
17-03-18 02:30:27.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:27.204 -07 000000444 INF: FPGA: Recv ZPIEZORD 25208
17-03-18 02:30:27.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:27.214 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.9 V.
17-03-18 02:30:27.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29741 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29741 (-130.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29738 (-130.6 uncal um), Max = 29744 (-130.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:30:27.214 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29741, posNoise = 3, negNoise = 3
17-03-18 02:30:27.214 -07 000000610 INF: Z Motor: After move to -0.131385, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:27.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:30:27.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:27.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:27.214 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:27.214 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:27.214 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:27.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:27.214 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:27.214 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:27.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:27.214 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:27.214 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:27.214 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:27.224 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:27.224 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:27.224 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:30:27.224 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:27.234 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:30:27.234 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:30:27.234 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:30:27.234 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:30:27.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28878 150\n [Camera]
17-03-18 02:30:27.444 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:27.834 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:27.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:27.834 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:27.834 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:27.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:27.844 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:27.844 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:27.844 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:30:27.844 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:27.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:30:28.024 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28878 780
17-03-18 02:30:28.084 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.990831,
17-03-18 02:30:28.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:28.234 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:30:28.234 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:30:28.234 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:28.234 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:30:28.234 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:30:28.234 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:28.234 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:28.234 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:30:28.234 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:28.244 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:30:28.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:30:28.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:30:28.374 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:28.374 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:28.374 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:30:28.374 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:30:28.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:30:28.374 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:28.374 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:28.374 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:30:28.564 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:30:28.564 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:28.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28878 150' command took 2 ms to send, 1310 ms to get response, and 1320 ms overall
17-03-18 02:30:28.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:28.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131385845319248. ------
17-03-18 02:30:28.564 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:28.564 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13790 mm
17-03-18 02:30:28.564 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:28.574 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:28.574 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:30:28.574 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:30:28.574 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30123, sync = True, waitForSettling = False)
17-03-18 02:30:28.574 -07 000000424 INF: Z Motor: Moving to -0.137894 mm, started at -0.131386 mm, distance = -6.51 um
17-03-18 02:30:28.574 -07 000000424 INF: FPGA: Xmit ZDACW 30123\n [Z Motor]
17-03-18 02:30:28.574 -07 000000606 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:30:28.574 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:30:28.584 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:28.584 -07 000000424 INF: FPGA: 'ZDACW 30123' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:28.594 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:28.594 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:30:28.604 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:30:28.604 -07 000000606 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:28.604 -07 000000606 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:28.604 -07 000000606 INF: Y Motor: Moving 1337 steps-11
17-03-18 02:30:28.604 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:28.604 -07 000000576 INF: FPGA: Recv ZDACR 30123
17-03-18 02:30:28.614 -07 000000424 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:30:28.614 -07 000000424 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:30:28.614 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:28.774 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:30:28.774 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:30:28.774 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:28.774 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:30:28.774 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:30:28.774 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:28.784 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:28.784 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:30:28.784 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:28.784 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:28.784 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 213 ms overall
17-03-18 02:30:28.794 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:30:28.984 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:30:28.984 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:30:29.034 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:29.034 -07 000000561 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:30:29.044 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:29.044 -07 000000606 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:29.044 -07 000000606 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:30:29.044 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.835 mm, average velocity = 2.153 mm/sec
17-03-18 02:30:29.994 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:29.994 -07 000000461 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:30:30.004 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:30.004 -07 000000606 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:30.024 -07 000000606 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:30.024 -07 000000606 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:30.024 -07 000000606 INF: Y Motor: Moved to 64.8789 after 1456 ms (table move)
17-03-18 02:30:30.034 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137894 mm (DAC = 30123)
17-03-18 02:30:30.034 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.034 -07 000000579 INF: FPGA: Recv ZSGSRD 30749
17-03-18 02:30:30.044 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:30.044 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.044 -07 000000618 INF: FPGA: Recv ZSGSRD 30757
17-03-18 02:30:30.054 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.054 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.054 -07 000000576 INF: FPGA: Recv ZSGSRD 30761
17-03-18 02:30:30.064 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:30.064 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.064 -07 000000561 INF: FPGA: Recv ZSGSRD 30761
17-03-18 02:30:30.074 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.074 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.074 -07 000000424 INF: FPGA: Recv ZSGSRD 30751
17-03-18 02:30:30.084 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.084 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.084 -07 000000467 INF: FPGA: Recv ZSGSRD 30758
17-03-18 02:30:30.094 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.094 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.094 -07 000000629 INF: FPGA: Recv ZSGSRD 30756
17-03-18 02:30:30.104 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.104 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.104 -07 000000579 INF: FPGA: Recv ZSGSRD 30752
17-03-18 02:30:30.114 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.114 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.114 -07 000000455 INF: FPGA: Recv ZSGSRD 30753
17-03-18 02:30:30.124 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.124 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:30.124 -07 000000590 INF: FPGA: Recv ZSGSRD 30757
17-03-18 02:30:30.134 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.134 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:30.134 -07 000000591 INF: FPGA: Recv ZPIEZORD 26632
17-03-18 02:30:30.144 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.144 -07 000000430 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.1 V.
17-03-18 02:30:30.144 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30756 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30756 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30749 (-137.1 uncal um), Max = 30761 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:30:30.144 -07 000000430 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30756, posNoise = 5, negNoise = 7
17-03-18 02:30:30.144 -07 000000430 INF: Z Motor: After move to -0.137894, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:30.144 -07 000000430 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:30:30.144 -07 000000430 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:30.194 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:30:30.194 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:30.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:30.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:30.194 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:30.194 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:30.194 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:30.194 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:30.194 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:30.194 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:30.194 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:30.194 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:30.204 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:30:30.204 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:30:30.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:30.254 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:30.554 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:30.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:30.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:30.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:30:30.594 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:30.594 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:30.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 02:30:30.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:30:30.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:30.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:30.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:30:30.694 -07 000000502 INF: Autofocus start
17-03-18 02:30:30.694 -07 000000502 INF: MeasureProfile start
17-03-18 02:30:30.694 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:30.694 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:30.704 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:30.704 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:30.704 -07 000000502 INF: MeasureProfile done
17-03-18 02:30:30.704 -07 000000502 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:30:30.704 -07 000000502 INF: Autofocus finished
17-03-18 02:30:30.904 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:30.904 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:30:30.904 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137906420643135. ----------
17-03-18 02:30:30.914 -07 000000610 INF: Cycle	100	Tile	7	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:30.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28664, sync = True, waitForSettling = True)
17-03-18 02:30:30.914 -07 000000610 INF: Z Motor: Moving to -0.131215 mm, started at -0.137906 mm, distance = 6.69 um
17-03-18 02:30:30.914 -07 000000610 INF: FPGA: Xmit ZDACW 28664\n [Z Motor]
17-03-18 02:30:30.914 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:30:30.924 -07 000000610 INF: FPGA: 'ZDACW 28664' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:30:30.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:30.924 -07 000000606 INF: FPGA: Recv ZDACR 28664
17-03-18 02:30:30.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:30.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:31.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.084 -07 000000576 INF: FPGA: Recv ZSGSRD 29716
17-03-18 02:30:31.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:31.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.094 -07 000000579 INF: FPGA: Recv ZSGSRD 29717
17-03-18 02:30:31.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.104 -07 000000561 INF: FPGA: Recv ZSGSRD 29710
17-03-18 02:30:31.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.114 -07 000000444 INF: FPGA: Recv ZSGSRD 29709
17-03-18 02:30:31.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.124 -07 000000606 INF: FPGA: Recv ZSGSRD 29715
17-03-18 02:30:31.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.134 -07 000000576 INF: FPGA: Recv ZSGSRD 29719
17-03-18 02:30:31.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.144 -07 000000467 INF: FPGA: Recv ZSGSRD 29714
17-03-18 02:30:31.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.154 -07 000000591 INF: FPGA: Recv ZSGSRD 29711
17-03-18 02:30:31.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.164 -07 000000444 INF: FPGA: Recv ZSGSRD 29716
17-03-18 02:30:31.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:31.174 -07 000000629 INF: FPGA: Recv ZSGSRD 29718
17-03-18 02:30:31.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:31.184 -07 000000455 INF: FPGA: Recv ZPIEZORD 25254
17-03-18 02:30:31.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:31.194 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.8 V.
17-03-18 02:30:31.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29714 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29716 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29709 (-130.4 uncal um), Max = 29719 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:30:31.194 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29714, posNoise = 5, negNoise = 5
17-03-18 02:30:31.194 -07 000000610 INF: Z Motor: After move to -0.131215, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:31.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:30:31.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:31.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:31.194 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:31.194 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:31.194 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:31.194 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:31.194 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:31.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:31.194 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:31.194 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:31.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:31.194 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:31.204 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:31.204 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:31.204 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:31.204 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:31.214 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:30:31.214 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:30:31.214 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:30:31.214 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:30:31.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28841 150\n [Camera]
17-03-18 02:30:31.424 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:31.484 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:31.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:31.814 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:31.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:31.814 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:31.814 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:31.814 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:30:31.814 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:31.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:31.824 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:31.824 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:31.824 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:30:32.004 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28841 780
17-03-18 02:30:32.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:32.204 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:30:32.204 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:30:32.204 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:32.214 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:32.214 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:30:32.214 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:30:32.214 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:30:32.214 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:32.214 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:30:32.224 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:30:32.344 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:32.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:32.354 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:32.354 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:32.354 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 02:30:32.354 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:32.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:32.354 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:32.354 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:32.354 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:30:32.544 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:30:32.544 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:32.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28841 150' command took 2 ms to send, 1311 ms to get response, and 1320 ms overall
17-03-18 02:30:32.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:32.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.13121239159142. ------
17-03-18 02:30:32.544 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:32.544 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13787 mm
17-03-18 02:30:32.544 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:32.684 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:32.684 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 134 ms overall
17-03-18 02:30:32.684 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:30:32.684 -07 000000501 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:30:32.684 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:32.684 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 30118, sync = True, waitForSettling = False)
17-03-18 02:30:32.684 -07 000000606 INF: Z Motor: Moving to -0.137871 mm, started at -0.131212 mm, distance = -6.66 um
17-03-18 02:30:32.694 -07 000000606 INF: FPGA: Xmit ZDACW 30118\n [Z Motor]
17-03-18 02:30:32.694 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:30:32.704 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:32.704 -07 000000606 INF: FPGA: 'ZDACW 30118' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:30:32.704 -07 000000569 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:30:32.714 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:30:32.714 -07 000000501 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:32.714 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:32.714 -07 000000455 INF: FPGA: Recv ZDACR 30118
17-03-18 02:30:32.714 -07 000000501 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:32.714 -07 000000501 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:30:32.724 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:30:32.724 -07 000000606 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:30:32.724 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:32.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:30:32.754 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:30:32.754 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:32.754 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:30:32.754 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:30:32.754 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:32.754 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:32.764 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:30:32.764 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:30:32.764 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:30:32.884 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:32.884 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:33.094 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:30:33.094 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-18 02:30:33.144 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:33.144 -07 000000462 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:30:33.154 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:30:33.154 -07 000000501 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:33.154 -07 000000501 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:30:33.154 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-18 02:30:33.444 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.978563,
17-03-18 02:30:34.104 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:34.104 -07 000000606 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:30:34.114 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:34.114 -07 000000501 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:34.164 -07 000000501 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:34.164 -07 000000501 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:34.164 -07 000000501 INF: Y Motor: Moved to 65.7144 after 1483 ms (table move)
17-03-18 02:30:34.174 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137871 mm (DAC = 30118)
17-03-18 02:30:34.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.174 -07 000000430 INF: FPGA: Recv ZSGSRD 30758
17-03-18 02:30:34.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.184 -07 000000444 INF: FPGA: Recv ZSGSRD 30746
17-03-18 02:30:34.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.194 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.194 -07 000000462 INF: FPGA: Recv ZSGSRD 30744
17-03-18 02:30:34.204 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.204 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.204 -07 000000579 INF: FPGA: Recv ZSGSRD 30750
17-03-18 02:30:34.214 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.214 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.214 -07 000000561 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:30:34.224 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.224 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.224 -07 000000606 INF: FPGA: Recv ZSGSRD 30754
17-03-18 02:30:34.234 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.234 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.234 -07 000000576 INF: FPGA: Recv ZSGSRD 30753
17-03-18 02:30:34.244 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.244 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.244 -07 000000618 INF: FPGA: Recv ZSGSRD 30756
17-03-18 02:30:34.254 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.254 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.254 -07 000000512 INF: FPGA: Recv ZSGSRD 30753
17-03-18 02:30:34.264 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.264 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:34.264 -07 000000561 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:30:34.274 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.274 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:34.274 -07 000000590 INF: FPGA: Recv ZPIEZORD 26614
17-03-18 02:30:34.284 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:34.284 -07 000000591 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.1 V.
17-03-18 02:30:34.284 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30751 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30752 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30744 (-137.0 uncal um), Max = 30758 (-137.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:30:34.284 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30751, posNoise = 7, negNoise = 7
17-03-18 02:30:34.284 -07 000000591 INF: Z Motor: After move to -0.137871, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:34.284 -07 000000591 INF: Z Motor: Settle wait time = 1487 ms, measure time = 111 ms (allowed 150 ms), total time = 1598 ms
17-03-18 02:30:34.284 -07 000000591 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:34.324 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1773 ms
17-03-18 02:30:34.324 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:34.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:34.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:34.324 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:34.324 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:34.324 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:34.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:34.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:34.324 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:34.334 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:34.334 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:34.334 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:30:34.334 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:30:34.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:34.384 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:34.684 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:34.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:34.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:34.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:30:34.724 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:34.724 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:34.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:30:34.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:30:34.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:34.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:34.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:30:34.824 -07 000000502 INF: Autofocus start
17-03-18 02:30:34.824 -07 000000502 INF: MeasureProfile start
17-03-18 02:30:34.824 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:34.824 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:34.834 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:30:34.834 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:34.834 -07 000000502 INF: MeasureProfile done
17-03-18 02:30:34.834 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:30:34.834 -07 000000502 INF: Autofocus finished
17-03-18 02:30:35.034 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:35.034 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:35.034 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137874299582426. ----------
17-03-18 02:30:35.034 -07 000000610 INF: Cycle	100	Tile	8	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:35.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28613, sync = True, waitForSettling = True)
17-03-18 02:30:35.044 -07 000000610 INF: Z Motor: Moving to -0.130982 mm, started at -0.137874 mm, distance = 6.89 um
17-03-18 02:30:35.044 -07 000000610 INF: FPGA: Xmit ZDACW 28613\n [Z Motor]
17-03-18 02:30:35.044 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:30:35.054 -07 000000610 INF: FPGA: 'ZDACW 28613' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:35.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:35.054 -07 000000606 INF: FPGA: Recv ZDACR 28613
17-03-18 02:30:35.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:35.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.214 -07 000000424 INF: FPGA: Recv ZSGSRD 29685
17-03-18 02:30:35.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:35.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29676
17-03-18 02:30:35.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.234 -07 000000455 INF: FPGA: Recv ZSGSRD 29681
17-03-18 02:30:35.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.244 -07 000000579 INF: FPGA: Recv ZSGSRD 29675
17-03-18 02:30:35.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.254 -07 000000606 INF: FPGA: Recv ZSGSRD 29679
17-03-18 02:30:35.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.264 -07 000000629 INF: FPGA: Recv ZSGSRD 29683
17-03-18 02:30:35.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.274 -07 000000501 INF: FPGA: Recv ZSGSRD 29679
17-03-18 02:30:35.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.284 -07 000000618 INF: FPGA: Recv ZSGSRD 29685
17-03-18 02:30:35.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.294 -07 000000576 INF: FPGA: Recv ZSGSRD 29680
17-03-18 02:30:35.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:35.304 -07 000000569 INF: FPGA: Recv ZSGSRD 29678
17-03-18 02:30:35.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:35.314 -07 000000561 INF: FPGA: Recv ZPIEZORD 25212
17-03-18 02:30:35.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:35.324 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.8 V.
17-03-18 02:30:35.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29680 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29680 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29675 (-130.2 uncal um), Max = 29685 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:30:35.324 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29680, posNoise = 5, negNoise = 5
17-03-18 02:30:35.324 -07 000000610 INF: Z Motor: After move to -0.130982, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:35.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:30:35.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:35.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:35.324 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:35.324 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:35.324 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:35.324 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:35.324 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:35.324 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:30:35.324 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:35.324 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:35.324 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:30:35.324 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:35.334 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:30:35.334 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:35.334 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:30:35.334 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:35.344 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:30:35.344 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:30:35.344 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:30:35.344 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:30:35.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28790 150\n [Camera]
17-03-18 02:30:35.544 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:35.944 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:35.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:35.944 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:35.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:35.944 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:35.944 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:35.954 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:35.954 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) start.
17-03-18 02:30:35.954 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:35.954 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:30:36.134 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28790 780
17-03-18 02:30:36.284 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:36.344 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:30:36.344 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:30:36.344 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:36.344 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:30:36.344 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:30:36.344 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:36.354 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:36.354 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:30:36.354 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:36.354 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:30:36.474 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:30:36.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:30:36.474 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:36.474 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:30:36.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:30:36.474 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:36.484 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:36.484 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:30:36.484 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:36.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:36.484 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:36.484 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:30:36.664 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:30:36.664 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:36.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28790 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-18 02:30:36.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:36.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.1309939683786. ------
17-03-18 02:30:36.794 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:36.794 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13737 mm
17-03-18 02:30:36.794 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:36.794 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:36.794 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:30:36.794 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:30:36.794 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30008, sync = True, waitForSettling = False)
17-03-18 02:30:36.794 -07 000000618 INF: Z Motor: Moving to -0.137368 mm, started at -0.130994 mm, distance = -6.37 um
17-03-18 02:30:36.804 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:36.804 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:36.804 -07 000000576 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:30:36.814 -07 000000618 INF: FPGA: Xmit ZDACW 30008\n [Z Motor]
17-03-18 02:30:36.814 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:30:36.814 -07 000000626 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:36.814 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:36.814 -07 000000626 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:30:36.814 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:30:36.824 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:36.824 -07 000000618 INF: FPGA: 'ZDACW 30008' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:30:36.834 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:36.844 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:36.844 -07 000000569 INF: FPGA: Recv ZDACR 30008
17-03-18 02:30:36.854 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:30:36.854 -07 000000618 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:30:36.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:30:36.874 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:30:36.874 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:36.874 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:30:36.874 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:30:36.874 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:36.874 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:30:36.874 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:36.874 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:30:36.884 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:30:37.024 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:37.024 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:30:37.204 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:30:37.204 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:30:37.254 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:37.254 -07 000000618 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:30:37.264 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:37.264 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:37.264 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:30:37.264 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 02:30:38.214 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:38.214 -07 000000444 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:30:38.224 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.224 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:38.254 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:38.254 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:38.254 -07 000000626 INF: Y Motor: Moved to 66.5391 after 1455 ms (table move)
17-03-18 02:30:38.254 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137368 mm (DAC = 30008)
17-03-18 02:30:38.254 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.254 -07 000000501 INF: FPGA: Recv ZSGSRD 30674
17-03-18 02:30:38.264 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:38.264 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.264 -07 000000576 INF: FPGA: Recv ZSGSRD 30674
17-03-18 02:30:38.274 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.274 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.274 -07 000000629 INF: FPGA: Recv ZSGSRD 30674
17-03-18 02:30:38.284 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.284 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.284 -07 000000569 INF: FPGA: Recv ZSGSRD 30676
17-03-18 02:30:38.294 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.294 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.294 -07 000000591 INF: FPGA: Recv ZSGSRD 30672
17-03-18 02:30:38.304 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.304 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.304 -07 000000569 INF: FPGA: Recv ZSGSRD 30673
17-03-18 02:30:38.314 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.314 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.314 -07 000000430 INF: FPGA: Recv ZSGSRD 30669
17-03-18 02:30:38.324 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.324 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.324 -07 000000579 INF: FPGA: Recv ZSGSRD 30668
17-03-18 02:30:38.334 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.334 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.334 -07 000000512 INF: FPGA: Recv ZSGSRD 30674
17-03-18 02:30:38.344 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.344 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:38.344 -07 000000591 INF: FPGA: Recv ZSGSRD 30679
17-03-18 02:30:38.354 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.354 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:38.354 -07 000000569 INF: FPGA: Recv ZPIEZORD 26511
17-03-18 02:30:38.364 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.364 -07 000000461 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.2 V.
17-03-18 02:30:38.364 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30673 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30674 (-136.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30668 (-136.5 uncal um), Max = 30679 (-136.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:30:38.364 -07 000000461 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30673, posNoise = 6, negNoise = 5
17-03-18 02:30:38.364 -07 000000461 INF: Z Motor: After move to -0.137368, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:38.364 -07 000000461 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:30:38.364 -07 000000461 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:38.414 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:30:38.414 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:38.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:38.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:38.414 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:38.414 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:38.414 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:38.414 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:38.414 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:38.414 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:38.424 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:30:38.424 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:38.434 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:30:38.434 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:30:38.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:38.484 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:38.784 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:38.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:38.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:38.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:30:38.804 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.978563,
17-03-18 02:30:38.824 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:38.824 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:38.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 02:30:38.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:30:38.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:38.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:38.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:30:38.924 -07 000000561 INF: Autofocus start
17-03-18 02:30:38.924 -07 000000561 INF: MeasureProfile start
17-03-18 02:30:38.934 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:38.934 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:38.944 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:38.944 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:38.954 -07 000000561 INF: MeasureProfile done
17-03-18 02:30:38.954 -07 000000561 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:30:38.954 -07 000000561 INF: Autofocus finished
17-03-18 02:30:39.144 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:39.144 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:39.144 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137373211035369. ----------
17-03-18 02:30:39.154 -07 000000610 INF: Cycle	100	Tile	9	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:39.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28532, sync = True, waitForSettling = True)
17-03-18 02:30:39.154 -07 000000610 INF: Z Motor: Moving to -0.130611 mm, started at -0.137373 mm, distance = 6.76 um
17-03-18 02:30:39.154 -07 000000610 INF: FPGA: Xmit ZDACW 28532\n [Z Motor]
17-03-18 02:30:39.154 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:30:39.164 -07 000000610 INF: FPGA: 'ZDACW 28532' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:39.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:39.164 -07 000000576 INF: FPGA: Recv ZDACR 28532
17-03-18 02:30:39.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.324 -07 000000462 INF: FPGA: Recv ZSGSRD 29622
17-03-18 02:30:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.334 -07 000000629 INF: FPGA: Recv ZSGSRD 29624
17-03-18 02:30:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.344 -07 000000569 INF: FPGA: Recv ZSGSRD 29629
17-03-18 02:30:39.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.354 -07 000000455 INF: FPGA: Recv ZSGSRD 29627
17-03-18 02:30:39.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:39.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.364 -07 000000561 INF: FPGA: Recv ZSGSRD 29617
17-03-18 02:30:39.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.374 -07 000000606 INF: FPGA: Recv ZSGSRD 29628
17-03-18 02:30:39.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.384 -07 000000512 INF: FPGA: Recv ZSGSRD 29622
17-03-18 02:30:39.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.394 -07 000000502 INF: FPGA: Recv ZSGSRD 29621
17-03-18 02:30:39.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.404 -07 000000579 INF: FPGA: Recv ZSGSRD 29620
17-03-18 02:30:39.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:39.414 -07 000000629 INF: FPGA: Recv ZSGSRD 29618
17-03-18 02:30:39.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:39.424 -07 000000569 INF: FPGA: Recv ZPIEZORD 25162
17-03-18 02:30:39.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:39.434 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.8 V.
17-03-18 02:30:39.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29623 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29622 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29617 (-129.8 uncal um), Max = 29629 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:30:39.434 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29623, posNoise = 6, negNoise = 6
17-03-18 02:30:39.434 -07 000000610 INF: Z Motor: After move to -0.130611, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:39.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:30:39.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:39.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:39.434 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:39.434 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:39.434 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:39.434 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:39.434 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:39.434 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:39.434 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:39.434 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:39.434 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:39.434 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:39.434 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:30:39.434 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:39.434 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:39.434 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:39.444 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:30:39.444 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:30:39.444 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:30:39.444 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:30:39.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28709 150\n [Camera]
17-03-18 02:30:39.654 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:40.044 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:40.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:40.044 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:40.044 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:40.044 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:30:40.044 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:40.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:40.054 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:40.054 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:40.054 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:30:40.234 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28709 780
17-03-18 02:30:40.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:40.444 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:30:40.444 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:30:40.464 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:30:40.464 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:30:40.464 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:40.464 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:40.464 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:40.464 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:30:40.464 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 421 ms.
17-03-18 02:30:40.474 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 425 ms.
17-03-18 02:30:40.574 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:40.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:40.584 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:40.584 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:40.584 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:40.584 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:30:40.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:40.584 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:40.584 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:40.584 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:30:40.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:30:40.774 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:40.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28709 150' command took 2 ms to send, 1314 ms to get response, and 1323 ms overall
17-03-18 02:30:40.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:40.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.13062778828652. ------
17-03-18 02:30:40.784 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:40.784 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13745 mm
17-03-18 02:30:40.784 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:40.784 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:40.784 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30027, sync = True, waitForSettling = False)
17-03-18 02:30:40.784 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:30:40.784 -07 000000561 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:30:40.784 -07 000000576 INF: Z Motor: Moving to -0.137455 mm, started at -0.130628 mm, distance = -6.83 um
17-03-18 02:30:40.794 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:40.794 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:40.794 -07 000000502 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:30:40.804 -07 000000576 INF: FPGA: Xmit ZDACW 30027\n [Z Motor]
17-03-18 02:30:40.804 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:30:40.804 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:40.804 -07 000000561 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:40.804 -07 000000561 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:30:40.804 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:30:40.814 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:40.814 -07 000000576 INF: FPGA: 'ZDACW 30027' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:30:40.824 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:40.834 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:40.834 -07 000000629 INF: FPGA: Recv ZDACR 30027
17-03-18 02:30:40.844 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:30:40.844 -07 000000576 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:30:40.984 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:30:40.984 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:30:40.984 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:40.984 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:30:40.984 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:30:40.984 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:40.994 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:40.994 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:30:40.994 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:40.994 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:30:41.014 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:41.014 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:30:41.194 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:30:41.194 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:30:41.244 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:41.244 -07 000000455 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:30:41.254 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:41.254 -07 000000561 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:41.254 -07 000000561 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 02:30:41.254 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 02:30:41.484 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:41.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:42.204 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:42.204 -07 000000502 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:30:42.214 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.214 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:42.234 -07 000000561 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:42.234 -07 000000561 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:30:42.234 -07 000000561 INF: Y Motor: Moved to 67.3721 after 1453 ms (table move)
17-03-18 02:30:42.244 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137455 mm (DAC = 30027)
17-03-18 02:30:42.244 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.244 -07 000000501 INF: FPGA: Recv ZSGSRD 30688
17-03-18 02:30:42.254 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:42.254 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.254 -07 000000455 INF: FPGA: Recv ZSGSRD 30684
17-03-18 02:30:42.264 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.264 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.264 -07 000000590 INF: FPGA: Recv ZSGSRD 30691
17-03-18 02:30:42.274 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.274 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.274 -07 000000618 INF: FPGA: Recv ZSGSRD 30686
17-03-18 02:30:42.284 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.284 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.284 -07 000000606 INF: FPGA: Recv ZSGSRD 30689
17-03-18 02:30:42.294 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.294 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.294 -07 000000579 INF: FPGA: Recv ZSGSRD 30690
17-03-18 02:30:42.304 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.304 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.304 -07 000000461 INF: FPGA: Recv ZSGSRD 30681
17-03-18 02:30:42.314 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.314 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.314 -07 000000424 INF: FPGA: Recv ZSGSRD 30683
17-03-18 02:30:42.324 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.324 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.324 -07 000000561 INF: FPGA: Recv ZSGSRD 30687
17-03-18 02:30:42.334 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.334 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:42.334 -07 000000512 INF: FPGA: Recv ZSGSRD 30692
17-03-18 02:30:42.344 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.344 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:42.344 -07 000000462 INF: FPGA: Recv ZPIEZORD 26566
17-03-18 02:30:42.354 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:42.354 -07 000000591 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.582 V. Piezo Error = -9.1 V.
17-03-18 02:30:42.354 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30687 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30688 (-136.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30681 (-136.6 uncal um), Max = 30692 (-136.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:30:42.354 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30687, posNoise = 5, negNoise = 6
17-03-18 02:30:42.354 -07 000000591 INF: Z Motor: After move to -0.137455, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:42.354 -07 000000591 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:30:42.354 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:42.404 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:30:42.404 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:42.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:42.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:42.404 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:42.404 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:42.404 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:42.404 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:42.414 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:42.414 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:42.414 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:42.414 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:42.424 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:30:42.424 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:30:42.424 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:42.464 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:42.764 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:42.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:42.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:42.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:30:42.804 -07 000000502 INF: FPGA: Recv @CAMSNAP 382
17-03-18 02:30:42.814 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:42.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 02:30:42.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:30:42.884 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:42.884 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:30:42.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:30:42.914 -07 000000626 INF: Autofocus start
17-03-18 02:30:42.914 -07 000000626 INF: MeasureProfile start
17-03-18 02:30:42.914 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:42.914 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:42.924 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:42.924 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:42.924 -07 000000626 INF: MeasureProfile done
17-03-18 02:30:42.924 -07 000000626 INF: X=-96  Z correction [um]=-0.4707136
17-03-18 02:30:42.924 -07 000000626 INF: Autofocus finished
17-03-18 02:30:43.124 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:43.124 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:43.124 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137463150005353. ----------
17-03-18 02:30:43.124 -07 000000610 INF: Cycle	100	Tile	10	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:43.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28436, sync = True, waitForSettling = True)
17-03-18 02:30:43.134 -07 000000610 INF: Z Motor: Moving to -0.130172 mm, started at -0.137463 mm, distance = 7.29 um
17-03-18 02:30:43.134 -07 000000610 INF: FPGA: Xmit ZDACW 28436\n [Z Motor]
17-03-18 02:30:43.134 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:30:43.144 -07 000000610 INF: FPGA: 'ZDACW 28436' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:43.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:43.144 -07 000000462 INF: FPGA: Recv ZDACR 28436
17-03-18 02:30:43.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:43.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.304 -07 000000444 INF: FPGA: Recv ZSGSRD 29554
17-03-18 02:30:43.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:43.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.314 -07 000000461 INF: FPGA: Recv ZSGSRD 29555
17-03-18 02:30:43.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.324 -07 000000467 INF: FPGA: Recv ZSGSRD 29552
17-03-18 02:30:43.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.334 -07 000000512 INF: FPGA: Recv ZSGSRD 29555
17-03-18 02:30:43.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.344 -07 000000501 INF: FPGA: Recv ZSGSRD 29555
17-03-18 02:30:43.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.354 -07 000000579 INF: FPGA: Recv ZSGSRD 29549
17-03-18 02:30:43.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.364 -07 000000606 INF: FPGA: Recv ZSGSRD 29553
17-03-18 02:30:43.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.374 -07 000000462 INF: FPGA: Recv ZSGSRD 29549
17-03-18 02:30:43.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.384 -07 000000502 INF: FPGA: Recv ZSGSRD 29558
17-03-18 02:30:43.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:43.394 -07 000000591 INF: FPGA: Recv ZSGSRD 29557
17-03-18 02:30:43.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:43.404 -07 000000618 INF: FPGA: Recv ZPIEZORD 25076
17-03-18 02:30:43.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:43.414 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.8 V.
17-03-18 02:30:43.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29554 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29554 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29549 (-129.4 uncal um), Max = 29558 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:30:43.414 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29554, posNoise = 4, negNoise = 5
17-03-18 02:30:43.414 -07 000000610 INF: Z Motor: After move to -0.130172, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:43.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:30:43.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:43.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:43.414 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:43.414 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:43.414 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:43.414 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:43.414 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:43.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:43.414 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:43.414 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:43.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:43.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:43.424 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:43.424 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:43.424 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:43.424 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:43.424 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:30:43.434 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:30:43.434 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:30:43.434 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:30:43.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28613 150\n [Camera]
17-03-18 02:30:43.634 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:44.024 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:44.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:44.034 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:44.034 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:44.034 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:30:44.034 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:44.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:44.034 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:44.034 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:44.034 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:30:44.164 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.000345,
17-03-18 02:30:44.224 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28613 780
17-03-18 02:30:44.374 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:44.424 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:30:44.424 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:30:44.424 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:44.434 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:44.434 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:30:44.434 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:30:44.434 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:30:44.434 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:44.434 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:44.444 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:30:44.564 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:44.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:44.564 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:44.564 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:44.564 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:30:44.564 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:44.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:44.564 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:44.564 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:44.564 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:30:44.754 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:30:44.754 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:44.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28613 150' command took 2 ms to send, 1314 ms to get response, and 1319 ms overall
17-03-18 02:30:44.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:44.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130184517648738. ------
17-03-18 02:30:44.884 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13651 mm
17-03-18 02:30:44.884 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:44.884 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:44.884 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:30:44.884 -07 000000455 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:30:44.884 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:44.884 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29820, sync = True, waitForSettling = False)
17-03-18 02:30:44.884 -07 000000467 INF: Z Motor: Moving to -0.136507 mm, started at -0.130185 mm, distance = -6.32 um
17-03-18 02:30:44.894 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:44.894 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:44.894 -07 000000512 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:30:44.904 -07 000000467 INF: FPGA: Xmit ZDACW 29820\n [Z Motor]
17-03-18 02:30:44.904 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:30:44.904 -07 000000455 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:44.904 -07 000000455 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:44.904 -07 000000455 INF: Y Motor: Moving 1345 steps-23
17-03-18 02:30:44.904 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:30:44.914 -07 000000467 INF: FPGA: 'ZDACW 29820' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:30:44.914 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:44.924 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:44.934 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:44.934 -07 000000626 INF: FPGA: Recv ZDACR 29820
17-03-18 02:30:44.944 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:30:44.944 -07 000000467 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:30:44.954 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:30:44.964 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:30:44.964 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:44.964 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:30:44.964 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:30:44.964 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:44.964 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:44.964 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:30:44.964 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:30:44.974 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:30:45.114 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:45.114 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:30:45.294 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:30:45.294 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:30:45.344 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:45.344 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:30:45.354 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:45.354 -07 000000455 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:45.354 -07 000000455 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:30:45.354 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec
17-03-18 02:30:46.304 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:46.304 -07 000000424 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:30:46.314 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.314 -07 000000455 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:46.334 -07 000000455 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:46.334 -07 000000455 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:46.334 -07 000000455 INF: Y Motor: Moved to 68.2051 after 1451 ms (table move)
17-03-18 02:30:46.344 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136507 mm (DAC = 29820)
17-03-18 02:30:46.344 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.344 -07 000000430 INF: FPGA: Recv ZSGSRD 30539
17-03-18 02:30:46.354 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.354 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.354 -07 000000424 INF: FPGA: Recv ZSGSRD 30538
17-03-18 02:30:46.364 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.364 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.364 -07 000000502 INF: FPGA: Recv ZSGSRD 30542
17-03-18 02:30:46.374 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.374 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.374 -07 000000561 INF: FPGA: Recv ZSGSRD 30541
17-03-18 02:30:46.384 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.384 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.384 -07 000000618 INF: FPGA: Recv ZSGSRD 30535
17-03-18 02:30:46.394 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.394 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.394 -07 000000462 INF: FPGA: Recv ZSGSRD 30538
17-03-18 02:30:46.404 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.404 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.404 -07 000000444 INF: FPGA: Recv ZSGSRD 30538
17-03-18 02:30:46.414 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.414 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.414 -07 000000455 INF: FPGA: Recv ZSGSRD 30537
17-03-18 02:30:46.424 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.424 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.424 -07 000000606 INF: FPGA: Recv ZSGSRD 30540
17-03-18 02:30:46.434 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.434 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:46.434 -07 000000501 INF: FPGA: Recv ZSGSRD 30541
17-03-18 02:30:46.444 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.444 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:46.444 -07 000000569 INF: FPGA: Recv ZPIEZORD 26364
17-03-18 02:30:46.454 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:46.454 -07 000000461 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -9.2 V.
17-03-18 02:30:46.454 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30539 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30538 (-135.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30535 (-135.7 uncal um), Max = 30542 (-135.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:30:46.454 -07 000000461 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30539, posNoise = 3, negNoise = 4
17-03-18 02:30:46.454 -07 000000461 INF: Z Motor: After move to -0.136507, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:46.454 -07 000000461 INF: Z Motor: Settle wait time = 1453 ms, measure time = 110 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:30:46.454 -07 000000461 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:46.484 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:46.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:46.494 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:30:46.494 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:46.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:46.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:46.494 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:46.494 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:46.494 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:46.494 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:46.494 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:46.494 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:46.504 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:46.504 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:46.504 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:30:46.504 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:30:46.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:46.554 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:46.854 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:46.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:46.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:46.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:30:46.894 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:46.894 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:46.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:30:46.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:30:46.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:46.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:46.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:30:46.994 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:46.994 -07 000000467 INF: Autofocus start
17-03-18 02:30:46.994 -07 000000467 INF: MeasureProfile start
17-03-18 02:30:46.994 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:47.004 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:47.004 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:47.004 -07 000000467 INF: MeasureProfile done
17-03-18 02:30:47.004 -07 000000467 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:30:47.004 -07 000000467 INF: Autofocus finished
17-03-18 02:30:47.204 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:47.204 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:47.204 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136512366608373. ----------
17-03-18 02:30:47.204 -07 000000610 INF: Cycle	100	Tile	11	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:47.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28327, sync = True, waitForSettling = True)
17-03-18 02:30:47.214 -07 000000610 INF: Z Motor: Moving to -0.129673 mm, started at -0.136512 mm, distance = 6.84 um
17-03-18 02:30:47.214 -07 000000610 INF: FPGA: Xmit ZDACW 28327\n [Z Motor]
17-03-18 02:30:47.214 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:30:47.224 -07 000000610 INF: FPGA: 'ZDACW 28327' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:47.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:47.224 -07 000000626 INF: FPGA: Recv ZDACR 28327
17-03-18 02:30:47.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:47.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.384 -07 000000569 INF: FPGA: Recv ZSGSRD 29479
17-03-18 02:30:47.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:47.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.394 -07 000000501 INF: FPGA: Recv ZSGSRD 29473
17-03-18 02:30:47.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.404 -07 000000561 INF: FPGA: Recv ZSGSRD 29482
17-03-18 02:30:47.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.414 -07 000000462 INF: FPGA: Recv ZSGSRD 29481
17-03-18 02:30:47.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29480
17-03-18 02:30:47.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.434 -07 000000591 INF: FPGA: Recv ZSGSRD 29477
17-03-18 02:30:47.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.444 -07 000000501 INF: FPGA: Recv ZSGSRD 29468
17-03-18 02:30:47.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.454 -07 000000461 INF: FPGA: Recv ZSGSRD 29471
17-03-18 02:30:47.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.464 -07 000000629 INF: FPGA: Recv ZSGSRD 29477
17-03-18 02:30:47.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:47.474 -07 000000626 INF: FPGA: Recv ZSGSRD 29473
17-03-18 02:30:47.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:47.484 -07 000000444 INF: FPGA: Recv ZPIEZORD 24985
17-03-18 02:30:47.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:47.494 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.8 V.
17-03-18 02:30:47.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29476 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29477 (-128.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29468 (-128.9 uncal um), Max = 29482 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:30:47.494 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29476, posNoise = 6, negNoise = 8
17-03-18 02:30:47.494 -07 000000610 INF: Z Motor: After move to -0.129673, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:47.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:30:47.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:47.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:47.494 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:47.494 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:47.494 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:47.494 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:47.494 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:47.494 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:47.504 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:47.504 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:47.504 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:47.504 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:47.504 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:30:47.504 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:47.504 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:47.504 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:47.514 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:30:47.514 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:30:47.524 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:30:47.524 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:30:47.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28504 150\n [Camera]
17-03-18 02:30:47.724 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:48.114 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:48.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:48.114 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:48.124 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:48.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:48.124 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:48.124 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:48.124 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:30:48.134 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:48.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) start.
17-03-18 02:30:48.314 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28504 782
17-03-18 02:30:48.454 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:48.524 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:30:48.524 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:30:48.524 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:48.524 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:30:48.524 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:30:48.524 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:48.524 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:48.524 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:30:48.524 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:48.534 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:30:48.654 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:48.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:48.654 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:48.654 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:48.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:48.654 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:48.664 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:48.664 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:30:48.664 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:48.664 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:30:48.844 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:30:48.844 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:48.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28504 150' command took 2 ms to send, 1312 ms to get response, and 1319 ms overall
17-03-18 02:30:48.844 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:48.844 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129683429101681. ------
17-03-18 02:30:48.844 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13640 mm
17-03-18 02:30:48.844 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:48.974 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:48.974 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:30:48.974 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 02:30:48.974 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29797, sync = True, waitForSettling = False)
17-03-18 02:30:48.974 -07 000000591 INF: Z Motor: Moving to -0.136402 mm, started at -0.129683 mm, distance = -6.72 um
17-03-18 02:30:48.974 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:48.984 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-18 02:30:48.994 -07 000000591 INF: FPGA: Xmit ZDACW 29797\n [Z Motor]
17-03-18 02:30:48.994 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:30:49.004 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:49.004 -07 000000591 INF: FPGA: 'ZDACW 29797' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:30:49.004 -07 000000462 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:30:49.014 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:49.014 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 02:30:49.014 -07 000000618 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:49.014 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:49.014 -07 000000618 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:30:49.034 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:49.034 -07 000000462 INF: FPGA: Recv ZDACR 29797
17-03-18 02:30:49.044 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:49.044 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:30:49.044 -07 000000591 INF: Z Motor: MoveAbsStepped took 64 ms (did NOT wait for settling yet))
17-03-18 02:30:49.054 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:30:49.064 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:30:49.064 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:49.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:30:49.064 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:30:49.064 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:49.064 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:30:49.064 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:30:49.064 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:30:49.074 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 02:30:49.214 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:49.214 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 02:30:49.414 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:30:49.414 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 403 ms overall
17-03-18 02:30:49.464 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:49.464 -07 000000455 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:30:49.474 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:49.474 -07 000000618 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:49.474 -07 000000618 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:30:49.474 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.838 mm, average velocity = 2.078 mm/sec
17-03-18 02:30:49.524 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.99219,
17-03-18 02:30:50.424 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:50.424 -07 000000569 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:30:50.434 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:50.434 -07 000000618 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:50.454 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:50.454 -07 000000618 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:50.454 -07 000000618 INF: Y Motor: Moved to 69.0273 after 1483 ms (table move)
17-03-18 02:30:50.464 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136402 mm (DAC = 29797)
17-03-18 02:30:50.464 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.464 -07 000000606 INF: FPGA: Recv ZSGSRD 30521
17-03-18 02:30:50.474 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:50.474 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.474 -07 000000629 INF: FPGA: Recv ZSGSRD 30521
17-03-18 02:30:50.484 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.484 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.484 -07 000000569 INF: FPGA: Recv ZSGSRD 30529
17-03-18 02:30:50.494 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.494 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.494 -07 000000430 INF: FPGA: Recv ZSGSRD 30527
17-03-18 02:30:50.504 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.504 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.504 -07 000000512 INF: FPGA: Recv ZSGSRD 30521
17-03-18 02:30:50.514 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.514 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.514 -07 000000618 INF: FPGA: Recv ZSGSRD 30521
17-03-18 02:30:50.524 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.524 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.524 -07 000000590 INF: FPGA: Recv ZSGSRD 30517
17-03-18 02:30:50.534 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.534 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.534 -07 000000579 INF: FPGA: Recv ZSGSRD 30521
17-03-18 02:30:50.544 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.544 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.544 -07 000000501 INF: FPGA: Recv ZSGSRD 30514
17-03-18 02:30:50.554 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.554 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:50.554 -07 000000444 INF: FPGA: Recv ZSGSRD 30525
17-03-18 02:30:50.564 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.564 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:50.564 -07 000000618 INF: FPGA: Recv ZPIEZORD 26388
17-03-18 02:30:50.574 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:50.574 -07 000000561 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.1 V.
17-03-18 02:30:50.574 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30522 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30521 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30514 (-135.6 uncal um), Max = 30529 (-135.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:30:50.574 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30522, posNoise = 7, negNoise = 8
17-03-18 02:30:50.574 -07 000000561 INF: Z Motor: After move to -0.136402, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:50.574 -07 000000561 INF: Z Motor: Settle wait time = 1486 ms, measure time = 109 ms (allowed 150 ms), total time = 1595 ms
17-03-18 02:30:50.574 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:50.624 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1771 ms
17-03-18 02:30:50.624 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:50.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:50.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:50.624 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:50.624 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:50.624 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:50.624 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:50.624 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:50.624 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:50.634 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:50.634 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:50.634 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:30:50.634 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:30:50.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:50.684 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:50.984 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:50.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:50.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:50.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:30:51.024 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:51.024 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:51.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 02:30:51.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:30:51.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:51.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:51.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:30:51.124 -07 000000512 INF: Autofocus start
17-03-18 02:30:51.124 -07 000000512 INF: MeasureProfile start
17-03-18 02:30:51.124 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:51.124 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:51.134 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:51.134 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:51.134 -07 000000512 INF: MeasureProfile done
17-03-18 02:30:51.134 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:30:51.134 -07 000000512 INF: Autofocus finished
17-03-18 02:30:51.334 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:51.334 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:51.334 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136403155001963. ----------
17-03-18 02:30:51.334 -07 000000610 INF: Cycle	100	Tile	12	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:51.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28304, sync = True, waitForSettling = True)
17-03-18 02:30:51.344 -07 000000610 INF: Z Motor: Moving to -0.129567 mm, started at -0.136403 mm, distance = 6.84 um
17-03-18 02:30:51.344 -07 000000610 INF: FPGA: Xmit ZDACW 28304\n [Z Motor]
17-03-18 02:30:51.344 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:30:51.354 -07 000000610 INF: FPGA: 'ZDACW 28304' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:51.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:51.354 -07 000000561 INF: FPGA: Recv ZDACR 28304
17-03-18 02:30:51.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:51.484 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:51.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:51.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29461
17-03-18 02:30:51.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:51.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.524 -07 000000467 INF: FPGA: Recv ZSGSRD 29464
17-03-18 02:30:51.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.534 -07 000000569 INF: FPGA: Recv ZSGSRD 29461
17-03-18 02:30:51.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.544 -07 000000629 INF: FPGA: Recv ZSGSRD 29459
17-03-18 02:30:51.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.554 -07 000000618 INF: FPGA: Recv ZSGSRD 29453
17-03-18 02:30:51.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.564 -07 000000576 INF: FPGA: Recv ZSGSRD 29455
17-03-18 02:30:51.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.574 -07 000000512 INF: FPGA: Recv ZSGSRD 29459
17-03-18 02:30:51.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.584 -07 000000461 INF: FPGA: Recv ZSGSRD 29462
17-03-18 02:30:51.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.594 -07 000000455 INF: FPGA: Recv ZSGSRD 29461
17-03-18 02:30:51.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:51.604 -07 000000569 INF: FPGA: Recv ZSGSRD 29454
17-03-18 02:30:51.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:51.614 -07 000000430 INF: FPGA: Recv ZPIEZORD 24965
17-03-18 02:30:51.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:51.624 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.9 V.
17-03-18 02:30:51.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29459 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29460 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29453 (-128.8 uncal um), Max = 29464 (-128.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:30:51.624 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29459, posNoise = 5, negNoise = 6
17-03-18 02:30:51.624 -07 000000610 INF: Z Motor: After move to -0.129567, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:51.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:30:51.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:51.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:51.624 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:51.624 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:51.624 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:51.624 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:51.624 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:51.624 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:51.624 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:51.624 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:51.624 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:51.624 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:51.634 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:51.634 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:51.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:30:51.634 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:51.644 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:30:51.644 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:30:51.644 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:30:51.644 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:30:51.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28481 150\n [Camera]
17-03-18 02:30:51.844 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:52.234 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:52.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:52.234 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:52.234 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:52.234 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:30:52.244 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:52.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:52.244 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:52.244 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:52.244 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:30:52.434 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28481 780
17-03-18 02:30:52.584 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:52.634 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:30:52.634 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:30:52.634 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:52.644 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:52.644 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:30:52.644 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:30:52.644 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:30:52.644 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:52.644 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:52.654 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:30:52.774 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:52.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:52.774 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:52.774 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:52.774 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:30:52.774 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:52.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:52.774 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:52.774 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:52.774 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:30:52.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:30:52.964 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:52.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28481 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:30:52.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:52.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129574217495271. ------
17-03-18 02:30:52.964 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:52.964 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13597 mm
17-03-18 02:30:52.964 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:52.974 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:52.974 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 02:30:52.974 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:52.974 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:30:52.974 -07 000000591 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:30:52.974 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29702, sync = True, waitForSettling = False)
17-03-18 02:30:52.974 -07 000000606 INF: Z Motor: Moving to -0.135967 mm, started at -0.129574 mm, distance = -6.39 um
17-03-18 02:30:52.984 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:52.984 -07 000000467 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:30:52.994 -07 000000606 INF: FPGA: Xmit ZDACW 29702\n [Z Motor]
17-03-18 02:30:52.994 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:30:52.994 -07 000000591 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:52.994 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:30:52.994 -07 000000591 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:52.994 -07 000000591 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:30:53.004 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:53.004 -07 000000606 INF: FPGA: 'ZDACW 29702' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:30:53.014 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:53.014 -07 000000430 INF: FPGA: Recv ZDACR 29702
17-03-18 02:30:53.024 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:30:53.024 -07 000000606 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:30:53.174 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:30:53.174 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:30:53.174 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:53.174 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:53.174 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:30:53.174 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:30:53.174 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:30:53.174 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:53.184 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:30:53.184 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:30:53.184 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:30:53.184 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:30:53.374 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:30:53.374 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:30:53.424 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:53.424 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:30:53.434 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:30:53.434 -07 000000591 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:53.434 -07 000000591 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:30:53.434 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 02:30:54.384 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:54.384 -07 000000561 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:30:54.394 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:54.394 -07 000000591 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:54.414 -07 000000591 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:54.414 -07 000000591 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:54.414 -07 000000591 INF: Y Motor: Moved to 69.8633 after 1445 ms (table move)
17-03-18 02:30:54.424 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135967 mm (DAC = 29702)
17-03-18 02:30:54.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.424 -07 000000561 INF: FPGA: Recv ZSGSRD 30457
17-03-18 02:30:54.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:54.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.434 -07 000000461 INF: FPGA: Recv ZSGSRD 30464
17-03-18 02:30:54.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:54.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.444 -07 000000590 INF: FPGA: Recv ZSGSRD 30455
17-03-18 02:30:54.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:54.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.454 -07 000000629 INF: FPGA: Recv ZSGSRD 30458
17-03-18 02:30:54.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:54.464 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.464 -07 000000591 INF: FPGA: Recv ZSGSRD 30454
17-03-18 02:30:54.474 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:54.474 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.474 -07 000000618 INF: FPGA: Recv ZSGSRD 30454
17-03-18 02:30:54.484 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:54.484 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.484 -07 000000579 INF: FPGA: Recv ZSGSRD 30454
17-03-18 02:30:54.494 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:54.494 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.494 -07 000000561 INF: FPGA: Recv ZSGSRD 30456
17-03-18 02:30:54.504 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:54.504 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.504 -07 000000462 INF: FPGA: Recv ZSGSRD 30451
17-03-18 02:30:54.514 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:54.514 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:54.514 -07 000000618 INF: FPGA: Recv ZSGSRD 30454
17-03-18 02:30:54.524 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:54.524 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:54.524 -07 000000512 INF: FPGA: Recv ZPIEZORD 26337
17-03-18 02:30:54.534 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:54.534 -07 000000455 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.532 V. Piezo Error = -9.1 V.
17-03-18 02:30:54.534 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30456 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30454 (-135.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30451 (-135.2 uncal um), Max = 30464 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:30:54.534 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30456, posNoise = 8, negNoise = 5
17-03-18 02:30:54.534 -07 000000455 INF: Z Motor: After move to -0.135967, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:54.534 -07 000000455 INF: Z Motor: Settle wait time = 1447 ms, measure time = 108 ms (allowed 150 ms), total time = 1555 ms
17-03-18 02:30:54.534 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:54.584 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:30:54.584 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:54.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:54.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:54.584 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:54.584 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:54.584 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:54.584 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:54.584 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:54.584 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:54.594 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:54.594 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:54.594 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:30:54.594 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:30:54.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:54.644 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:54.884 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.981281,
17-03-18 02:30:54.944 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:54.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:54.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:54.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1186874696, 0x0, 559484976) start.
17-03-18 02:30:54.984 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:54.984 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:54.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 02:30:55.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1186874696, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:30:55.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:55.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:55.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:30:55.084 -07 000000606 INF: Autofocus start
17-03-18 02:30:55.084 -07 000000606 INF: MeasureProfile start
17-03-18 02:30:55.084 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:55.084 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:55.094 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:30:55.094 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:55.094 -07 000000606 INF: MeasureProfile done
17-03-18 02:30:55.094 -07 000000606 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:30:55.094 -07 000000606 INF: Autofocus finished
17-03-18 02:30:55.294 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:55.294 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:30:55.294 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.135979157000607. ----------
17-03-18 02:30:55.294 -07 000000610 INF: Cycle	100	Tile	13	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:55.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28243, sync = True, waitForSettling = True)
17-03-18 02:30:55.304 -07 000000610 INF: Z Motor: Moving to -0.129288 mm, started at -0.135979 mm, distance = 6.69 um
17-03-18 02:30:55.304 -07 000000610 INF: FPGA: Xmit ZDACW 28243\n [Z Motor]
17-03-18 02:30:55.304 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:30:55.314 -07 000000610 INF: FPGA: 'ZDACW 28243' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:30:55.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:55.314 -07 000000430 INF: FPGA: Recv ZDACR 28243
17-03-18 02:30:55.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:55.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.474 -07 000000512 INF: FPGA: Recv ZSGSRD 29421
17-03-18 02:30:55.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.484 -07 000000626 INF: FPGA: Recv ZSGSRD 29421
17-03-18 02:30:55.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.494 -07 000000561 INF: FPGA: Recv ZSGSRD 29410
17-03-18 02:30:55.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.504 -07 000000455 INF: FPGA: Recv ZSGSRD 29412
17-03-18 02:30:55.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.514 -07 000000430 INF: FPGA: Recv ZSGSRD 29413
17-03-18 02:30:55.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.524 -07 000000461 INF: FPGA: Recv ZSGSRD 29418
17-03-18 02:30:55.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.534 -07 000000576 INF: FPGA: Recv ZSGSRD 29419
17-03-18 02:30:55.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.544 -07 000000462 INF: FPGA: Recv ZSGSRD 29413
17-03-18 02:30:55.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.554 -07 000000455 INF: FPGA: Recv ZSGSRD 29414
17-03-18 02:30:55.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:55.564 -07 000000606 INF: FPGA: Recv ZSGSRD 29414
17-03-18 02:30:55.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:55.574 -07 000000590 INF: FPGA: Recv ZPIEZORD 24964
17-03-18 02:30:55.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:55.584 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.8 V.
17-03-18 02:30:55.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29416 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29414 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29410 (-128.5 uncal um), Max = 29421 (-128.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:30:55.584 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29416, posNoise = 5, negNoise = 6
17-03-18 02:30:55.584 -07 000000610 INF: Z Motor: After move to -0.129288, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:55.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:30:55.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:55.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:55.584 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:55.584 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:55.584 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:55.584 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:55.584 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:55.584 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:55.584 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:55.584 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:55.584 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:30:55.584 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:55.594 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:30:55.594 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:55.594 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:55.594 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:55.604 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:30:55.604 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:30:55.604 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:30:55.604 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:30:55.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28420 150\n [Camera]
17-03-18 02:30:55.804 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:30:56.204 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:30:56.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:30:56.204 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:56.204 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:56.204 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:30:56.204 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:30:56.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:30:56.204 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:56.204 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:56.204 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:30:56.394 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28420 780
17-03-18 02:30:56.484 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:30:56.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:30:56.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:30:56.594 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:30:56.594 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:30:56.594 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:56.594 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:30:56.594 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:30:56.594 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:56.594 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:56.604 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:30:56.604 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:30:56.614 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:30:56.734 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:30:56.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:30:56.734 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:30:56.734 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:30:56.734 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:30:56.734 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:30:56.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:30:56.734 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:30:56.734 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:30:56.734 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:30:56.924 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:30:56.924 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:30:56.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28420 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:30:56.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:30:56.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129297976373175. ------
17-03-18 02:30:56.934 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:56.934 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13573 mm
17-03-18 02:30:56.934 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:30:57.054 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:57.054 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 02:30:57.054 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29649, sync = True, waitForSettling = False)
17-03-18 02:30:57.054 -07 000000444 INF: Z Motor: Moving to -0.135724 mm, started at -0.129298 mm, distance = -6.43 um
17-03-18 02:30:57.054 -07 000000444 INF: FPGA: Xmit ZDACW 29649\n [Z Motor]
17-03-18 02:30:57.054 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:30:57.054 -07 000000569 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:30:57.064 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:30:57.064 -07 000000444 INF: FPGA: 'ZDACW 29649' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:30:57.064 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:57.064 -07 000000501 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:30:57.074 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:30:57.074 -07 000000569 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:57.074 -07 000000569 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:30:57.074 -07 000000569 INF: Y Motor: Moving 1343 steps-19
17-03-18 02:30:57.074 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:30:57.084 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:57.084 -07 000000501 INF: FPGA: Recv ZDACR 29649
17-03-18 02:30:57.094 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:30:57.094 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:30:57.094 -07 000000444 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 02:30:57.124 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:30:57.124 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:30:57.124 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:57.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:30:57.134 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:30:57.134 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:30:57.134 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:57.134 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:30:57.134 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:30:57.134 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:30:57.274 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:30:57.274 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 216 ms overall
17-03-18 02:30:57.464 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:30:57.464 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:30:57.514 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:57.514 -07 000000606 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:30:57.524 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:30:57.524 -07 000000569 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:57.524 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:30:57.524 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-18 02:30:58.474 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:30:58.474 -07 000000591 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:30:58.484 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:58.484 -07 000000569 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:30:58.504 -07 000000569 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:30:58.504 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:30:58.504 -07 000000569 INF: Y Motor: Moved to 70.6885 after 1450 ms (table move)
17-03-18 02:30:58.514 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135724 mm (DAC = 29649)
17-03-18 02:30:58.514 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.514 -07 000000467 INF: FPGA: Recv ZSGSRD 30420
17-03-18 02:30:58.524 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:58.524 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.524 -07 000000462 INF: FPGA: Recv ZSGSRD 30422
17-03-18 02:30:58.534 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.534 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.534 -07 000000626 INF: FPGA: Recv ZSGSRD 30421
17-03-18 02:30:58.544 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.544 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.544 -07 000000579 INF: FPGA: Recv ZSGSRD 30420
17-03-18 02:30:58.554 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.554 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.554 -07 000000424 INF: FPGA: Recv ZSGSRD 30421
17-03-18 02:30:58.564 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.564 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.564 -07 000000444 INF: FPGA: Recv ZSGSRD 30421
17-03-18 02:30:58.574 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.574 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.574 -07 000000424 INF: FPGA: Recv ZSGSRD 30416
17-03-18 02:30:58.584 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.584 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.584 -07 000000467 INF: FPGA: Recv ZSGSRD 30416
17-03-18 02:30:58.594 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.594 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.594 -07 000000461 INF: FPGA: Recv ZSGSRD 30418
17-03-18 02:30:58.604 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.604 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:58.604 -07 000000444 INF: FPGA: Recv ZSGSRD 30420
17-03-18 02:30:58.614 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.614 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:58.614 -07 000000501 INF: FPGA: Recv ZPIEZORD 26292
17-03-18 02:30:58.624 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:58.624 -07 000000590 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.524 V. Piezo Error = -9.1 V.
17-03-18 02:30:58.624 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30420 (-135.0 uncal um), Error = 0.8 uncal um, Median = 30420 (-135.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30416 (-134.9 uncal um), Max = 30422 (-135.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:30:58.624 -07 000000590 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30420, posNoise = 2, negNoise = 4
17-03-18 02:30:58.624 -07 000000590 INF: Z Motor: After move to -0.135724, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:58.624 -07 000000590 INF: Z Motor: Settle wait time = 1455 ms, measure time = 110 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:30:58.624 -07 000000590 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:30:58.664 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-18 02:30:58.664 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:30:58.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:58.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:58.664 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:58.664 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:58.664 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:30:58.664 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:58.664 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:30:58.664 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:30:58.674 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:30:58.674 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:30:58.674 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:30:58.674 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:30:58.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:30:58.724 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:30:59.024 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:30:59.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:30:59.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:30:59.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:30:59.064 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:30:59.064 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:30:59.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:30:59.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:30:59.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:30:59.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:30:59.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:30:59.164 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:30:59.164 -07 000000430 INF: Autofocus start
17-03-18 02:30:59.164 -07 000000430 INF: MeasureProfile start
17-03-18 02:30:59.164 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:30:59.174 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:30:59.174 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:30:59.174 -07 000000430 INF: MeasureProfile done
17-03-18 02:30:59.174 -07 000000430 INF: X=-64  Z correction [um]=-0.3149434
17-03-18 02:30:59.174 -07 000000430 INF: Autofocus finished
17-03-18 02:30:59.374 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:30:59.374 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:30:59.374 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135747885363503. ----------
17-03-18 02:30:59.374 -07 000000610 INF: Cycle	100	Tile	14	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:30:59.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28093, sync = True, waitForSettling = True)
17-03-18 02:30:59.384 -07 000000610 INF: Z Motor: Moving to -0.128602 mm, started at -0.135748 mm, distance = 7.15 um
17-03-18 02:30:59.384 -07 000000610 INF: FPGA: Xmit ZDACW 28093\n [Z Motor]
17-03-18 02:30:59.384 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:30:59.394 -07 000000610 INF: FPGA: 'ZDACW 28093' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:30:59.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:30:59.394 -07 000000618 INF: FPGA: Recv ZDACR 28093
17-03-18 02:30:59.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:30:59.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.554 -07 000000579 INF: FPGA: Recv ZSGSRD 29312
17-03-18 02:30:59.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:30:59.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.564 -07 000000501 INF: FPGA: Recv ZSGSRD 29306
17-03-18 02:30:59.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.574 -07 000000569 INF: FPGA: Recv ZSGSRD 29307
17-03-18 02:30:59.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.584 -07 000000462 INF: FPGA: Recv ZSGSRD 29311
17-03-18 02:30:59.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.594 -07 000000467 INF: FPGA: Recv ZSGSRD 29307
17-03-18 02:30:59.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.604 -07 000000424 INF: FPGA: Recv ZSGSRD 29309
17-03-18 02:30:59.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.614 -07 000000455 INF: FPGA: Recv ZSGSRD 29308
17-03-18 02:30:59.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.624 -07 000000576 INF: FPGA: Recv ZSGSRD 29317
17-03-18 02:30:59.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.634 -07 000000502 INF: FPGA: Recv ZSGSRD 29306
17-03-18 02:30:59.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:30:59.644 -07 000000430 INF: FPGA: Recv ZSGSRD 29305
17-03-18 02:30:59.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:30:59.654 -07 000000606 INF: FPGA: Recv ZPIEZORD 24842
17-03-18 02:30:59.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:30:59.664 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.8 V.
17-03-18 02:30:59.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29309 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29308 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29305 (-127.8 uncal um), Max = 29317 (-127.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:30:59.664 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29309, posNoise = 8, negNoise = 4
17-03-18 02:30:59.664 -07 000000610 INF: Z Motor: After move to -0.128602, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:30:59.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:30:59.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:30:59.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:30:59.664 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:30:59.664 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:30:59.664 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:30:59.664 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:30:59.664 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:30:59.664 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:30:59.664 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:30:59.664 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:30:59.674 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 02:30:59.674 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:30:59.674 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 6 ms.
17-03-18 02:30:59.674 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:30:59.674 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:30:59.674 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:30:59.684 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:30:59.684 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:30:59.694 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:30:59.694 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 02:30:59.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28270 150\n [Camera]
17-03-18 02:30:59.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:31:00.244 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.98264,
17-03-18 02:31:00.294 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:31:00.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:31:00.294 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:00.294 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:31:00.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:31:00.294 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:00.294 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:00.294 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:31:00.294 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:00.294 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:31:00.484 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28270 780
17-03-18 02:31:00.634 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:31:00.674 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:31:00.674 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:31:00.674 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:00.674 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:00.684 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:31:00.684 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:31:00.684 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:00.684 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:00.684 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:31:00.684 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:31:00.824 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:31:00.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:31:00.824 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:00.824 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:31:00.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:31:00.824 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:00.834 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:00.834 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:31:00.834 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:00.834 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:31:01.014 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:31:01.014 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:31:01.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28270 150' command took 2 ms to send, 1316 ms to get response, and 1321 ms overall
17-03-18 02:31:01.014 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:31:01.014 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128610585674007. ------
17-03-18 02:31:01.024 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13539 mm
17-03-18 02:31:01.024 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:31:01.024 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:01.024 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:31:01.024 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29576, sync = True, waitForSettling = False)
17-03-18 02:31:01.024 -07 000000591 INF: Z Motor: Moving to -0.135390 mm, started at -0.128611 mm, distance = -6.78 um
17-03-18 02:31:01.024 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:31:01.144 -07 000000591 INF: FPGA: Xmit ZDACW 29576\n [Z Motor]
17-03-18 02:31:01.144 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:01.144 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 02:31:01.144 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:31:01.154 -07 000000591 INF: FPGA: 'ZDACW 29576' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 02:31:01.154 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:31:01.164 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:01.164 -07 000000561 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:31:01.174 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:31:01.174 -07 000000462 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:01.174 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:31:01.174 -07 000000462 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:31:01.174 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:01.174 -07 000000501 INF: FPGA: Recv ZDACR 29576
17-03-18 02:31:01.184 -07 000000591 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:31:01.184 -07 000000591 INF: Z Motor: MoveAbsStepped took 155 ms (did NOT wait for settling yet))
17-03-18 02:31:01.184 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:31:01.234 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:31:01.234 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:31:01.234 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:01.234 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:31:01.234 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:31:01.234 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:01.234 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:01.234 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:01.234 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:31:01.244 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:31:01.354 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:31:01.354 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-18 02:31:01.484 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:31:01.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:31:01.554 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:31:01.554 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:31:01.604 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:01.604 -07 000000467 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:31:01.614 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:31:01.614 -07 000000462 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:01.614 -07 000000462 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:31:01.614 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-18 02:31:02.564 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:02.564 -07 000000455 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:31:02.574 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:02.574 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:02.594 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:31:02.594 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:31:02.594 -07 000000462 INF: Y Motor: Moved to 71.5190 after 1574 ms (table move)
17-03-18 02:31:02.604 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135390 mm (DAC = 29576)
17-03-18 02:31:02.604 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.604 -07 000000501 INF: FPGA: Recv ZSGSRD 30366
17-03-18 02:31:02.614 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:31:02.614 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.614 -07 000000462 INF: FPGA: Recv ZSGSRD 30366
17-03-18 02:31:02.624 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.624 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.624 -07 000000424 INF: FPGA: Recv ZSGSRD 30367
17-03-18 02:31:02.634 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.634 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.634 -07 000000618 INF: FPGA: Recv ZSGSRD 30364
17-03-18 02:31:02.644 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.644 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.644 -07 000000430 INF: FPGA: Recv ZSGSRD 30372
17-03-18 02:31:02.654 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.654 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.654 -07 000000569 INF: FPGA: Recv ZSGSRD 30367
17-03-18 02:31:02.664 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.664 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.664 -07 000000455 INF: FPGA: Recv ZSGSRD 30361
17-03-18 02:31:02.674 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.674 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.674 -07 000000502 INF: FPGA: Recv ZSGSRD 30365
17-03-18 02:31:02.684 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.684 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.684 -07 000000561 INF: FPGA: Recv ZSGSRD 30361
17-03-18 02:31:02.694 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.694 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:02.694 -07 000000467 INF: FPGA: Recv ZSGSRD 30370
17-03-18 02:31:02.704 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.704 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:02.704 -07 000000590 INF: FPGA: Recv ZPIEZORD 26222
17-03-18 02:31:02.714 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:02.714 -07 000000576 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -9.1 V.
17-03-18 02:31:02.714 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30366 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30366 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30361 (-134.6 uncal um), Max = 30372 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:31:02.714 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30366, posNoise = 6, negNoise = 5
17-03-18 02:31:02.714 -07 000000576 INF: Z Motor: After move to -0.135390, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:02.714 -07 000000576 INF: Z Motor: Settle wait time = 1577 ms, measure time = 108 ms (allowed 150 ms), total time = 1685 ms
17-03-18 02:31:02.714 -07 000000576 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:31:02.764 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 02:31:02.764 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:31:02.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:02.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:02.764 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:02.764 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:02.764 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:31:02.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:02.764 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:31:02.764 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:31:02.774 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:31:02.774 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:31:02.774 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:31:02.774 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:31:02.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:31:02.824 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:31:03.124 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:31:03.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:31:03.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:31:03.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:31:03.164 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:31:03.164 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:31:03.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:31:03.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:31:03.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:03.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:31:03.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:31:03.264 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:03.264 -07 000000618 INF: Autofocus start
17-03-18 02:31:03.264 -07 000000618 INF: MeasureProfile start
17-03-18 02:31:03.264 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:03.274 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:31:03.274 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:31:03.284 -07 000000618 INF: MeasureProfile done
17-03-18 02:31:03.284 -07 000000618 INF: X=-48  Z correction [um]=-0.2370583
17-03-18 02:31:03.284 -07 000000618 INF: Autofocus finished
17-03-18 02:31:03.474 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:31:03.474 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:31:03.474 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135400977907848. ----------
17-03-18 02:31:03.474 -07 000000610 INF: Cycle	100	Tile	15	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:31:03.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28036, sync = True, waitForSettling = True)
17-03-18 02:31:03.484 -07 000000610 INF: Z Motor: Moving to -0.128341 mm, started at -0.135401 mm, distance = 7.06 um
17-03-18 02:31:03.484 -07 000000610 INF: FPGA: Xmit ZDACW 28036\n [Z Motor]
17-03-18 02:31:03.484 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:31:03.494 -07 000000610 INF: FPGA: 'ZDACW 28036' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:03.494 -07 000000606 INF: FPGA: Recv ZDACR 28036
17-03-18 02:31:03.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:31:03.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.654 -07 000000462 INF: FPGA: Recv ZSGSRD 29272
17-03-18 02:31:03.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:03.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.664 -07 000000626 INF: FPGA: Recv ZSGSRD 29271
17-03-18 02:31:03.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.674 -07 000000512 INF: FPGA: Recv ZSGSRD 29264
17-03-18 02:31:03.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.684 -07 000000579 INF: FPGA: Recv ZSGSRD 29273
17-03-18 02:31:03.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:31:03.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.694 -07 000000576 INF: FPGA: Recv ZSGSRD 29271
17-03-18 02:31:03.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.704 -07 000000430 INF: FPGA: Recv ZSGSRD 29272
17-03-18 02:31:03.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.714 -07 000000561 INF: FPGA: Recv ZSGSRD 29263
17-03-18 02:31:03.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.724 -07 000000501 INF: FPGA: Recv ZSGSRD 29264
17-03-18 02:31:03.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.734 -07 000000590 INF: FPGA: Recv ZSGSRD 29268
17-03-18 02:31:03.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:03.744 -07 000000626 INF: FPGA: Recv ZSGSRD 29267
17-03-18 02:31:03.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:03.754 -07 000000512 INF: FPGA: Recv ZPIEZORD 24799
17-03-18 02:31:03.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:03.764 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.8 V.
17-03-18 02:31:03.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29268 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29270 (-127.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29263 (-127.5 uncal um), Max = 29273 (-127.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:31:03.764 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29268, posNoise = 5, negNoise = 5
17-03-18 02:31:03.764 -07 000000610 INF: Z Motor: After move to -0.128341, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:03.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:31:03.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:03.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:03.764 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:03.764 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:03.764 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:31:03.764 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:03.764 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:31:03.764 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:31:03.764 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:31:03.764 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:31:03.764 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:31:03.764 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:31:03.764 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:31:03.764 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:31:03.774 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:31:03.774 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:31:03.774 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:31:03.774 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:31:03.774 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:31:03.774 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:31:03.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28213 150\n [Camera]
17-03-18 02:31:03.984 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:31:04.374 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:31:04.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:31:04.384 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:04.384 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:31:04.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:31:04.384 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:04.384 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:04.384 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:31:04.384 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:04.384 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:31:04.564 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28213 780
17-03-18 02:31:04.714 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:31:04.784 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:31:04.784 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:31:04.784 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:04.784 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:31:04.784 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:31:04.784 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:04.784 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:04.784 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:31:04.784 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:04.794 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:31:04.904 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:31:04.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:31:04.914 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:04.914 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:04.914 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:31:04.914 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:31:04.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:31:04.914 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:04.914 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:04.914 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:31:05.104 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:31:05.104 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:31:05.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28213 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-18 02:31:05.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:31:05.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128347192976195. ------
17-03-18 02:31:05.104 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13465 mm
17-03-18 02:31:05.104 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:31:05.114 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:31:05.114 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:31:05.114 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29415, sync = True, waitForSettling = False)
17-03-18 02:31:05.114 -07 000000606 INF: Z Motor: Moving to -0.134653 mm, started at -0.128347 mm, distance = -6.31 um
17-03-18 02:31:05.124 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:05.124 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:05.134 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:05.134 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:31:05.134 -07 000000579 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:31:05.144 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:31:05.144 -07 000000606 INF: FPGA: Xmit ZDACW 29415\n [Z Motor]
17-03-18 02:31:05.144 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:05.144 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:31:05.144 -07 000000512 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:31:05.144 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:31:05.154 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:31:05.154 -07 000000606 INF: FPGA: 'ZDACW 29415' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 02:31:05.164 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:31:05.174 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:05.174 -07 000000626 INF: FPGA: Recv ZDACR 29415
17-03-18 02:31:05.184 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:31:05.184 -07 000000606 INF: Z Motor: MoveAbsStepped took 67 ms (did NOT wait for settling yet))
17-03-18 02:31:05.304 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:31:05.304 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:31:05.304 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:05.314 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:31:05.314 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:31:05.314 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:05.314 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:05.314 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:05.314 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:31:05.314 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:31:05.354 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:31:05.354 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:31:05.534 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:31:05.534 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:31:05.584 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:05.584 -07 000000606 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:31:05.594 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:31:05.594 -07 000000512 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:05.594 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:31:05.594 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 02:31:05.604 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.994908,
17-03-18 02:31:06.484 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:31:06.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:31:06.544 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:06.544 -07 000000455 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:31:06.554 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:06.554 -07 000000512 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:06.574 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:31:06.574 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:31:06.574 -07 000000512 INF: Y Motor: Moved to 72.3496 after 1467 ms (table move)
17-03-18 02:31:06.584 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134653 mm (DAC = 29415)
17-03-18 02:31:06.584 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.584 -07 000000430 INF: FPGA: Recv ZSGSRD 30257
17-03-18 02:31:06.594 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:31:06.594 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.594 -07 000000606 INF: FPGA: Recv ZSGSRD 30247
17-03-18 02:31:06.604 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:06.604 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.604 -07 000000618 INF: FPGA: Recv ZSGSRD 30249
17-03-18 02:31:06.614 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:06.614 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.614 -07 000000591 INF: FPGA: Recv ZSGSRD 30250
17-03-18 02:31:06.624 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:06.624 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.624 -07 000000626 INF: FPGA: Recv ZSGSRD 30257
17-03-18 02:31:06.634 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:06.634 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.634 -07 000000576 INF: FPGA: Recv ZSGSRD 30246
17-03-18 02:31:06.644 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:06.644 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.644 -07 000000462 INF: FPGA: Recv ZSGSRD 30252
17-03-18 02:31:06.654 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:06.654 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.654 -07 000000590 INF: FPGA: Recv ZSGSRD 30250
17-03-18 02:31:06.664 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:06.664 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.664 -07 000000579 INF: FPGA: Recv ZSGSRD 30246
17-03-18 02:31:06.674 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:06.674 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:06.674 -07 000000461 INF: FPGA: Recv ZSGSRD 30253
17-03-18 02:31:06.684 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:06.684 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:06.684 -07 000000462 INF: FPGA: Recv ZPIEZORD 26089
17-03-18 02:31:06.694 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:31:06.694 -07 000000424 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -9.2 V.
17-03-18 02:31:06.694 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30251 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30250 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30246 (-133.8 uncal um), Max = 30257 (-133.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:31:06.694 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30251, posNoise = 6, negNoise = 5
17-03-18 02:31:06.694 -07 000000424 INF: Z Motor: After move to -0.134653, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:06.694 -07 000000424 INF: Z Motor: Settle wait time = 1470 ms, measure time = 108 ms (allowed 150 ms), total time = 1578 ms
17-03-18 02:31:06.694 -07 000000424 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:31:06.744 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 02:31:06.744 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:31:06.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:06.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:06.744 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:31:06.744 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:06.744 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:06.744 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:06.744 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:31:06.744 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:31:06.754 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:31:06.754 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:31:06.754 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:31:06.764 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:31:06.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:31:06.814 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:31:07.114 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:31:07.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:31:07.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:31:07.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:31:07.144 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:31:07.154 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:31:07.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:31:07.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:31:07.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:07.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:31:07.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:31:07.254 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:07.254 -07 000000455 INF: Autofocus start
17-03-18 02:31:07.254 -07 000000455 INF: MeasureProfile start
17-03-18 02:31:07.254 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:07.264 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:31:07.264 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:31:07.274 -07 000000455 INF: MeasureProfile done
17-03-18 02:31:07.274 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:31:07.274 -07 000000455 INF: Autofocus finished
17-03-18 02:31:07.464 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:31:07.464 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:31:07.464 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134662193511546. ----------
17-03-18 02:31:07.474 -07 000000610 INF: Cycle	100	Tile	16	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:31:07.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27939, sync = True, waitForSettling = True)
17-03-18 02:31:07.474 -07 000000610 INF: Z Motor: Moving to -0.127897 mm, started at -0.134662 mm, distance = 6.77 um
17-03-18 02:31:07.474 -07 000000610 INF: FPGA: Xmit ZDACW 27939\n [Z Motor]
17-03-18 02:31:07.474 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:31:07.484 -07 000000610 INF: FPGA: 'ZDACW 27939' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:31:07.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:07.484 -07 000000576 INF: FPGA: Recv ZDACR 27939
17-03-18 02:31:07.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:31:07.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.644 -07 000000606 INF: FPGA: Recv ZSGSRD 29198
17-03-18 02:31:07.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:07.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.654 -07 000000626 INF: FPGA: Recv ZSGSRD 29201
17-03-18 02:31:07.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.664 -07 000000618 INF: FPGA: Recv ZSGSRD 29197
17-03-18 02:31:07.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.674 -07 000000444 INF: FPGA: Recv ZSGSRD 29200
17-03-18 02:31:07.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.684 -07 000000502 INF: FPGA: Recv ZSGSRD 29205
17-03-18 02:31:07.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.694 -07 000000591 INF: FPGA: Recv ZSGSRD 29195
17-03-18 02:31:07.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.704 -07 000000561 INF: FPGA: Recv ZSGSRD 29202
17-03-18 02:31:07.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.714 -07 000000461 INF: FPGA: Recv ZSGSRD 29196
17-03-18 02:31:07.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.724 -07 000000430 INF: FPGA: Recv ZSGSRD 29198
17-03-18 02:31:07.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:07.734 -07 000000462 INF: FPGA: Recv ZSGSRD 29200
17-03-18 02:31:07.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:07.744 -07 000000579 INF: FPGA: Recv ZPIEZORD 24717
17-03-18 02:31:07.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:07.754 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.263 V. Piezo Error = -9.8 V.
17-03-18 02:31:07.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29199 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29199 (-127.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29195 (-127.1 uncal um), Max = 29205 (-127.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:31:07.754 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29199, posNoise = 6, negNoise = 4
17-03-18 02:31:07.754 -07 000000610 INF: Z Motor: After move to -0.127897, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:07.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:31:07.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:07.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:07.754 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:07.754 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:07.754 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:31:07.754 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:31:07.754 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:07.754 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:31:07.754 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:31:07.754 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:31:07.754 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:31:07.754 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:31:07.764 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:31:07.764 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:31:07.764 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:31:07.764 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:31:07.774 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:31:07.774 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:31:07.774 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:31:07.774 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:31:07.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28116 150\n [Camera]
17-03-18 02:31:07.974 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:31:08.374 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:31:08.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:31:08.374 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:08.374 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:08.374 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:31:08.374 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:31:08.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:31:08.374 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:08.374 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:08.374 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:31:08.564 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28116 780
17-03-18 02:31:08.714 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:31:08.754 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:31:08.754 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:31:08.754 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:08.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:31:08.754 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:31:08.754 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:08.764 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:08.764 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:08.764 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:31:08.764 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:31:08.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:31:08.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:31:08.904 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:08.904 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:08.904 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 02:31:08.904 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:31:08.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:31:08.904 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:08.904 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:08.904 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:31:09.094 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:31:09.094 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:31:09.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28116 150' command took 2 ms to send, 1315 ms to get response, and 1323 ms overall
17-03-18 02:31:09.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:31:09.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.127903922338413. ------
17-03-18 02:31:09.104 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:09.104 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13453 mm
17-03-18 02:31:09.104 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:31:09.104 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:09.104 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29389, sync = True, waitForSettling = False)
17-03-18 02:31:09.104 -07 000000424 INF: Z Motor: Moving to -0.134534 mm, started at -0.127904 mm, distance = -6.63 um
17-03-18 02:31:09.104 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:31:09.104 -07 000000430 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 02:31:09.114 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:09.114 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:09.114 -07 000000501 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:31:09.124 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:31:09.124 -07 000000424 INF: FPGA: Xmit ZDACW 29389\n [Z Motor]
17-03-18 02:31:09.124 -07 000000430 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:09.124 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:31:09.124 -07 000000430 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:31:09.124 -07 000000430 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:31:09.134 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:31:09.134 -07 000000424 INF: FPGA: 'ZDACW 29389' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:31:09.144 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:09.144 -07 000000590 INF: FPGA: Recv ZDACR 29389
17-03-18 02:31:09.154 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:31:09.154 -07 000000424 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:31:09.154 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:31:09.304 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:31:09.314 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:31:09.314 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:09.314 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:31:09.314 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:31:09.314 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:09.314 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:09.314 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:31:09.314 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:31:09.324 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:31:09.334 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:31:09.334 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:31:09.524 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:31:09.524 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 02:31:09.574 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:09.574 -07 000000561 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:31:09.584 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:31:09.584 -07 000000430 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:09.584 -07 000000430 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-18 02:31:09.584 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.843 mm, average velocity = 2.113 mm/sec
17-03-18 02:31:10.534 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:10.534 -07 000000590 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:31:10.544 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:10.544 -07 000000430 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:10.564 -07 000000430 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:31:10.564 -07 000000430 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:31:10.564 -07 000000430 INF: Y Motor: Moved to 73.1763 after 1463 ms (table move)
17-03-18 02:31:10.574 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134534 mm (DAC = 29389)
17-03-18 02:31:10.574 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.574 -07 000000626 INF: FPGA: Recv ZSGSRD 30229
17-03-18 02:31:10.584 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:31:10.584 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.584 -07 000000629 INF: FPGA: Recv ZSGSRD 30228
17-03-18 02:31:10.594 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:10.594 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.594 -07 000000444 INF: FPGA: Recv ZSGSRD 30235
17-03-18 02:31:10.604 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:10.604 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.604 -07 000000618 INF: FPGA: Recv ZSGSRD 30235
17-03-18 02:31:10.614 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:10.614 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.614 -07 000000606 INF: FPGA: Recv ZSGSRD 30226
17-03-18 02:31:10.624 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:10.624 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.624 -07 000000512 INF: FPGA: Recv ZSGSRD 30231
17-03-18 02:31:10.634 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:10.634 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.634 -07 000000467 INF: FPGA: Recv ZSGSRD 30227
17-03-18 02:31:10.644 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:10.654 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.654 -07 000000606 INF: FPGA: Recv ZSGSRD 30231
17-03-18 02:31:10.664 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:31:10.664 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.664 -07 000000512 INF: FPGA: Recv ZSGSRD 30233
17-03-18 02:31:10.674 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:10.674 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:10.674 -07 000000579 INF: FPGA: Recv ZSGSRD 30230
17-03-18 02:31:10.684 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:10.684 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:10.684 -07 000000467 INF: FPGA: Recv ZPIEZORD 26071
17-03-18 02:31:10.694 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:10.694 -07 000000502 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -9.2 V.
17-03-18 02:31:10.694 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30230 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30230 (-133.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30226 (-133.7 uncal um), Max = 30235 (-133.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:31:10.694 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30230, posNoise = 5, negNoise = 4
17-03-18 02:31:10.694 -07 000000502 INF: Z Motor: After move to -0.134534, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:10.694 -07 000000502 INF: Z Motor: Settle wait time = 1467 ms, measure time = 118 ms (allowed 150 ms), total time = 1585 ms
17-03-18 02:31:10.694 -07 000000502 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 02:31:10.734 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 02:31:10.734 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:31:10.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:10.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:10.734 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:10.734 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:10.734 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:31:10.734 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:10.734 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:31:10.734 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:31:10.734 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:31:10.734 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:31:10.744 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:31:10.744 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:31:10.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:31:10.794 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:31:10.964 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.999021,
17-03-18 02:31:11.094 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:31:11.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:31:11.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:31:11.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:31:11.134 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:31:11.134 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:31:11.134 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:31:11.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:31:11.214 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:11.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:31:11.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:31:11.234 -07 000000455 INF: Autofocus start
17-03-18 02:31:11.234 -07 000000455 INF: MeasureProfile start
17-03-18 02:31:11.234 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:11.234 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:11.244 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:31:11.244 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:31:11.244 -07 000000455 INF: MeasureProfile done
17-03-18 02:31:11.244 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:31:11.244 -07 000000455 INF: Autofocus finished
17-03-18 02:31:11.444 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:31:11.444 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:31:11.444 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134527285056569. ----------
17-03-18 02:31:11.444 -07 000000610 INF: Cycle	100	Tile	17	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:31:11.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27896, sync = True, waitForSettling = True)
17-03-18 02:31:11.454 -07 000000610 INF: Z Motor: Moving to -0.127700 mm, started at -0.134527 mm, distance = 6.83 um
17-03-18 02:31:11.454 -07 000000610 INF: FPGA: Xmit ZDACW 27896\n [Z Motor]
17-03-18 02:31:11.454 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:31:11.464 -07 000000610 INF: FPGA: 'ZDACW 27896' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:11.464 -07 000000561 INF: FPGA: Recv ZDACR 27896
17-03-18 02:31:11.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:31:11.484 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:31:11.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:31:11.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.624 -07 000000626 INF: FPGA: Recv ZSGSRD 29176
17-03-18 02:31:11.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:11.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.634 -07 000000579 INF: FPGA: Recv ZSGSRD 29164
17-03-18 02:31:11.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.644 -07 000000629 INF: FPGA: Recv ZSGSRD 29168
17-03-18 02:31:11.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.654 -07 000000576 INF: FPGA: Recv ZSGSRD 29167
17-03-18 02:31:11.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.664 -07 000000467 INF: FPGA: Recv ZSGSRD 29173
17-03-18 02:31:11.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.674 -07 000000430 INF: FPGA: Recv ZSGSRD 29169
17-03-18 02:31:11.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.684 -07 000000579 INF: FPGA: Recv ZSGSRD 29164
17-03-18 02:31:11.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.694 -07 000000569 INF: FPGA: Recv ZSGSRD 29171
17-03-18 02:31:11.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.704 -07 000000590 INF: FPGA: Recv ZSGSRD 29170
17-03-18 02:31:11.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:11.714 -07 000000502 INF: FPGA: Recv ZSGSRD 29164
17-03-18 02:31:11.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:11.724 -07 000000455 INF: FPGA: Recv ZPIEZORD 24690
17-03-18 02:31:11.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:11.734 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -9.8 V.
17-03-18 02:31:11.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29169 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29168 (-126.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29164 (-126.9 uncal um), Max = 29176 (-127.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:31:11.734 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29169, posNoise = 7, negNoise = 5
17-03-18 02:31:11.734 -07 000000610 INF: Z Motor: After move to -0.127700, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:11.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:31:11.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:11.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:11.734 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:11.734 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:11.734 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:31:11.734 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:11.734 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:31:11.734 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:31:11.734 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:31:11.734 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:31:11.734 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:31:11.734 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:31:11.744 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:31:11.744 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:31:11.744 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:31:11.744 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:31:11.754 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:31:11.754 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:31:11.754 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:31:11.754 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:31:11.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 28073 150\n [Camera]
17-03-18 02:31:11.964 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:31:12.354 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:31:12.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:31:12.354 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:12.354 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:31:12.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:31:12.364 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:12.364 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:12.364 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:31:12.364 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:12.364 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) start.
17-03-18 02:31:12.544 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28073 780
17-03-18 02:31:12.694 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:31:12.754 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:31:12.754 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:31:12.754 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:12.754 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:31:12.754 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:31:12.754 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:12.764 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:12.764 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:31:12.764 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:12.764 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:31:12.884 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:31:12.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:31:12.884 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:12.894 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:31:12.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:31:12.894 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:12.894 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:12.894 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:31:12.904 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:12.904 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:31:13.084 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:31:13.084 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:31:13.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 28073 150' command took 2 ms to send, 1314 ms to get response, and 1323 ms overall
17-03-18 02:31:13.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:31:13.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.12771119597416. ------
17-03-18 02:31:13.094 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:13.094 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13401 mm
17-03-18 02:31:13.094 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:31:13.094 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:13.094 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:31:13.094 -07 000000629 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:31:13.094 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29274, sync = True, waitForSettling = False)
17-03-18 02:31:13.094 -07 000000576 INF: Z Motor: Moving to -0.134008 mm, started at -0.127711 mm, distance = -6.30 um
17-03-18 02:31:13.214 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 127 ms overall
17-03-18 02:31:13.214 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:13.224 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:31:13.224 -07 000000606 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:31:13.224 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 127 ms overall
17-03-18 02:31:13.224 -07 000000629 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:13.224 -07 000000629 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:31:13.224 -07 000000629 INF: Y Motor: Moving 1354 steps-34
17-03-18 02:31:13.234 -07 000000576 INF: FPGA: Xmit ZDACW 29274\n [Z Motor]
17-03-18 02:31:13.234 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:31:13.244 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:31:13.244 -07 000000576 INF: FPGA: 'ZDACW 29274' command took 0 ms to send, 0 ms to get response, and 145 ms overall
17-03-18 02:31:13.254 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:13.254 -07 000000569 INF: FPGA: Recv ZDACR 29274
17-03-18 02:31:13.264 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:31:13.264 -07 000000576 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-18 02:31:13.294 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:31:13.294 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:31:13.294 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:13.294 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:13.294 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:31:13.294 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:31:13.294 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:13.304 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:13.304 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:31:13.304 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:31:13.424 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:31:13.424 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 204 ms overall
17-03-18 02:31:13.614 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:31:13.614 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 02:31:13.654 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:13.654 -07 000000501 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:31:13.664 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:31:13.664 -07 000000629 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:13.664 -07 000000629 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:31:13.664 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.846 mm, average velocity = 2.137 mm/sec
17-03-18 02:31:14.614 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:14.614 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:31:14.624 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:14.624 -07 000000629 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:14.644 -07 000000629 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:31:14.644 -07 000000629 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:31:14.644 -07 000000629 INF: Y Motor: Moved to 74.0083 after 1548 ms (table move)
17-03-18 02:31:14.644 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134008 mm (DAC = 29274)
17-03-18 02:31:14.644 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.644 -07 000000579 INF: FPGA: Recv ZSGSRD 30147
17-03-18 02:31:14.654 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:31:14.654 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.654 -07 000000561 INF: FPGA: Recv ZSGSRD 30144
17-03-18 02:31:14.664 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.664 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.664 -07 000000455 INF: FPGA: Recv ZSGSRD 30143
17-03-18 02:31:14.674 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.674 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.674 -07 000000461 INF: FPGA: Recv ZSGSRD 30148
17-03-18 02:31:14.684 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.684 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.684 -07 000000629 INF: FPGA: Recv ZSGSRD 30156
17-03-18 02:31:14.694 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.694 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.694 -07 000000591 INF: FPGA: Recv ZSGSRD 30155
17-03-18 02:31:14.704 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.704 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.704 -07 000000626 INF: FPGA: Recv ZSGSRD 30146
17-03-18 02:31:14.714 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.714 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.714 -07 000000444 INF: FPGA: Recv ZSGSRD 30150
17-03-18 02:31:14.724 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.724 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.724 -07 000000467 INF: FPGA: Recv ZSGSRD 30146
17-03-18 02:31:14.734 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.734 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:14.734 -07 000000501 INF: FPGA: Recv ZSGSRD 30147
17-03-18 02:31:14.744 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.744 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:14.744 -07 000000590 INF: FPGA: Recv ZPIEZORD 25984
17-03-18 02:31:14.754 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:14.754 -07 000000462 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.467 V. Piezo Error = -9.2 V.
17-03-18 02:31:14.754 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30148 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30147 (-133.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30143 (-133.2 uncal um), Max = 30156 (-133.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:31:14.754 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30148, posNoise = 8, negNoise = 5
17-03-18 02:31:14.754 -07 000000462 INF: Z Motor: After move to -0.134008, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:14.754 -07 000000462 INF: Z Motor: Settle wait time = 1551 ms, measure time = 104 ms (allowed 150 ms), total time = 1655 ms
17-03-18 02:31:14.754 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:31:14.804 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-18 02:31:14.804 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:31:14.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:14.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:14.804 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:14.814 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:14.814 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:31:14.814 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:14.814 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:31:14.814 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:31:14.814 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:31:14.814 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:31:14.824 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:31:14.824 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:31:14.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:31:14.864 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:31:15.164 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:31:15.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:31:15.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:31:15.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:31:15.204 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:31:15.204 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:31:15.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:31:15.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:31:15.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:15.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:31:15.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:31:15.304 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:15.304 -07 000000455 INF: Autofocus start
17-03-18 02:31:15.304 -07 000000455 INF: MeasureProfile start
17-03-18 02:31:15.304 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:15.314 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:31:15.314 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:31:15.314 -07 000000455 INF: MeasureProfile done
17-03-18 02:31:15.314 -07 000000455 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:31:15.314 -07 000000455 INF: Autofocus finished
17-03-18 02:31:15.514 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:31:15.514 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:31:15.514 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134000499660944. ----------
17-03-18 02:31:15.514 -07 000000610 INF: Cycle	100	Tile	18	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:31:15.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27815, sync = True, waitForSettling = True)
17-03-18 02:31:15.524 -07 000000610 INF: Z Motor: Moving to -0.127329 mm, started at -0.134000 mm, distance = 6.67 um
17-03-18 02:31:15.524 -07 000000610 INF: FPGA: Xmit ZDACW 27815\n [Z Motor]
17-03-18 02:31:15.524 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:31:15.534 -07 000000610 INF: FPGA: 'ZDACW 27815' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:15.534 -07 000000579 INF: FPGA: Recv ZDACR 27815
17-03-18 02:31:15.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:31:15.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.694 -07 000000606 INF: FPGA: Recv ZSGSRD 29113
17-03-18 02:31:15.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.704 -07 000000590 INF: FPGA: Recv ZSGSRD 29115
17-03-18 02:31:15.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.714 -07 000000501 INF: FPGA: Recv ZSGSRD 29113
17-03-18 02:31:15.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.724 -07 000000629 INF: FPGA: Recv ZSGSRD 29115
17-03-18 02:31:15.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.734 -07 000000512 INF: FPGA: Recv ZSGSRD 29105
17-03-18 02:31:15.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.744 -07 000000569 INF: FPGA: Recv ZSGSRD 29116
17-03-18 02:31:15.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.754 -07 000000579 INF: FPGA: Recv ZSGSRD 29112
17-03-18 02:31:15.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.764 -07 000000430 INF: FPGA: Recv ZSGSRD 29106
17-03-18 02:31:15.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.774 -07 000000618 INF: FPGA: Recv ZSGSRD 29115
17-03-18 02:31:15.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:15.784 -07 000000626 INF: FPGA: Recv ZSGSRD 29110
17-03-18 02:31:15.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:15.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:15.814 -07 000000462 INF: FPGA: Recv ZPIEZORD 24626
17-03-18 02:31:15.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:31:15.824 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.8 V.
17-03-18 02:31:15.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29112 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29113 (-126.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29105 (-126.5 uncal um), Max = 29116 (-126.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:31:15.824 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29112, posNoise = 4, negNoise = 7
17-03-18 02:31:15.824 -07 000000610 INF: Z Motor: After move to -0.127329, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:15.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-18 02:31:15.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:15.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:15.824 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:15.824 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:15.824 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:31:15.824 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:15.824 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:31:15.824 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:31:15.824 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:31:15.824 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:31:15.824 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:31:15.824 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:31:15.824 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:31:15.824 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:31:15.824 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:31:15.824 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:31:15.834 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:31:15.834 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:31:15.834 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:31:15.834 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:31:15.854 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 27992 150\n [Camera]
17-03-18 02:31:16.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:31:16.324 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 3.986717,
17-03-18 02:31:16.444 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:31:16.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:31:16.444 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:16.444 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:16.444 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:31:16.444 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:31:16.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:31:16.444 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:16.444 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:16.444 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) start.
17-03-18 02:31:16.484 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:31:16.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:31:16.634 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27992 780
17-03-18 02:31:16.784 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:31:16.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:31:16.834 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:31:16.834 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:16.844 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1116030168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:31:16.844 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:31:16.844 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:16.844 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:16.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:31:16.844 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:31:16.854 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:31:16.974 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1120
17-03-18 02:31:16.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1120
17-03-18 02:31:16.974 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:16.984 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:16.984 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) start.
17-03-18 02:31:16.984 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1120
17-03-18 02:31:16.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1120
17-03-18 02:31:16.984 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:16.984 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:16.984 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:31:17.164 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:31:17.174 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:31:17.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 27992 150' command took 2 ms to send, 1310 ms to get response, and 1327 ms overall
17-03-18 02:31:17.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:31:17.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.12734501588208. ------
17-03-18 02:31:17.174 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:17.174 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13323 mm
17-03-18 02:31:17.174 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:31:17.174 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:31:17.174 -07 000000461 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:31:17.174 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:17.174 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29104, sync = True, waitForSettling = False)
17-03-18 02:31:17.174 -07 000000444 INF: Z Motor: Moving to -0.133230 mm, started at -0.127345 mm, distance = -5.88 um
17-03-18 02:31:17.184 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:31:17.184 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:17.184 -07 000000629 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:31:17.194 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:31:17.194 -07 000000461 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:17.194 -07 000000461 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:31:17.194 -07 000000461 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:31:17.194 -07 000000444 INF: FPGA: Xmit ZDACW 29104\n [Z Motor]
17-03-18 02:31:17.194 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:31:17.204 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:31:17.204 -07 000000444 INF: FPGA: 'ZDACW 29104' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:31:17.214 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:31:17.224 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:17.224 -07 000000512 INF: FPGA: Recv ZDACR 29104
17-03-18 02:31:17.234 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:31:17.234 -07 000000444 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:31:17.384 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1151452432, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:31:17.384 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:31:17.384 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:17.384 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:31:17.384 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:31:17.384 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:17.384 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:17.384 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:31:17.384 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:17.394 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:31:17.404 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:31:17.404 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:31:17.584 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:31:17.584 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:31:17.614 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:17.614 -07 000000501 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:31:17.624 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:31:17.624 -07 000000461 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:17.624 -07 000000461 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:31:17.624 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 02:31:18.574 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:18.574 -07 000000467 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:31:18.584 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.584 -07 000000461 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:18.594 -07 000000461 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:31:18.594 -07 000000461 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:31:18.594 -07 000000461 INF: Y Motor: Moved to 74.8320 after 1420 ms (table move)
17-03-18 02:31:18.604 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133230 mm (DAC = 29104)
17-03-18 02:31:18.604 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.604 -07 000000455 INF: FPGA: Recv ZSGSRD 30031
17-03-18 02:31:18.614 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:31:18.614 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.614 -07 000000626 INF: FPGA: Recv ZSGSRD 30033
17-03-18 02:31:18.624 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.624 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.624 -07 000000502 INF: FPGA: Recv ZSGSRD 30025
17-03-18 02:31:18.634 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.634 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.634 -07 000000424 INF: FPGA: Recv ZSGSRD 30025
17-03-18 02:31:18.644 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.644 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.644 -07 000000444 INF: FPGA: Recv ZSGSRD 30031
17-03-18 02:31:18.654 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.654 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.654 -07 000000590 INF: FPGA: Recv ZSGSRD 30027
17-03-18 02:31:18.664 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.664 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.664 -07 000000579 INF: FPGA: Recv ZSGSRD 30031
17-03-18 02:31:18.674 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.674 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.674 -07 000000606 INF: FPGA: Recv ZSGSRD 30027
17-03-18 02:31:18.684 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.684 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.684 -07 000000461 INF: FPGA: Recv ZSGSRD 30029
17-03-18 02:31:18.694 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.694 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:18.694 -07 000000444 INF: FPGA: Recv ZSGSRD 30030
17-03-18 02:31:18.704 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.704 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:18.704 -07 000000590 INF: FPGA: Recv ZPIEZORD 25838
17-03-18 02:31:18.714 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:18.714 -07 000000618 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.2 V.
17-03-18 02:31:18.714 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30029 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30030 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30025 (-132.4 uncal um), Max = 30033 (-132.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:31:18.714 -07 000000618 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30029, posNoise = 4, negNoise = 4
17-03-18 02:31:18.714 -07 000000618 INF: Z Motor: After move to -0.133230, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:18.714 -07 000000618 INF: Z Motor: Settle wait time = 1427 ms, measure time = 105 ms (allowed 150 ms), total time = 1532 ms
17-03-18 02:31:18.714 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:31:18.764 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-18 02:31:18.764 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:31:18.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:18.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:18.764 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:18.764 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:18.764 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:31:18.764 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:18.764 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:31:18.764 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:31:18.774 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:31:18.774 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:31:18.774 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:31:18.774 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:31:18.784 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:31:18.824 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:31:19.124 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:31:19.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:31:19.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:31:19.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-18 02:31:19.164 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:31:19.164 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:31:19.164 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:31:19.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:31:19.244 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:19.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:31:19.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:31:19.264 -07 000000561 INF: Autofocus start
17-03-18 02:31:19.264 -07 000000561 INF: MeasureProfile start
17-03-18 02:31:19.264 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:31:19.264 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:31:19.274 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:31:19.274 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:31:19.274 -07 000000561 INF: MeasureProfile done
17-03-18 02:31:19.274 -07 000000561 INF: X=112  Z correction [um]=0.5148152
17-03-18 02:31:19.274 -07 000000561 INF: Autofocus finished
17-03-18 02:31:19.474 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:31:19.474 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:31:19.474 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133236018416075. ----------
17-03-18 02:31:19.484 -07 000000610 INF: Cycle	100	Tile	19	Exposure Settings		A	395	G	190	T	190	C	395
17-03-18 02:31:19.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27729, sync = True, waitForSettling = True)
17-03-18 02:31:19.484 -07 000000610 INF: Z Motor: Moving to -0.126935 mm, started at -0.133236 mm, distance = 6.30 um
17-03-18 02:31:19.484 -07 000000610 INF: FPGA: Xmit ZDACW 27729\n [Z Motor]
17-03-18 02:31:19.484 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:31:19.494 -07 000000610 INF: FPGA: 'ZDACW 27729' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:31:19.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:31:19.494 -07 000000629 INF: FPGA: Recv ZDACR 27729
17-03-18 02:31:19.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:31:19.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.654 -07 000000430 INF: FPGA: Recv ZSGSRD 29048
17-03-18 02:31:19.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:19.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.664 -07 000000576 INF: FPGA: Recv ZSGSRD 29047
17-03-18 02:31:19.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.674 -07 000000618 INF: FPGA: Recv ZSGSRD 29050
17-03-18 02:31:19.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.684 -07 000000591 INF: FPGA: Recv ZSGSRD 29049
17-03-18 02:31:19.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.694 -07 000000467 INF: FPGA: Recv ZSGSRD 29051
17-03-18 02:31:19.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.704 -07 000000579 INF: FPGA: Recv ZSGSRD 29053
17-03-18 02:31:19.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.714 -07 000000455 INF: FPGA: Recv ZSGSRD 29049
17-03-18 02:31:19.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.724 -07 000000629 INF: FPGA: Recv ZSGSRD 29044
17-03-18 02:31:19.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.734 -07 000000576 INF: FPGA: Recv ZSGSRD 29052
17-03-18 02:31:19.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:31:19.744 -07 000000502 INF: FPGA: Recv ZSGSRD 29050
17-03-18 02:31:19.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:31:19.754 -07 000000591 INF: FPGA: Recv ZPIEZORD 24571
17-03-18 02:31:19.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:19.764 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.231 V. Piezo Error = -9.8 V.
17-03-18 02:31:19.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29049 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29050 (-126.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29044 (-126.1 uncal um), Max = 29053 (-126.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:31:19.764 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29049, posNoise = 4, negNoise = 5
17-03-18 02:31:19.764 -07 000000610 INF: Z Motor: After move to -0.126935, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:31:19.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:31:19.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:31:19.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:31:19.764 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:31:19.764 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:31:19.764 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:31:19.764 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:31:19.764 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:31:19.764 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:31:19.764 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:31:19.764 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:31:19.764 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:31:19.764 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:31:19.774 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:31:19.774 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:31:19.774 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:31:19.774 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:31:19.784 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:31:19.784 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:31:19.784 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:31:19.784 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:31:19.794 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 395 395 190 190 27906 150\n [Camera]
17-03-18 02:31:19.994 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:31:20.384 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 587
17-03-18 02:31:20.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 587
17-03-18 02:31:20.384 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:20.384 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:20.384 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:31:20.384 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 587
17-03-18 02:31:20.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 587
17-03-18 02:31:20.394 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:20.394 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:20.394 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:31:20.574 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27906 780
17-03-18 02:31:20.724 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 930
17-03-18 02:31:20.774 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:31:20.774 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:31:20.774 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:20.774 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:20.774 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:31:20.784 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:31:20.784 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:31:20.784 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:20.784 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:20.794 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:31:20.924 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-18 02:31:20.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-18 02:31:20.924 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:31:20.924 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:31:20.924 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:31:20.924 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-18 02:31:20.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-18 02:31:20.924 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:31:20.924 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:31:20.924 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:31:21.114 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1312
17-03-18 02:31:21.114 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:31:21.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 395 395 190 190 27906 150' command took 2 ms to send, 1311 ms to get response, and 1319 ms overall
17-03-18 02:31:21.324 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:31:21.324 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:31:21.324 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:21.324 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:31:21.324 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:31:21.324 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:31:21.334 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:31:21.334 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:31:21.334 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:31:21.334 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:31:21.334 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:31:21.374 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:31:21.374 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:31:21.664 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 283 ms.
17-03-18 02:31:21.664 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:31:21.664 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 99. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:31:21.674 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-18 02:31:21.674 -07 000000610 INF: Imaging Cycle 100: ScanTilesCommand Cycle 100 time end. Duration was 162015 ms.
17-03-18 02:31:21.674 -07 000000610 INF: =================== Cycle #100 ===================
17-03-18 02:31:21.674 -07 000000610 INF: ===================  ===================
17-03-18 02:31:21.684 -07 000000502 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:31:21.684 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.004458,
17-03-18 02:31:21.684 -07 000000629 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 02:31:21.694 -07 000000502 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:31:21.694 -07 000000502 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 02:31:21.694 -07 000000502 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 100, FrontChillerTemperature: 4.004458, FrontChillerHeatSinkTemperature: 0.600598, AmbientTemperature: 18.72408, FlowCellCompartmentTemperature: 21.99544, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.45813, GreenLEDSensorTemperature: 26.84808, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 02:31:21.774 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.