17-03-18 02:31:21.824 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:31:21.824 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:31:21.824 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 02:31:21.824 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:21.834 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:31:21.834 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:31:21.834 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:21.834 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:31:21.834 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:31:21.834 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:31:21.944 -07 000000461 INF: FPGA: Recv YMVTO 154379 878
17-03-18 02:31:21.944 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 118 ms overall
17-03-18 02:31:21.944 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 02:31:21.944 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 02:31:21.954 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 02:31:24.954 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:31:24.954 -07 000000467 INF: FPGA: Recv YRDPOS 154388
17-03-18 02:31:24.964 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:24.964 -07 000000610 INF: Y Motor: Encoder = 154388 = motor step 120615.6 = 75.3848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:31:24.984 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.004186, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:31:24.984 -07 000000610 INF: Y Motor: Position error after settling = 9 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 02:31:24.984 -07 000000610 INF: Y Motor: Moved to 75.3848 after 3156 ms
17-03-18 02:31:24.984 -07 000000610 INF: =================== Cycle #101, Flow Cell Temp 60° ===================
17-03-18 02:31:24.984 -07 000000610 INF: =================== Cycle #101, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:31:24.984 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 02:31:24.994 -07 000000467 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:31:25.004 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:31:25.004 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:31:25.004 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 02:31:25.014 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:31:25.014 -07 000000610 INF: =================== Cycle #101, Flow Cell Temp 60° ===================
17-03-18 02:31:25.014 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:31:25.014 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:31:25.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:31:25.044 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:31:25.044 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:31:25.044 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:31:25.344 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:31:25.364 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:31:25.364 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:31:25.414 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:31:25.434 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:31:25.434 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:31:25.534 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:31:25.534 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:31:25.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:25.564 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:31:25.564 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:31:25.564 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:31:25.694 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:31:25.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:26.484 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:31:26.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1500, R2=1564, Total=3064. Warn if over 250 bubbles per interval.
17-03-18 02:31:27.064 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.997626,
17-03-18 02:31:28.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:28.894 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:29.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:29.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:29.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:29.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:29.794 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:31:29.794 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:31:29.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:29.954 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:31:29.954 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:31:30.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:30.114 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:31:30.114 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:31:30.114 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:31:30.244 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:31:30.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:30.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:30.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:30.734 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:31:30.734 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:31:31.484 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:31:31.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1501, R2=1565, Total=3066. Warn if over 250 bubbles per interval.
17-03-18 02:31:31.954 -07 000000610 INF: AsyncDelayTimer waited 1208ms
17-03-18 02:31:31.954 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:31:31.954 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:31:31.974 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:31:31.974 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:31:31.974 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:31:32.114 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:31:32.134 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:31:32.134 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:31:32.184 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:31:32.204 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:31:32.204 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:31:32.304 -07 000000610 INF: =================== Cycle #101, Pumping Reagent CMS (4) ===================
17-03-18 02:31:32.304 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:31:32.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:32.334 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:31:32.334 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:31:32.334 -07 000000610 INF: =================== Cycle #101, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:31:32.424 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.03576,
17-03-18 02:31:32.464 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:31:32.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:33.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:33.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:34.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:34.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:34.424 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:31:34.424 -07 000000610 INF: =================== Cycle #101, Pumping Reagent CMS (4) ===================
17-03-18 02:31:34.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:34.584 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:31:34.584 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:31:34.714 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:34.744 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:31:34.744 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:31:34.744 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:31:34.874 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:31:34.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:35.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:35.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:35.364 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:31:35.364 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:31:36.484 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 3
17-03-18 02:31:36.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=3, R2=1, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1504, R2=1566, Total=3070. Warn if over 250 bubbles per interval.
17-03-18 02:31:36.584 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:31:36.584 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:31:36.584 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:31:36.604 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:31:36.604 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:31:36.604 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:31:36.754 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:31:36.774 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:31:36.774 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:31:36.824 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:31:36.844 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:31:36.844 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:31:36.944 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:31:36.944 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:31:36.944 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:36.974 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:31:36.974 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:31:36.974 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:31:37.104 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:31:37.144 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:37.784 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.046637,
17-03-18 02:31:38.014 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:38.044 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:38.044 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:31:38.044 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:31:38.174 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:38.204 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:31:38.204 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:31:38.334 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:38.364 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:31:38.364 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:31:38.364 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:31:38.494 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:31:38.524 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:38.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:38.984 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:38.984 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:31:38.984 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:31:38.984 -07 000000501 INF: WaitCommand(10000) start
17-03-18 02:31:38.984 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:31:38.984 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:31:40.204 -07 000000462 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:31:40.204 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-18 02:31:40.234 -07 000000462 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:31:40.234 -07 000000462 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:31:40.364 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:31:40.404 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:41.484 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:31:41.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1504, R2=1567, Total=3071. Warn if over 250 bubbles per interval.
17-03-18 02:31:41.934 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:41.964 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:42.384 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:42.414 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:42.414 -07 000000462 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:31:42.414 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:31:42.414 -07 000000462 INF: ===================  ===================
17-03-18 02:31:43.144 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.016692,
17-03-18 02:31:46.484 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:31:46.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1504, R2=1567, Total=3071. Warn if over 250 bubbles per interval.
17-03-18 02:31:48.504 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.990831,
17-03-18 02:31:48.994 -07 000000501 INF: WaitCommand(10000) end
17-03-18 02:31:48.994 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:31:48.994 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:31:48.994 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:49.024 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:31:49.024 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:31:49.024 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:31:49.154 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:31:49.194 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:51.484 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:31:51.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:31:53.864 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.978563,
17-03-18 02:31:55.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:55.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:55.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:55.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:56.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:56.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:56.484 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:31:56.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:31:56.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:56.704 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:31:57.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:57.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:57.154 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:31:57.154 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:31:57.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:57.314 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:31:57.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:31:57.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:57.474 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:31:57.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:31:57.474 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:31:57.604 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:31:57.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:58.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:31:58.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:31:58.094 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:31:58.094 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:31:59.224 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.979922,
17-03-18 02:31:59.314 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:31:59.314 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:31:59.314 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:31:59.334 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:31:59.334 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:31:59.334 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:31:59.544 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:31:59.564 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:31:59.564 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:31:59.614 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:31:59.634 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:31:59.634 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:31:59.734 -07 000000610 INF: =================== Cycle #101, Pumping Reagent IMT (1) ===================
17-03-18 02:31:59.734 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:31:59.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:31:59.764 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:31:59.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:31:59.764 -07 000000610 INF: =================== Cycle #101, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:31:59.894 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:31:59.934 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:32:01.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:32:01.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:32:01.484 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:01.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:01.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:32:01.854 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:01.854 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:32:01.854 -07 000000610 INF: =================== Cycle #101, Pumping Reagent IMT (1) ===================
17-03-18 02:32:01.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:32:02.014 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:32:02.014 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:32:02.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:32:02.174 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:32:02.174 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:32:02.174 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:32:02.304 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:32:02.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:02.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:32:02.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:02.794 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:32:02.794 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:32:04.014 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:32:04.014 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:32:04.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:32:04.034 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:32:04.034 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:32:04.034 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:32:04.264 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:32:04.284 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:32:04.284 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:32:04.334 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:32:04.354 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:32:04.354 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:32:04.454 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:32:04.454 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:32:04.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:32:04.484 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:32:04.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:32:04.484 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:32:04.584 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.990831,
17-03-18 02:32:04.614 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:32:04.654 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:32:05.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:32:05.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:05.554 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:32:05.554 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:32:05.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:32:05.714 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:32:05.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:32:05.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:32:05.874 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:32:05.874 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:32:05.874 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:32:06.004 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:32:06.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:06.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:32:06.484 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:06.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:06.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:06.494 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:32:06.494 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:32:06.494 -07 000000610 INF: =================== Cycle #101, Flow Cell Temp 65° ===================
17-03-18 02:32:06.494 -07 000000610 INF: =================== Cycle #101, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:32:06.494 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:32:06.494 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:32:06.504 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:32:06.504 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:32:06.504 -07 000000455 INF: FPGA: Recv TEC2EN 
17-03-18 02:32:06.514 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:32:06.514 -07 000000610 INF: =================== Cycle #101, Flow Cell Temp 65° ===================
17-03-18 02:32:06.514 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:32:06.514 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:32:09.944 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.986717,
17-03-18 02:32:11.484 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:11.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:15.304 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.973092,
17-03-18 02:32:16.484 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:16.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:20.664 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.043918,
17-03-18 02:32:21.484 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:21.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:26.024 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.046637,
17-03-18 02:32:26.484 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:26.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:31.384 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.023489,
17-03-18 02:32:31.484 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:31.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:36.484 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:36.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:36.524 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:32:36.524 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:32:36.524 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:32:36.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:32:36.654 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:32:36.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:32:36.654 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:32:36.744 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.015368,
17-03-18 02:32:36.784 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:32:36.824 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:32:37.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:32:37.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:37.394 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 02:32:37.394 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:32:37.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:32:37.554 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:32:37.554 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:32:37.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:32:37.714 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:32:37.714 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:32:37.714 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:32:37.844 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:32:37.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:38.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:32:38.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:38.334 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:32:38.334 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:32:38.334 -07 000000591 INF: WaitCommand(30000) start
17-03-18 02:32:38.334 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:32:38.334 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:32:39.554 -07 000000512 INF: AsyncDelayTimer waited 1215ms
17-03-18 02:32:39.554 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 02:32:39.584 -07 000000512 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:32:39.584 -07 000000512 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:32:39.714 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:32:39.754 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:32:41.484 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:41.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:42.094 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 02:32:42.104 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.996267,
17-03-18 02:32:42.124 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:32:42.544 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 02:32:42.574 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:32:42.574 -07 000000512 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 02:32:42.574 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:32:42.574 -07 000000512 INF: ===================  ===================
17-03-18 02:32:46.484 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:46.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:47.464 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.009895,
17-03-18 02:32:51.484 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:51.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:52.824 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.014009,
17-03-18 02:32:56.484 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:32:56.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:32:58.184 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.988112,
17-03-18 02:33:01.484 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:33:01.484 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:33:03.544 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.974486,
17-03-18 02:33:06.484 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:33:06.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1505, R2=1568, Total=3073. Warn if over 250 bubbles per interval.
17-03-18 02:33:08.344 -07 000000591 INF: WaitCommand(30000) end
17-03-18 02:33:08.344 -07 000000610 INF: =================== Cycle #101, Flow Cell Temp 22° ===================
17-03-18 02:33:08.344 -07 000000610 INF: =================== Cycle #101, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:33:08.414 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:33:08.414 -07 000000579 INF: FPGA: Recv TEC2EN 
17-03-18 02:33:08.424 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:08.424 -07 000000610 INF: =================== Cycle #101, Flow Cell Temp 22° ===================
17-03-18 02:33:08.424 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:33:08.424 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:33:08.424 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:33:08.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:33:08.464 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:33:08.464 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:33:08.464 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:33:08.594 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:33:08.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:33:08.904 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.96762,
17-03-18 02:33:11.484 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 02:33:11.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1507, R2=1570, Total=3077. Warn if over 250 bubbles per interval.
17-03-18 02:33:11.764 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:11.794 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:33:12.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:12.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:33:12.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:12.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:12.694 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:33:12.694 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:33:12.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:33:12.854 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:33:12.854 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:33:12.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:33:13.014 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:33:13.014 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:33:13.014 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:33:13.144 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:33:13.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:13.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:13.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:13.634 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:33:13.634 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:33:14.264 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.981281,
17-03-18 02:33:14.854 -07 000000610 INF: AsyncDelayTimer waited 1220ms
17-03-18 02:33:14.854 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:33:14.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:33:14.874 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:33:14.874 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:33:14.874 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:33:15.024 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:33:15.044 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:33:15.044 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:33:15.094 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:33:15.114 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:33:15.114 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:33:15.214 -07 000000610 INF: =================== Cycle #101, Pumping Reagent USM (2) ===================
17-03-18 02:33:15.214 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:33:15.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:33:15.244 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:33:15.244 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:33:15.244 -07 000000610 INF: =================== Cycle #101, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:33:15.374 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:33:15.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:33:16.484 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-18 02:33:16.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1509, R2=1573, Total=3082. Warn if over 250 bubbles per interval.
17-03-18 02:33:16.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:16.884 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:33:17.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:17.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:17.334 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:33:17.334 -07 000000610 INF: =================== Cycle #101, Pumping Reagent USM (2) ===================
17-03-18 02:33:17.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:33:17.494 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:33:17.494 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:33:17.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:33:17.654 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:33:17.654 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:33:17.654 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:33:17.784 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:33:17.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:18.244 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:18.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:18.274 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:33:18.274 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:33:19.494 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:33:19.494 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:33:19.494 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:33:19.514 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:33:19.514 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:33:19.514 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:33:19.624 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.028963,
17-03-18 02:33:19.664 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:33:19.684 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:33:19.684 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:33:19.734 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:33:19.754 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:33:19.754 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:33:19.854 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:33:19.854 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:33:19.854 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:33:19.884 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:33:19.884 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:33:19.884 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:33:20.014 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:33:20.054 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:33:20.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:20.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:20.954 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:33:20.954 -07 000000610 INF: =================== Cycle #101, Pumping Reagent PR2 (3) ===================
17-03-18 02:33:21.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:33:21.114 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:33:21.114 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:33:21.244 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:33:21.274 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:33:21.274 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:33:21.274 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:33:21.404 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:33:21.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:21.494 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 02:33:21.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1573, Total=3083. Warn if over 250 bubbles per interval.
17-03-18 02:33:21.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:21.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:21.894 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:33:21.894 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:33:21.894 -07 000000561 INF: WaitCommand(10000) start
17-03-18 02:33:21.894 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:33:21.894 -07 000000467 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:33:23.114 -07 000000467 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:33:23.114 -07 000000467 INF: LanePump: Xmit /1?\r
17-03-18 02:33:23.144 -07 000000467 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:33:23.144 -07 000000467 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:33:23.274 -07 000000467 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:33:23.314 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:33:24.844 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:24.874 -07 000000467 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:33:24.984 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.009895,
17-03-18 02:33:25.294 -07 000000467 INF: LanePump: Xmit /1Q\r
17-03-18 02:33:25.324 -07 000000467 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:33:25.324 -07 000000467 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:33:25.324 -07 000000467 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:33:25.324 -07 000000467 INF: ===================  ===================
17-03-18 02:33:26.494 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:33:26.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1573, Total=3083. Warn if over 250 bubbles per interval.
17-03-18 02:33:30.344 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.027603,
17-03-18 02:33:31.494 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:33:31.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:33:31.904 -07 000000561 INF: WaitCommand(10000) end
17-03-18 02:33:31.904 -07 000000610 INF: =================== Cycle #101, Imaging ===================
17-03-18 02:33:31.904 -07 000000610 INF: Imaging Cycle 101: ScanTilesCommand Cycle 101 time start.
17-03-18 02:33:31.904 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:33:31.904 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:33:31.934 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:33:31.934 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:33:31.934 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:33:32.234 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:33:32.254 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:33:32.254 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:33:32.304 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:33:32.324 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:33:32.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:32.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:32.324 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:33:32.324 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:32.324 -07 000000569 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:33:32.324 -07 000000430 INF: FPGA: Recv EXLED1ON 
17-03-18 02:33:32.334 -07 000000569 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:33:32.334 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:33:32.334 -07 000000618 INF: FPGA: Recv EXLED1ADCR 23217
17-03-18 02:33:32.344 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:32.344 -07 000000569 INF: RedLED: Using Red data: Photodiode ADC 23217 --> 7.5 mW (old method), or 205.8 mW (new method). Difference = 198.3 mW
17-03-18 02:33:32.344 -07 000000569 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:33:32.344 -07 000000467 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:33:32.354 -07 000000569 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:32.354 -07 000000569 INF: RedLED: LED was on for 19 ms
17-03-18 02:33:32.354 -07 000000569 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 02:33:32.354 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:33:32.354 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:32.354 -07 000000569 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:33:32.354 -07 000000430 INF: FPGA: Recv EXLED2ON 
17-03-18 02:33:32.364 -07 000000569 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:33:32.364 -07 000000569 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:33:32.364 -07 000000461 INF: FPGA: Recv EXLED1ADCR 2097
17-03-18 02:33:32.374 -07 000000569 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:32.374 -07 000000569 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW
17-03-18 02:33:32.374 -07 000000569 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:33:32.374 -07 000000629 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:33:32.384 -07 000000569 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:32.384 -07 000000569 INF: GreenLED: LED was on for 21 ms
17-03-18 02:33:32.384 -07 000000569 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 29 ms.
17-03-18 02:33:32.384 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:33:32.384 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 02:33:32.394 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:33:32.394 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:33:32.894 -07 000000576 INF: FPGA: Recv EMOUT
17-03-18 02:33:32.894 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:33:32.894 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:33:32.894 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 02:33:32.904 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:32.904 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:33:32.904 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.384765625, Z-Position -0.126940290517149. ------
17-03-18 02:33:32.904 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:32.904 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17878 mm
17-03-18 02:33:32.904 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:33:32.914 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:32.914 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:33:32.914 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:33:32.914 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 39055, sync = True, waitForSettling = False)
17-03-18 02:33:32.914 -07 000000467 INF: Z Motor: Moving to -0.178782 mm, started at -0.126940 mm, distance = -51.84 um
17-03-18 02:33:32.914 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:33:32.914 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 75.3848 mm, delta = -15.4722 mm
17-03-18 02:33:32.924 -07 000000467 INF: FPGA: Xmit ZDACW 39055\n [Z Motor]
17-03-18 02:33:32.924 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:33:32.934 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:32.934 -07 000000467 INF: FPGA: 'ZDACW 39055' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:33:32.934 -07 000000606 INF: FPGA: Recv YRDPOS 154388
17-03-18 02:33:32.944 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:33:32.944 -07 000000512 INF: Y Motor: Encoder = 154388 = motor step 120615.6 = 75.3848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:32.944 -07 000000512 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:33:32.944 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:33:32.944 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:32.944 -07 000000461 INF: FPGA: Recv ZDACR 39055
17-03-18 02:33:32.954 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:33:32.954 -07 000000467 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:33:32.954 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:33:33.114 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:33:33.114 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:33:34.634 -07 000000618 INF: FPGA: Recv YMVTO 122703 24782
17-03-18 02:33:34.634 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1696 ms overall
17-03-18 02:33:34.634 -07 000000512 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:33:34.634 -07 000000512 INF: Y Motor: To move from 75.385 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-18 02:33:34.634 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1696 ms, distance = 15.472 mm, average velocity = 9.123 mm/sec
17-03-18 02:33:35.704 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.014009,
17-03-18 02:33:36.494 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:33:36.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:33:37.484 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:37.484 -07 000000502 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:33:37.494 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:37.494 -07 000000512 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:37.514 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:33:37.514 -07 000000512 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 02:33:37.514 -07 000000512 INF: Y Motor: Moved to 59.9106 after 4607 ms
17-03-18 02:33:37.524 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178782 mm (DAC = 39055)
17-03-18 02:33:37.524 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.524 -07 000000462 INF: FPGA: Recv ZSGSRD 37122
17-03-18 02:33:37.534 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:33:37.534 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.534 -07 000000576 INF: FPGA: Recv ZSGSRD 37122
17-03-18 02:33:37.544 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.544 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.544 -07 000000569 INF: FPGA: Recv ZSGSRD 37122
17-03-18 02:33:37.554 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.554 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.554 -07 000000444 INF: FPGA: Recv ZSGSRD 37121
17-03-18 02:33:37.564 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.564 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.564 -07 000000618 INF: FPGA: Recv ZSGSRD 37121
17-03-18 02:33:37.574 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.574 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.574 -07 000000591 INF: FPGA: Recv ZSGSRD 37115
17-03-18 02:33:37.584 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.584 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.584 -07 000000502 INF: FPGA: Recv ZSGSRD 37119
17-03-18 02:33:37.594 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.594 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.594 -07 000000512 INF: FPGA: Recv ZSGSRD 37121
17-03-18 02:33:37.604 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.604 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.604 -07 000000501 INF: FPGA: Recv ZSGSRD 37115
17-03-18 02:33:37.614 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.614 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:37.614 -07 000000618 INF: FPGA: Recv ZSGSRD 37121
17-03-18 02:33:37.624 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.624 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:37.624 -07 000000561 INF: FPGA: Recv ZPIEZORD 33406
17-03-18 02:33:37.634 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:37.634 -07 000000590 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.959 V. Piezo Error = -8.2 V.
17-03-18 02:33:37.634 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37120 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37121 (-177.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37115 (-177.9 uncal um), Max = 37122 (-177.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:33:37.634 -07 000000590 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37120, posNoise = 2, negNoise = 5
17-03-18 02:33:37.634 -07 000000590 INF: Z Motor: After move to -0.178782, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:37.634 -07 000000590 INF: Z Motor: Settle wait time = 4611 ms, measure time = 110 ms (allowed 150 ms), total time = 4721 ms
17-03-18 02:33:37.634 -07 000000590 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:33:37.674 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-18 02:33:37.674 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:33:37.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:37.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:37.674 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:37.674 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:37.674 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:33:37.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:37.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:33:37.674 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:33:37.704 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 02:33:37.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:33:37.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:33:37.704 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:33:37.714 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:33:37.714 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 02:33:37.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:33:37.764 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:33:38.064 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:33:38.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:33:38.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:33:38.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592212048, 0x0, 559484976) start.
17-03-18 02:33:38.104 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:33:38.104 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:33:38.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:33:38.194 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592212048, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:33:38.194 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:38.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:33:38.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:33:38.304 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:38.304 -07 000000462 INF: Image SNR check: start
17-03-18 02:33:38.304 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:38.314 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:38.314 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:33:38.314 -07 000000462 INF: Image SNR check: pass  [peak (Max-Min)=154.08]
17-03-18 02:33:38.314 -07 000000462 INF: Autofocus start
17-03-18 02:33:38.314 -07 000000462 INF: MeasureProfile start
17-03-18 02:33:38.324 -07 000000462 INF: MeasureProfile done
17-03-18 02:33:38.324 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:33:38.324 -07 000000462 INF: Autofocus finished
17-03-18 02:33:38.514 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:33:38.514 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:33:38.514 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178790106713302. ----------
17-03-18 02:33:38.514 -07 000000610 INF: Cycle	101	Tile	1	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:33:38.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37535, sync = True, waitForSettling = True)
17-03-18 02:33:38.524 -07 000000610 INF: Z Motor: Moving to -0.171824 mm, started at -0.178790 mm, distance = 6.97 um
17-03-18 02:33:38.524 -07 000000610 INF: FPGA: Xmit ZDACW 37535\n [Z Motor]
17-03-18 02:33:38.524 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:33:38.534 -07 000000610 INF: FPGA: 'ZDACW 37535' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:38.534 -07 000000501 INF: FPGA: Recv ZDACR 37535
17-03-18 02:33:38.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:33:38.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.694 -07 000000591 INF: FPGA: Recv ZSGSRD 36034
17-03-18 02:33:38.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:38.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.704 -07 000000629 INF: FPGA: Recv ZSGSRD 36034
17-03-18 02:33:38.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.714 -07 000000467 INF: FPGA: Recv ZSGSRD 36039
17-03-18 02:33:38.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.724 -07 000000618 INF: FPGA: Recv ZSGSRD 36037
17-03-18 02:33:38.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.734 -07 000000430 INF: FPGA: Recv ZSGSRD 36038
17-03-18 02:33:38.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.744 -07 000000591 INF: FPGA: Recv ZSGSRD 36037
17-03-18 02:33:38.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.754 -07 000000444 INF: FPGA: Recv ZSGSRD 36035
17-03-18 02:33:38.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.764 -07 000000461 INF: FPGA: Recv ZSGSRD 36039
17-03-18 02:33:38.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.774 -07 000000576 INF: FPGA: Recv ZSGSRD 36029
17-03-18 02:33:38.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:38.784 -07 000000455 INF: FPGA: Recv ZSGSRD 36035
17-03-18 02:33:38.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:38.794 -07 000000462 INF: FPGA: Recv ZPIEZORD 31952
17-03-18 02:33:38.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:38.804 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -9.0 V.
17-03-18 02:33:38.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36036 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36036 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36029 (-170.9 uncal um), Max = 36039 (-171.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:33:38.804 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36036, posNoise = 3, negNoise = 7
17-03-18 02:33:38.804 -07 000000610 INF: Z Motor: After move to -0.171824, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:38.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:33:38.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:38.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:38.804 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:38.804 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:38.804 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:33:38.804 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:38.804 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:33:38.804 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:33:38.804 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:33:38.804 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:33:38.804 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:33:38.804 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:33:38.814 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:33:38.814 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:33:38.824 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:33:38.824 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:33:38.824 -07 000000455 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 02:33:38.824 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:33:38.834 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:33:38.834 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:33:38.844 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:33:38.844 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 02:33:38.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37712 150\n [Camera]
17-03-18 02:33:39.044 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:33:39.444 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:33:39.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:33:39.444 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:39.444 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:33:39.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:33:39.444 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:39.454 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:39.454 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) start.
17-03-18 02:33:39.454 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:39.454 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) start.
17-03-18 02:33:39.634 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37712 781
17-03-18 02:33:39.784 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:33:39.854 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1151452432, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:33:39.854 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:33:39.854 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:39.854 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1116030168, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:33:39.854 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:33:39.854 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:39.864 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:39.864 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 02:33:39.864 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:33:39.864 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 02:33:39.974 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-18 02:33:39.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-18 02:33:39.974 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:40.094 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-18 02:33:40.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-18 02:33:40.094 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:40.094 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:33:40.094 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:40.094 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:40.094 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:33:40.164 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:33:40.164 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:33:40.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37712 150' command took 2 ms to send, 1308 ms to get response, and 1321 ms overall
17-03-18 02:33:40.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:33:40.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.171826260751633. ------
17-03-18 02:33:40.174 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:40.174 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17780 mm
17-03-18 02:33:40.174 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:33:40.174 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:33:40.174 -07 000000561 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 02:33:40.174 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38840, sync = True, waitForSettling = False)
17-03-18 02:33:40.174 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:40.174 -07 000000576 INF: Z Motor: Moving to -0.177798 mm, started at -0.171826 mm, distance = -5.97 um
17-03-18 02:33:40.184 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:33:40.184 -07 000000576 INF: FPGA: Xmit ZDACW 38840\n [Z Motor]
17-03-18 02:33:40.184 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:33:40.194 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:40.194 -07 000000576 INF: FPGA: 'ZDACW 38840' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:33:40.194 -07 000000579 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:33:40.204 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:33:40.204 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:33:40.204 -07 000000561 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:40.204 -07 000000561 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:33:40.204 -07 000000561 INF: Y Motor: Moving 1331 steps2
17-03-18 02:33:40.214 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:40.214 -07 000000501 INF: FPGA: Recv ZDACR 38840
17-03-18 02:33:40.224 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:33:40.224 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:33:40.224 -07 000000576 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:33:40.404 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:33:40.404 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:33:40.494 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:33:40.494 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:33:40.494 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:40.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:33:40.504 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:33:40.504 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:40.504 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:40.504 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-18 02:33:40.504 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:33:40.514 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:33:40.594 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:33:40.594 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:33:40.634 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:40.634 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:33:40.644 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:33:40.644 -07 000000561 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:40.644 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:33:40.644 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.832 mm, average velocity = 2.106 mm/sec
17-03-18 02:33:41.064 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.02213,
17-03-18 02:33:41.494 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:33:41.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:33:41.594 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:41.594 -07 000000629 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:33:41.604 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:41.604 -07 000000561 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:41.624 -07 000000561 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:33:41.624 -07 000000561 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:33:41.624 -07 000000561 INF: Y Motor: Moved to 60.7334 after 1451 ms (table move)
17-03-18 02:33:41.634 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177798 mm (DAC = 38840)
17-03-18 02:33:41.634 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.634 -07 000000590 INF: FPGA: Recv ZSGSRD 36968
17-03-18 02:33:41.644 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:41.644 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.644 -07 000000501 INF: FPGA: Recv ZSGSRD 36962
17-03-18 02:33:41.654 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.654 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.654 -07 000000444 INF: FPGA: Recv ZSGSRD 36970
17-03-18 02:33:41.664 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.664 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.664 -07 000000618 INF: FPGA: Recv ZSGSRD 36970
17-03-18 02:33:41.674 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.674 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.674 -07 000000502 INF: FPGA: Recv ZSGSRD 36959
17-03-18 02:33:41.684 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.684 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.684 -07 000000424 INF: FPGA: Recv ZSGSRD 36972
17-03-18 02:33:41.694 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.694 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.694 -07 000000626 INF: FPGA: Recv ZSGSRD 36964
17-03-18 02:33:41.704 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.704 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.704 -07 000000591 INF: FPGA: Recv ZSGSRD 36969
17-03-18 02:33:41.714 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.714 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.714 -07 000000461 INF: FPGA: Recv ZSGSRD 36963
17-03-18 02:33:41.724 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.724 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:41.724 -07 000000579 INF: FPGA: Recv ZSGSRD 36965
17-03-18 02:33:41.734 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.734 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:41.734 -07 000000569 INF: FPGA: Recv ZPIEZORD 33200
17-03-18 02:33:41.744 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:41.744 -07 000000455 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.3 V.
17-03-18 02:33:41.744 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36966 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36966 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36959 (-176.9 uncal um), Max = 36972 (-176.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:33:41.744 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36966, posNoise = 6, negNoise = 7
17-03-18 02:33:41.744 -07 000000455 INF: Z Motor: After move to -0.177798, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:41.744 -07 000000455 INF: Z Motor: Settle wait time = 1455 ms, measure time = 107 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:33:41.744 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:33:41.794 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:33:41.794 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:33:41.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:41.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:41.794 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:41.794 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:41.794 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:33:41.794 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:41.794 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:33:41.794 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:33:41.804 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:33:41.804 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:33:41.814 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:33:41.814 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:33:41.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:33:41.864 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:33:42.164 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:33:42.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:33:42.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:33:42.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592212048, 0x0, 559484976) start.
17-03-18 02:33:42.204 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:33:42.204 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:33:42.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 02:33:42.294 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592212048, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:33:42.294 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:42.294 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:33:42.294 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:33:42.304 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:42.304 -07 000000626 INF: Autofocus start
17-03-18 02:33:42.304 -07 000000626 INF: MeasureProfile start
17-03-18 02:33:42.304 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:42.314 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:33:42.314 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:33:42.314 -07 000000626 INF: MeasureProfile done
17-03-18 02:33:42.314 -07 000000626 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:33:42.314 -07 000000626 INF: Autofocus finished
17-03-18 02:33:42.514 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:33:42.514 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:33:42.514 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.17780077804347. ----------
17-03-18 02:33:42.514 -07 000000610 INF: Cycle	101	Tile	2	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:33:42.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37390, sync = True, waitForSettling = True)
17-03-18 02:33:42.524 -07 000000610 INF: Z Motor: Moving to -0.171160 mm, started at -0.177801 mm, distance = 6.64 um
17-03-18 02:33:42.524 -07 000000610 INF: FPGA: Xmit ZDACW 37390\n [Z Motor]
17-03-18 02:33:42.524 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:33:42.534 -07 000000610 INF: FPGA: 'ZDACW 37390' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:33:42.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:42.534 -07 000000591 INF: FPGA: Recv ZDACR 37390
17-03-18 02:33:42.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:33:42.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.694 -07 000000424 INF: FPGA: Recv ZSGSRD 35932
17-03-18 02:33:42.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:42.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.704 -07 000000579 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:33:42.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.714 -07 000000606 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:33:42.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.724 -07 000000618 INF: FPGA: Recv ZSGSRD 35931
17-03-18 02:33:42.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.734 -07 000000591 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:33:42.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.744 -07 000000561 INF: FPGA: Recv ZSGSRD 35932
17-03-18 02:33:42.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.754 -07 000000462 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:33:42.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.764 -07 000000430 INF: FPGA: Recv ZSGSRD 35939
17-03-18 02:33:42.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.774 -07 000000579 INF: FPGA: Recv ZSGSRD 35932
17-03-18 02:33:42.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:42.784 -07 000000502 INF: FPGA: Recv ZSGSRD 35932
17-03-18 02:33:42.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:42.794 -07 000000444 INF: FPGA: Recv ZPIEZORD 31801
17-03-18 02:33:42.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:42.804 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.705 V. Piezo Error = -9.1 V.
17-03-18 02:33:42.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35934 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35933 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35931 (-170.3 uncal um), Max = 35939 (-170.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:33:42.804 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35934, posNoise = 5, negNoise = 3
17-03-18 02:33:42.804 -07 000000610 INF: Z Motor: After move to -0.171160, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:42.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:33:42.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:42.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:42.804 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:42.804 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:42.804 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:33:42.804 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:42.804 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:33:42.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:33:42.804 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:33:42.804 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:33:42.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:33:42.804 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:33:42.814 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:33:42.814 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:33:42.814 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:33:42.814 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:33:42.824 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:33:42.824 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:33:42.824 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:33:42.824 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:33:42.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37567 150\n [Camera]
17-03-18 02:33:43.034 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:33:43.424 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:33:43.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:33:43.424 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:43.424 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:43.424 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:33:43.434 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:33:43.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:33:43.434 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:43.434 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:43.434 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:33:43.614 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37567 781
17-03-18 02:33:43.764 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:33:43.824 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:33:43.824 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:33:43.824 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:43.824 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:33:43.824 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:43.824 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:33:43.824 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:33:43.824 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:43.834 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:43.834 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:33:43.954 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:33:43.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:33:43.964 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:43.964 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:43.964 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:33:43.964 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:33:43.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:33:43.964 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:43.964 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:43.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:33:44.154 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:33:44.154 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:33:44.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37567 150' command took 2 ms to send, 1311 ms to get response, and 1321 ms overall
17-03-18 02:33:44.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:33:44.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.171170991113173. ------
17-03-18 02:33:44.154 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:44.154 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17787 mm
17-03-18 02:33:44.154 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:33:44.154 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:33:44.274 -07 000000444 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-18 02:33:44.274 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38856, sync = True, waitForSettling = False)
17-03-18 02:33:44.274 -07 000000561 INF: Z Motor: Moving to -0.177871 mm, started at -0.171171 mm, distance = -6.70 um
17-03-18 02:33:44.274 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:44.274 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 120 ms overall
17-03-18 02:33:44.274 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:44.284 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:33:44.284 -07 000000590 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:33:44.284 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:33:44.284 -07 000000444 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:44.284 -07 000000444 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:33:44.284 -07 000000444 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:33:44.294 -07 000000561 INF: FPGA: Xmit ZDACW 38856\n [Z Motor]
17-03-18 02:33:44.294 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:33:44.304 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:33:44.304 -07 000000561 INF: FPGA: 'ZDACW 38856' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:33:44.314 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:44.314 -07 000000430 INF: FPGA: Recv ZDACR 38856
17-03-18 02:33:44.324 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:33:44.324 -07 000000561 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:33:44.364 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:33:44.364 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:33:44.364 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:44.364 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:33:44.364 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:33:44.364 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:44.364 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:44.364 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:33:44.364 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:33:44.374 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:33:44.484 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:33:44.484 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 205 ms overall
17-03-18 02:33:44.674 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:33:44.674 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:33:44.724 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:44.724 -07 000000561 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:33:44.734 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:33:44.734 -07 000000444 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:44.734 -07 000000444 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:33:44.734 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 02:33:45.684 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:45.684 -07 000000569 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:33:45.694 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:45.694 -07 000000444 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:45.724 -07 000000444 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:33:45.724 -07 000000444 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:33:45.724 -07 000000444 INF: Y Motor: Moved to 61.5640 after 1450 ms (table move)
17-03-18 02:33:45.724 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177871 mm (DAC = 38856)
17-03-18 02:33:45.724 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.734 -07 000000606 INF: FPGA: Recv ZSGSRD 36979
17-03-18 02:33:45.734 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-18 02:33:45.734 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.734 -07 000000502 INF: FPGA: Recv ZSGSRD 36983
17-03-18 02:33:45.744 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:45.744 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.744 -07 000000424 INF: FPGA: Recv ZSGSRD 36978
17-03-18 02:33:45.754 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:45.754 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.754 -07 000000461 INF: FPGA: Recv ZSGSRD 36978
17-03-18 02:33:45.764 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:45.764 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.764 -07 000000579 INF: FPGA: Recv ZSGSRD 36981
17-03-18 02:33:45.774 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:45.774 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.774 -07 000000455 INF: FPGA: Recv ZSGSRD 36975
17-03-18 02:33:45.784 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:45.784 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.784 -07 000000591 INF: FPGA: Recv ZSGSRD 36984
17-03-18 02:33:45.794 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:45.794 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.794 -07 000000576 INF: FPGA: Recv ZSGSRD 36969
17-03-18 02:33:45.804 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:45.804 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.804 -07 000000462 INF: FPGA: Recv ZSGSRD 36974
17-03-18 02:33:45.814 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:45.814 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:45.814 -07 000000502 INF: FPGA: Recv ZSGSRD 36976
17-03-18 02:33:45.824 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:45.824 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:45.824 -07 000000444 INF: FPGA: Recv ZPIEZORD 33236
17-03-18 02:33:45.834 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:45.834 -07 000000626 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.3 V.
17-03-18 02:33:45.834 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36978 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36978 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36969 (-176.9 uncal um), Max = 36984 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:33:45.834 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36978, posNoise = 6, negNoise = 9
17-03-18 02:33:45.834 -07 000000626 INF: Z Motor: After move to -0.177871, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:45.834 -07 000000626 INF: Z Motor: Settle wait time = 1452 ms, measure time = 102 ms (allowed 150 ms), total time = 1554 ms
17-03-18 02:33:45.834 -07 000000626 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:33:45.884 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-18 02:33:45.884 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:33:45.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:45.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:45.884 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:45.884 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:45.884 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:33:45.884 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:45.884 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:33:45.884 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:33:45.894 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:33:45.894 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:33:45.894 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:33:45.894 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:33:45.924 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:33:45.964 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:33:46.264 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:33:46.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:33:46.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:33:46.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:33:46.304 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:33:46.304 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:33:46.304 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 403 ms overall
17-03-18 02:33:46.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:33:46.384 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:46.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:33:46.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:33:46.404 -07 000000606 INF: Autofocus start
17-03-18 02:33:46.404 -07 000000606 INF: MeasureProfile start
17-03-18 02:33:46.404 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:46.404 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:46.414 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:46.414 -07 000000606 INF: MeasureProfile done
17-03-18 02:33:46.414 -07 000000606 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:33:46.414 -07 000000606 INF: Autofocus finished
17-03-18 02:33:46.424 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:33:46.424 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.997626,
17-03-18 02:33:46.494 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:33:46.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:33:46.624 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:33:46.624 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:33:46.624 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.177877868589172. ----------
17-03-18 02:33:46.624 -07 000000610 INF: Cycle	101	Tile	3	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:33:46.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37389, sync = True, waitForSettling = True)
17-03-18 02:33:46.634 -07 000000610 INF: Z Motor: Moving to -0.171156 mm, started at -0.177878 mm, distance = 6.72 um
17-03-18 02:33:46.634 -07 000000610 INF: FPGA: Xmit ZDACW 37389\n [Z Motor]
17-03-18 02:33:46.634 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:33:46.644 -07 000000610 INF: FPGA: 'ZDACW 37389' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:33:46.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:46.644 -07 000000629 INF: FPGA: Recv ZDACR 37389
17-03-18 02:33:46.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:33:46.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.804 -07 000000501 INF: FPGA: Recv ZSGSRD 35929
17-03-18 02:33:46.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:46.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.814 -07 000000576 INF: FPGA: Recv ZSGSRD 35943
17-03-18 02:33:46.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.824 -07 000000579 INF: FPGA: Recv ZSGSRD 35926
17-03-18 02:33:46.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.834 -07 000000626 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:33:46.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.844 -07 000000424 INF: FPGA: Recv ZSGSRD 35933
17-03-18 02:33:46.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.854 -07 000000512 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:33:46.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.864 -07 000000444 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:33:46.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.874 -07 000000467 INF: FPGA: Recv ZSGSRD 35933
17-03-18 02:33:46.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.884 -07 000000430 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:33:46.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:46.894 -07 000000462 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:33:46.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:46.904 -07 000000502 INF: FPGA: Recv ZPIEZORD 31840
17-03-18 02:33:46.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:46.914 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.705 V. Piezo Error = -9.0 V.
17-03-18 02:33:46.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35934 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35934 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35926 (-170.2 uncal um), Max = 35943 (-170.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:33:46.914 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35934, posNoise = 9, negNoise = 8
17-03-18 02:33:46.914 -07 000000610 INF: Z Motor: After move to -0.171156, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:46.914 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:33:46.914 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:46.914 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:46.914 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:46.914 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:46.914 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:33:46.914 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:33:46.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:46.914 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:33:46.914 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:33:46.914 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:33:46.914 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:33:46.914 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:33:46.924 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:33:46.924 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:33:46.924 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:33:46.924 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:33:46.934 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:33:46.934 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:33:46.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:33:46.934 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:33:46.934 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37566 150\n [Camera]
17-03-18 02:33:47.134 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:33:47.534 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:33:47.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:33:47.534 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:47.534 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:33:47.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:33:47.534 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:47.534 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:47.544 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:33:47.544 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:47.544 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:33:47.724 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37566 781
17-03-18 02:33:47.874 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:33:47.934 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:33:47.934 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:33:47.934 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:47.934 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:33:47.934 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:47.934 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:33:47.934 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:47.934 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:47.944 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:33:47.944 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:33:48.064 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:33:48.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:33:48.064 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:48.074 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:48.074 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:33:48.074 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:33:48.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:33:48.074 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:48.074 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:48.074 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:33:48.254 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:33:48.264 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:33:48.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37566 150' command took 2 ms to send, 1310 ms to get response, and 1321 ms overall
17-03-18 02:33:48.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:33:48.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171170991113173. ------
17-03-18 02:33:48.264 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:48.264 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17745 mm
17-03-18 02:33:48.264 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:33:48.264 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:33:48.264 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:33:48.264 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38764, sync = True, waitForSettling = False)
17-03-18 02:33:48.264 -07 000000502 INF: Z Motor: Moving to -0.177450 mm, started at -0.171171 mm, distance = -6.28 um
17-03-18 02:33:48.264 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:48.274 -07 000000502 INF: FPGA: Xmit ZDACW 38764\n [Z Motor]
17-03-18 02:33:48.274 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:48.274 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:33:48.284 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:48.284 -07 000000502 INF: FPGA: 'ZDACW 38764' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:33:48.284 -07 000000569 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:33:48.294 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:33:48.294 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:33:48.294 -07 000000561 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:48.294 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:33:48.294 -07 000000561 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:33:48.304 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:48.304 -07 000000629 INF: FPGA: Recv ZDACR 38764
17-03-18 02:33:48.314 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:33:48.314 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:33:48.314 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:33:48.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:33:48.464 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:33:48.464 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:48.464 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:33:48.464 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:33:48.464 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:48.464 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:48.474 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:48.474 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:33:48.474 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:33:48.494 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:33:48.494 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:33:48.684 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:33:48.684 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:33:48.734 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:48.734 -07 000000461 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:33:48.744 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:48.744 -07 000000561 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:48.744 -07 000000561 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:33:48.744 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-18 02:33:49.694 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:49.694 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:33:49.704 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:49.704 -07 000000561 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:49.724 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:33:49.724 -07 000000561 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:33:49.724 -07 000000561 INF: Y Motor: Moved to 62.3955 after 1460 ms (table move)
17-03-18 02:33:49.734 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177450 mm (DAC = 38764)
17-03-18 02:33:49.734 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.734 -07 000000502 INF: FPGA: Recv ZSGSRD 36906
17-03-18 02:33:49.744 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:33:49.744 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.744 -07 000000618 INF: FPGA: Recv ZSGSRD 36913
17-03-18 02:33:49.754 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.754 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.754 -07 000000629 INF: FPGA: Recv ZSGSRD 36917
17-03-18 02:33:49.764 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.764 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.764 -07 000000444 INF: FPGA: Recv ZSGSRD 36914
17-03-18 02:33:49.774 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.774 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.774 -07 000000606 INF: FPGA: Recv ZSGSRD 36901
17-03-18 02:33:49.784 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.784 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.784 -07 000000430 INF: FPGA: Recv ZSGSRD 36912
17-03-18 02:33:49.794 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.794 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.794 -07 000000462 INF: FPGA: Recv ZSGSRD 36914
17-03-18 02:33:49.804 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.804 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.804 -07 000000424 INF: FPGA: Recv ZSGSRD 36909
17-03-18 02:33:49.814 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.814 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.814 -07 000000579 INF: FPGA: Recv ZSGSRD 36912
17-03-18 02:33:49.824 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.824 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:49.824 -07 000000462 INF: FPGA: Recv ZSGSRD 36915
17-03-18 02:33:49.834 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.834 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:49.834 -07 000000629 INF: FPGA: Recv ZPIEZORD 33150
17-03-18 02:33:49.844 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:49.844 -07 000000590 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.915 V. Piezo Error = -8.3 V.
17-03-18 02:33:49.844 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36911 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36912 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36901 (-176.5 uncal um), Max = 36917 (-176.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:33:49.844 -07 000000590 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36911, posNoise = 6, negNoise = 10
17-03-18 02:33:49.844 -07 000000590 INF: Z Motor: After move to -0.177450, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:49.844 -07 000000590 INF: Z Motor: Settle wait time = 1464 ms, measure time = 108 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:33:49.844 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:33:49.894 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:33:49.894 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:33:49.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:49.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:49.894 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:49.894 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:33:49.894 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:49.894 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:49.894 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:33:49.894 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:33:49.904 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:33:49.904 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:33:49.904 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:33:49.904 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:33:49.914 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:33:49.954 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:33:50.254 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:33:50.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:33:50.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:33:50.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:33:50.294 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:33:50.294 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:33:50.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:33:50.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:33:50.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:50.384 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:33:50.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:33:50.394 -07 000000502 INF: Autofocus start
17-03-18 02:33:50.394 -07 000000502 INF: MeasureProfile start
17-03-18 02:33:50.394 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:50.394 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:50.404 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:33:50.404 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:33:50.414 -07 000000502 INF: MeasureProfile done
17-03-18 02:33:50.414 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:33:50.414 -07 000000502 INF: Autofocus finished
17-03-18 02:33:50.604 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:33:50.604 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:33:50.604 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177447446375674. ----------
17-03-18 02:33:50.614 -07 000000610 INF: Cycle	101	Tile	4	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:33:50.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37261, sync = True, waitForSettling = True)
17-03-18 02:33:50.614 -07 000000610 INF: Z Motor: Moving to -0.170570 mm, started at -0.177447 mm, distance = 6.88 um
17-03-18 02:33:50.614 -07 000000610 INF: FPGA: Xmit ZDACW 37261\n [Z Motor]
17-03-18 02:33:50.614 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:33:50.624 -07 000000610 INF: FPGA: 'ZDACW 37261' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:50.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:50.624 -07 000000467 INF: FPGA: Recv ZDACR 37261
17-03-18 02:33:50.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:33:50.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.784 -07 000000579 INF: FPGA: Recv ZSGSRD 35846
17-03-18 02:33:50.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.794 -07 000000591 INF: FPGA: Recv ZSGSRD 35846
17-03-18 02:33:50.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.804 -07 000000444 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:33:50.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.814 -07 000000606 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:33:50.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.824 -07 000000424 INF: FPGA: Recv ZSGSRD 35847
17-03-18 02:33:50.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.834 -07 000000606 INF: FPGA: Recv ZSGSRD 35842
17-03-18 02:33:50.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.844 -07 000000462 INF: FPGA: Recv ZSGSRD 35848
17-03-18 02:33:50.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.854 -07 000000444 INF: FPGA: Recv ZSGSRD 35842
17-03-18 02:33:50.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.864 -07 000000501 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:33:50.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:50.874 -07 000000561 INF: FPGA: Recv ZSGSRD 35839
17-03-18 02:33:50.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:50.884 -07 000000424 INF: FPGA: Recv ZPIEZORD 31733
17-03-18 02:33:50.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:50.894 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.1 V.
17-03-18 02:33:50.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35843 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35842 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35839 (-169.7 uncal um), Max = 35848 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:33:50.894 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35843, posNoise = 5, negNoise = 4
17-03-18 02:33:50.894 -07 000000610 INF: Z Motor: After move to -0.170570, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:50.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:33:50.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:50.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:50.894 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:33:50.894 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:50.894 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:33:50.894 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:33:50.894 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:50.894 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:33:50.894 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:33:50.894 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:50.894 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:33:50.894 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:33:50.894 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:33:50.894 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:33:50.904 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:33:50.904 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:33:50.914 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:33:50.914 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:33:50.914 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:33:50.914 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:33:50.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37438 150\n [Camera]
17-03-18 02:33:51.124 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:33:51.494 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:33:51.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:33:51.514 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:33:51.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:33:51.514 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:51.514 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:51.514 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:33:51.514 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:33:51.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:33:51.524 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:51.524 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:51.524 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:33:51.704 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37438 781
17-03-18 02:33:51.794 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.005817,
17-03-18 02:33:51.854 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:33:51.914 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:33:51.914 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:33:51.914 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:51.914 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:33:51.914 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:33:51.914 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:51.914 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:51.914 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:33:51.924 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:51.924 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:33:52.044 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:33:52.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:33:52.054 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:52.054 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:52.054 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:33:52.054 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:33:52.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:33:52.054 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:52.054 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:52.054 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:33:52.244 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:33:52.244 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:33:52.244 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37438 150' command took 2 ms to send, 1311 ms to get response, and 1321 ms overall
17-03-18 02:33:52.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:33:52.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170586387808273. ------
17-03-18 02:33:52.244 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:52.244 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17720 mm
17-03-18 02:33:52.244 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:33:52.244 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:33:52.244 -07 000000462 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:33:52.244 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 38709, sync = True, waitForSettling = False)
17-03-18 02:33:52.244 -07 000000455 INF: Z Motor: Moving to -0.177198 mm, started at -0.170586 mm, distance = -6.61 um
17-03-18 02:33:52.244 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:52.254 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:33:52.254 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:52.254 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:33:52.264 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:52.264 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:52.264 -07 000000462 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:33:52.264 -07 000000462 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:33:52.264 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:33:52.274 -07 000000455 INF: FPGA: Xmit ZDACW 38709\n [Z Motor]
17-03-18 02:33:52.274 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:33:52.284 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:33:52.284 -07 000000455 INF: FPGA: 'ZDACW 38709' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:33:52.294 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:52.294 -07 000000444 INF: FPGA: Recv ZDACR 38709
17-03-18 02:33:52.304 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:33:52.304 -07 000000455 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:33:52.454 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:33:52.454 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:33:52.454 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:52.454 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:33:52.454 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:33:52.454 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:52.464 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:52.464 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:33:52.464 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:33:52.464 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:33:52.464 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 02:33:52.464 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:33:52.654 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:33:52.654 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:33:52.704 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:52.704 -07 000000569 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:33:52.714 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:52.714 -07 000000462 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:52.714 -07 000000462 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:33:52.714 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-18 02:33:53.664 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:53.664 -07 000000512 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:33:53.674 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.674 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:53.694 -07 000000462 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:33:53.694 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:33:53.694 -07 000000462 INF: Y Motor: Moved to 63.2241 after 1449 ms (table move)
17-03-18 02:33:53.704 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177198 mm (DAC = 38709)
17-03-18 02:33:53.704 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.704 -07 000000444 INF: FPGA: Recv ZSGSRD 36877
17-03-18 02:33:53.714 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:33:53.714 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.714 -07 000000606 INF: FPGA: Recv ZSGSRD 36872
17-03-18 02:33:53.724 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.724 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.724 -07 000000502 INF: FPGA: Recv ZSGSRD 36877
17-03-18 02:33:53.734 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.734 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.734 -07 000000467 INF: FPGA: Recv ZSGSRD 36870
17-03-18 02:33:53.744 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.744 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.744 -07 000000512 INF: FPGA: Recv ZSGSRD 36879
17-03-18 02:33:53.754 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.754 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.754 -07 000000467 INF: FPGA: Recv ZSGSRD 36877
17-03-18 02:33:53.764 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.764 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.764 -07 000000430 INF: FPGA: Recv ZSGSRD 36866
17-03-18 02:33:53.774 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.774 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.774 -07 000000444 INF: FPGA: Recv ZSGSRD 36870
17-03-18 02:33:53.784 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.784 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.784 -07 000000576 INF: FPGA: Recv ZSGSRD 36868
17-03-18 02:33:53.794 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.794 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:53.794 -07 000000579 INF: FPGA: Recv ZSGSRD 36873
17-03-18 02:33:53.804 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.804 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:53.804 -07 000000467 INF: FPGA: Recv ZPIEZORD 33118
17-03-18 02:33:53.814 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:53.814 -07 000000591 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.907 V. Piezo Error = -8.3 V.
17-03-18 02:33:53.814 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36873 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36872 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36866 (-176.3 uncal um), Max = 36879 (-176.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:33:53.814 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36873, posNoise = 6, negNoise = 7
17-03-18 02:33:53.814 -07 000000591 INF: Z Motor: After move to -0.177198, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:53.814 -07 000000591 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-18 02:33:53.814 -07 000000591 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:33:53.864 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:33:53.864 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:33:53.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:53.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:53.864 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:53.864 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:33:53.864 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:53.864 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:53.864 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:33:53.864 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:33:53.874 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:33:53.874 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:33:53.874 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 02:33:53.874 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:33:53.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:33:53.924 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:33:54.224 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:33:54.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:33:54.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:33:54.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:33:54.264 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:33:54.264 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:33:54.264 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:33:54.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:33:54.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:54.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:33:54.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:33:54.364 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:54.364 -07 000000626 INF: Autofocus start
17-03-18 02:33:54.364 -07 000000626 INF: MeasureProfile start
17-03-18 02:33:54.364 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:54.374 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:33:54.374 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:33:54.384 -07 000000626 INF: MeasureProfile done
17-03-18 02:33:54.384 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:33:54.384 -07 000000626 INF: Autofocus finished
17-03-18 02:33:54.574 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:33:54.574 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:33:54.574 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177203326314287. ----------
17-03-18 02:33:54.584 -07 000000610 INF: Cycle	101	Tile	5	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:33:54.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37206, sync = True, waitForSettling = True)
17-03-18 02:33:54.584 -07 000000610 INF: Z Motor: Moving to -0.170318 mm, started at -0.177203 mm, distance = 6.89 um
17-03-18 02:33:54.584 -07 000000610 INF: FPGA: Xmit ZDACW 37206\n [Z Motor]
17-03-18 02:33:54.584 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:33:54.594 -07 000000610 INF: FPGA: 'ZDACW 37206' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:33:54.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:54.594 -07 000000590 INF: FPGA: Recv ZDACR 37206
17-03-18 02:33:54.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:33:54.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.754 -07 000000501 INF: FPGA: Recv ZSGSRD 35802
17-03-18 02:33:54.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:54.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.764 -07 000000502 INF: FPGA: Recv ZSGSRD 35805
17-03-18 02:33:54.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.774 -07 000000606 INF: FPGA: Recv ZSGSRD 35801
17-03-18 02:33:54.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.784 -07 000000462 INF: FPGA: Recv ZSGSRD 35800
17-03-18 02:33:54.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.794 -07 000000461 INF: FPGA: Recv ZSGSRD 35809
17-03-18 02:33:54.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.804 -07 000000430 INF: FPGA: Recv ZSGSRD 35800
17-03-18 02:33:54.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.814 -07 000000591 INF: FPGA: Recv ZSGSRD 35804
17-03-18 02:33:54.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.824 -07 000000606 INF: FPGA: Recv ZSGSRD 35808
17-03-18 02:33:54.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.834 -07 000000618 INF: FPGA: Recv ZSGSRD 35806
17-03-18 02:33:54.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:54.844 -07 000000590 INF: FPGA: Recv ZSGSRD 35807
17-03-18 02:33:54.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:54.854 -07 000000512 INF: FPGA: Recv ZPIEZORD 31610
17-03-18 02:33:54.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:54.864 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.2 V.
17-03-18 02:33:54.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35804 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35804 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35800 (-169.4 uncal um), Max = 35809 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:33:54.864 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35804, posNoise = 5, negNoise = 4
17-03-18 02:33:54.864 -07 000000610 INF: Z Motor: After move to -0.170318, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:54.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:33:54.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:54.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:54.864 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:54.864 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:33:54.864 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:33:54.864 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:33:54.864 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:54.864 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:54.864 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:33:54.864 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:33:54.864 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:33:54.864 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:33:54.874 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:33:54.874 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:33:54.874 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:33:54.874 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:33:54.884 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:33:54.884 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:33:54.884 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:33:54.884 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:33:54.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37383 150\n [Camera]
17-03-18 02:33:55.084 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:33:55.484 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:33:55.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:33:55.484 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:55.484 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:33:55.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:33:55.484 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:55.494 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:55.494 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:33:55.494 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:55.494 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:33:55.674 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37383 781
17-03-18 02:33:55.824 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:33:55.884 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:33:55.884 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:33:55.884 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:55.884 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:55.884 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:33:55.884 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:33:55.884 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:33:55.884 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:55.894 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:55.894 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:33:56.014 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:33:56.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:33:56.014 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:56.014 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:33:56.014 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:56.014 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:33:56.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:33:56.014 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:56.014 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:56.014 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:33:56.204 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:33:56.204 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:33:56.204 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37383 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:33:56.204 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:33:56.204 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170335843534744. ------
17-03-18 02:33:56.334 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17645 mm
17-03-18 02:33:56.334 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:33:56.334 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:33:56.334 -07 000000501 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:33:56.334 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38545, sync = True, waitForSettling = False)
17-03-18 02:33:56.344 -07 000000561 INF: Z Motor: Moving to -0.176448 mm, started at -0.170336 mm, distance = -6.11 um
17-03-18 02:33:56.344 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:56.344 -07 000000467 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:33:56.354 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:56.354 -07 000000501 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:33:56.354 -07 000000501 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:56.354 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:56.354 -07 000000501 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:33:56.354 -07 000000501 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:33:56.364 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:33:56.364 -07 000000561 INF: FPGA: Xmit ZDACW 38545\n [Z Motor]
17-03-18 02:33:56.364 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:33:56.374 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:33:56.374 -07 000000561 INF: FPGA: 'ZDACW 38545' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:33:56.384 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:33:56.394 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:56.394 -07 000000455 INF: FPGA: Recv ZDACR 38545
17-03-18 02:33:56.404 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:33:56.404 -07 000000561 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-18 02:33:56.404 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:33:56.404 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:33:56.404 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:56.414 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:33:56.414 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:33:56.414 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:56.414 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:33:56.414 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:33:56.414 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:33:56.424 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:33:56.494 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:33:56.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:33:56.584 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:33:56.584 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:33:56.744 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:33:56.744 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:33:56.794 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:56.794 -07 000000606 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:33:56.804 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:33:56.804 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:56.804 -07 000000501 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 02:33:56.804 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-18 02:33:57.154 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.026244,
17-03-18 02:33:57.754 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:33:57.754 -07 000000561 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:33:57.764 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.764 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:33:57.784 -07 000000501 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:33:57.784 -07 000000501 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:33:57.784 -07 000000501 INF: Y Motor: Moved to 64.0571 after 1444 ms (table move)
17-03-18 02:33:57.784 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176448 mm (DAC = 38545)
17-03-18 02:33:57.784 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.794 -07 000000462 INF: FPGA: Recv ZSGSRD 36763
17-03-18 02:33:57.794 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:33:57.794 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.794 -07 000000430 INF: FPGA: Recv ZSGSRD 36754
17-03-18 02:33:57.804 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:33:57.804 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.804 -07 000000424 INF: FPGA: Recv ZSGSRD 36757
17-03-18 02:33:57.814 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.814 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.814 -07 000000455 INF: FPGA: Recv ZSGSRD 36758
17-03-18 02:33:57.824 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.824 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.824 -07 000000591 INF: FPGA: Recv ZSGSRD 36757
17-03-18 02:33:57.834 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.834 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.834 -07 000000501 INF: FPGA: Recv ZSGSRD 36754
17-03-18 02:33:57.844 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.844 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.844 -07 000000430 INF: FPGA: Recv ZSGSRD 36751
17-03-18 02:33:57.854 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.854 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.854 -07 000000424 INF: FPGA: Recv ZSGSRD 36757
17-03-18 02:33:57.864 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.864 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.864 -07 000000455 INF: FPGA: Recv ZSGSRD 36755
17-03-18 02:33:57.874 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.874 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:57.874 -07 000000576 INF: FPGA: Recv ZSGSRD 36749
17-03-18 02:33:57.884 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.884 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:57.884 -07 000000501 INF: FPGA: Recv ZPIEZORD 32929
17-03-18 02:33:57.894 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:57.894 -07 000000444 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -8.5 V.
17-03-18 02:33:57.894 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36756 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36756 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36749 (-175.5 uncal um), Max = 36763 (-175.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:33:57.894 -07 000000444 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36756, posNoise = 7, negNoise = 7
17-03-18 02:33:57.894 -07 000000444 INF: Z Motor: After move to -0.176448, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:57.894 -07 000000444 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-18 02:33:57.894 -07 000000444 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:33:57.944 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 02:33:57.944 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:33:57.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:57.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:57.944 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:57.944 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:57.944 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:33:57.944 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:57.944 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:33:57.944 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:33:57.954 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:33:57.954 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:33:57.954 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:33:57.954 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:33:57.964 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:33:58.004 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:33:58.304 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:33:58.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:33:58.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:33:58.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:33:58.344 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:33:58.344 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:33:58.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:33:58.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:33:58.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:58.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:33:58.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:33:58.444 -07 000000512 INF: Autofocus start
17-03-18 02:33:58.444 -07 000000512 INF: MeasureProfile start
17-03-18 02:33:58.444 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:33:58.444 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:33:58.454 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:33:58.454 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:33:58.454 -07 000000512 INF: MeasureProfile done
17-03-18 02:33:58.454 -07 000000512 INF: X=64  Z correction [um]=0.2557664
17-03-18 02:33:58.454 -07 000000512 INF: Autofocus finished
17-03-18 02:33:58.654 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:33:58.654 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:33:58.654 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176451693493701. ----------
17-03-18 02:33:58.654 -07 000000610 INF: Cycle	101	Tile	6	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:33:58.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37113, sync = True, waitForSettling = True)
17-03-18 02:33:58.664 -07 000000610 INF: Z Motor: Moving to -0.169892 mm, started at -0.176452 mm, distance = 6.56 um
17-03-18 02:33:58.664 -07 000000610 INF: FPGA: Xmit ZDACW 37113\n [Z Motor]
17-03-18 02:33:58.664 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:33:58.674 -07 000000610 INF: FPGA: 'ZDACW 37113' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:33:58.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:33:58.674 -07 000000424 INF: FPGA: Recv ZDACR 37113
17-03-18 02:33:58.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:33:58.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.834 -07 000000576 INF: FPGA: Recv ZSGSRD 35737
17-03-18 02:33:58.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.844 -07 000000462 INF: FPGA: Recv ZSGSRD 35745
17-03-18 02:33:58.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.854 -07 000000626 INF: FPGA: Recv ZSGSRD 35739
17-03-18 02:33:58.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.864 -07 000000444 INF: FPGA: Recv ZSGSRD 35729
17-03-18 02:33:58.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.874 -07 000000424 INF: FPGA: Recv ZSGSRD 35735
17-03-18 02:33:58.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35738
17-03-18 02:33:58.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.894 -07 000000462 INF: FPGA: Recv ZSGSRD 35735
17-03-18 02:33:58.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.904 -07 000000618 INF: FPGA: Recv ZSGSRD 35735
17-03-18 02:33:58.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.914 -07 000000629 INF: FPGA: Recv ZSGSRD 35739
17-03-18 02:33:58.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:33:58.924 -07 000000591 INF: FPGA: Recv ZSGSRD 35739
17-03-18 02:33:58.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:33:58.934 -07 000000576 INF: FPGA: Recv ZPIEZORD 31560
17-03-18 02:33:58.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:33:58.944 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.2 V.
17-03-18 02:33:58.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35737 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35738 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35729 (-169.0 uncal um), Max = 35745 (-169.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:33:58.944 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35737, posNoise = 8, negNoise = 8
17-03-18 02:33:58.944 -07 000000610 INF: Z Motor: After move to -0.169892, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:33:58.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:33:58.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:33:58.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:33:58.944 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:33:58.944 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:33:58.944 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:33:58.944 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:33:58.944 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:33:58.944 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:33:58.944 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:33:58.944 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:33:58.944 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:33:58.944 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:33:58.954 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:33:58.954 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:33:58.954 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:33:58.954 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:33:58.964 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:33:58.964 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:33:58.964 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:33:58.964 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:33:58.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37290 150\n [Camera]
17-03-18 02:33:59.164 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:33:59.564 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:33:59.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:33:59.564 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:33:59.564 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:33:59.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:33:59.564 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:33:59.564 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:33:59.564 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:33:59.564 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:33:59.564 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:33:59.754 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37290 781
17-03-18 02:33:59.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:33:59.964 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:33:59.964 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:33:59.964 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:59.964 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:59.964 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:33:59.964 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:33:59.964 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:33:59.964 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:33:59.974 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:33:59.974 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:34:00.094 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:00.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:00.094 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:00.094 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:00.094 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:34:00.094 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:00.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:00.094 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:00.094 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:00.094 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:34:00.284 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:00.284 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:00.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37290 150' command took 2 ms to send, 1316 ms to get response, and 1320 ms overall
17-03-18 02:34:00.284 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:00.284 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169905421321246. ------
17-03-18 02:34:00.294 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:00.294 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17625 mm
17-03-18 02:34:00.294 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:00.294 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:00.294 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:34:00.294 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:34:00.294 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38501, sync = True, waitForSettling = False)
17-03-18 02:34:00.294 -07 000000501 INF: Z Motor: Moving to -0.176246 mm, started at -0.169905 mm, distance = -6.34 um
17-03-18 02:34:00.304 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:00.304 -07 000000501 INF: FPGA: Xmit ZDACW 38501\n [Z Motor]
17-03-18 02:34:00.304 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:34:00.314 -07 000000501 INF: FPGA: 'ZDACW 38501' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:34:00.314 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:00.314 -07 000000579 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:34:00.324 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:00.324 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:34:00.324 -07 000000576 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:00.324 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:00.324 -07 000000576 INF: Y Motor: Moving 1337 steps-11
17-03-18 02:34:00.334 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:00.334 -07 000000618 INF: FPGA: Recv ZDACR 38501
17-03-18 02:34:00.344 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:00.344 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:00.344 -07 000000501 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:34:00.494 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:34:00.494 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:34:00.494 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:00.494 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:34:00.494 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:34:00.504 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:00.504 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:00.504 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:34:00.504 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:34:00.514 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:34:00.524 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:00.524 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:34:00.714 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:34:00.714 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:34:00.764 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:00.764 -07 000000626 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:34:00.774 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:00.774 -07 000000576 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:00.774 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:34:00.774 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 02:34:01.494 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:01.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:01.724 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:01.724 -07 000000461 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:34:01.734 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:01.734 -07 000000576 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:01.754 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:01.754 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:34:01.754 -07 000000576 INF: Y Motor: Moved to 64.8789 after 1464 ms (table move)
17-03-18 02:34:01.764 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176246 mm (DAC = 38501)
17-03-18 02:34:01.764 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.764 -07 000000444 INF: FPGA: Recv ZSGSRD 36736
17-03-18 02:34:01.774 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:01.774 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.774 -07 000000561 INF: FPGA: Recv ZSGSRD 36726
17-03-18 02:34:01.784 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.784 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.784 -07 000000590 INF: FPGA: Recv ZSGSRD 36729
17-03-18 02:34:01.794 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.794 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.794 -07 000000606 INF: FPGA: Recv ZSGSRD 36724
17-03-18 02:34:01.804 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.804 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.804 -07 000000462 INF: FPGA: Recv ZSGSRD 36731
17-03-18 02:34:01.814 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.814 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.814 -07 000000502 INF: FPGA: Recv ZSGSRD 36723
17-03-18 02:34:01.824 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.824 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.824 -07 000000455 INF: FPGA: Recv ZSGSRD 36726
17-03-18 02:34:01.834 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.834 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.834 -07 000000512 INF: FPGA: Recv ZSGSRD 36725
17-03-18 02:34:01.844 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.844 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.844 -07 000000444 INF: FPGA: Recv ZSGSRD 36722
17-03-18 02:34:01.854 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.854 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:01.854 -07 000000467 INF: FPGA: Recv ZSGSRD 36725
17-03-18 02:34:01.864 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.864 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:01.864 -07 000000626 INF: FPGA: Recv ZPIEZORD 32871
17-03-18 02:34:01.874 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:01.874 -07 000000591 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.875 V. Piezo Error = -8.5 V.
17-03-18 02:34:01.874 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36727 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36726 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36722 (-175.3 uncal um), Max = 36736 (-175.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:34:01.874 -07 000000591 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36727, posNoise = 9, negNoise = 5
17-03-18 02:34:01.874 -07 000000591 INF: Z Motor: After move to -0.176246, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:01.874 -07 000000591 INF: Z Motor: Settle wait time = 1466 ms, measure time = 109 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:34:01.874 -07 000000591 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:01.924 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:34:01.924 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:01.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:01.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:01.924 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:01.924 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:01.924 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:01.924 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:01.924 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:01.924 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:01.934 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:01.934 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:01.934 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:34:01.934 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:34:01.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:01.984 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:02.284 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:02.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:02.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:02.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:34:02.324 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:02.324 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:02.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:34:02.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:34:02.404 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:02.404 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:34:02.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:34:02.424 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:02.424 -07 000000561 INF: Autofocus start
17-03-18 02:34:02.424 -07 000000561 INF: MeasureProfile start
17-03-18 02:34:02.424 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:02.434 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:02.434 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:02.444 -07 000000561 INF: MeasureProfile done
17-03-18 02:34:02.444 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:34:02.444 -07 000000561 INF: Autofocus finished
17-03-18 02:34:02.514 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.012614,
17-03-18 02:34:02.634 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:02.634 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 197 ms to get response, and 206 ms overall
17-03-18 02:34:02.644 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.17626539134159. ----------
17-03-18 02:34:02.644 -07 000000610 INF: Cycle	101	Tile	7	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:02.644 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37034, sync = True, waitForSettling = True)
17-03-18 02:34:02.644 -07 000000610 INF: Z Motor: Moving to -0.169531 mm, started at -0.176265 mm, distance = 6.73 um
17-03-18 02:34:02.644 -07 000000610 INF: FPGA: Xmit ZDACW 37034\n [Z Motor]
17-03-18 02:34:02.654 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:34:02.654 -07 000000610 INF: FPGA: 'ZDACW 37034' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:34:02.654 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:02.654 -07 000000591 INF: FPGA: Recv ZDACR 37034
17-03-18 02:34:02.664 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.664 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:02.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.814 -07 000000424 INF: FPGA: Recv ZSGSRD 35689
17-03-18 02:34:02.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:02.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.824 -07 000000590 INF: FPGA: Recv ZSGSRD 35675
17-03-18 02:34:02.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.834 -07 000000591 INF: FPGA: Recv ZSGSRD 35677
17-03-18 02:34:02.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.844 -07 000000626 INF: FPGA: Recv ZSGSRD 35681
17-03-18 02:34:02.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.854 -07 000000501 INF: FPGA: Recv ZSGSRD 35672
17-03-18 02:34:02.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.864 -07 000000626 INF: FPGA: Recv ZSGSRD 35681
17-03-18 02:34:02.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.874 -07 000000501 INF: FPGA: Recv ZSGSRD 35678
17-03-18 02:34:02.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.884 -07 000000455 INF: FPGA: Recv ZSGSRD 35678
17-03-18 02:34:02.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.894 -07 000000629 INF: FPGA: Recv ZSGSRD 35682
17-03-18 02:34:02.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:02.904 -07 000000424 INF: FPGA: Recv ZSGSRD 35682
17-03-18 02:34:02.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:02.914 -07 000000444 INF: FPGA: Recv ZPIEZORD 31472
17-03-18 02:34:02.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:02.924 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -9.3 V.
17-03-18 02:34:02.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35680 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35672 (-168.6 uncal um), Max = 35689 (-168.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:34:02.924 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35680, posNoise = 9, negNoise = 8
17-03-18 02:34:02.924 -07 000000610 INF: Z Motor: After move to -0.169531, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:02.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 02:34:02.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:02.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:02.924 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:02.924 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:02.924 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:02.924 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:02.924 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:02.924 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:02.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:02.924 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:02.924 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:02.924 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:02.934 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:02.934 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:02.934 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:34:02.934 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:02.944 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:34:02.944 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:34:02.944 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:34:02.944 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:02.944 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37210 150\n [Camera]
17-03-18 02:34:03.144 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:03.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:03.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:03.544 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:03.544 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:03.544 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:34:03.544 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:03.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:03.544 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:03.544 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:03.544 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:34:03.734 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37210 781
17-03-18 02:34:03.884 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:34:03.934 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:34:03.934 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:34:03.934 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:03.934 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:34:03.934 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:03.934 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:34:03.934 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:34:03.934 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:03.934 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:03.944 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:34:04.074 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:04.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:04.074 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:04.074 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:04.074 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:34:04.074 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:04.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:04.074 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:04.074 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:04.074 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:34:04.264 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:34:04.264 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:04.264 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37210 150' command took 2 ms to send, 1315 ms to get response, and 1321 ms overall
17-03-18 02:34:04.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:04.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169539241229166. ------
17-03-18 02:34:04.264 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:04.274 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17609 mm
17-03-18 02:34:04.274 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:04.274 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:04.274 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:34:04.274 -07 000000618 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:34:04.274 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38467, sync = True, waitForSettling = False)
17-03-18 02:34:04.274 -07 000000512 INF: Z Motor: Moving to -0.176091 mm, started at -0.169539 mm, distance = -6.55 um
17-03-18 02:34:04.404 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:04.404 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 131 ms overall
17-03-18 02:34:04.404 -07 000000501 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:34:04.414 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 136 ms overall
17-03-18 02:34:04.414 -07 000000618 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:04.414 -07 000000512 INF: FPGA: Xmit ZDACW 38467\n [Z Motor]
17-03-18 02:34:04.414 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:34:04.414 -07 000000618 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:04.414 -07 000000618 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:34:04.424 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:04.424 -07 000000512 INF: FPGA: 'ZDACW 38467' command took 0 ms to send, 0 ms to get response, and 145 ms overall
17-03-18 02:34:04.434 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:04.444 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:04.444 -07 000000467 INF: FPGA: Recv ZDACR 38467
17-03-18 02:34:04.454 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:04.454 -07 000000512 INF: Z Motor: MoveAbsStepped took 175 ms (did NOT wait for settling yet))
17-03-18 02:34:04.484 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:34:04.484 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:34:04.484 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:04.484 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 02:34:04.484 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:34:04.484 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:04.484 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:04.484 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:34:04.484 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:34:04.494 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:34:04.624 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:04.624 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:34:04.804 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:34:04.804 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:34:04.854 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:04.854 -07 000000467 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:34:04.864 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:04.864 -07 000000618 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:04.864 -07 000000618 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:34:04.864 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-18 02:34:05.814 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:05.814 -07 000000455 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:34:05.824 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.824 -07 000000618 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:05.854 -07 000000618 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:05.854 -07 000000618 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:34:05.854 -07 000000618 INF: Y Motor: Moved to 65.7144 after 1577 ms (table move)
17-03-18 02:34:05.854 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176091 mm (DAC = 38467)
17-03-18 02:34:05.854 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.854 -07 000000501 INF: FPGA: Recv ZSGSRD 36703
17-03-18 02:34:05.864 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:34:05.864 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.864 -07 000000467 INF: FPGA: Recv ZSGSRD 36699
17-03-18 02:34:05.874 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.874 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.874 -07 000000512 INF: FPGA: Recv ZSGSRD 36702
17-03-18 02:34:05.884 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.884 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.884 -07 000000430 INF: FPGA: Recv ZSGSRD 36703
17-03-18 02:34:05.894 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.894 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.894 -07 000000579 INF: FPGA: Recv ZSGSRD 36705
17-03-18 02:34:05.904 -07 000000461 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.904 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.904 -07 000000629 INF: FPGA: Recv ZSGSRD 36706
17-03-18 02:34:05.914 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.914 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.914 -07 000000501 INF: FPGA: Recv ZSGSRD 36705
17-03-18 02:34:05.924 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.924 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.924 -07 000000424 INF: FPGA: Recv ZSGSRD 36697
17-03-18 02:34:05.934 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.934 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.934 -07 000000502 INF: FPGA: Recv ZSGSRD 36701
17-03-18 02:34:05.944 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.944 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:05.944 -07 000000444 INF: FPGA: Recv ZSGSRD 36697
17-03-18 02:34:05.954 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.954 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:05.954 -07 000000561 INF: FPGA: Recv ZPIEZORD 32868
17-03-18 02:34:05.964 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:05.964 -07 000000461 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.5 V.
17-03-18 02:34:05.964 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36702 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36702 (-175.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36697 (-175.2 uncal um), Max = 36706 (-175.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:34:05.964 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36702, posNoise = 4, negNoise = 5
17-03-18 02:34:05.964 -07 000000461 INF: Z Motor: After move to -0.176091, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:05.964 -07 000000461 INF: Z Motor: Settle wait time = 1579 ms, measure time = 107 ms (allowed 150 ms), total time = 1686 ms
17-03-18 02:34:05.964 -07 000000461 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:06.014 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1739 ms
17-03-18 02:34:06.014 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:06.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:06.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:06.014 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:06.014 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:06.014 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:06.014 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:06.014 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:06.014 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:06.014 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:06.014 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:06.024 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:34:06.024 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:34:06.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:06.074 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:06.374 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:06.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:06.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:06.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:34:06.414 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:06.414 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:06.414 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 02:34:06.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:34:06.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:06.494 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:34:06.494 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:34:06.494 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:06.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:06.514 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:06.514 -07 000000561 INF: Autofocus start
17-03-18 02:34:06.514 -07 000000561 INF: MeasureProfile start
17-03-18 02:34:06.514 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:06.524 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:34:06.524 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:06.534 -07 000000561 INF: MeasureProfile done
17-03-18 02:34:06.534 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:34:06.534 -07 000000561 INF: Autofocus finished
17-03-18 02:34:06.724 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:06.724 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:06.724 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176104786038046. ----------
17-03-18 02:34:06.724 -07 000000610 INF: Cycle	101	Tile	8	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:06.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36999, sync = True, waitForSettling = True)
17-03-18 02:34:06.734 -07 000000610 INF: Z Motor: Moving to -0.169371 mm, started at -0.176105 mm, distance = 6.73 um
17-03-18 02:34:06.734 -07 000000610 INF: FPGA: Xmit ZDACW 36999\n [Z Motor]
17-03-18 02:34:06.734 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:34:06.744 -07 000000610 INF: FPGA: 'ZDACW 36999' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:06.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:06.744 -07 000000606 INF: FPGA: Recv ZDACR 36999
17-03-18 02:34:06.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:06.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:06.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.904 -07 000000455 INF: FPGA: Recv ZSGSRD 35661
17-03-18 02:34:06.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.914 -07 000000561 INF: FPGA: Recv ZSGSRD 35654
17-03-18 02:34:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.924 -07 000000512 INF: FPGA: Recv ZSGSRD 35657
17-03-18 02:34:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.934 -07 000000576 INF: FPGA: Recv ZSGSRD 35656
17-03-18 02:34:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.944 -07 000000467 INF: FPGA: Recv ZSGSRD 35651
17-03-18 02:34:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:06.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.954 -07 000000444 INF: FPGA: Recv ZSGSRD 35657
17-03-18 02:34:06.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:06.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.964 -07 000000561 INF: FPGA: Recv ZSGSRD 35653
17-03-18 02:34:06.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:06.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.974 -07 000000424 INF: FPGA: Recv ZSGSRD 35656
17-03-18 02:34:06.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:06.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.984 -07 000000629 INF: FPGA: Recv ZSGSRD 35651
17-03-18 02:34:06.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:06.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:06.994 -07 000000501 INF: FPGA: Recv ZSGSRD 35650
17-03-18 02:34:07.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:07.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:07.004 -07 000000430 INF: FPGA: Recv ZPIEZORD 31467
17-03-18 02:34:07.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:07.014 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.2 V.
17-03-18 02:34:07.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35655 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35655 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35650 (-168.5 uncal um), Max = 35661 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:34:07.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35655, posNoise = 6, negNoise = 5
17-03-18 02:34:07.014 -07 000000610 INF: Z Motor: After move to -0.169371, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:07.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:34:07.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:07.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:07.014 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:07.014 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:07.014 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:07.014 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:07.014 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:07.014 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:07.014 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:07.014 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:07.014 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:07.014 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:07.024 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:34:07.024 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:07.024 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:34:07.024 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:07.034 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:34:07.034 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:07.034 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:34:07.034 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:07.034 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37176 150\n [Camera]
17-03-18 02:34:07.234 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:07.634 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:07.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:07.634 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:07.634 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:07.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:07.634 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:07.634 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:34:07.634 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:07.644 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:07.644 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:34:07.824 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37176 781
17-03-18 02:34:07.874 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.015368,
17-03-18 02:34:07.974 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:08.034 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:34:08.034 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:34:08.034 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:08.034 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:08.034 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:34:08.034 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:34:08.044 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:34:08.044 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:08.044 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:08.054 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:34:08.164 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:08.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:08.164 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:08.164 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:08.164 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:08.164 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:34:08.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:08.164 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:08.164 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:08.164 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:34:08.354 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:34:08.354 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:08.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37176 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-18 02:34:08.354 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:08.354 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.169378635925622. ------
17-03-18 02:34:08.474 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:08.474 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17584 mm
17-03-18 02:34:08.474 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:08.484 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:34:08.484 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:34:08.484 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:08.484 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38411, sync = True, waitForSettling = False)
17-03-18 02:34:08.484 -07 000000444 INF: Z Motor: Moving to -0.175834 mm, started at -0.169379 mm, distance = -6.46 um
17-03-18 02:34:08.484 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:08.484 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 02:34:08.484 -07 000000626 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:34:08.494 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:08.494 -07 000000424 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:08.494 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:08.494 -07 000000424 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:34:08.494 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:08.504 -07 000000444 INF: FPGA: Xmit ZDACW 38411\n [Z Motor]
17-03-18 02:34:08.504 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:34:08.514 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:08.514 -07 000000444 INF: FPGA: 'ZDACW 38411' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:34:08.524 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:08.524 -07 000000430 INF: FPGA: Recv ZDACR 38411
17-03-18 02:34:08.534 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:34:08.534 -07 000000444 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:34:08.564 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:34:08.564 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:34:08.564 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:08.564 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:08.574 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:34:08.574 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:34:08.574 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:08.574 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:08.574 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:34:08.574 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:34:08.694 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:08.694 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 212 ms overall
17-03-18 02:34:08.884 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:34:08.884 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:34:08.934 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:08.934 -07 000000629 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:34:08.944 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:08.944 -07 000000424 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:08.944 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:34:08.944 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 02:34:09.894 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:09.894 -07 000000430 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:34:09.904 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:09.904 -07 000000424 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:09.924 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:09.934 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:34:09.934 -07 000000424 INF: Y Motor: Moved to 66.5391 after 1449 ms (table move)
17-03-18 02:34:09.934 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175834 mm (DAC = 38411)
17-03-18 02:34:09.934 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:09.944 -07 000000512 INF: FPGA: Recv ZSGSRD 36656
17-03-18 02:34:09.944 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:09.944 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:09.944 -07 000000561 INF: FPGA: Recv ZSGSRD 36662
17-03-18 02:34:09.954 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:09.954 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:09.954 -07 000000579 INF: FPGA: Recv ZSGSRD 36660
17-03-18 02:34:09.964 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:09.964 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:09.964 -07 000000502 INF: FPGA: Recv ZSGSRD 36665
17-03-18 02:34:09.974 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:09.974 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:09.974 -07 000000424 INF: FPGA: Recv ZSGSRD 36660
17-03-18 02:34:09.984 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:09.984 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:09.984 -07 000000444 INF: FPGA: Recv ZSGSRD 36663
17-03-18 02:34:09.994 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:09.994 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:09.994 -07 000000462 INF: FPGA: Recv ZSGSRD 36664
17-03-18 02:34:10.004 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:10.004 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:10.004 -07 000000591 INF: FPGA: Recv ZSGSRD 36657
17-03-18 02:34:10.014 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:10.014 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:10.014 -07 000000502 INF: FPGA: Recv ZSGSRD 36662
17-03-18 02:34:10.024 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:10.024 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:10.024 -07 000000424 INF: FPGA: Recv ZSGSRD 36661
17-03-18 02:34:10.034 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:10.034 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:10.034 -07 000000626 INF: FPGA: Recv ZPIEZORD 32832
17-03-18 02:34:10.044 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:10.044 -07 000000461 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.5 V.
17-03-18 02:34:10.044 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36661 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36662 (-175.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36656 (-174.9 uncal um), Max = 36665 (-175.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:34:10.044 -07 000000461 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36661, posNoise = 4, negNoise = 5
17-03-18 02:34:10.044 -07 000000461 INF: Z Motor: After move to -0.175834, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:10.044 -07 000000461 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:34:10.044 -07 000000461 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:10.094 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:34:10.094 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:10.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:10.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:10.094 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:10.094 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:10.094 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:10.094 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:10.094 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:10.094 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:10.104 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:10.104 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:10.114 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 02:34:10.114 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:34:10.114 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:10.164 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:10.464 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:10.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:10.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:10.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:34:10.504 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:10.504 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:10.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 02:34:10.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:34:10.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:10.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:34:10.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:34:10.604 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:10.604 -07 000000424 INF: Autofocus start
17-03-18 02:34:10.604 -07 000000424 INF: MeasureProfile start
17-03-18 02:34:10.614 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:10.614 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:34:10.614 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:10.644 -07 000000424 INF: MeasureProfile done
17-03-18 02:34:10.644 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:34:10.644 -07 000000424 INF: Autofocus finished
17-03-18 02:34:10.814 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:10.814 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:34:10.814 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.175841393340233. ----------
17-03-18 02:34:10.824 -07 000000610 INF: Cycle	101	Tile	9	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:10.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36944, sync = True, waitForSettling = True)
17-03-18 02:34:10.824 -07 000000610 INF: Z Motor: Moving to -0.169119 mm, started at -0.175841 mm, distance = 6.72 um
17-03-18 02:34:10.824 -07 000000610 INF: FPGA: Xmit ZDACW 36944\n [Z Motor]
17-03-18 02:34:10.824 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:34:10.834 -07 000000610 INF: FPGA: 'ZDACW 36944' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:10.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:10.834 -07 000000590 INF: FPGA: Recv ZDACR 36944
17-03-18 02:34:10.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:10.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:10.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:10.994 -07 000000430 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:34:11.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:11.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:11.004 -07 000000618 INF: FPGA: Recv ZSGSRD 35619
17-03-18 02:34:11.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:11.014 -07 000000561 INF: FPGA: Recv ZSGSRD 35617
17-03-18 02:34:11.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:11.024 -07 000000579 INF: FPGA: Recv ZSGSRD 35615
17-03-18 02:34:11.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:11.034 -07 000000461 INF: FPGA: Recv ZSGSRD 35614
17-03-18 02:34:11.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:11.044 -07 000000629 INF: FPGA: Recv ZSGSRD 35615
17-03-18 02:34:11.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:11.054 -07 000000512 INF: FPGA: Recv ZSGSRD 35617
17-03-18 02:34:11.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:11.064 -07 000000467 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:34:11.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:11.074 -07 000000424 INF: FPGA: Recv ZSGSRD 35618
17-03-18 02:34:11.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:11.084 -07 000000590 INF: FPGA: Recv ZSGSRD 35616
17-03-18 02:34:11.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:11.094 -07 000000629 INF: FPGA: Recv ZPIEZORD 31401
17-03-18 02:34:11.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:11.104 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.3 V.
17-03-18 02:34:11.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35617 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35617 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35614 (-168.2 uncal um), Max = 35620 (-168.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:34:11.104 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35617, posNoise = 3, negNoise = 3
17-03-18 02:34:11.104 -07 000000610 INF: Z Motor: After move to -0.169119, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:11.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:34:11.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:11.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:11.104 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:11.104 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:11.104 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:11.104 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:11.104 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:11.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:11.104 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:11.104 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:11.104 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:34:11.104 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:11.114 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:34:11.114 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:11.114 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:11.114 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:11.124 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:34:11.124 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:34:11.124 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:34:11.124 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:34:11.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37121 150\n [Camera]
17-03-18 02:34:11.324 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:11.494 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:11.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:11.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:11.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:11.724 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:11.724 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:11.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:11.724 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:11.724 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:11.724 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:34:11.724 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:11.724 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:34:11.914 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37121 781
17-03-18 02:34:12.064 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:12.114 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:34:12.114 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:34:12.114 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:12.114 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:34:12.114 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:34:12.114 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:12.114 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:12.114 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:34:12.114 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:12.124 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:34:12.254 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:12.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:12.254 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:12.254 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:12.254 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:34:12.254 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:12.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:12.254 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:12.254 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:12.254 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:34:12.444 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:12.444 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:12.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37121 150' command took 2 ms to send, 1316 ms to get response, and 1321 ms overall
17-03-18 02:34:12.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:12.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169134515864235. ------
17-03-18 02:34:12.454 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:12.454 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17594 mm
17-03-18 02:34:12.454 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:12.454 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:12.454 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:34:12.454 -07 000000579 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:34:12.454 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38434, sync = True, waitForSettling = False)
17-03-18 02:34:12.454 -07 000000462 INF: Z Motor: Moving to -0.175940 mm, started at -0.169135 mm, distance = -6.81 um
17-03-18 02:34:12.464 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:12.464 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:12.464 -07 000000591 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:34:12.474 -07 000000462 INF: FPGA: Xmit ZDACW 38434\n [Z Motor]
17-03-18 02:34:12.474 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:34:12.474 -07 000000579 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:12.474 -07 000000579 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:12.474 -07 000000579 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:34:12.474 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:34:12.484 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:12.484 -07 000000462 INF: FPGA: 'ZDACW 38434' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:34:12.494 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:12.504 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:12.504 -07 000000561 INF: FPGA: Recv ZDACR 38434
17-03-18 02:34:12.514 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:12.514 -07 000000462 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:34:12.654 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:34:12.654 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:34:12.654 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:12.654 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:34:12.654 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:34:12.654 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:12.664 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:12.664 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:34:12.664 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:34:12.664 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:34:12.684 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:12.684 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 224 ms overall
17-03-18 02:34:12.864 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:34:12.864 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:34:12.924 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:12.924 -07 000000626 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:34:12.934 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:34:12.934 -07 000000579 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:12.934 -07 000000579 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 02:34:12.934 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 02:34:13.234 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.003063,
17-03-18 02:34:13.884 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:13.884 -07 000000461 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:34:13.894 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:13.894 -07 000000579 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:13.914 -07 000000579 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:13.914 -07 000000579 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:34:13.914 -07 000000579 INF: Y Motor: Moved to 67.3721 after 1462 ms (table move)
17-03-18 02:34:13.924 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175940 mm (DAC = 38434)
17-03-18 02:34:13.924 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:13.924 -07 000000569 INF: FPGA: Recv ZSGSRD 36682
17-03-18 02:34:13.934 -07 000000444 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:13.934 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:13.934 -07 000000462 INF: FPGA: Recv ZSGSRD 36682
17-03-18 02:34:13.944 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:13.944 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:13.944 -07 000000569 INF: FPGA: Recv ZSGSRD 36679
17-03-18 02:34:13.954 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:13.954 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:13.954 -07 000000576 INF: FPGA: Recv ZSGSRD 36681
17-03-18 02:34:13.964 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:13.964 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:13.964 -07 000000502 INF: FPGA: Recv ZSGSRD 36677
17-03-18 02:34:13.974 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:13.974 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:13.974 -07 000000430 INF: FPGA: Recv ZSGSRD 36676
17-03-18 02:34:13.984 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:13.984 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:13.984 -07 000000462 INF: FPGA: Recv ZSGSRD 36675
17-03-18 02:34:13.994 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:13.994 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:13.994 -07 000000424 INF: FPGA: Recv ZSGSRD 36681
17-03-18 02:34:14.004 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:14.004 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:14.004 -07 000000501 INF: FPGA: Recv ZSGSRD 36675
17-03-18 02:34:14.014 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:14.014 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:14.014 -07 000000424 INF: FPGA: Recv ZSGSRD 36678
17-03-18 02:34:14.024 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:14.024 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:14.024 -07 000000512 INF: FPGA: Recv ZPIEZORD 32862
17-03-18 02:34:14.034 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:14.034 -07 000000444 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.865 V. Piezo Error = -8.4 V.
17-03-18 02:34:14.034 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36679 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36678 (-175.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36675 (-175.0 uncal um), Max = 36682 (-175.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:34:14.034 -07 000000444 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36679, posNoise = 3, negNoise = 4
17-03-18 02:34:14.034 -07 000000444 INF: Z Motor: After move to -0.175940, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:14.034 -07 000000444 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:34:14.034 -07 000000444 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:14.084 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 02:34:14.084 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:14.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:14.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:14.084 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:14.084 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:14.084 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:14.094 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:14.094 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:34:14.094 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:14.094 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:14.094 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:14.104 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 02:34:14.104 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:34:14.104 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:14.144 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:14.444 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:14.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:14.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:14.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:34:14.484 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:14.484 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:14.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:34:14.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:34:14.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:14.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:34:14.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:34:14.584 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:14.584 -07 000000561 INF: Autofocus start
17-03-18 02:34:14.584 -07 000000561 INF: MeasureProfile start
17-03-18 02:34:14.584 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:14.594 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:34:14.594 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:14.604 -07 000000561 INF: MeasureProfile done
17-03-18 02:34:14.604 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:34:14.604 -07 000000561 INF: Autofocus finished
17-03-18 02:34:14.794 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:14.794 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:14.794 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.175957029158785. ----------
17-03-18 02:34:14.794 -07 000000610 INF: Cycle	101	Tile	10	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:14.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36949, sync = True, waitForSettling = True)
17-03-18 02:34:14.804 -07 000000610 INF: Z Motor: Moving to -0.169142 mm, started at -0.175957 mm, distance = 6.82 um
17-03-18 02:34:14.804 -07 000000610 INF: FPGA: Xmit ZDACW 36949\n [Z Motor]
17-03-18 02:34:14.804 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:34:14.814 -07 000000610 INF: FPGA: 'ZDACW 36949' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:14.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:14.814 -07 000000512 INF: FPGA: Recv ZDACR 36949
17-03-18 02:34:14.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:14.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:14.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:14.974 -07 000000502 INF: FPGA: Recv ZSGSRD 35621
17-03-18 02:34:14.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:14.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:14.984 -07 000000501 INF: FPGA: Recv ZSGSRD 35618
17-03-18 02:34:14.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:14.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:14.994 -07 000000569 INF: FPGA: Recv ZSGSRD 35621
17-03-18 02:34:15.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:15.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:15.004 -07 000000424 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:34:15.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:15.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:15.014 -07 000000444 INF: FPGA: Recv ZSGSRD 35619
17-03-18 02:34:15.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:15.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:15.024 -07 000000579 INF: FPGA: Recv ZSGSRD 35619
17-03-18 02:34:15.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:15.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:15.034 -07 000000501 INF: FPGA: Recv ZSGSRD 35617
17-03-18 02:34:15.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:15.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:15.044 -07 000000462 INF: FPGA: Recv ZSGSRD 35622
17-03-18 02:34:15.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:15.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:15.054 -07 000000467 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:34:15.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:15.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:15.064 -07 000000590 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:34:15.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:15.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:15.074 -07 000000502 INF: FPGA: Recv ZPIEZORD 31447
17-03-18 02:34:15.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:15.084 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.2 V.
17-03-18 02:34:15.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35620 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35620 (-168.3 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35617 (-168.3 uncal um), Max = 35622 (-168.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:34:15.084 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35620, posNoise = 2, negNoise = 3
17-03-18 02:34:15.084 -07 000000610 INF: Z Motor: After move to -0.169142, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:15.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:34:15.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:15.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:15.084 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:15.084 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:15.084 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:15.084 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:15.084 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:15.084 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:15.084 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:15.084 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:15.084 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:15.084 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:15.094 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:15.094 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:15.094 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:34:15.094 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:15.104 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:34:15.104 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:15.104 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:34:15.104 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:34:15.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 37126 150\n [Camera]
17-03-18 02:34:15.304 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:15.704 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:15.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:15.704 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:15.704 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:15.704 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:34:15.704 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:15.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:15.704 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:15.704 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:15.704 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:34:15.894 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37126 781
17-03-18 02:34:16.044 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:16.104 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:34:16.104 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:34:16.104 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:16.104 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:34:16.104 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:34:16.104 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:16.104 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:34:16.104 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:34:16.114 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:16.114 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:34:16.234 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:16.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:16.234 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:16.234 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:16.234 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:34:16.234 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:16.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:16.234 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:16.234 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:16.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:34:16.424 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:16.424 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:16.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 37126 150' command took 2 ms to send, 1315 ms to get response, and 1321 ms overall
17-03-18 02:34:16.424 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:16.424 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.16915378850066. ------
17-03-18 02:34:16.434 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:16.434 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17534 mm
17-03-18 02:34:16.434 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:16.554 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:16.554 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:16.554 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 02:34:16.554 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38303, sync = True, waitForSettling = False)
17-03-18 02:34:16.554 -07 000000569 INF: Z Motor: Moving to -0.175340 mm, started at -0.169154 mm, distance = -6.19 um
17-03-18 02:34:16.554 -07 000000569 INF: FPGA: Xmit ZDACW 38303\n [Z Motor]
17-03-18 02:34:16.554 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:16.554 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:34:16.554 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:34:16.554 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:34:16.564 -07 000000569 INF: FPGA: 'ZDACW 38303' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:34:16.564 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:16.574 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:16.574 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:34:16.584 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:16.584 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:34:16.584 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:16.584 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:16.584 -07 000000576 INF: Y Motor: Moving 1345 steps-23
17-03-18 02:34:16.584 -07 000000424 INF: FPGA: Recv ZDACR 38303
17-03-18 02:34:16.594 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:16.594 -07 000000569 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 02:34:16.594 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:16.634 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:34:16.634 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:34:16.634 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:16.644 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:34:16.644 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:34:16.644 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:16.644 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:16.644 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:34:16.644 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:34:16.654 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:34:16.764 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:16.764 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 206 ms overall
17-03-18 02:34:16.964 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:34:16.964 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:34:17.014 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:17.014 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:34:17.024 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:34:17.024 -07 000000576 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:17.024 -07 000000576 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:34:17.024 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.166 mm/sec
17-03-18 02:34:17.974 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:17.974 -07 000000590 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:34:17.984 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:17.984 -07 000000576 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:18.004 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:18.004 -07 000000576 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:34:18.004 -07 000000576 INF: Y Motor: Moved to 68.2051 after 1450 ms (table move)
17-03-18 02:34:18.014 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175340 mm (DAC = 38303)
17-03-18 02:34:18.014 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.014 -07 000000430 INF: FPGA: Recv ZSGSRD 36589
17-03-18 02:34:18.024 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:18.024 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.024 -07 000000512 INF: FPGA: Recv ZSGSRD 36589
17-03-18 02:34:18.034 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:18.034 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.034 -07 000000569 INF: FPGA: Recv ZSGSRD 36586
17-03-18 02:34:18.044 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:18.044 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.044 -07 000000579 INF: FPGA: Recv ZSGSRD 36588
17-03-18 02:34:18.054 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:18.054 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.054 -07 000000467 INF: FPGA: Recv ZSGSRD 36582
17-03-18 02:34:18.064 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:18.064 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.064 -07 000000606 INF: FPGA: Recv ZSGSRD 36592
17-03-18 02:34:18.074 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:18.074 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.074 -07 000000576 INF: FPGA: Recv ZSGSRD 36579
17-03-18 02:34:18.084 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:18.104 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.104 -07 000000455 INF: FPGA: Recv ZSGSRD 36588
17-03-18 02:34:18.114 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:18.124 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.124 -07 000000430 INF: FPGA: Recv ZSGSRD 36584
17-03-18 02:34:18.134 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:34:18.154 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:18.154 -07 000000618 INF: FPGA: Recv ZSGSRD 36577
17-03-18 02:34:18.164 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:18.164 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:18.164 -07 000000461 INF: FPGA: Recv ZPIEZORD 32753
17-03-18 02:34:18.174 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:18.174 -07 000000502 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.845 V. Piezo Error = -8.5 V.
17-03-18 02:34:18.174 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36585 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36587 (-174.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36577 (-174.4 uncal um), Max = 36592 (-174.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:34:18.174 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36585, posNoise = 7, negNoise = 8
17-03-18 02:34:18.174 -07 000000502 INF: Z Motor: After move to -0.175340, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:18.174 -07 000000502 INF: Z Motor: Settle wait time = 1454 ms, measure time = 160 ms (allowed 150 ms), total time = 1614 ms
17-03-18 02:34:18.174 -07 000000502 INF: Z Motor: Warning: Actual position measuring time = 160 ms, longer than max expected time of 150 ms
17-03-18 02:34:18.174 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1740 ms
17-03-18 02:34:18.174 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:18.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:18.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:18.174 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:18.174 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:18.174 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:18.174 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:18.174 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:18.174 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:18.184 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:18.184 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:18.184 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:34:18.184 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:34:18.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:18.234 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:18.534 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:18.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:18.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:18.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:34:18.574 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:18.574 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:18.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:34:18.594 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.997626,
17-03-18 02:34:18.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-18 02:34:18.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:18.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:34:18.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:34:18.674 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:18.674 -07 000000591 INF: Autofocus start
17-03-18 02:34:18.674 -07 000000591 INF: MeasureProfile start
17-03-18 02:34:18.674 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:18.684 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:18.684 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:18.694 -07 000000591 INF: MeasureProfile done
17-03-18 02:34:18.694 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:34:18.694 -07 000000591 INF: Autofocus finished
17-03-18 02:34:18.884 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:18.884 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 02:34:18.894 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.17535315321746. ----------
17-03-18 02:34:18.894 -07 000000610 INF: Cycle	101	Tile	11	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:18.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36818, sync = True, waitForSettling = True)
17-03-18 02:34:18.894 -07 000000610 INF: Z Motor: Moving to -0.168542 mm, started at -0.175353 mm, distance = 6.81 um
17-03-18 02:34:18.894 -07 000000610 INF: FPGA: Xmit ZDACW 36818\n [Z Motor]
17-03-18 02:34:18.894 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:34:18.904 -07 000000610 INF: FPGA: 'ZDACW 36818' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:18.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:18.904 -07 000000444 INF: FPGA: Recv ZDACR 36818
17-03-18 02:34:18.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:18.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:19.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.064 -07 000000467 INF: FPGA: Recv ZSGSRD 35525
17-03-18 02:34:19.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:19.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.074 -07 000000606 INF: FPGA: Recv ZSGSRD 35525
17-03-18 02:34:19.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.084 -07 000000590 INF: FPGA: Recv ZSGSRD 35529
17-03-18 02:34:19.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.094 -07 000000626 INF: FPGA: Recv ZSGSRD 35527
17-03-18 02:34:19.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.104 -07 000000569 INF: FPGA: Recv ZSGSRD 35524
17-03-18 02:34:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.114 -07 000000501 INF: FPGA: Recv ZSGSRD 35529
17-03-18 02:34:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.124 -07 000000424 INF: FPGA: Recv ZSGSRD 35529
17-03-18 02:34:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.134 -07 000000430 INF: FPGA: Recv ZSGSRD 35521
17-03-18 02:34:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.144 -07 000000618 INF: FPGA: Recv ZSGSRD 35528
17-03-18 02:34:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:19.154 -07 000000576 INF: FPGA: Recv ZSGSRD 35529
17-03-18 02:34:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:19.164 -07 000000455 INF: FPGA: Recv ZPIEZORD 31309
17-03-18 02:34:19.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:19.174 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.3 V.
17-03-18 02:34:19.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35527 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35521 (-167.6 uncal um), Max = 35529 (-167.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:34:19.174 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35527, posNoise = 2, negNoise = 6
17-03-18 02:34:19.174 -07 000000610 INF: Z Motor: After move to -0.168542, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:19.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:34:19.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:19.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:19.174 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:19.174 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:19.174 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:19.174 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:19.174 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:19.174 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:19.174 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:19.174 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:19.174 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:19.174 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:19.174 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:19.174 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:19.184 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:34:19.184 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:19.194 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:34:19.194 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:34:19.194 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:34:19.194 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:34:19.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36995 150\n [Camera]
17-03-18 02:34:19.394 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:19.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:19.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:19.794 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:19.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:19.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:19.794 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:19.794 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:19.794 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:34:19.804 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:19.804 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:34:19.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36995 781
17-03-18 02:34:20.134 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:20.184 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:34:20.184 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:34:20.184 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:20.184 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:34:20.184 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:34:20.184 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:20.184 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:34:20.184 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:20.194 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:20.194 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:34:20.324 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:20.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:20.324 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:20.324 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:20.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:20.324 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:20.324 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:20.324 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:34:20.324 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:20.324 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:34:20.514 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:20.514 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:20.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36995 150' command took 2 ms to send, 1316 ms to get response, and 1320 ms overall
17-03-18 02:34:20.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:20.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168556336771476. ------
17-03-18 02:34:20.524 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17519 mm
17-03-18 02:34:20.524 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:20.524 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:20.524 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:34:20.524 -07 000000512 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 02:34:20.524 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38270, sync = True, waitForSettling = False)
17-03-18 02:34:20.524 -07 000000462 INF: Z Motor: Moving to -0.175189 mm, started at -0.168556 mm, distance = -6.63 um
17-03-18 02:34:20.524 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:20.534 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:20.534 -07 000000462 INF: FPGA: Xmit ZDACW 38270\n [Z Motor]
17-03-18 02:34:20.534 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:34:20.544 -07 000000462 INF: FPGA: 'ZDACW 38270' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:34:20.544 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:20.544 -07 000000561 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:34:20.554 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:20.554 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:34:20.554 -07 000000512 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:20.664 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:20.674 -07 000000629 INF: FPGA: Recv ZDACR 38270
17-03-18 02:34:20.674 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 130 ms overall
17-03-18 02:34:20.674 -07 000000462 INF: Z Motor: MoveAbsStepped took 145 ms (did NOT wait for settling yet))
17-03-18 02:34:20.674 -07 000000512 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:20.674 -07 000000512 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:34:20.674 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:20.724 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:34:20.724 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:34:20.724 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:20.724 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:34:20.724 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:34:20.724 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:20.734 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:20.734 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:20.734 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:34:20.734 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:34:20.754 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:20.754 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 85 ms to get response, and 222 ms overall
17-03-18 02:34:21.044 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:34:21.044 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 02:34:21.094 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:21.094 -07 000000579 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:34:21.104 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:34:21.104 -07 000000512 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:21.104 -07 000000512 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:34:21.104 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-18 02:34:21.494 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:21.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:22.054 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:22.054 -07 000000618 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:34:22.064 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:22.064 -07 000000512 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:22.084 -07 000000512 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:22.084 -07 000000512 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:34:22.084 -07 000000512 INF: Y Motor: Moved to 69.0273 after 1563 ms (table move)
17-03-18 02:34:22.094 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175189 mm (DAC = 38270)
17-03-18 02:34:22.094 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.094 -07 000000591 INF: FPGA: Recv ZSGSRD 36565
17-03-18 02:34:22.104 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:22.104 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.104 -07 000000444 INF: FPGA: Recv ZSGSRD 36564
17-03-18 02:34:22.114 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.114 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.114 -07 000000590 INF: FPGA: Recv ZSGSRD 36563
17-03-18 02:34:22.124 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.124 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.124 -07 000000561 INF: FPGA: Recv ZSGSRD 36560
17-03-18 02:34:22.134 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.134 -07 000000430 INF: FPGA: Recv ZSGSRD 36556
17-03-18 02:34:22.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.144 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.144 -07 000000461 INF: FPGA: Recv ZSGSRD 36563
17-03-18 02:34:22.154 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.154 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.154 -07 000000576 INF: FPGA: Recv ZSGSRD 36564
17-03-18 02:34:22.164 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.164 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.164 -07 000000590 INF: FPGA: Recv ZSGSRD 36562
17-03-18 02:34:22.174 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.174 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.174 -07 000000561 INF: FPGA: Recv ZSGSRD 36565
17-03-18 02:34:22.184 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.184 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:22.184 -07 000000579 INF: FPGA: Recv ZSGSRD 36565
17-03-18 02:34:22.194 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.194 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:22.194 -07 000000461 INF: FPGA: Recv ZPIEZORD 32719
17-03-18 02:34:22.204 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.204 -07 000000424 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.5 V.
17-03-18 02:34:22.204 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36563 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36564 (-174.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36556 (-174.3 uncal um), Max = 36565 (-174.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:34:22.204 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36563, posNoise = 2, negNoise = 7
17-03-18 02:34:22.204 -07 000000424 INF: Z Motor: After move to -0.175189, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:22.204 -07 000000424 INF: Z Motor: Settle wait time = 1566 ms, measure time = 109 ms (allowed 150 ms), total time = 1675 ms
17-03-18 02:34:22.204 -07 000000424 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:22.254 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1727 ms
17-03-18 02:34:22.254 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:22.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:22.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:22.254 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:22.254 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:22.254 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:22.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:22.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:22.254 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:22.264 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:22.264 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:22.274 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:34:22.274 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:34:22.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:22.324 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:22.624 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:22.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:22.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:22.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:34:22.664 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:22.664 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:22.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:34:22.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:34:22.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:22.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:34:22.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:34:22.764 -07 000000502 INF: Autofocus start
17-03-18 02:34:22.764 -07 000000502 INF: MeasureProfile start
17-03-18 02:34:22.764 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:22.764 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:22.774 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:22.774 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:22.774 -07 000000502 INF: MeasureProfile done
17-03-18 02:34:22.774 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:34:22.774 -07 000000502 INF: Autofocus finished
17-03-18 02:34:22.974 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:22.974 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:22.974 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175211820550341. ----------
17-03-18 02:34:22.974 -07 000000610 INF: Cycle	101	Tile	12	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:22.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36767, sync = True, waitForSettling = True)
17-03-18 02:34:22.984 -07 000000610 INF: Z Motor: Moving to -0.168309 mm, started at -0.175212 mm, distance = 6.90 um
17-03-18 02:34:22.984 -07 000000610 INF: FPGA: Xmit ZDACW 36767\n [Z Motor]
17-03-18 02:34:22.984 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:34:22.994 -07 000000610 INF: FPGA: 'ZDACW 36767' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:22.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:22.994 -07 000000501 INF: FPGA: Recv ZDACR 36767
17-03-18 02:34:23.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:23.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.164 -07 000000591 INF: FPGA: Recv ZSGSRD 35494
17-03-18 02:34:23.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:34:23.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.174 -07 000000467 INF: FPGA: Recv ZSGSRD 35490
17-03-18 02:34:23.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.184 -07 000000512 INF: FPGA: Recv ZSGSRD 35492
17-03-18 02:34:23.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.194 -07 000000462 INF: FPGA: Recv ZSGSRD 35490
17-03-18 02:34:23.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.204 -07 000000430 INF: FPGA: Recv ZSGSRD 35494
17-03-18 02:34:23.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.214 -07 000000576 INF: FPGA: Recv ZSGSRD 35486
17-03-18 02:34:23.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.224 -07 000000455 INF: FPGA: Recv ZSGSRD 35493
17-03-18 02:34:23.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.234 -07 000000579 INF: FPGA: Recv ZSGSRD 35494
17-03-18 02:34:23.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35490
17-03-18 02:34:23.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:23.254 -07 000000467 INF: FPGA: Recv ZSGSRD 35492
17-03-18 02:34:23.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:23.264 -07 000000590 INF: FPGA: Recv ZPIEZORD 31307
17-03-18 02:34:23.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:23.274 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.2 V.
17-03-18 02:34:23.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35492 (-167.5 uncal um), Error = 0.8 uncal um, Median = 35492 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35486 (-167.4 uncal um), Max = 35494 (-167.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:34:23.274 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35492, posNoise = 2, negNoise = 6
17-03-18 02:34:23.274 -07 000000610 INF: Z Motor: After move to -0.168309, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:23.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:34:23.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:23.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:23.274 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:23.274 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:23.274 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:23.274 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:23.274 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:23.274 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:23.274 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:23.274 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:23.274 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:34:23.274 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:23.274 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:34:23.274 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:23.274 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:23.274 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:23.294 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:34:23.294 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:34:23.294 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:34:23.294 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:34:23.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36944 150\n [Camera]
17-03-18 02:34:23.494 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:23.894 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:23.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:23.894 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:23.894 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:23.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:23.894 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:23.894 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:23.894 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:34:23.894 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:23.894 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:34:23.954 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.978563,
17-03-18 02:34:24.094 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36944 784
17-03-18 02:34:24.234 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:24.274 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:34:24.274 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:34:24.274 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:24.274 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:34:24.274 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:34:24.274 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:24.274 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:34:24.274 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:34:24.284 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:24.284 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:34:24.424 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:24.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:24.424 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:24.424 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:24.424 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:34:24.424 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:24.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:24.434 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:24.434 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:24.434 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:34:24.614 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:34:24.614 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:24.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36944 150' command took 2 ms to send, 1308 ms to get response, and 1320 ms overall
17-03-18 02:34:24.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:24.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168331489346515. ------
17-03-18 02:34:24.624 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:24.624 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17470 mm
17-03-18 02:34:24.624 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:24.624 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:34:24.624 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38164, sync = True, waitForSettling = False)
17-03-18 02:34:24.624 -07 000000606 INF: Z Motor: Moving to -0.174704 mm, started at -0.168331 mm, distance = -6.37 um
17-03-18 02:34:24.624 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:34:24.624 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:24.634 -07 000000606 INF: FPGA: Xmit ZDACW 38164\n [Z Motor]
17-03-18 02:34:24.634 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:34:24.634 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:34:24.644 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:24.644 -07 000000606 INF: FPGA: 'ZDACW 38164' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:34:24.644 -07 000000467 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:34:24.654 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:24.654 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:34:24.654 -07 000000462 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:24.654 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:24.654 -07 000000462 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:34:24.664 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:24.664 -07 000000591 INF: FPGA: Recv ZDACR 38164
17-03-18 02:34:24.674 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:24.674 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:24.674 -07 000000606 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:34:24.824 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:34:24.824 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:34:24.824 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:24.824 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:34:24.824 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:34:24.824 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:24.834 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:24.834 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:34:24.834 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:34:24.834 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:34:24.854 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:24.854 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:34:25.054 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:34:25.054 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 02:34:25.094 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:25.094 -07 000000561 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:34:25.104 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:34:25.104 -07 000000462 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:25.104 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:34:25.104 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-18 02:34:26.054 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:26.054 -07 000000579 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:34:26.064 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:26.064 -07 000000462 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:26.084 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:26.084 -07 000000462 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:34:26.084 -07 000000462 INF: Y Motor: Moved to 69.8633 after 1460 ms (table move)
17-03-18 02:34:26.094 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174704 mm (DAC = 38164)
17-03-18 02:34:26.094 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.094 -07 000000461 INF: FPGA: Recv ZSGSRD 36488
17-03-18 02:34:26.104 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:26.104 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.104 -07 000000606 INF: FPGA: Recv ZSGSRD 36484
17-03-18 02:34:26.114 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.114 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.114 -07 000000618 INF: FPGA: Recv ZSGSRD 36479
17-03-18 02:34:26.124 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.124 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.124 -07 000000501 INF: FPGA: Recv ZSGSRD 36479
17-03-18 02:34:26.134 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.134 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.134 -07 000000629 INF: FPGA: Recv ZSGSRD 36481
17-03-18 02:34:26.144 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.144 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.144 -07 000000461 INF: FPGA: Recv ZSGSRD 36488
17-03-18 02:34:26.154 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.154 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.154 -07 000000591 INF: FPGA: Recv ZSGSRD 36496
17-03-18 02:34:26.164 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.164 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.164 -07 000000512 INF: FPGA: Recv ZSGSRD 36490
17-03-18 02:34:26.174 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.174 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.174 -07 000000590 INF: FPGA: Recv ZSGSRD 36488
17-03-18 02:34:26.184 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.184 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:26.184 -07 000000606 INF: FPGA: Recv ZSGSRD 36488
17-03-18 02:34:26.194 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.194 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:26.194 -07 000000467 INF: FPGA: Recv ZPIEZORD 32615
17-03-18 02:34:26.204 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.204 -07 000000626 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.6 V.
17-03-18 02:34:26.204 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36486 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36488 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36479 (-173.8 uncal um), Max = 36496 (-173.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:34:26.204 -07 000000626 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36486, posNoise = 10, negNoise = 7
17-03-18 02:34:26.204 -07 000000626 INF: Z Motor: After move to -0.174704, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:26.204 -07 000000626 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:34:26.204 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:26.254 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 02:34:26.254 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:26.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:26.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:26.254 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:26.254 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:26.254 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:26.254 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:26.254 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:26.254 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:26.264 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:26.264 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:26.264 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:34:26.264 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:34:26.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:26.314 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:26.494 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:26.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:26.614 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:26.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:26.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:26.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:34:26.654 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:26.654 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:26.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:34:26.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:34:26.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:26.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:34:26.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:34:26.754 -07 000000512 INF: Autofocus start
17-03-18 02:34:26.754 -07 000000512 INF: MeasureProfile start
17-03-18 02:34:26.754 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:26.754 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:26.764 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:26.764 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:26.764 -07 000000512 INF: MeasureProfile done
17-03-18 02:34:26.764 -07 000000512 INF: X=-80  Z correction [um]=-0.4885566
17-03-18 02:34:26.764 -07 000000512 INF: Autofocus finished
17-03-18 02:34:26.964 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:26.964 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:26.964 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174717156215425. ----------
17-03-18 02:34:26.974 -07 000000610 INF: Cycle	101	Tile	13	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:26.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36570, sync = True, waitForSettling = True)
17-03-18 02:34:26.974 -07 000000610 INF: Z Motor: Moving to -0.167407 mm, started at -0.174717 mm, distance = 7.31 um
17-03-18 02:34:26.974 -07 000000610 INF: FPGA: Xmit ZDACW 36570\n [Z Motor]
17-03-18 02:34:26.974 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:34:26.984 -07 000000610 INF: FPGA: 'ZDACW 36570' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:26.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:26.984 -07 000000430 INF: FPGA: Recv ZDACR 36570
17-03-18 02:34:26.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:26.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:27.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.144 -07 000000444 INF: FPGA: Recv ZSGSRD 35350
17-03-18 02:34:27.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:27.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.154 -07 000000591 INF: FPGA: Recv ZSGSRD 35357
17-03-18 02:34:27.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.164 -07 000000561 INF: FPGA: Recv ZSGSRD 35346
17-03-18 02:34:27.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.174 -07 000000424 INF: FPGA: Recv ZSGSRD 35353
17-03-18 02:34:27.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.184 -07 000000569 INF: FPGA: Recv ZSGSRD 35350
17-03-18 02:34:27.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.194 -07 000000444 INF: FPGA: Recv ZSGSRD 35347
17-03-18 02:34:27.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.204 -07 000000462 INF: FPGA: Recv ZSGSRD 35351
17-03-18 02:34:27.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.214 -07 000000579 INF: FPGA: Recv ZSGSRD 35336
17-03-18 02:34:27.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.224 -07 000000461 INF: FPGA: Recv ZSGSRD 35349
17-03-18 02:34:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:27.234 -07 000000455 INF: FPGA: Recv ZSGSRD 35344
17-03-18 02:34:27.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:27.244 -07 000000467 INF: FPGA: Recv ZPIEZORD 31132
17-03-18 02:34:27.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:27.254 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.580 V. Piezo Error = -9.3 V.
17-03-18 02:34:27.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35348 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35350 (-166.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 35336 (-166.5 uncal um), Max = 35357 (-166.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 02:34:27.254 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35348, posNoise = 9, negNoise = 12
17-03-18 02:34:27.254 -07 000000610 INF: Z Motor: After move to -0.167407, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:27.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:34:27.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:27.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:27.254 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:27.254 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:27.254 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:27.254 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:27.254 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:27.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:27.254 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:34:27.254 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:27.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:27.254 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:27.254 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:27.254 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:27.254 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:34:27.254 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:27.274 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:34:27.274 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:34:27.274 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:34:27.274 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:34:27.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36747 150\n [Camera]
17-03-18 02:34:27.474 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:27.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:27.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:27.874 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:27.874 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:27.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:34:27.874 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:27.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:27.874 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:27.874 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:27.874 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:34:28.064 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36747 781
17-03-18 02:34:28.214 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:28.264 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:34:28.264 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:34:28.264 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:28.264 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:34:28.264 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:34:28.264 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:28.274 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:28.274 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:34:28.274 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:28.274 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:34:28.404 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:28.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:28.404 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:28.404 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:28.404 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:34:28.404 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:28.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:28.414 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:28.414 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:28.414 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:34:28.594 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:28.594 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:28.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36747 150' command took 2 ms to send, 1308 ms to get response, and 1320 ms overall
17-03-18 02:34:28.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:28.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167406402798101. ------
17-03-18 02:34:28.724 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:28.724 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17372 mm
17-03-18 02:34:28.724 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:28.724 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:28.734 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:34:28.734 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:28.734 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:34:28.734 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:34:28.734 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37949, sync = True, waitForSettling = False)
17-03-18 02:34:28.734 -07 000000606 INF: Z Motor: Moving to -0.173719 mm, started at -0.167406 mm, distance = -6.31 um
17-03-18 02:34:28.744 -07 000000606 INF: FPGA: Xmit ZDACW 37949\n [Z Motor]
17-03-18 02:34:28.744 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:34:28.754 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:28.754 -07 000000606 INF: FPGA: 'ZDACW 37949' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:34:28.754 -07 000000461 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:34:28.764 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:28.764 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:28.764 -07 000000561 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:28.764 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:28.764 -07 000000561 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:34:28.764 -07 000000618 INF: FPGA: Recv ZDACR 37949
17-03-18 02:34:28.774 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:34:28.774 -07 000000606 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:34:28.774 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:28.804 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:34:28.804 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:34:28.804 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:28.804 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:34:28.804 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:34:28.804 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:28.804 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:28.814 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:34:28.814 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:34:28.814 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:34:28.934 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:28.934 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:29.144 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:34:29.144 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:34:29.194 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:29.194 -07 000000579 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:34:29.204 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:29.204 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:29.204 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:34:29.204 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.169 mm/sec
17-03-18 02:34:29.314 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.963579,
17-03-18 02:34:30.154 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:30.154 -07 000000455 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:34:30.164 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:30.164 -07 000000561 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:30.184 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:30.184 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:34:30.184 -07 000000561 INF: Y Motor: Moved to 70.6885 after 1457 ms (table move)
17-03-18 02:34:30.194 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173719 mm (DAC = 37949)
17-03-18 02:34:30.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.194 -07 000000590 INF: FPGA: Recv ZSGSRD 36332
17-03-18 02:34:30.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:30.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.204 -07 000000569 INF: FPGA: Recv ZSGSRD 36331
17-03-18 02:34:30.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.214 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.214 -07 000000579 INF: FPGA: Recv ZSGSRD 36341
17-03-18 02:34:30.224 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.224 -07 000000618 INF: FPGA: Recv ZSGSRD 36330
17-03-18 02:34:30.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.234 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.234 -07 000000455 INF: FPGA: Recv ZSGSRD 36329
17-03-18 02:34:30.244 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.244 -07 000000430 INF: FPGA: Recv ZSGSRD 36339
17-03-18 02:34:30.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.254 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.254 -07 000000424 INF: FPGA: Recv ZSGSRD 36335
17-03-18 02:34:30.264 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.264 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.264 -07 000000579 INF: FPGA: Recv ZSGSRD 36331
17-03-18 02:34:30.274 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.274 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.274 -07 000000626 INF: FPGA: Recv ZSGSRD 36331
17-03-18 02:34:30.284 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.284 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:30.284 -07 000000467 INF: FPGA: Recv ZSGSRD 36335
17-03-18 02:34:30.294 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.294 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:30.294 -07 000000576 INF: FPGA: Recv ZPIEZORD 32409
17-03-18 02:34:30.304 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:30.304 -07 000000501 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.7 V.
17-03-18 02:34:30.304 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36333 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36332 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36329 (-172.8 uncal um), Max = 36341 (-172.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:34:30.304 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36333, posNoise = 8, negNoise = 4
17-03-18 02:34:30.304 -07 000000501 INF: Z Motor: After move to -0.173719, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:30.304 -07 000000501 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:34:30.304 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:30.354 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:34:30.354 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:30.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:30.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:30.354 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:30.354 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:30.354 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:30.354 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:30.354 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:30.354 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:30.364 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:30.364 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:30.374 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:34:30.374 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:34:30.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:30.414 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:30.714 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:30.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:30.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:30.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:34:30.754 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:30.754 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:30.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:34:30.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:34:30.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:30.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:34:30.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:34:30.854 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:30.854 -07 000000462 INF: Autofocus start
17-03-18 02:34:30.854 -07 000000462 INF: MeasureProfile start
17-03-18 02:34:30.854 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:30.864 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:30.864 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:30.864 -07 000000462 INF: MeasureProfile done
17-03-18 02:34:30.864 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:34:30.864 -07 000000462 INF: Autofocus finished
17-03-18 02:34:31.064 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:31.064 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:31.084 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.173734251757736. ----------
17-03-18 02:34:31.084 -07 000000610 INF: Cycle	101	Tile	14	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:31.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36482, sync = True, waitForSettling = True)
17-03-18 02:34:31.084 -07 000000610 INF: Z Motor: Moving to -0.167004 mm, started at -0.173734 mm, distance = 6.73 um
17-03-18 02:34:31.084 -07 000000610 INF: FPGA: Xmit ZDACW 36482\n [Z Motor]
17-03-18 02:34:31.094 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:34:31.094 -07 000000610 INF: FPGA: 'ZDACW 36482' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:34:31.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:31.094 -07 000000430 INF: FPGA: Recv ZDACR 36482
17-03-18 02:34:31.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:31.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.254 -07 000000618 INF: FPGA: Recv ZSGSRD 35295
17-03-18 02:34:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.264 -07 000000629 INF: FPGA: Recv ZSGSRD 35286
17-03-18 02:34:31.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.274 -07 000000590 INF: FPGA: Recv ZSGSRD 35287
17-03-18 02:34:31.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.284 -07 000000512 INF: FPGA: Recv ZSGSRD 35285
17-03-18 02:34:31.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.294 -07 000000591 INF: FPGA: Recv ZSGSRD 35286
17-03-18 02:34:31.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.304 -07 000000626 INF: FPGA: Recv ZSGSRD 35292
17-03-18 02:34:31.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.314 -07 000000461 INF: FPGA: Recv ZSGSRD 35291
17-03-18 02:34:31.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.324 -07 000000579 INF: FPGA: Recv ZSGSRD 35291
17-03-18 02:34:31.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.334 -07 000000462 INF: FPGA: Recv ZSGSRD 35279
17-03-18 02:34:31.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:31.344 -07 000000430 INF: FPGA: Recv ZSGSRD 35293
17-03-18 02:34:31.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:31.354 -07 000000618 INF: FPGA: Recv ZPIEZORD 31075
17-03-18 02:34:31.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:31.364 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.3 V.
17-03-18 02:34:31.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35288 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35289 (-166.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35279 (-166.1 uncal um), Max = 35295 (-166.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:34:31.364 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35288, posNoise = 7, negNoise = 9
17-03-18 02:34:31.364 -07 000000610 INF: Z Motor: After move to -0.167004, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:31.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:34:31.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:31.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:31.364 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:31.364 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:31.364 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:31.364 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:31.364 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:31.364 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:31.364 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:31.364 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:31.364 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:31.364 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:31.374 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:31.374 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:31.374 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:34:31.374 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:31.384 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:34:31.384 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:31.384 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:34:31.384 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:31.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36658 150\n [Camera]
17-03-18 02:34:31.494 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:31.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:31.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:31.984 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:31.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:31.984 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:31.984 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:31.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:31.984 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:31.984 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:31.984 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:34:31.994 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:31.994 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:34:32.174 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36658 781
17-03-18 02:34:32.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:32.364 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:34:32.364 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:34:32.364 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:32.374 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:32.374 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:34:32.374 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:34:32.374 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:34:32.374 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:32.374 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:32.384 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:34:32.514 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:32.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:32.514 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:32.514 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:32.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:32.514 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:32.514 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:34:32.514 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:32.514 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:32.514 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:34:32.704 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:34:32.704 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:32.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36658 150' command took 2 ms to send, 1315 ms to get response, and 1322 ms overall
17-03-18 02:34:32.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:32.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167020950069596. ------
17-03-18 02:34:32.834 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17379 mm
17-03-18 02:34:32.834 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:32.834 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:32.834 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:34:32.834 -07 000000461 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:34:32.834 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37965, sync = True, waitForSettling = False)
17-03-18 02:34:32.834 -07 000000430 INF: Z Motor: Moving to -0.173793 mm, started at -0.167021 mm, distance = -6.77 um
17-03-18 02:34:32.834 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:32.844 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:32.844 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:32.844 -07 000000590 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:34:32.854 -07 000000430 INF: FPGA: Xmit ZDACW 37965\n [Z Motor]
17-03-18 02:34:32.854 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:34:32.854 -07 000000461 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:32.854 -07 000000461 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:32.854 -07 000000461 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:34:32.854 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:34:32.864 -07 000000430 INF: FPGA: 'ZDACW 37965' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:34:32.864 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:32.874 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:32.884 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:32.884 -07 000000606 INF: FPGA: Recv ZDACR 37965
17-03-18 02:34:32.894 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:32.894 -07 000000430 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:34:32.904 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:34:32.904 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:34:32.904 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:32.904 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:34:32.904 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:34:32.904 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:32.914 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:32.914 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:32.914 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:34:32.924 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:34:33.064 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:33.064 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:34:33.244 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:34:33.244 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:34:33.294 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:33.294 -07 000000576 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:34:33.304 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:33.304 -07 000000461 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:33.304 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:34:33.304 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 02:34:34.254 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:34.254 -07 000000618 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:34:34.264 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.264 -07 000000461 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:34.284 -07 000000461 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:34.284 -07 000000461 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:34:34.284 -07 000000461 INF: Y Motor: Moved to 71.5190 after 1454 ms (table move)
17-03-18 02:34:34.294 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173793 mm (DAC = 37965)
17-03-18 02:34:34.294 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.294 -07 000000579 INF: FPGA: Recv ZSGSRD 36346
17-03-18 02:34:34.304 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:34.304 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.304 -07 000000502 INF: FPGA: Recv ZSGSRD 36344
17-03-18 02:34:34.314 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.314 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.314 -07 000000462 INF: FPGA: Recv ZSGSRD 36349
17-03-18 02:34:34.324 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.324 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.324 -07 000000606 INF: FPGA: Recv ZSGSRD 36349
17-03-18 02:34:34.334 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.334 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.334 -07 000000430 INF: FPGA: Recv ZSGSRD 36343
17-03-18 02:34:34.344 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.344 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.344 -07 000000467 INF: FPGA: Recv ZSGSRD 36347
17-03-18 02:34:34.354 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.364 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.364 -07 000000576 INF: FPGA: Recv ZSGSRD 36342
17-03-18 02:34:34.374 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:34:34.374 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.374 -07 000000462 INF: FPGA: Recv ZSGSRD 36340
17-03-18 02:34:34.384 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.384 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.384 -07 000000424 INF: FPGA: Recv ZSGSRD 36340
17-03-18 02:34:34.394 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.394 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:34.394 -07 000000569 INF: FPGA: Recv ZSGSRD 36346
17-03-18 02:34:34.404 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.404 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:34.404 -07 000000467 INF: FPGA: Recv ZPIEZORD 32465
17-03-18 02:34:34.414 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:34.414 -07 000000455 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.793 V. Piezo Error = -8.6 V.
17-03-18 02:34:34.414 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36345 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36345 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36340 (-172.9 uncal um), Max = 36349 (-173.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:34:34.414 -07 000000455 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36345, posNoise = 4, negNoise = 5
17-03-18 02:34:34.414 -07 000000455 INF: Z Motor: After move to -0.173793, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:34.414 -07 000000455 INF: Z Motor: Settle wait time = 1458 ms, measure time = 117 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:34:34.414 -07 000000455 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:34.454 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:34:34.454 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:34.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:34.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:34.454 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:34.454 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:34.454 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:34.454 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:34.454 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:34.454 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:34.464 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:34.464 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:34.464 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:34:34.464 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:34:34.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:34.514 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:34.674 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.981281,
17-03-18 02:34:34.814 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:34.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:34.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:34.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:34:34.854 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:34.854 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:34.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:34:34.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:34:34.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:34.934 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:34:34.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:34:34.954 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:34.954 -07 000000424 INF: Autofocus start
17-03-18 02:34:34.954 -07 000000424 INF: MeasureProfile start
17-03-18 02:34:34.954 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:34.964 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:34.964 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:34.964 -07 000000424 INF: MeasureProfile done
17-03-18 02:34:34.964 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:34:34.964 -07 000000424 INF: Autofocus finished
17-03-18 02:34:35.164 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:35.164 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:35.164 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.173811342303437. ----------
17-03-18 02:34:35.164 -07 000000610 INF: Cycle	101	Tile	15	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:35.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36462, sync = True, waitForSettling = True)
17-03-18 02:34:35.174 -07 000000610 INF: Z Motor: Moving to -0.166912 mm, started at -0.173811 mm, distance = 6.90 um
17-03-18 02:34:35.174 -07 000000610 INF: FPGA: Xmit ZDACW 36462\n [Z Motor]
17-03-18 02:34:35.174 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:34:35.184 -07 000000610 INF: FPGA: 'ZDACW 36462' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:35.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:35.184 -07 000000576 INF: FPGA: Recv ZDACR 36462
17-03-18 02:34:35.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:35.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.344 -07 000000430 INF: FPGA: Recv ZSGSRD 35275
17-03-18 02:34:35.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.354 -07 000000626 INF: FPGA: Recv ZSGSRD 35275
17-03-18 02:34:35.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.364 -07 000000467 INF: FPGA: Recv ZSGSRD 35274
17-03-18 02:34:35.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.374 -07 000000462 INF: FPGA: Recv ZSGSRD 35272
17-03-18 02:34:35.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.384 -07 000000501 INF: FPGA: Recv ZSGSRD 35272
17-03-18 02:34:35.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.394 -07 000000502 INF: FPGA: Recv ZSGSRD 35273
17-03-18 02:34:35.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.404 -07 000000569 INF: FPGA: Recv ZSGSRD 35271
17-03-18 02:34:35.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.414 -07 000000444 INF: FPGA: Recv ZSGSRD 35274
17-03-18 02:34:35.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.424 -07 000000606 INF: FPGA: Recv ZSGSRD 35267
17-03-18 02:34:35.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:35.434 -07 000000576 INF: FPGA: Recv ZSGSRD 35272
17-03-18 02:34:35.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:35.444 -07 000000430 INF: FPGA: Recv ZPIEZORD 31003
17-03-18 02:34:35.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:35.454 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -9.4 V.
17-03-18 02:34:35.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35272 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35272 (-166.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35267 (-166.0 uncal um), Max = 35275 (-166.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:34:35.454 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35272, posNoise = 3, negNoise = 5
17-03-18 02:34:35.454 -07 000000610 INF: Z Motor: After move to -0.166912, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:35.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:34:35.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:35.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:35.454 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:35.454 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:35.454 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:35.454 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:35.454 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:35.454 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:35.454 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:35.454 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:35.454 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:35.454 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:35.464 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:35.464 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:35.464 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:34:35.464 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:35.464 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:34:35.474 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:34:35.474 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:34:35.474 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:34:35.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36639 150\n [Camera]
17-03-18 02:34:35.674 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:36.064 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:36.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:36.074 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:36.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:36.074 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:36.074 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:36.074 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:36.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:34:36.074 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:36.074 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:34:36.264 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36639 781
17-03-18 02:34:36.414 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:36.464 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:34:36.464 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:34:36.464 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:36.464 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:34:36.464 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:34:36.464 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:36.464 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:36.464 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:34:36.464 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:36.474 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:34:36.494 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:36.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:36.604 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:36.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:36.604 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:36.604 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:36.604 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:34:36.604 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:36.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:36.604 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:36.604 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:36.604 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:34:36.794 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:36.794 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:36.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36639 150' command took 2 ms to send, 1313 ms to get response, and 1321 ms overall
17-03-18 02:34:36.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:36.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.166918162675327. ------
17-03-18 02:34:36.804 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:36.804 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17330 mm
17-03-18 02:34:36.804 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:36.804 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:34:36.804 -07 000000467 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:34:36.804 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:36.804 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37857, sync = True, waitForSettling = False)
17-03-18 02:34:36.804 -07 000000606 INF: Z Motor: Moving to -0.173298 mm, started at -0.166918 mm, distance = -6.38 um
17-03-18 02:34:36.814 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:36.814 -07 000000606 INF: FPGA: Xmit ZDACW 37857\n [Z Motor]
17-03-18 02:34:36.814 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:34:36.824 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:36.824 -07 000000606 INF: FPGA: 'ZDACW 37857' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:34:36.824 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:34:36.834 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:36.834 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:34:36.834 -07 000000467 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:36.834 -07 000000467 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:36.834 -07 000000467 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:34:36.844 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:36.844 -07 000000424 INF: FPGA: Recv ZDACR 37857
17-03-18 02:34:36.854 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:36.854 -07 000000606 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:34:36.854 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:37.004 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:34:37.004 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:34:37.004 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:37.004 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:34:37.004 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:34:37.004 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:37.014 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:37.014 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:34:37.014 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:34:37.014 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:34:37.034 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:37.034 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:34:37.224 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:34:37.224 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:34:37.274 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:37.274 -07 000000461 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:34:37.284 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:37.284 -07 000000467 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:37.284 -07 000000467 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:34:37.284 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 02:34:38.234 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:38.234 -07 000000576 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:34:38.244 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:38.244 -07 000000467 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:38.274 -07 000000467 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:38.274 -07 000000467 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:34:38.274 -07 000000467 INF: Y Motor: Moved to 72.3496 after 1466 ms (table move)
17-03-18 02:34:38.274 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173298 mm (DAC = 37857)
17-03-18 02:34:38.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.274 -07 000000501 INF: FPGA: Recv ZSGSRD 36270
17-03-18 02:34:38.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:34:38.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.284 -07 000000576 INF: FPGA: Recv ZSGSRD 36261
17-03-18 02:34:38.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.294 -07 000000579 INF: FPGA: Recv ZSGSRD 36267
17-03-18 02:34:38.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.304 -07 000000444 INF: FPGA: Recv ZSGSRD 36267
17-03-18 02:34:38.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.314 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.314 -07 000000462 INF: FPGA: Recv ZSGSRD 36267
17-03-18 02:34:38.324 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.324 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.324 -07 000000444 INF: FPGA: Recv ZSGSRD 36266
17-03-18 02:34:38.334 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.334 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.334 -07 000000561 INF: FPGA: Recv ZSGSRD 36262
17-03-18 02:34:38.344 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.344 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.344 -07 000000626 INF: FPGA: Recv ZSGSRD 36266
17-03-18 02:34:38.354 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.354 -07 000000424 INF: FPGA: Recv ZSGSRD 36264
17-03-18 02:34:38.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:38.364 -07 000000590 INF: FPGA: Recv ZSGSRD 36265
17-03-18 02:34:38.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.374 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:38.374 -07 000000501 INF: FPGA: Recv ZPIEZORD 32345
17-03-18 02:34:38.384 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:38.384 -07 000000512 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.777 V. Piezo Error = -8.7 V.
17-03-18 02:34:38.384 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36266 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36266 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36261 (-172.4 uncal um), Max = 36270 (-172.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:34:38.384 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36266, posNoise = 4, negNoise = 5
17-03-18 02:34:38.384 -07 000000512 INF: Z Motor: After move to -0.173298, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:38.384 -07 000000512 INF: Z Motor: Settle wait time = 1470 ms, measure time = 105 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:34:38.384 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:38.434 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 02:34:38.434 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:38.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:38.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:38.434 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:38.434 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:38.434 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:38.434 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:38.444 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:38.444 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:38.444 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:38.444 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:38.454 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:34:38.454 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:34:38.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:38.494 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:38.794 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:38.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:38.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:38.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:34:38.834 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:38.834 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:38.834 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:34:38.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:34:38.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:38.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:34:38.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:34:38.934 -07 000000629 INF: Autofocus start
17-03-18 02:34:38.934 -07 000000629 INF: MeasureProfile start
17-03-18 02:34:38.934 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:38.934 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:38.944 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:34:38.944 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:38.944 -07 000000629 INF: MeasureProfile done
17-03-18 02:34:38.944 -07 000000629 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:34:38.944 -07 000000629 INF: Autofocus finished
17-03-18 02:34:39.144 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:39.144 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:39.144 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173303829544238. ----------
17-03-18 02:34:39.154 -07 000000610 INF: Cycle	101	Tile	16	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:39.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36390, sync = True, waitForSettling = True)
17-03-18 02:34:39.154 -07 000000610 INF: Z Motor: Moving to -0.166583 mm, started at -0.173304 mm, distance = 6.72 um
17-03-18 02:34:39.154 -07 000000610 INF: FPGA: Xmit ZDACW 36390\n [Z Motor]
17-03-18 02:34:39.154 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:34:39.164 -07 000000610 INF: FPGA: 'ZDACW 36390' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:39.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:39.164 -07 000000579 INF: FPGA: Recv ZDACR 36390
17-03-18 02:34:39.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:39.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.324 -07 000000512 INF: FPGA: Recv ZSGSRD 35221
17-03-18 02:34:39.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:39.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.334 -07 000000590 INF: FPGA: Recv ZSGSRD 35226
17-03-18 02:34:39.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.344 -07 000000618 INF: FPGA: Recv ZSGSRD 35223
17-03-18 02:34:39.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.354 -07 000000579 INF: FPGA: Recv ZSGSRD 35215
17-03-18 02:34:39.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.364 -07 000000462 INF: FPGA: Recv ZSGSRD 35225
17-03-18 02:34:39.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.374 -07 000000430 INF: FPGA: Recv ZSGSRD 35217
17-03-18 02:34:39.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.384 -07 000000626 INF: FPGA: Recv ZSGSRD 35220
17-03-18 02:34:39.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.394 -07 000000461 INF: FPGA: Recv ZSGSRD 35223
17-03-18 02:34:39.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.404 -07 000000591 INF: FPGA: Recv ZSGSRD 35222
17-03-18 02:34:39.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:39.414 -07 000000467 INF: FPGA: Recv ZSGSRD 35222
17-03-18 02:34:39.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:39.424 -07 000000606 INF: FPGA: Recv ZPIEZORD 30961
17-03-18 02:34:39.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:39.434 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.4 V.
17-03-18 02:34:39.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35221 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35222 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35215 (-165.7 uncal um), Max = 35226 (-165.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:34:39.434 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35221, posNoise = 5, negNoise = 6
17-03-18 02:34:39.434 -07 000000610 INF: Z Motor: After move to -0.166583, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:39.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:34:39.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:39.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:39.434 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:39.434 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:39.434 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:39.434 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:39.434 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:39.434 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:39.434 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:39.434 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:39.434 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:39.434 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:39.444 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:39.444 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:39.444 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:34:39.444 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:39.454 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:34:39.454 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:39.454 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:34:39.454 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:39.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36567 150\n [Camera]
17-03-18 02:34:39.654 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:40.034 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.990831,
17-03-18 02:34:40.044 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:34:40.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:34:40.054 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:40.054 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:40.054 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:34:40.054 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:34:40.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:34:40.054 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:40.054 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:40.054 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:34:40.244 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36567 781
17-03-18 02:34:40.394 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:34:40.454 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:34:40.454 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:34:40.454 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:40.454 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:34:40.454 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:34:40.454 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:40.454 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:40.454 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:34:40.454 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:40.464 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:34:40.584 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:40.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:40.584 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:40.584 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:40.584 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:34:40.584 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:40.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:40.584 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:40.584 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:40.584 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:34:40.774 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:40.774 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:40.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36567 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:34:40.774 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:40.774 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166590527856098. ------
17-03-18 02:34:40.904 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:40.904 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17316 mm
17-03-18 02:34:40.904 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:40.904 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:40.904 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:34:40.904 -07 000000561 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 02:34:40.904 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37827, sync = True, waitForSettling = False)
17-03-18 02:34:40.904 -07 000000579 INF: Z Motor: Moving to -0.173161 mm, started at -0.166591 mm, distance = -6.57 um
17-03-18 02:34:40.914 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:40.914 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:40.914 -07 000000424 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:34:40.924 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:34:40.924 -07 000000561 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:40.924 -07 000000579 INF: FPGA: Xmit ZDACW 37827\n [Z Motor]
17-03-18 02:34:40.924 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:34:40.924 -07 000000561 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:40.924 -07 000000561 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:34:40.934 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:40.934 -07 000000579 INF: FPGA: 'ZDACW 37827' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:34:40.944 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:40.954 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:40.954 -07 000000461 INF: FPGA: Recv ZDACR 37827
17-03-18 02:34:40.964 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:40.964 -07 000000579 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:34:40.984 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:34:40.984 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:34:40.984 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:40.984 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:34:40.984 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:34:40.984 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:40.994 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:40.994 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:34:40.994 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:34:40.994 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:34:41.134 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:41.134 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:34:41.314 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:34:41.314 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 02:34:41.364 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:41.364 -07 000000591 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:34:41.374 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:41.374 -07 000000561 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:41.374 -07 000000561 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:34:41.374 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.162 mm/sec
17-03-18 02:34:41.494 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:41.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:42.324 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:42.324 -07 000000455 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:34:42.334 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:42.334 -07 000000561 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:42.354 -07 000000561 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:42.354 -07 000000561 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:34:42.354 -07 000000561 INF: Y Motor: Moved to 73.1763 after 1453 ms (table move)
17-03-18 02:34:42.364 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173161 mm (DAC = 37827)
17-03-18 02:34:42.364 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.364 -07 000000455 INF: FPGA: Recv ZSGSRD 36249
17-03-18 02:34:42.374 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:34:42.374 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.374 -07 000000618 INF: FPGA: Recv ZSGSRD 36245
17-03-18 02:34:42.384 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:42.384 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.384 -07 000000444 INF: FPGA: Recv ZSGSRD 36242
17-03-18 02:34:42.394 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:42.394 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.394 -07 000000502 INF: FPGA: Recv ZSGSRD 36251
17-03-18 02:34:42.404 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:42.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.404 -07 000000467 INF: FPGA: Recv ZSGSRD 36246
17-03-18 02:34:42.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:42.414 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.414 -07 000000461 INF: FPGA: Recv ZSGSRD 36244
17-03-18 02:34:42.424 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:42.424 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.424 -07 000000606 INF: FPGA: Recv ZSGSRD 36245
17-03-18 02:34:42.434 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:42.434 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.434 -07 000000444 INF: FPGA: Recv ZSGSRD 36244
17-03-18 02:34:42.444 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:42.444 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.444 -07 000000629 INF: FPGA: Recv ZSGSRD 36245
17-03-18 02:34:42.454 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:42.454 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:42.454 -07 000000424 INF: FPGA: Recv ZSGSRD 36246
17-03-18 02:34:42.464 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:42.464 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:42.464 -07 000000467 INF: FPGA: Recv ZPIEZORD 32318
17-03-18 02:34:42.474 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:42.474 -07 000000626 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.7 V.
17-03-18 02:34:42.474 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36246 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36245 (-172.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36242 (-172.3 uncal um), Max = 36251 (-172.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:34:42.474 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36246, posNoise = 5, negNoise = 4
17-03-18 02:34:42.474 -07 000000626 INF: Z Motor: After move to -0.173161, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:42.474 -07 000000626 INF: Z Motor: Settle wait time = 1457 ms, measure time = 107 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:34:42.474 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:42.524 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:34:42.524 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:42.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:42.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:42.524 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:42.524 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:42.524 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:42.524 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:42.524 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:42.524 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:42.534 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:42.534 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:42.534 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:34:42.534 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:34:42.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:42.584 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:42.884 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:42.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:42.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:42.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:34:42.924 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:42.924 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:42.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 387 ms overall
17-03-18 02:34:43.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:34:43.004 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:43.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:34:43.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:34:43.024 -07 000000569 INF: Autofocus start
17-03-18 02:34:43.024 -07 000000569 INF: MeasureProfile start
17-03-18 02:34:43.024 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:43.024 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:43.034 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:43.034 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:43.034 -07 000000569 INF: MeasureProfile done
17-03-18 02:34:43.034 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:34:43.034 -07 000000569 INF: Autofocus finished
17-03-18 02:34:43.234 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:43.234 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:43.234 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173175345301403. ----------
17-03-18 02:34:43.234 -07 000000610 INF: Cycle	101	Tile	17	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:43.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36342, sync = True, waitForSettling = True)
17-03-18 02:34:43.244 -07 000000610 INF: Z Motor: Moving to -0.166363 mm, started at -0.173175 mm, distance = 6.81 um
17-03-18 02:34:43.244 -07 000000610 INF: FPGA: Xmit ZDACW 36342\n [Z Motor]
17-03-18 02:34:43.244 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:34:43.254 -07 000000610 INF: FPGA: 'ZDACW 36342' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:43.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:43.254 -07 000000606 INF: FPGA: Recv ZDACR 36342
17-03-18 02:34:43.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:43.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.414 -07 000000461 INF: FPGA: Recv ZSGSRD 35189
17-03-18 02:34:43.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.424 -07 000000569 INF: FPGA: Recv ZSGSRD 35185
17-03-18 02:34:43.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.434 -07 000000424 INF: FPGA: Recv ZSGSRD 35195
17-03-18 02:34:43.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.444 -07 000000501 INF: FPGA: Recv ZSGSRD 35184
17-03-18 02:34:43.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.454 -07 000000561 INF: FPGA: Recv ZSGSRD 35187
17-03-18 02:34:43.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.464 -07 000000461 INF: FPGA: Recv ZSGSRD 35192
17-03-18 02:34:43.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.474 -07 000000591 INF: FPGA: Recv ZSGSRD 35189
17-03-18 02:34:43.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.484 -07 000000462 INF: FPGA: Recv ZSGSRD 35190
17-03-18 02:34:43.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.494 -07 000000467 INF: FPGA: Recv ZSGSRD 35187
17-03-18 02:34:43.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:43.504 -07 000000606 INF: FPGA: Recv ZSGSRD 35183
17-03-18 02:34:43.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:43.514 -07 000000461 INF: FPGA: Recv ZPIEZORD 30896
17-03-18 02:34:43.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:43.524 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.545 V. Piezo Error = -9.5 V.
17-03-18 02:34:43.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35188 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35188 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35183 (-165.5 uncal um), Max = 35195 (-165.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:34:43.524 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35188, posNoise = 7, negNoise = 5
17-03-18 02:34:43.524 -07 000000610 INF: Z Motor: After move to -0.166363, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:43.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:34:43.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:43.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:43.524 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:43.524 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:43.524 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:43.524 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:43.524 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:43.524 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:43.524 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:43.524 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:43.524 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:43.524 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:43.534 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:34:43.534 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:43.534 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:43.534 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:43.544 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:34:43.544 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:43.544 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:34:43.544 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:34:43.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36519 150\n [Camera]
17-03-18 02:34:43.744 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:44.144 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:44.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:44.144 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:44.144 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:44.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:44.144 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:44.144 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:44.144 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:34:44.154 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:44.154 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:34:44.334 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36519 781
17-03-18 02:34:44.484 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:44.544 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:34:44.544 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:34:44.544 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:44.544 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:44.544 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:34:44.544 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:34:44.544 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:34:44.544 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:44.554 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:44.554 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:34:44.674 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:44.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:44.674 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:44.674 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:44.674 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:34:44.674 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:44.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:44.674 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:44.674 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:44.674 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:34:44.864 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:44.864 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:44.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36519 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:34:44.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:44.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.16637852885542. ------
17-03-18 02:34:44.984 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17261 mm
17-03-18 02:34:44.984 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:44.984 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:34:44.984 -07 000000461 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:34:44.984 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37706, sync = True, waitForSettling = False)
17-03-18 02:34:44.984 -07 000000579 INF: Z Motor: Moving to -0.172607 mm, started at -0.166379 mm, distance = -6.23 um
17-03-18 02:34:44.994 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:44.994 -07 000000467 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:34:45.004 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:45.004 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:45.004 -07 000000461 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:45.004 -07 000000461 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:45.004 -07 000000461 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:34:45.004 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:45.014 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:34:45.014 -07 000000579 INF: FPGA: Xmit ZDACW 37706\n [Z Motor]
17-03-18 02:34:45.014 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:34:45.024 -07 000000579 INF: FPGA: 'ZDACW 37706' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:34:45.034 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:45.044 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:45.054 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:45.054 -07 000000591 INF: FPGA: Recv ZDACR 37706
17-03-18 02:34:45.064 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:34:45.064 -07 000000579 INF: Z Motor: MoveAbsStepped took 70 ms (did NOT wait for settling yet))
17-03-18 02:34:45.074 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:34:45.074 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:34:45.074 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:45.074 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:34:45.074 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:34:45.074 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:45.084 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:45.084 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:45.084 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:34:45.084 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:34:45.244 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:45.244 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 02:34:45.394 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.985358,
17-03-18 02:34:45.404 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:34:45.404 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 02:34:45.444 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:45.454 -07 000000606 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:34:45.454 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:34:45.454 -07 000000461 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:45.454 -07 000000461 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:34:45.454 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.846 mm, average velocity = 2.079 mm/sec
17-03-18 02:34:46.404 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:46.404 -07 000000467 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:34:46.414 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:46.414 -07 000000461 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:46.434 -07 000000461 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:46.434 -07 000000461 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:34:46.434 -07 000000461 INF: Y Motor: Moved to 74.0083 after 1441 ms (table move)
17-03-18 02:34:46.434 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172607 mm (DAC = 37706)
17-03-18 02:34:46.434 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.434 -07 000000579 INF: FPGA: Recv ZSGSRD 36158
17-03-18 02:34:46.444 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:34:46.444 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.444 -07 000000455 INF: FPGA: Recv ZSGSRD 36160
17-03-18 02:34:46.454 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:46.454 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.454 -07 000000590 INF: FPGA: Recv ZSGSRD 36151
17-03-18 02:34:46.464 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:46.464 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.464 -07 000000626 INF: FPGA: Recv ZSGSRD 36163
17-03-18 02:34:46.474 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:46.474 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.474 -07 000000501 INF: FPGA: Recv ZSGSRD 36162
17-03-18 02:34:46.484 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:46.484 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.484 -07 000000561 INF: FPGA: Recv ZSGSRD 36159
17-03-18 02:34:46.494 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:46.494 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.494 -07 000000502 INF: FPGA: Recv ZSGSRD 36164
17-03-18 02:34:46.494 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:46.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:46.504 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:46.504 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.504 -07 000000455 INF: FPGA: Recv ZSGSRD 36154
17-03-18 02:34:46.514 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:46.514 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.514 -07 000000626 INF: FPGA: Recv ZSGSRD 36158
17-03-18 02:34:46.524 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:46.524 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:46.524 -07 000000579 INF: FPGA: Recv ZSGSRD 36160
17-03-18 02:34:46.534 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:46.534 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:46.534 -07 000000430 INF: FPGA: Recv ZPIEZORD 32231
17-03-18 02:34:46.544 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:46.544 -07 000000462 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.7 V.
17-03-18 02:34:46.544 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36159 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36160 (-171.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36151 (-171.7 uncal um), Max = 36164 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:34:46.544 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36159, posNoise = 5, negNoise = 8
17-03-18 02:34:46.544 -07 000000462 INF: Z Motor: After move to -0.172607, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:46.544 -07 000000462 INF: Z Motor: Settle wait time = 1444 ms, measure time = 106 ms (allowed 150 ms), total time = 1550 ms
17-03-18 02:34:46.544 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:46.594 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 02:34:46.594 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:46.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:46.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:46.594 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:46.594 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:46.594 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:46.594 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:46.604 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:46.604 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:46.604 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:46.604 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:46.614 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:34:46.614 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:34:46.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:46.654 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:46.954 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:46.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:46.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:46.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:34:46.994 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:46.994 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:46.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:34:47.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:34:47.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:47.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:34:47.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:34:47.094 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:47.094 -07 000000462 INF: Autofocus start
17-03-18 02:34:47.094 -07 000000462 INF: MeasureProfile start
17-03-18 02:34:47.094 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:47.104 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:34:47.104 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:47.104 -07 000000462 INF: MeasureProfile done
17-03-18 02:34:47.104 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:34:47.104 -07 000000462 INF: Autofocus finished
17-03-18 02:34:47.304 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:47.304 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:47.304 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172616438845069. ----------
17-03-18 02:34:47.314 -07 000000610 INF: Cycle	101	Tile	18	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:47.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36239, sync = True, waitForSettling = True)
17-03-18 02:34:47.314 -07 000000610 INF: Z Motor: Moving to -0.165892 mm, started at -0.172616 mm, distance = 6.72 um
17-03-18 02:34:47.314 -07 000000610 INF: FPGA: Xmit ZDACW 36239\n [Z Motor]
17-03-18 02:34:47.314 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:34:47.324 -07 000000610 INF: FPGA: 'ZDACW 36239' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:34:47.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:47.324 -07 000000455 INF: FPGA: Recv ZDACR 36239
17-03-18 02:34:47.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:47.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.484 -07 000000629 INF: FPGA: Recv ZSGSRD 35115
17-03-18 02:34:47.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:47.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.494 -07 000000501 INF: FPGA: Recv ZSGSRD 35110
17-03-18 02:34:47.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.504 -07 000000569 INF: FPGA: Recv ZSGSRD 35111
17-03-18 02:34:47.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.514 -07 000000576 INF: FPGA: Recv ZSGSRD 35112
17-03-18 02:34:47.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.524 -07 000000430 INF: FPGA: Recv ZSGSRD 35118
17-03-18 02:34:47.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.534 -07 000000626 INF: FPGA: Recv ZSGSRD 35120
17-03-18 02:34:47.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.544 -07 000000462 INF: FPGA: Recv ZSGSRD 35115
17-03-18 02:34:47.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.554 -07 000000512 INF: FPGA: Recv ZSGSRD 35113
17-03-18 02:34:47.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.564 -07 000000591 INF: FPGA: Recv ZSGSRD 35120
17-03-18 02:34:47.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:47.574 -07 000000444 INF: FPGA: Recv ZSGSRD 35114
17-03-18 02:34:47.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:47.584 -07 000000569 INF: FPGA: Recv ZPIEZORD 30829
17-03-18 02:34:47.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:47.594 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -9.4 V.
17-03-18 02:34:47.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35115 (-165.0 uncal um), Error = 0.8 uncal um, Median = 35114 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35110 (-165.0 uncal um), Max = 35120 (-165.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:34:47.594 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35115, posNoise = 5, negNoise = 5
17-03-18 02:34:47.594 -07 000000610 INF: Z Motor: After move to -0.165892, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:47.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:34:47.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:47.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:47.594 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:47.594 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:47.594 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:47.594 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:47.594 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:47.594 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:47.594 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:34:47.594 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:47.594 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:47.594 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:47.604 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:47.604 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:34:47.604 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:47.604 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:47.614 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:34:47.614 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:34:47.614 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:34:47.614 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:34:47.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36415 150\n [Camera]
17-03-18 02:34:47.814 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:34:48.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:48.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:48.214 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:48.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:48.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:48.214 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:48.214 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:48.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:34:48.214 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:48.214 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:34:48.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36415 781
17-03-18 02:34:48.554 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:48.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:34:48.614 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:34:48.614 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:48.614 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:48.614 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:34:48.614 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:34:48.614 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:34:48.614 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:48.624 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:48.624 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:34:48.744 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:48.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:48.744 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:48.744 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:48.744 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:34:48.744 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:48.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:48.744 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:48.744 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:48.744 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:34:48.934 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:48.934 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:48.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36415 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-18 02:34:48.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:34:48.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165909561369071. ------
17-03-18 02:34:48.944 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:48.944 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17179 mm
17-03-18 02:34:48.944 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:48.944 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:48.944 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:34:48.944 -07 000000561 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:34:48.944 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37528, sync = True, waitForSettling = False)
17-03-18 02:34:48.944 -07 000000430 INF: Z Motor: Moving to -0.171792 mm, started at -0.165910 mm, distance = -5.88 um
17-03-18 02:34:48.954 -07 000000430 INF: FPGA: Xmit ZDACW 37528\n [Z Motor]
17-03-18 02:34:48.954 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:48.954 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:34:48.964 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:48.964 -07 000000430 INF: FPGA: 'ZDACW 37528' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:34:48.964 -07 000000424 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:34:48.974 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:48.974 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:34:48.974 -07 000000561 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:48.974 -07 000000561 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:34:48.974 -07 000000561 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:34:48.984 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:48.984 -07 000000424 INF: FPGA: Recv ZDACR 37528
17-03-18 02:34:48.994 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:48.994 -07 000000430 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:34:48.994 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:34:49.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:34:49.134 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:34:49.134 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:49.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:34:49.134 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:34:49.134 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:49.134 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:49.144 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:34:49.144 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:34:49.144 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:34:49.174 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:49.174 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:34:49.364 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:34:49.364 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:34:49.394 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:49.404 -07 000000618 INF: FPGA: Recv YRDPOS 153255
17-03-18 02:34:49.404 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:34:49.404 -07 000000561 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:49.404 -07 000000561 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 02:34:49.404 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-18 02:34:50.354 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:50.354 -07 000000626 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:34:50.364 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:50.364 -07 000000561 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:50.374 -07 000000561 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:50.374 -07 000000561 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:34:50.374 -07 000000561 INF: Y Motor: Moved to 74.8320 after 1432 ms (table move)
17-03-18 02:34:50.384 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171792 mm (DAC = 37528)
17-03-18 02:34:50.384 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.384 -07 000000626 INF: FPGA: Recv ZSGSRD 36042
17-03-18 02:34:50.394 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:50.394 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.394 -07 000000455 INF: FPGA: Recv ZSGSRD 36033
17-03-18 02:34:50.404 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:50.404 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.404 -07 000000461 INF: FPGA: Recv ZSGSRD 36028
17-03-18 02:34:50.414 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:50.434 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.434 -07 000000444 INF: FPGA: Recv ZSGSRD 36034
17-03-18 02:34:50.444 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:50.464 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.464 -07 000000629 INF: FPGA: Recv ZSGSRD 36033
17-03-18 02:34:50.474 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:50.474 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.474 -07 000000561 INF: FPGA: Recv ZSGSRD 36033
17-03-18 02:34:50.484 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:50.494 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.494 -07 000000590 INF: FPGA: Recv ZSGSRD 36027
17-03-18 02:34:50.504 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:34:50.514 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.514 -07 000000455 INF: FPGA: Recv ZSGSRD 36035
17-03-18 02:34:50.524 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:34:50.524 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.524 -07 000000569 INF: FPGA: Recv ZSGSRD 36032
17-03-18 02:34:50.534 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:50.534 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:50.534 -07 000000579 INF: FPGA: Recv ZSGSRD 36032
17-03-18 02:34:50.544 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:50.544 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:50.544 -07 000000591 INF: FPGA: Recv ZPIEZORD 32063
17-03-18 02:34:50.554 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:50.554 -07 000000462 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -8.8 V.
17-03-18 02:34:50.554 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36033 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36033 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36027 (-170.9 uncal um), Max = 36042 (-171.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:34:50.554 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36033, posNoise = 9, negNoise = 6
17-03-18 02:34:50.554 -07 000000462 INF: Z Motor: After move to -0.171792, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:50.554 -07 000000462 INF: Z Motor: Settle wait time = 1435 ms, measure time = 171 ms (allowed 150 ms), total time = 1606 ms
17-03-18 02:34:50.554 -07 000000462 INF: Z Motor: Warning: Actual position measuring time = 171 ms, longer than max expected time of 150 ms
17-03-18 02:34:50.554 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:34:50.554 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:50.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:50.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:50.564 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:50.564 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:50.564 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:50.564 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:50.564 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:50.564 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:50.564 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:50.564 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:50.574 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:34:50.574 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:34:50.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:50.624 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:50.764 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.990831,
17-03-18 02:34:50.924 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:50.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:50.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:50.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:34:50.964 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:50.964 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:50.964 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:34:51.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:34:51.034 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:51.034 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:34:51.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:34:51.064 -07 000000561 INF: Autofocus start
17-03-18 02:34:51.064 -07 000000561 INF: MeasureProfile start
17-03-18 02:34:51.064 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:51.064 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:51.074 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:51.074 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:51.074 -07 000000561 INF: MeasureProfile done
17-03-18 02:34:51.074 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:34:51.074 -07 000000561 INF: Autofocus finished
17-03-18 02:34:51.274 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:51.274 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:51.274 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.171806988115208. ----------
17-03-18 02:34:51.274 -07 000000610 INF: Cycle	101	Tile	19	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:51.284 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36025, sync = True, waitForSettling = True)
17-03-18 02:34:51.284 -07 000000610 INF: Z Motor: Moving to -0.164912 mm, started at -0.171807 mm, distance = 6.90 um
17-03-18 02:34:51.284 -07 000000610 INF: FPGA: Xmit ZDACW 36025\n [Z Motor]
17-03-18 02:34:51.284 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:34:51.294 -07 000000610 INF: FPGA: 'ZDACW 36025' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.294 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:51.294 -07 000000590 INF: FPGA: Recv ZDACR 36025
17-03-18 02:34:51.304 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.304 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:51.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.454 -07 000000561 INF: FPGA: Recv ZSGSRD 34964
17-03-18 02:34:51.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.464 -07 000000579 INF: FPGA: Recv ZSGSRD 34967
17-03-18 02:34:51.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.474 -07 000000618 INF: FPGA: Recv ZSGSRD 34960
17-03-18 02:34:51.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.484 -07 000000501 INF: FPGA: Recv ZSGSRD 34962
17-03-18 02:34:51.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.494 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:51.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:51.494 -07 000000618 INF: FPGA: Recv ZSGSRD 34961
17-03-18 02:34:51.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.504 -07 000000501 INF: FPGA: Recv ZSGSRD 34961
17-03-18 02:34:51.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.514 -07 000000629 INF: FPGA: Recv ZSGSRD 34960
17-03-18 02:34:51.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.524 -07 000000591 INF: FPGA: Recv ZSGSRD 34967
17-03-18 02:34:51.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.534 -07 000000606 INF: FPGA: Recv ZSGSRD 34962
17-03-18 02:34:51.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:51.544 -07 000000430 INF: FPGA: Recv ZSGSRD 34966
17-03-18 02:34:51.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.554 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:51.554 -07 000000467 INF: FPGA: Recv ZPIEZORD 30684
17-03-18 02:34:51.564 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:51.564 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.497 V. Piezo Error = -9.4 V.
17-03-18 02:34:51.564 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34963 (-164.1 uncal um), Error = 0.8 uncal um, Median = 34962 (-164.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 34960 (-164.1 uncal um), Max = 34967 (-164.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:34:51.564 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34963, posNoise = 4, negNoise = 3
17-03-18 02:34:51.564 -07 000000610 INF: Z Motor: After move to -0.164912, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:51.564 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:34:51.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:51.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:51.564 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:51.564 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:51.564 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:51.564 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:51.564 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:51.564 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:51.564 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:51.574 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:51.574 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:51.574 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:51.574 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:51.574 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:51.574 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 7 ms.
17-03-18 02:34:51.574 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:51.584 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:34:51.584 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:34:51.594 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:34:51.594 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:34:51.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 36202 150\n [Camera]
17-03-18 02:34:51.794 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:34:52.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:34:52.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:34:52.194 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:52.194 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:52.194 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:34:52.194 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:34:52.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:34:52.194 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:52.194 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:52.194 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:34:52.384 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36202 781
17-03-18 02:34:52.534 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:34:52.584 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:34:52.584 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:34:52.584 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:52.584 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:34:52.584 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:34:52.584 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:52.594 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:52.594 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:34:52.594 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:34:52.594 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:34:52.724 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:34:52.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:34:52.724 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:34:52.724 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:34:52.724 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:34:52.724 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:34:52.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:34:52.724 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:34:52.724 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:34:52.724 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:34:52.914 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:34:52.914 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:34:52.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 36202 150' command took 2 ms to send, 1316 ms to get response, and 1321 ms overall
17-03-18 02:34:53.134 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:34:53.134 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:34:53.134 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:53.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:34:53.134 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:34:53.134 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:53.134 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:34:53.134 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:34:53.134 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:34:53.134 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:34:53.144 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:34:53.184 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:34:53.184 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:34:53.224 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:34:53.224 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:34:53.224 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:34:53.224 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-18 02:34:53.234 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:34:53.234 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:34:53.734 -07 000000629 INF: FPGA: Recv EMIN
17-03-18 02:34:53.734 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:34:53.734 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:34:53.734 -07 000000467 INF: FPGA: Recv EMCUR 
17-03-18 02:34:53.744 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:53.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:34:53.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.164933081123523. ------
17-03-18 02:34:53.864 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:53.864 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13961 mm
17-03-18 02:34:53.864 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:34:53.864 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30497, sync = True, waitForSettling = False)
17-03-18 02:34:53.864 -07 000000618 INF: Z Motor: Moving to -0.139606 mm, started at -0.164933 mm, distance = 25.33 um
17-03-18 02:34:53.864 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:53.864 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:34:53.864 -07 000000561 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-18 02:34:53.874 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:34:53.874 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:53.874 -07 000000462 INF: FPGA: Recv YRDPOS 153257
17-03-18 02:34:53.884 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:53.884 -07 000000561 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:53.884 -07 000000618 INF: FPGA: Xmit ZDACW 30497\n [Z Motor]
17-03-18 02:34:53.884 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:34:53.884 -07 000000561 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:34:53.884 -07 000000561 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:34:53.894 -07 000000618 INF: FPGA: 'ZDACW 30497' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:34:53.894 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:34:53.904 -07 000000561 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:34:53.914 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:53.914 -07 000000606 INF: FPGA: Recv ZDACR 30497
17-03-18 02:34:53.924 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:34:53.924 -07 000000618 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:34:54.094 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:34:54.094 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 02:34:55.524 -07 000000512 INF: FPGA: Recv YMVTO 122703 23905
17-03-18 02:34:55.524 -07 000000561 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1644 ms overall
17-03-18 02:34:55.524 -07 000000561 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:34:55.524 -07 000000561 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23905 steps (14.941 mm). Slippage = 0.021 mm (0.00%).
17-03-18 02:34:55.524 -07 000000561 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-18 02:34:56.144 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.99219,
17-03-18 02:34:56.494 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:34:56.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:34:58.374 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:34:58.374 -07 000000576 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:34:58.384 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:58.384 -07 000000561 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:34:58.424 -07 000000561 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:34:58.424 -07 000000561 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 02:34:58.424 -07 000000561 INF: Y Motor: Moved to 59.9106 after 4555 ms
17-03-18 02:34:58.424 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139606 mm (DAC = 30497)
17-03-18 02:34:58.424 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.434 -07 000000430 INF: FPGA: Recv ZSGSRD 31027
17-03-18 02:34:58.434 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:34:58.434 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.434 -07 000000569 INF: FPGA: Recv ZSGSRD 31018
17-03-18 02:34:58.444 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:34:58.444 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.444 -07 000000502 INF: FPGA: Recv ZSGSRD 31016
17-03-18 02:34:58.454 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:58.454 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.454 -07 000000461 INF: FPGA: Recv ZSGSRD 31025
17-03-18 02:34:58.464 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:58.464 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.464 -07 000000424 INF: FPGA: Recv ZSGSRD 31019
17-03-18 02:34:58.474 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:58.474 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.474 -07 000000444 INF: FPGA: Recv ZSGSRD 31023
17-03-18 02:34:58.484 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:58.484 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.484 -07 000000462 INF: FPGA: Recv ZSGSRD 31024
17-03-18 02:34:58.494 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:58.494 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.494 -07 000000455 INF: FPGA: Recv ZSGSRD 31021
17-03-18 02:34:58.504 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:58.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.504 -07 000000467 INF: FPGA: Recv ZSGSRD 31028
17-03-18 02:34:58.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:58.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:58.514 -07 000000561 INF: FPGA: Recv ZSGSRD 31016
17-03-18 02:34:58.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:58.524 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:58.524 -07 000000502 INF: FPGA: Recv ZPIEZORD 26525
17-03-18 02:34:58.534 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:58.534 -07 000000591 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.654 V. Piezo Error = -9.9 V.
17-03-18 02:34:58.534 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31022 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31022 (-138.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31016 (-138.8 uncal um), Max = 31028 (-138.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:34:58.534 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31022, posNoise = 6, negNoise = 6
17-03-18 02:34:58.534 -07 000000591 INF: Z Motor: After move to -0.139606, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:58.534 -07 000000591 INF: Z Motor: Settle wait time = 4559 ms, measure time = 102 ms (allowed 150 ms), total time = 4661 ms
17-03-18 02:34:58.534 -07 000000591 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:34:58.584 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-18 02:34:58.584 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:34:58.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:58.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:58.584 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:58.584 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:58.584 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:34:58.584 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:58.584 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:34:58.584 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:34:58.604 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 02:34:58.604 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:34:58.614 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:34:58.614 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:34:58.614 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:34:58.614 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-18 02:34:58.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:34:58.664 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:34:58.964 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:34:58.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:34:58.964 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:34:58.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:34:59.004 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:34:59.004 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:34:59.004 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:34:59.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:34:59.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:34:59.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:34:59.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:34:59.104 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:34:59.104 -07 000000512 INF: Image SNR check: start
17-03-18 02:34:59.104 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:34:59.114 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:34:59.114 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:34:59.124 -07 000000512 INF: Image SNR check: pass  [peak (Max-Min)=135.79]
17-03-18 02:34:59.124 -07 000000512 INF: Autofocus start
17-03-18 02:34:59.124 -07 000000512 INF: MeasureProfile start
17-03-18 02:34:59.134 -07 000000512 INF: MeasureProfile done
17-03-18 02:34:59.134 -07 000000512 INF: X=-32  Z correction [um]=-0.1591732
17-03-18 02:34:59.134 -07 000000512 INF: Autofocus finished
17-03-18 02:34:59.314 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:34:59.314 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:34:59.314 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139615261072843. ----------
17-03-18 02:34:59.314 -07 000000610 INF: Cycle	101	Tile	1	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:34:59.324 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28975, sync = True, waitForSettling = True)
17-03-18 02:34:59.324 -07 000000610 INF: Z Motor: Moving to -0.132639 mm, started at -0.139615 mm, distance = 6.98 um
17-03-18 02:34:59.324 -07 000000610 INF: FPGA: Xmit ZDACW 28975\n [Z Motor]
17-03-18 02:34:59.324 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:34:59.334 -07 000000610 INF: FPGA: 'ZDACW 28975' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.334 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:34:59.334 -07 000000618 INF: FPGA: Recv ZDACR 28975
17-03-18 02:34:59.344 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:34:59.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.494 -07 000000430 INF: FPGA: Recv ZSGSRD 29932
17-03-18 02:34:59.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:34:59.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.504 -07 000000467 INF: FPGA: Recv ZSGSRD 29936
17-03-18 02:34:59.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.514 -07 000000462 INF: FPGA: Recv ZSGSRD 29944
17-03-18 02:34:59.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.524 -07 000000455 INF: FPGA: Recv ZSGSRD 29948
17-03-18 02:34:59.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.534 -07 000000424 INF: FPGA: Recv ZSGSRD 29938
17-03-18 02:34:59.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.544 -07 000000430 INF: FPGA: Recv ZSGSRD 29935
17-03-18 02:34:59.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.554 -07 000000467 INF: FPGA: Recv ZSGSRD 29953
17-03-18 02:34:59.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.564 -07 000000561 INF: FPGA: Recv ZSGSRD 29941
17-03-18 02:34:59.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.574 -07 000000444 INF: FPGA: Recv ZSGSRD 29939
17-03-18 02:34:59.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:34:59.584 -07 000000618 INF: FPGA: Recv ZSGSRD 29938
17-03-18 02:34:59.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:34:59.594 -07 000000569 INF: FPGA: Recv ZPIEZORD 25339
17-03-18 02:34:59.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:34:59.604 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -10.1 V.
17-03-18 02:34:59.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29940 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29938 (-131.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29932 (-131.8 uncal um), Max = 29953 (-132.0 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:34:59.604 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29940, posNoise = 13, negNoise = 8
17-03-18 02:34:59.604 -07 000000610 INF: Z Motor: After move to -0.132639, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:34:59.604 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:34:59.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:34:59.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:34:59.604 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:34:59.604 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:34:59.604 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:34:59.604 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:34:59.604 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:34:59.604 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:34:59.604 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:34:59.604 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:34:59.604 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:34:59.604 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:34:59.614 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:34:59.614 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:34:59.624 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:34:59.624 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:34:59.624 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 02:34:59.624 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:34:59.634 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:34:59.634 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:34:59.644 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:34:59.644 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 37 ms.
17-03-18 02:34:59.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29151 150\n [Camera]
17-03-18 02:34:59.844 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:00.244 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:00.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:00.244 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:00.244 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:00.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:00.244 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:00.244 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:00.254 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:00.254 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:00.254 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:35:00.434 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29151 781
17-03-18 02:35:00.584 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:00.644 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:35:00.644 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:35:00.644 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:00.644 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:00.644 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:35:00.644 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:35:00.644 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:35:00.644 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:00.644 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:00.654 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:35:00.774 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:00.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:00.774 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:00.784 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:00.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:00.784 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:00.784 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:00.784 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:00.894 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:00.894 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:35:00.964 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:35:00.964 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:00.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29151 150' command took 2 ms to send, 1319 ms to get response, and 1322 ms overall
17-03-18 02:35:00.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:00.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.132664263535458. ------
17-03-18 02:35:00.974 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:00.974 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13893 mm
17-03-18 02:35:00.974 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:00.974 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:35:00.974 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 02:35:00.974 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30349, sync = True, waitForSettling = False)
17-03-18 02:35:00.974 -07 000000444 INF: Z Motor: Moving to -0.138929 mm, started at -0.132664 mm, distance = -6.26 um
17-03-18 02:35:00.974 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:00.984 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:35:00.984 -07 000000444 INF: FPGA: Xmit ZDACW 30349\n [Z Motor]
17-03-18 02:35:00.984 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:35:00.994 -07 000000444 INF: FPGA: 'ZDACW 30349' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:35:00.994 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:00.994 -07 000000590 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:35:01.004 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:01.004 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:35:01.004 -07 000000626 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:01.004 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:01.004 -07 000000626 INF: Y Motor: Moving 1331 steps2
17-03-18 02:35:01.014 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:01.014 -07 000000569 INF: FPGA: Recv ZDACR 30349
17-03-18 02:35:01.024 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:01.024 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:35:01.024 -07 000000444 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:35:01.164 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:35:01.164 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:35:01.164 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:01.164 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:35:01.174 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:35:01.204 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:01.204 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 02:35:01.284 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:35:01.284 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:35:01.284 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:01.284 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:01.284 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 02:35:01.394 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:35:01.394 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:35:01.434 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:01.434 -07 000000569 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:35:01.444 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:35:01.444 -07 000000626 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:01.444 -07 000000626 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:35:01.444 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.832 mm, average velocity = 2.101 mm/sec
17-03-18 02:35:01.494 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:01.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:01.524 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.009895,
17-03-18 02:35:02.394 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:02.394 -07 000000561 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:35:02.404 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:02.404 -07 000000626 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:02.434 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:02.434 -07 000000626 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:02.434 -07 000000626 INF: Y Motor: Moved to 60.7324 after 1453 ms (table move)
17-03-18 02:35:02.434 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138929 mm (DAC = 30349)
17-03-18 02:35:02.434 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.434 -07 000000462 INF: FPGA: Recv ZSGSRD 30917
17-03-18 02:35:02.444 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:35:02.444 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.444 -07 000000461 INF: FPGA: Recv ZSGSRD 30923
17-03-18 02:35:02.454 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.454 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.454 -07 000000606 INF: FPGA: Recv ZSGSRD 30921
17-03-18 02:35:02.464 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.464 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.464 -07 000000591 INF: FPGA: Recv ZSGSRD 30920
17-03-18 02:35:02.474 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.474 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.474 -07 000000569 INF: FPGA: Recv ZSGSRD 30912
17-03-18 02:35:02.484 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.484 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.484 -07 000000502 INF: FPGA: Recv ZSGSRD 30910
17-03-18 02:35:02.494 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.494 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.494 -07 000000461 INF: FPGA: Recv ZSGSRD 30910
17-03-18 02:35:02.504 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.504 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.504 -07 000000606 INF: FPGA: Recv ZSGSRD 30912
17-03-18 02:35:02.514 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.514 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.514 -07 000000626 INF: FPGA: Recv ZSGSRD 30920
17-03-18 02:35:02.524 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.524 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:02.524 -07 000000569 INF: FPGA: Recv ZSGSRD 30920
17-03-18 02:35:02.534 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.534 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:02.534 -07 000000462 INF: FPGA: Recv ZPIEZORD 26692
17-03-18 02:35:02.544 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:02.544 -07 000000576 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.3 V.
17-03-18 02:35:02.544 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30916 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30918 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30910 (-138.1 uncal um), Max = 30923 (-138.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:35:02.544 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30916, posNoise = 7, negNoise = 6
17-03-18 02:35:02.544 -07 000000576 INF: Z Motor: After move to -0.138929, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:02.544 -07 000000576 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:35:02.544 -07 000000576 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:02.594 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:35:02.594 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:02.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:02.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:02.594 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:02.594 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:02.594 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:02.594 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:02.594 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:02.594 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:02.604 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:02.604 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:02.614 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:35:02.614 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:35:02.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:02.654 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:02.954 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:02.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:02.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:02.964 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:35:02.994 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:02.994 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:02.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 02:35:03.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 02:35:03.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:03.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:35:03.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:35:03.194 -07 000000590 INF: Autofocus start
17-03-18 02:35:03.194 -07 000000590 INF: MeasureProfile start
17-03-18 02:35:03.194 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:03.194 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:03.204 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:35:03.204 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:03.204 -07 000000590 INF: MeasureProfile done
17-03-18 02:35:03.204 -07 000000590 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:35:03.204 -07 000000590 INF: Autofocus finished
17-03-18 02:35:03.404 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:03.404 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:03.404 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.138934294585817. ----------
17-03-18 02:35:03.404 -07 000000610 INF: Cycle	101	Tile	2	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:03.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28890, sync = True, waitForSettling = True)
17-03-18 02:35:03.414 -07 000000610 INF: Z Motor: Moving to -0.132250 mm, started at -0.138934 mm, distance = 6.68 um
17-03-18 02:35:03.414 -07 000000610 INF: FPGA: Xmit ZDACW 28890\n [Z Motor]
17-03-18 02:35:03.414 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:35:03.424 -07 000000610 INF: FPGA: 'ZDACW 28890' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:03.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:03.424 -07 000000569 INF: FPGA: Recv ZDACR 28890
17-03-18 02:35:03.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:03.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.584 -07 000000430 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:35:03.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:03.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.594 -07 000000606 INF: FPGA: Recv ZSGSRD 29881
17-03-18 02:35:03.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.604 -07 000000629 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:35:03.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.614 -07 000000455 INF: FPGA: Recv ZSGSRD 29883
17-03-18 02:35:03.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.624 -07 000000576 INF: FPGA: Recv ZSGSRD 29870
17-03-18 02:35:03.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.634 -07 000000626 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:35:03.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.644 -07 000000462 INF: FPGA: Recv ZSGSRD 29882
17-03-18 02:35:03.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.654 -07 000000579 INF: FPGA: Recv ZSGSRD 29877
17-03-18 02:35:03.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.664 -07 000000561 INF: FPGA: Recv ZSGSRD 29877
17-03-18 02:35:03.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:03.674 -07 000000512 INF: FPGA: Recv ZSGSRD 29875
17-03-18 02:35:03.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:03.684 -07 000000461 INF: FPGA: Recv ZPIEZORD 25327
17-03-18 02:35:03.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:03.694 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -10.0 V.
17-03-18 02:35:03.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29878 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29878 (-131.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29870 (-131.4 uncal um), Max = 29883 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:35:03.694 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29878, posNoise = 5, negNoise = 8
17-03-18 02:35:03.694 -07 000000610 INF: Z Motor: After move to -0.132250, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:03.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:35:03.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:03.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:03.694 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:03.694 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:03.694 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:03.694 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:03.694 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:03.694 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:03.694 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:35:03.694 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:03.694 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:03.694 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:03.704 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:35:03.704 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:03.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:03.704 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:03.714 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:35:03.714 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:35:03.714 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:35:03.714 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:35:03.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29067 150\n [Camera]
17-03-18 02:35:03.914 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:04.314 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:04.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:04.314 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:04.314 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:04.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:04.314 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:04.324 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:04.324 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:35:04.324 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:04.324 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:35:04.504 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29067 781
17-03-18 02:35:04.654 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:04.714 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:35:04.714 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:35:04.714 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:04.714 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:35:04.714 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:35:04.714 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:04.724 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:04.724 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:35:04.724 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:04.734 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:35:04.844 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:04.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:04.844 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:04.854 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:04.854 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 02:35:04.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:04.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:04.854 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:04.854 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:04.854 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:35:05.034 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:35:05.044 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:05.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29067 150' command took 2 ms to send, 1310 ms to get response, and 1321 ms overall
17-03-18 02:35:05.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:05.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132265962382669. ------
17-03-18 02:35:05.044 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:05.044 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13894 mm
17-03-18 02:35:05.044 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:05.044 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:05.054 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:35:05.054 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:35:05.054 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:35:05.054 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:05.054 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30351, sync = True, waitForSettling = False)
17-03-18 02:35:05.054 -07 000000455 INF: Z Motor: Moving to -0.138938 mm, started at -0.132266 mm, distance = -6.67 um
17-03-18 02:35:05.054 -07 000000424 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:35:05.064 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:05.064 -07 000000576 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:05.064 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:05.064 -07 000000576 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:35:05.064 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:05.074 -07 000000455 INF: FPGA: Xmit ZDACW 30351\n [Z Motor]
17-03-18 02:35:05.074 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:35:05.084 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:05.084 -07 000000455 INF: FPGA: 'ZDACW 30351' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:05.094 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:05.094 -07 000000561 INF: FPGA: Recv ZDACR 30351
17-03-18 02:35:05.104 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:35:05.104 -07 000000455 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:35:05.254 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:35:05.254 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:35:05.254 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:35:05.254 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:05.254 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:35:05.254 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:05.264 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:05.264 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:05.264 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:35:05.264 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:05.264 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 02:35:05.264 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:35:05.454 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:35:05.454 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:35:05.504 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:05.504 -07 000000569 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:35:05.514 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:35:05.514 -07 000000576 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:05.514 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:35:05.514 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 02:35:06.464 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:06.464 -07 000000626 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:35:06.474 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:06.474 -07 000000576 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:06.494 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:06.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:06.504 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:06.504 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:06.504 -07 000000576 INF: Y Motor: Moved to 61.5630 after 1450 ms (table move)
17-03-18 02:35:06.504 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138938 mm (DAC = 30351)
17-03-18 02:35:06.504 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.504 -07 000000606 INF: FPGA: Recv ZSGSRD 30929
17-03-18 02:35:06.514 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:35:06.514 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.514 -07 000000561 INF: FPGA: Recv ZSGSRD 30915
17-03-18 02:35:06.524 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:06.524 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.524 -07 000000626 INF: FPGA: Recv ZSGSRD 30916
17-03-18 02:35:06.534 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:06.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.534 -07 000000591 INF: FPGA: Recv ZSGSRD 30916
17-03-18 02:35:06.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:06.544 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.544 -07 000000430 INF: FPGA: Recv ZSGSRD 30921
17-03-18 02:35:06.554 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:06.554 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.554 -07 000000576 INF: FPGA: Recv ZSGSRD 30921
17-03-18 02:35:06.564 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:06.574 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.574 -07 000000455 INF: FPGA: Recv ZSGSRD 30918
17-03-18 02:35:06.584 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:35:06.594 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.594 -07 000000629 INF: FPGA: Recv ZSGSRD 30919
17-03-18 02:35:06.604 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:35:06.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.604 -07 000000444 INF: FPGA: Recv ZSGSRD 30923
17-03-18 02:35:06.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:06.624 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:06.624 -07 000000629 INF: FPGA: Recv ZSGSRD 30917
17-03-18 02:35:06.634 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:35:06.634 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:06.634 -07 000000444 INF: FPGA: Recv ZPIEZORD 26699
17-03-18 02:35:06.644 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:06.644 -07 000000512 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.631 V. Piezo Error = -9.3 V.
17-03-18 02:35:06.644 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30920 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30918 (-138.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30915 (-138.1 uncal um), Max = 30929 (-138.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:35:06.644 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30920, posNoise = 9, negNoise = 5
17-03-18 02:35:06.644 -07 000000512 INF: Z Motor: After move to -0.138938, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:06.644 -07 000000512 INF: Z Motor: Settle wait time = 1453 ms, measure time = 137 ms (allowed 150 ms), total time = 1590 ms
17-03-18 02:35:06.644 -07 000000512 INF: Z Motor: Waiting extra 13 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:06.664 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:35:06.664 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:06.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:06.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:06.664 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:06.664 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:06.664 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:06.664 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:06.664 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:35:06.664 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:06.674 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:06.674 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:06.684 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:35:06.684 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:35:06.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:06.724 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:06.904 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.031682,
17-03-18 02:35:07.024 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:07.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:07.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:07.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) start.
17-03-18 02:35:07.064 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:07.064 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:07.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 02:35:07.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1099155104, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:35:07.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:07.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:35:07.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:35:07.264 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:07.264 -07 000000606 INF: Autofocus start
17-03-18 02:35:07.264 -07 000000606 INF: MeasureProfile start
17-03-18 02:35:07.264 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:07.274 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:35:07.274 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:07.274 -07 000000606 INF: MeasureProfile done
17-03-18 02:35:07.284 -07 000000606 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:35:07.284 -07 000000606 INF: Autofocus finished
17-03-18 02:35:07.474 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:07.474 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:07.474 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.138959991434384. ----------
17-03-18 02:35:07.484 -07 000000610 INF: Cycle	101	Tile	3	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:07.484 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28875, sync = True, waitForSettling = True)
17-03-18 02:35:07.484 -07 000000610 INF: Z Motor: Moving to -0.132181 mm, started at -0.138960 mm, distance = 6.78 um
17-03-18 02:35:07.484 -07 000000610 INF: FPGA: Xmit ZDACW 28875\n [Z Motor]
17-03-18 02:35:07.484 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:35:07.494 -07 000000610 INF: FPGA: 'ZDACW 28875' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:07.494 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:07.494 -07 000000590 INF: FPGA: Recv ZDACR 28875
17-03-18 02:35:07.504 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.504 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:07.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.654 -07 000000455 INF: FPGA: Recv ZSGSRD 29859
17-03-18 02:35:07.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.664 -07 000000424 INF: FPGA: Recv ZSGSRD 29867
17-03-18 02:35:07.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.674 -07 000000629 INF: FPGA: Recv ZSGSRD 29867
17-03-18 02:35:07.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.684 -07 000000561 INF: FPGA: Recv ZSGSRD 29871
17-03-18 02:35:07.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.694 -07 000000512 INF: FPGA: Recv ZSGSRD 29869
17-03-18 02:35:07.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.704 -07 000000455 INF: FPGA: Recv ZSGSRD 29864
17-03-18 02:35:07.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.714 -07 000000569 INF: FPGA: Recv ZSGSRD 29873
17-03-18 02:35:07.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.724 -07 000000591 INF: FPGA: Recv ZSGSRD 29869
17-03-18 02:35:07.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.734 -07 000000576 INF: FPGA: Recv ZSGSRD 29865
17-03-18 02:35:07.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:07.744 -07 000000502 INF: FPGA: Recv ZSGSRD 29866
17-03-18 02:35:07.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:07.754 -07 000000462 INF: FPGA: Recv ZPIEZORD 25328
17-03-18 02:35:07.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:07.764 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -10.0 V.
17-03-18 02:35:07.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29867 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29867 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29859 (-131.4 uncal um), Max = 29873 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:35:07.764 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29867, posNoise = 6, negNoise = 8
17-03-18 02:35:07.764 -07 000000610 INF: Z Motor: After move to -0.132181, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:07.764 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:35:07.764 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:07.764 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:07.764 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:07.764 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:07.764 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:07.764 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:07.764 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:07.764 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:07.764 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:35:07.764 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:07.764 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:35:07.764 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:07.774 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:07.774 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:07.774 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:35:07.774 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:07.774 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:35:07.774 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:35:07.784 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:35:07.784 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:35:07.784 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 29052 150\n [Camera]
17-03-18 02:35:07.984 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:08.374 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:08.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:08.384 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:08.384 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:08.384 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:35:08.384 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:08.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:08.384 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:08.384 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:08.384 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:35:08.574 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29052 781
17-03-18 02:35:08.724 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:08.754 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:35:08.754 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:35:08.754 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:08.764 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:35:08.764 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:35:08.764 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:08.764 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:35:08.764 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:35:08.764 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:08.774 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:35:08.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:08.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:08.914 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:08.914 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:08.914 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:35:08.914 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:08.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:08.914 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:08.914 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:08.914 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:35:09.104 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:35:09.104 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:09.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 29052 150' command took 2 ms to send, 1314 ms to get response, and 1320 ms overall
17-03-18 02:35:09.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:09.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.13219529604911. ------
17-03-18 02:35:09.104 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:09.104 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13863 mm
17-03-18 02:35:09.104 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:09.114 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:09.114 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 02:35:09.114 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:35:09.114 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 02:35:09.114 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 30284, sync = True, waitForSettling = False)
17-03-18 02:35:09.114 -07 000000430 INF: Z Motor: Moving to -0.138631 mm, started at -0.132195 mm, distance = -6.44 um
17-03-18 02:35:09.114 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:09.124 -07 000000430 INF: FPGA: Xmit ZDACW 30284\n [Z Motor]
17-03-18 02:35:09.124 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:35:09.134 -07 000000430 INF: FPGA: 'ZDACW 30284' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:35:09.134 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:09.134 -07 000000618 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:35:09.144 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:35:09.144 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:09.144 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:09.144 -07 000000576 INF: FPGA: Recv ZDACR 30284
17-03-18 02:35:09.144 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:09.144 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:35:09.154 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:35:09.154 -07 000000430 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:35:09.154 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:09.304 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:35:09.304 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:35:09.304 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:09.304 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:35:09.304 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:35:09.304 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:09.314 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:09.314 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:35:09.314 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:35:09.314 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:09.314 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 204 ms overall
17-03-18 02:35:09.314 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:35:09.534 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:35:09.534 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 387 ms overall
17-03-18 02:35:09.574 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:09.574 -07 000000430 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:35:09.584 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:35:09.584 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:09.584 -07 000000512 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:35:09.584 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.840 mm, average velocity = 2.170 mm/sec
17-03-18 02:35:10.534 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:10.534 -07 000000590 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:35:10.544 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:10.544 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:10.564 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:10.564 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:10.564 -07 000000512 INF: Y Motor: Moved to 62.3950 after 1455 ms (table move)
17-03-18 02:35:10.574 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138631 mm (DAC = 30284)
17-03-18 02:35:10.574 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.574 -07 000000626 INF: FPGA: Recv ZSGSRD 30872
17-03-18 02:35:10.584 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:10.584 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.584 -07 000000501 INF: FPGA: Recv ZSGSRD 30865
17-03-18 02:35:10.594 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.594 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.594 -07 000000467 INF: FPGA: Recv ZSGSRD 30870
17-03-18 02:35:10.604 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.604 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.604 -07 000000561 INF: FPGA: Recv ZSGSRD 30869
17-03-18 02:35:10.614 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.614 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.614 -07 000000424 INF: FPGA: Recv ZSGSRD 30873
17-03-18 02:35:10.624 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.624 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.624 -07 000000606 INF: FPGA: Recv ZSGSRD 30877
17-03-18 02:35:10.634 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.634 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.634 -07 000000590 INF: FPGA: Recv ZSGSRD 30879
17-03-18 02:35:10.644 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.644 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.644 -07 000000618 INF: FPGA: Recv ZSGSRD 30867
17-03-18 02:35:10.654 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.654 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.654 -07 000000561 INF: FPGA: Recv ZSGSRD 30866
17-03-18 02:35:10.664 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.664 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:10.664 -07 000000512 INF: FPGA: Recv ZSGSRD 30867
17-03-18 02:35:10.674 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.674 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:10.674 -07 000000606 INF: FPGA: Recv ZPIEZORD 26703
17-03-18 02:35:10.684 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:10.684 -07 000000569 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -9.2 V.
17-03-18 02:35:10.684 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30870 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30870 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30865 (-137.8 uncal um), Max = 30879 (-137.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:35:10.684 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30870, posNoise = 9, negNoise = 5
17-03-18 02:35:10.684 -07 000000569 INF: Z Motor: After move to -0.138631, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:10.684 -07 000000569 INF: Z Motor: Settle wait time = 1458 ms, measure time = 110 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:35:10.684 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:10.724 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:35:10.724 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:10.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:10.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:10.724 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:10.724 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:10.724 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:10.724 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:10.724 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:35:10.724 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:10.724 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:10.724 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:10.734 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:35:10.734 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:35:10.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:10.784 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:11.084 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:11.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:11.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:11.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 02:35:11.124 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:11.124 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:11.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:35:11.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:35:11.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:11.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:35:11.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:35:11.224 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:11.224 -07 000000569 INF: Autofocus start
17-03-18 02:35:11.224 -07 000000569 INF: MeasureProfile start
17-03-18 02:35:11.224 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:11.234 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:11.234 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:11.234 -07 000000569 INF: MeasureProfile done
17-03-18 02:35:11.234 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:35:11.234 -07 000000569 INF: Autofocus finished
17-03-18 02:35:11.434 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:11.434 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:11.434 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.138638780827296. ----------
17-03-18 02:35:11.444 -07 000000610 INF: Cycle	101	Tile	4	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:11.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28792, sync = True, waitForSettling = True)
17-03-18 02:35:11.444 -07 000000610 INF: Z Motor: Moving to -0.131801 mm, started at -0.138639 mm, distance = 6.84 um
17-03-18 02:35:11.444 -07 000000610 INF: FPGA: Xmit ZDACW 28792\n [Z Motor]
17-03-18 02:35:11.444 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:35:11.454 -07 000000610 INF: FPGA: 'ZDACW 28792' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:11.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:11.454 -07 000000512 INF: FPGA: Recv ZDACR 28792
17-03-18 02:35:11.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:11.494 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:11.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:11.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.614 -07 000000512 INF: FPGA: Recv ZSGSRD 29806
17-03-18 02:35:11.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.624 -07 000000569 INF: FPGA: Recv ZSGSRD 29812
17-03-18 02:35:11.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.634 -07 000000576 INF: FPGA: Recv ZSGSRD 29809
17-03-18 02:35:11.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.644 -07 000000590 INF: FPGA: Recv ZSGSRD 29805
17-03-18 02:35:11.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.654 -07 000000618 INF: FPGA: Recv ZSGSRD 29799
17-03-18 02:35:11.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.664 -07 000000629 INF: FPGA: Recv ZSGSRD 29809
17-03-18 02:35:11.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.684 -07 000000461 INF: FPGA: Recv ZSGSRD 29810
17-03-18 02:35:11.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:35:11.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.694 -07 000000455 INF: FPGA: Recv ZSGSRD 29809
17-03-18 02:35:11.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.704 -07 000000626 INF: FPGA: Recv ZSGSRD 29810
17-03-18 02:35:11.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:11.714 -07 000000501 INF: FPGA: Recv ZSGSRD 29810
17-03-18 02:35:11.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:11.724 -07 000000462 INF: FPGA: Recv ZPIEZORD 25309
17-03-18 02:35:11.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:11.734 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.9 V.
17-03-18 02:35:11.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29808 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29809 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29799 (-131.0 uncal um), Max = 29812 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:35:11.734 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29808, posNoise = 4, negNoise = 9
17-03-18 02:35:11.734 -07 000000610 INF: Z Motor: After move to -0.131801, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:11.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 02:35:11.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:11.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:11.734 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:11.734 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:11.734 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:11.734 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:11.734 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:35:11.734 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:11.734 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:11.734 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:11.734 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:11.734 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:11.744 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:11.744 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:11.744 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 02:35:11.744 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:11.754 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:35:11.754 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:35:11.754 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:35:11.754 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:35:11.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28969 150\n [Camera]
17-03-18 02:35:11.954 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:12.304 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.019446,
17-03-18 02:35:12.344 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:12.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:12.354 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:12.354 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:12.354 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:35:12.354 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:12.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:12.354 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:12.354 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:12.354 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:35:12.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28969 781
17-03-18 02:35:12.694 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:12.744 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:35:12.744 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:35:12.744 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:12.754 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:35:12.754 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:35:12.754 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:12.754 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:12.754 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:35:12.754 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:12.764 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:35:12.884 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:12.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:12.884 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:12.884 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:12.884 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:35:12.884 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:12.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:12.884 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:12.884 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:12.884 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:35:13.074 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:35:13.074 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:13.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28969 150' command took 2 ms to send, 1313 ms to get response, and 1321 ms overall
17-03-18 02:35:13.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:13.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.131816267532746. ------
17-03-18 02:35:13.074 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:13.074 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13850 mm
17-03-18 02:35:13.074 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:13.084 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:35:13.084 -07 000000576 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:35:13.084 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:13.084 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:13.084 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:35:13.084 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30255, sync = True, waitForSettling = False)
17-03-18 02:35:13.084 -07 000000424 INF: Z Motor: Moving to -0.138499 mm, started at -0.131816 mm, distance = -6.68 um
17-03-18 02:35:13.084 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:35:13.094 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:13.094 -07 000000576 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:13.094 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:13.094 -07 000000576 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:13.094 -07 000000576 INF: Y Motor: Moving 1339 steps-16
17-03-18 02:35:13.104 -07 000000424 INF: FPGA: Xmit ZDACW 30255\n [Z Motor]
17-03-18 02:35:13.104 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:35:13.114 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:13.114 -07 000000424 INF: FPGA: 'ZDACW 30255' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:35:13.124 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:13.124 -07 000000626 INF: FPGA: Recv ZDACR 30255
17-03-18 02:35:13.134 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:35:13.134 -07 000000424 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:35:13.284 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:35:13.284 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:35:13.284 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:13.284 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:35:13.284 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:35:13.284 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:13.294 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:13.294 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 02:35:13.294 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:13.294 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:35:13.294 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:35:13.304 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:35:13.484 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:35:13.484 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:35:13.534 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:13.534 -07 000000424 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:35:13.544 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:35:13.544 -07 000000576 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:13.544 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:35:13.544 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.126 mm/sec
17-03-18 02:35:14.494 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:14.494 -07 000000501 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:35:14.504 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:14.504 -07 000000576 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:14.524 -07 000000576 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:14.524 -07 000000576 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:35:14.524 -07 000000576 INF: Y Motor: Moved to 63.2236 after 1447 ms (table move)
17-03-18 02:35:14.534 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138499 mm (DAC = 30255)
17-03-18 02:35:14.534 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.534 -07 000000606 INF: FPGA: Recv ZSGSRD 30850
17-03-18 02:35:14.544 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:14.544 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.544 -07 000000629 INF: FPGA: Recv ZSGSRD 30850
17-03-18 02:35:14.554 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.554 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.554 -07 000000590 INF: FPGA: Recv ZSGSRD 30856
17-03-18 02:35:14.564 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.564 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.564 -07 000000618 INF: FPGA: Recv ZSGSRD 30853
17-03-18 02:35:14.574 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.574 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.574 -07 000000461 INF: FPGA: Recv ZSGSRD 30850
17-03-18 02:35:14.584 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.584 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.584 -07 000000606 INF: FPGA: Recv ZSGSRD 30847
17-03-18 02:35:14.594 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.594 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.594 -07 000000455 INF: FPGA: Recv ZSGSRD 30853
17-03-18 02:35:14.604 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.604 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.604 -07 000000502 INF: FPGA: Recv ZSGSRD 30842
17-03-18 02:35:14.614 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.614 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.614 -07 000000618 INF: FPGA: Recv ZSGSRD 30848
17-03-18 02:35:14.624 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.624 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:14.624 -07 000000455 INF: FPGA: Recv ZSGSRD 30854
17-03-18 02:35:14.634 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.634 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:14.634 -07 000000561 INF: FPGA: Recv ZPIEZORD 26704
17-03-18 02:35:14.644 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:14.644 -07 000000444 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.1 V.
17-03-18 02:35:14.644 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30850 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30850 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30842 (-137.7 uncal um), Max = 30856 (-137.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:35:14.644 -07 000000444 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30850, posNoise = 6, negNoise = 8
17-03-18 02:35:14.644 -07 000000444 INF: Z Motor: After move to -0.138499, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:14.644 -07 000000444 INF: Z Motor: Settle wait time = 1449 ms, measure time = 109 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:35:14.644 -07 000000444 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:14.694 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:35:14.694 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:14.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:14.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:14.694 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:14.694 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:14.694 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:14.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:14.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:35:14.694 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:14.704 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:14.704 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:14.714 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:35:14.714 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:35:14.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:14.764 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:15.064 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:15.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:15.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:15.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 02:35:15.104 -07 000000430 INF: FPGA: Recv @CAMSNAP 382
17-03-18 02:35:15.104 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:15.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 382 ms to get response, and 387 ms overall
17-03-18 02:35:15.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:35:15.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:15.194 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:35:15.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:35:15.204 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:15.204 -07 000000512 INF: Autofocus start
17-03-18 02:35:15.204 -07 000000512 INF: MeasureProfile start
17-03-18 02:35:15.204 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:15.214 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:15.214 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:15.214 -07 000000512 INF: MeasureProfile done
17-03-18 02:35:15.214 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:35:15.214 -07 000000512 INF: Autofocus finished
17-03-18 02:35:15.414 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:15.414 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:15.414 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.138510296584461. ----------
17-03-18 02:35:15.414 -07 000000610 INF: Cycle	101	Tile	5	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:15.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28763, sync = True, waitForSettling = True)
17-03-18 02:35:15.424 -07 000000610 INF: Z Motor: Moving to -0.131669 mm, started at -0.138510 mm, distance = 6.84 um
17-03-18 02:35:15.424 -07 000000610 INF: FPGA: Xmit ZDACW 28763\n [Z Motor]
17-03-18 02:35:15.424 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:35:15.434 -07 000000610 INF: FPGA: 'ZDACW 28763' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.434 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:15.434 -07 000000430 INF: FPGA: Recv ZDACR 28763
17-03-18 02:35:15.444 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.444 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:15.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.594 -07 000000512 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:35:15.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.604 -07 000000444 INF: FPGA: Recv ZSGSRD 29789
17-03-18 02:35:15.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.614 -07 000000461 INF: FPGA: Recv ZSGSRD 29785
17-03-18 02:35:15.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.624 -07 000000424 INF: FPGA: Recv ZSGSRD 29783
17-03-18 02:35:15.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.634 -07 000000626 INF: FPGA: Recv ZSGSRD 29791
17-03-18 02:35:15.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:15.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.644 -07 000000576 INF: FPGA: Recv ZSGSRD 29786
17-03-18 02:35:15.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.654 -07 000000512 INF: FPGA: Recv ZSGSRD 29785
17-03-18 02:35:15.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.664 -07 000000430 INF: FPGA: Recv ZSGSRD 29782
17-03-18 02:35:15.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.674 -07 000000618 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:35:15.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:15.684 -07 000000501 INF: FPGA: Recv ZSGSRD 29787
17-03-18 02:35:15.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:15.694 -07 000000455 INF: FPGA: Recv ZPIEZORD 25281
17-03-18 02:35:15.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:15.704 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.9 V.
17-03-18 02:35:15.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29787 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29786 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29782 (-130.9 uncal um), Max = 29791 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:35:15.704 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29787, posNoise = 4, negNoise = 5
17-03-18 02:35:15.704 -07 000000610 INF: Z Motor: After move to -0.131669, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:15.704 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:35:15.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:15.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:15.704 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:15.704 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:15.704 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:15.704 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:15.704 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:15.704 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:15.704 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:35:15.704 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:15.704 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:35:15.704 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:15.714 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:35:15.714 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:15.714 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:35:15.714 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:15.724 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:35:15.724 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:35:15.724 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:35:15.724 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:35:15.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28939 150\n [Camera]
17-03-18 02:35:15.924 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:16.324 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:16.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:16.324 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:16.324 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:16.324 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 02:35:16.324 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:16.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:16.324 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:16.324 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:16.324 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:35:16.494 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:16.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:16.514 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28939 781
17-03-18 02:35:16.664 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:16.704 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:35:16.704 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:35:16.704 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:35:16.714 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:16.714 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:35:16.714 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:16.714 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:35:16.714 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:35:16.714 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:35:16.724 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:35:16.854 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:16.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:16.854 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:16.854 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:16.854 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 02:35:16.854 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:16.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:16.854 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:16.854 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:16.854 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 02:35:17.044 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:35:17.044 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:17.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28939 150' command took 2 ms to send, 1315 ms to get response, and 1321 ms overall
17-03-18 02:35:17.044 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:17.044 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.131681359077769. ------
17-03-18 02:35:17.054 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:17.054 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13781 mm
17-03-18 02:35:17.054 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:17.054 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:17.054 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30106, sync = True, waitForSettling = False)
17-03-18 02:35:17.054 -07 000000501 INF: Z Motor: Moving to -0.137816 mm, started at -0.131681 mm, distance = -6.14 um
17-03-18 02:35:17.054 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:35:17.054 -07 000000467 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 02:35:17.064 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:17.064 -07 000000501 INF: FPGA: Xmit ZDACW 30106\n [Z Motor]
17-03-18 02:35:17.064 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:35:17.074 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:17.074 -07 000000501 INF: FPGA: 'ZDACW 30106' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:35:17.074 -07 000000561 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:35:17.084 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:17.084 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:35:17.084 -07 000000467 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:17.084 -07 000000467 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:17.084 -07 000000467 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:35:17.094 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:17.094 -07 000000561 INF: FPGA: Recv ZDACR 30106
17-03-18 02:35:17.104 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:17.104 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:17.104 -07 000000501 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:35:17.244 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:35:17.244 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:35:17.244 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:17.244 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:35:17.244 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:35:17.244 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:17.254 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:17.254 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:35:17.254 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:35:17.254 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:35:17.284 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:17.284 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:35:17.474 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:35:17.474 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:35:17.524 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:17.524 -07 000000561 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:35:17.534 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:17.534 -07 000000467 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:17.534 -07 000000467 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 02:35:17.534 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 02:35:17.674 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.011254,
17-03-18 02:35:18.484 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:18.484 -07 000000430 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:35:18.494 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:18.494 -07 000000467 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:18.514 -07 000000467 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:18.514 -07 000000467 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:18.514 -07 000000467 INF: Y Motor: Moved to 64.0566 after 1461 ms (table move)
17-03-18 02:35:18.524 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137816 mm (DAC = 30106)
17-03-18 02:35:18.524 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.524 -07 000000501 INF: FPGA: Recv ZSGSRD 30732
17-03-18 02:35:18.534 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.534 -07 000000629 INF: FPGA: Recv ZSGSRD 30744
17-03-18 02:35:18.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.544 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.544 -07 000000618 INF: FPGA: Recv ZSGSRD 30750
17-03-18 02:35:18.554 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.554 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.554 -07 000000461 INF: FPGA: Recv ZSGSRD 30749
17-03-18 02:35:18.564 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.564 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.564 -07 000000467 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:35:18.574 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.574 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.574 -07 000000501 INF: FPGA: Recv ZSGSRD 30734
17-03-18 02:35:18.584 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.584 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.584 -07 000000629 INF: FPGA: Recv ZSGSRD 30744
17-03-18 02:35:18.594 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.594 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.594 -07 000000618 INF: FPGA: Recv ZSGSRD 30746
17-03-18 02:35:18.604 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.604 -07 000000461 INF: FPGA: Recv ZSGSRD 30736
17-03-18 02:35:18.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.614 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:18.614 -07 000000591 INF: FPGA: Recv ZSGSRD 30750
17-03-18 02:35:18.624 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.624 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:18.624 -07 000000561 INF: FPGA: Recv ZPIEZORD 26568
17-03-18 02:35:18.634 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:18.634 -07 000000512 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -9.2 V.
17-03-18 02:35:18.634 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30743 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30745 (-137.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30732 (-137.0 uncal um), Max = 30750 (-137.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:35:18.634 -07 000000512 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30743, posNoise = 7, negNoise = 11
17-03-18 02:35:18.634 -07 000000512 INF: Z Motor: After move to -0.137816, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:18.634 -07 000000512 INF: Z Motor: Settle wait time = 1466 ms, measure time = 110 ms (allowed 150 ms), total time = 1576 ms
17-03-18 02:35:18.634 -07 000000512 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:18.674 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:35:18.674 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:18.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:18.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:18.674 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:18.674 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:18.674 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:18.674 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:18.674 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:18.674 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:18.684 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:18.684 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:18.684 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:35:18.684 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:35:18.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:18.734 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:19.034 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:19.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:19.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:19.034 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-18 02:35:19.074 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:19.074 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:19.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:35:19.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:35:19.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:19.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:35:19.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:35:19.174 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:19.174 -07 000000590 INF: Autofocus start
17-03-18 02:35:19.174 -07 000000590 INF: MeasureProfile start
17-03-18 02:35:19.174 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:19.184 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:19.184 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:19.184 -07 000000590 INF: MeasureProfile done
17-03-18 02:35:19.184 -07 000000590 INF: X=96  Z correction [um]=0.437849
17-03-18 02:35:19.184 -07 000000590 INF: Autofocus finished
17-03-18 02:35:19.384 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:19.384 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:19.384 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.137822905885292. ----------
17-03-18 02:35:19.384 -07 000000610 INF: Cycle	101	Tile	6	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:19.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28714, sync = True, waitForSettling = True)
17-03-18 02:35:19.394 -07 000000610 INF: Z Motor: Moving to -0.131444 mm, started at -0.137823 mm, distance = 6.38 um
17-03-18 02:35:19.394 -07 000000610 INF: FPGA: Xmit ZDACW 28714\n [Z Motor]
17-03-18 02:35:19.394 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:35:19.404 -07 000000610 INF: FPGA: 'ZDACW 28714' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:19.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:19.404 -07 000000502 INF: FPGA: Recv ZDACR 28714
17-03-18 02:35:19.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:19.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.564 -07 000000618 INF: FPGA: Recv ZSGSRD 29748
17-03-18 02:35:19.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.574 -07 000000455 INF: FPGA: Recv ZSGSRD 29749
17-03-18 02:35:19.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.584 -07 000000591 INF: FPGA: Recv ZSGSRD 29751
17-03-18 02:35:19.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.594 -07 000000561 INF: FPGA: Recv ZSGSRD 29748
17-03-18 02:35:19.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.604 -07 000000606 INF: FPGA: Recv ZSGSRD 29754
17-03-18 02:35:19.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.614 -07 000000629 INF: FPGA: Recv ZSGSRD 29750
17-03-18 02:35:19.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.624 -07 000000455 INF: FPGA: Recv ZSGSRD 29752
17-03-18 02:35:19.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.634 -07 000000512 INF: FPGA: Recv ZSGSRD 29752
17-03-18 02:35:19.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.644 -07 000000561 INF: FPGA: Recv ZSGSRD 29752
17-03-18 02:35:19.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:19.654 -07 000000576 INF: FPGA: Recv ZSGSRD 29754
17-03-18 02:35:19.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:19.664 -07 000000461 INF: FPGA: Recv ZPIEZORD 25269
17-03-18 02:35:19.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:19.674 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.8 V.
17-03-18 02:35:19.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29751 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29752 (-130.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29748 (-130.6 uncal um), Max = 29754 (-130.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:35:19.674 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29751, posNoise = 3, negNoise = 3
17-03-18 02:35:19.674 -07 000000610 INF: Z Motor: After move to -0.131444, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:19.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:35:19.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:19.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:19.674 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:19.674 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:19.674 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:19.674 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:19.674 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:19.674 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:19.674 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:35:19.674 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:19.684 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:35:19.684 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:19.684 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:35:19.684 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:19.684 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:19.684 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:19.694 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:35:19.694 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:35:19.694 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:35:19.694 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:35:19.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28891 150\n [Camera]
17-03-18 02:35:19.904 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 02:35:20.294 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:20.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:20.294 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:20.294 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:20.294 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 02:35:20.304 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:20.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:20.304 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:20.304 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:20.304 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 02:35:20.494 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28891 781
17-03-18 02:35:20.634 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:20.694 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:35:20.694 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:35:20.694 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:20.704 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:35:20.704 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:35:20.704 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:20.704 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:20.704 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:35:20.704 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:20.714 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:35:20.834 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:20.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:20.834 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:20.974 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:20.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:20.974 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:20.974 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:20.974 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 02:35:20.984 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:20.984 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:35:21.024 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:35:21.024 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:21.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28891 150' command took 2 ms to send, 1312 ms to get response, and 1321 ms overall
17-03-18 02:35:21.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:21.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.131450087440665. ------
17-03-18 02:35:21.024 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:21.024 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13795 mm
17-03-18 02:35:21.024 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:21.024 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:35:21.024 -07 000000606 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 02:35:21.024 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30136, sync = True, waitForSettling = False)
17-03-18 02:35:21.024 -07 000000424 INF: Z Motor: Moving to -0.137954 mm, started at -0.131450 mm, distance = -6.50 um
17-03-18 02:35:21.024 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:21.034 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:35:21.034 -07 000000424 INF: FPGA: Xmit ZDACW 30136\n [Z Motor]
17-03-18 02:35:21.034 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:35:21.044 -07 000000424 INF: FPGA: 'ZDACW 30136' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:21.044 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:21.044 -07 000000512 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:35:21.054 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:35:21.054 -07 000000606 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:21.054 -07 000000606 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:21.054 -07 000000606 INF: Y Motor: Moving 1338 steps-12
17-03-18 02:35:21.054 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:21.064 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:21.064 -07 000000569 INF: FPGA: Recv ZDACR 30136
17-03-18 02:35:21.074 -07 000000424 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:21.074 -07 000000424 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 02:35:21.074 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:21.254 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:21.254 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 02:35:21.364 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:35:21.364 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:35:21.364 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:21.364 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:21.374 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:35:21.374 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:35:21.374 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:21.374 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:21.374 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 543 ms.
17-03-18 02:35:21.374 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:35:21.444 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:35:21.444 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:35:21.494 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:21.494 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:21.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:21.494 -07 000000629 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:35:21.504 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:21.504 -07 000000606 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:21.504 -07 000000606 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:35:21.504 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-18 02:35:22.454 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:22.454 -07 000000512 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:35:22.464 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:22.464 -07 000000606 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:22.484 -07 000000606 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:22.484 -07 000000606 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:22.484 -07 000000606 INF: Y Motor: Moved to 64.8784 after 1459 ms (table move)
17-03-18 02:35:22.494 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137954 mm (DAC = 30136)
17-03-18 02:35:22.494 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.494 -07 000000569 INF: FPGA: Recv ZSGSRD 30768
17-03-18 02:35:22.504 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:22.504 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.504 -07 000000502 INF: FPGA: Recv ZSGSRD 30766
17-03-18 02:35:22.514 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.514 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.514 -07 000000618 INF: FPGA: Recv ZSGSRD 30762
17-03-18 02:35:22.524 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.524 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.524 -07 000000444 INF: FPGA: Recv ZSGSRD 30764
17-03-18 02:35:22.534 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.534 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.534 -07 000000561 INF: FPGA: Recv ZSGSRD 30768
17-03-18 02:35:22.544 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.544 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.544 -07 000000569 INF: FPGA: Recv ZSGSRD 30766
17-03-18 02:35:22.554 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.554 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.554 -07 000000424 INF: FPGA: Recv ZSGSRD 30765
17-03-18 02:35:22.564 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.564 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.564 -07 000000579 INF: FPGA: Recv ZSGSRD 30762
17-03-18 02:35:22.574 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.574 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.574 -07 000000467 INF: FPGA: Recv ZSGSRD 30768
17-03-18 02:35:22.584 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.584 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:22.584 -07 000000561 INF: FPGA: Recv ZSGSRD 30774
17-03-18 02:35:22.594 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.594 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:22.594 -07 000000462 INF: FPGA: Recv ZPIEZORD 26604
17-03-18 02:35:22.604 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:22.604 -07 000000576 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -9.2 V.
17-03-18 02:35:22.604 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30766 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30766 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30762 (-137.1 uncal um), Max = 30774 (-137.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:35:22.604 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30766, posNoise = 8, negNoise = 4
17-03-18 02:35:22.604 -07 000000576 INF: Z Motor: After move to -0.137954, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:22.604 -07 000000576 INF: Z Motor: Settle wait time = 1462 ms, measure time = 111 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:35:22.604 -07 000000576 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:22.644 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:35:22.644 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:22.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:22.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:22.644 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:22.644 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:22.654 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:22.654 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:22.654 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:22.654 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:22.654 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:22.654 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:22.664 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:35:22.664 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:35:22.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:22.704 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:23.004 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:23.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:23.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:23.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:23.044 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.031682,
17-03-18 02:35:23.044 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:23.044 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:23.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:35:23.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:35:23.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:23.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:35:23.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:35:23.144 -07 000000576 INF: Autofocus start
17-03-18 02:35:23.144 -07 000000576 INF: MeasureProfile start
17-03-18 02:35:23.144 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:23.144 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:23.154 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:23.154 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:23.154 -07 000000576 INF: MeasureProfile done
17-03-18 02:35:23.154 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:35:23.154 -07 000000576 INF: Autofocus finished
17-03-18 02:35:23.354 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:23.354 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:23.354 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137970662764553. ----------
17-03-18 02:35:23.354 -07 000000610 INF: Cycle	101	Tile	7	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:23.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28643, sync = True, waitForSettling = True)
17-03-18 02:35:23.364 -07 000000610 INF: Z Motor: Moving to -0.131119 mm, started at -0.137971 mm, distance = 6.85 um
17-03-18 02:35:23.364 -07 000000610 INF: FPGA: Xmit ZDACW 28643\n [Z Motor]
17-03-18 02:35:23.364 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:35:23.374 -07 000000610 INF: FPGA: 'ZDACW 28643' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:23.374 -07 000000444 INF: FPGA: Recv ZDACR 28643
17-03-18 02:35:23.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:23.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.534 -07 000000606 INF: FPGA: Recv ZSGSRD 29705
17-03-18 02:35:23.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:23.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.544 -07 000000626 INF: FPGA: Recv ZSGSRD 29699
17-03-18 02:35:23.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.554 -07 000000618 INF: FPGA: Recv ZSGSRD 29710
17-03-18 02:35:23.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.564 -07 000000455 INF: FPGA: Recv ZSGSRD 29697
17-03-18 02:35:23.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.574 -07 000000569 INF: FPGA: Recv ZSGSRD 29705
17-03-18 02:35:23.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.584 -07 000000501 INF: FPGA: Recv ZSGSRD 29697
17-03-18 02:35:23.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.594 -07 000000626 INF: FPGA: Recv ZSGSRD 29701
17-03-18 02:35:23.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.604 -07 000000579 INF: FPGA: Recv ZSGSRD 29701
17-03-18 02:35:23.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.614 -07 000000576 INF: FPGA: Recv ZSGSRD 29700
17-03-18 02:35:23.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:23.624 -07 000000591 INF: FPGA: Recv ZSGSRD 29705
17-03-18 02:35:23.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:23.634 -07 000000501 INF: FPGA: Recv ZPIEZORD 25193
17-03-18 02:35:23.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:23.644 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.9 V.
17-03-18 02:35:23.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29702 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29701 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29697 (-130.3 uncal um), Max = 29710 (-130.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:35:23.644 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29702, posNoise = 8, negNoise = 5
17-03-18 02:35:23.644 -07 000000610 INF: Z Motor: After move to -0.131119, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:23.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:35:23.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:23.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:23.644 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:23.644 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:23.644 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:23.644 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:23.644 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:23.644 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:23.644 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:35:23.644 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:23.644 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:23.644 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:23.654 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:35:23.654 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:23.654 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:23.654 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:23.664 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:35:23.664 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:35:23.664 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:35:23.664 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:35:23.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28820 150\n [Camera]
17-03-18 02:35:23.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:24.264 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:24.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:24.264 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:24.274 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:24.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:24.274 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:24.274 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:24.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:35:24.284 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:24.284 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:35:24.464 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28820 784
17-03-18 02:35:24.604 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:24.674 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:35:24.674 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:35:24.674 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:24.674 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:35:24.674 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:35:24.674 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:24.674 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:24.674 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:35:24.674 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:24.684 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:35:24.804 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:24.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:24.804 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:24.924 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:24.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:24.924 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:24.924 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:24.924 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:24.924 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:24.924 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:24.994 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:35:24.994 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:24.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28820 150' command took 2 ms to send, 1312 ms to get response, and 1321 ms overall
17-03-18 02:35:24.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:24.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131135301045719. ------
17-03-18 02:35:24.994 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:24.994 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13775 mm
17-03-18 02:35:24.994 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:24.994 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:35:24.994 -07 000000430 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:35:25.004 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:25.004 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:25.004 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:35:25.004 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30092, sync = True, waitForSettling = False)
17-03-18 02:35:25.004 -07 000000626 INF: Z Motor: Moving to -0.137752 mm, started at -0.131135 mm, distance = -6.62 um
17-03-18 02:35:25.004 -07 000000618 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:35:25.014 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:25.014 -07 000000626 INF: FPGA: Xmit ZDACW 30092\n [Z Motor]
17-03-18 02:35:25.014 -07 000000430 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:25.014 -07 000000430 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:25.014 -07 000000430 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:35:25.014 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:35:25.024 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:25.024 -07 000000626 INF: FPGA: 'ZDACW 30092' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:35:25.034 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:25.044 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:25.044 -07 000000576 INF: FPGA: Recv ZDACR 30092
17-03-18 02:35:25.054 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:35:25.054 -07 000000626 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:35:25.224 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:25.224 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 194 ms to get response, and 224 ms overall
17-03-18 02:35:25.324 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:35:25.324 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:35:25.324 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:25.324 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:35:25.324 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:35:25.324 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:25.324 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:25.324 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-18 02:35:25.324 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:25.334 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:35:25.404 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:35:25.404 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:35:25.454 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:25.454 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:35:25.464 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:25.464 -07 000000430 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:25.464 -07 000000430 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:35:25.464 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 02:35:26.414 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:26.414 -07 000000462 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:35:26.424 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:26.424 -07 000000430 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:26.454 -07 000000430 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:26.454 -07 000000430 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:26.454 -07 000000430 INF: Y Motor: Moved to 65.7134 after 1453 ms (table move)
17-03-18 02:35:26.454 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137752 mm (DAC = 30092)
17-03-18 02:35:26.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.464 -07 000000512 INF: FPGA: Recv ZSGSRD 30737
17-03-18 02:35:26.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 02:35:26.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.464 -07 000000462 INF: FPGA: Recv ZSGSRD 30735
17-03-18 02:35:26.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:26.474 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.474 -07 000000576 INF: FPGA: Recv ZSGSRD 30733
17-03-18 02:35:26.484 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:26.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.484 -07 000000569 INF: FPGA: Recv ZSGSRD 30736
17-03-18 02:35:26.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:26.494 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.494 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:26.494 -07 000000424 INF: FPGA: Recv ZSGSRD 30735
17-03-18 02:35:26.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:26.504 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:26.504 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.504 -07 000000569 INF: FPGA: Recv ZSGSRD 30737
17-03-18 02:35:26.514 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:26.514 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.514 -07 000000462 INF: FPGA: Recv ZSGSRD 30731
17-03-18 02:35:26.524 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:26.524 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.524 -07 000000579 INF: FPGA: Recv ZSGSRD 30731
17-03-18 02:35:26.534 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:26.534 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.534 -07 000000590 INF: FPGA: Recv ZSGSRD 30732
17-03-18 02:35:26.544 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:26.544 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:26.544 -07 000000424 INF: FPGA: Recv ZSGSRD 30736
17-03-18 02:35:26.554 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:26.554 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:26.554 -07 000000618 INF: FPGA: Recv ZPIEZORD 26606
17-03-18 02:35:26.564 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:26.564 -07 000000467 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.1 V.
17-03-18 02:35:26.564 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30734 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30735 (-137.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30731 (-136.9 uncal um), Max = 30737 (-137.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:35:26.564 -07 000000467 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30734, posNoise = 3, negNoise = 3
17-03-18 02:35:26.564 -07 000000467 INF: Z Motor: After move to -0.137752, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:26.564 -07 000000467 INF: Z Motor: Settle wait time = 1455 ms, measure time = 104 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:35:26.564 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:26.614 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:35:26.614 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:26.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:26.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:26.614 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:26.614 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:26.614 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:26.614 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:26.614 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:26.614 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:26.624 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:26.624 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:26.624 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:35:26.624 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:35:26.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:26.674 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:26.974 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:26.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:26.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:26.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:27.014 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:27.014 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:27.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:35:27.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:35:27.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:27.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:35:27.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:35:27.114 -07 000000502 INF: Autofocus start
17-03-18 02:35:27.114 -07 000000502 INF: MeasureProfile start
17-03-18 02:35:27.114 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:27.114 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:27.124 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:35:27.124 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:27.124 -07 000000502 INF: MeasureProfile done
17-03-18 02:35:27.124 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:35:27.124 -07 000000502 INF: Autofocus finished
17-03-18 02:35:27.324 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:27.324 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:27.324 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.137765087976016. ----------
17-03-18 02:35:27.324 -07 000000610 INF: Cycle	101	Tile	8	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:27.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28599, sync = True, waitForSettling = True)
17-03-18 02:35:27.334 -07 000000610 INF: Z Motor: Moving to -0.130918 mm, started at -0.137765 mm, distance = 6.85 um
17-03-18 02:35:27.334 -07 000000610 INF: FPGA: Xmit ZDACW 28599\n [Z Motor]
17-03-18 02:35:27.334 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:35:27.344 -07 000000610 INF: FPGA: 'ZDACW 28599' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:27.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:27.344 -07 000000576 INF: FPGA: Recv ZDACR 28599
17-03-18 02:35:27.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:27.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.504 -07 000000467 INF: FPGA: Recv ZSGSRD 29669
17-03-18 02:35:27.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:27.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.514 -07 000000461 INF: FPGA: Recv ZSGSRD 29676
17-03-18 02:35:27.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.524 -07 000000590 INF: FPGA: Recv ZSGSRD 29663
17-03-18 02:35:27.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.534 -07 000000569 INF: FPGA: Recv ZSGSRD 29668
17-03-18 02:35:27.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.544 -07 000000430 INF: FPGA: Recv ZSGSRD 29667
17-03-18 02:35:27.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.554 -07 000000561 INF: FPGA: Recv ZSGSRD 29670
17-03-18 02:35:27.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.564 -07 000000430 INF: FPGA: Recv ZSGSRD 29674
17-03-18 02:35:27.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.574 -07 000000424 INF: FPGA: Recv ZSGSRD 29663
17-03-18 02:35:27.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.584 -07 000000461 INF: FPGA: Recv ZSGSRD 29668
17-03-18 02:35:27.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:27.594 -07 000000590 INF: FPGA: Recv ZSGSRD 29674
17-03-18 02:35:27.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:27.604 -07 000000569 INF: FPGA: Recv ZPIEZORD 25168
17-03-18 02:35:27.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:27.614 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.9 V.
17-03-18 02:35:27.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29669 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29668 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29663 (-130.1 uncal um), Max = 29676 (-130.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:35:27.614 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29669, posNoise = 7, negNoise = 6
17-03-18 02:35:27.614 -07 000000610 INF: Z Motor: After move to -0.130918, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:27.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:35:27.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:27.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:27.614 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:27.614 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:27.614 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:27.614 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:27.614 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:27.614 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:27.614 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:27.614 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:27.624 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:35:27.624 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:27.624 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:27.624 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:27.624 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:35:27.624 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:27.634 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:35:27.634 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:35:27.634 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:35:27.634 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:35:27.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28776 150\n [Camera]
17-03-18 02:35:27.834 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:28.234 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:28.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:28.234 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:28.234 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:28.234 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:35:28.234 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:28.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:28.234 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:28.234 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:28.234 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:35:28.414 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.02213,
17-03-18 02:35:28.424 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28776 781
17-03-18 02:35:28.574 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:28.614 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:35:28.614 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:35:28.614 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:28.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:35:28.614 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:35:28.614 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:28.614 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:28.624 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:28.624 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:35:28.624 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:35:28.764 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:28.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:28.764 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:28.874 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:28.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:28.874 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:28.874 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:28.874 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:28.884 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:28.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:28.954 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:35:28.954 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:28.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28776 150' command took 2 ms to send, 1316 ms to get response, and 1320 ms overall
17-03-18 02:35:28.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:28.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.130923302045041. ------
17-03-18 02:35:28.964 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:28.964 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13736 mm
17-03-18 02:35:28.964 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:28.964 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:28.964 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:35:28.964 -07 000000512 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 02:35:28.964 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30006, sync = True, waitForSettling = False)
17-03-18 02:35:28.964 -07 000000569 INF: Z Motor: Moving to -0.137359 mm, started at -0.130923 mm, distance = -6.44 um
17-03-18 02:35:28.974 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:28.974 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:28.974 -07 000000462 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:35:28.984 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:35:28.984 -07 000000512 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:28.984 -07 000000569 INF: FPGA: Xmit ZDACW 30006\n [Z Motor]
17-03-18 02:35:28.984 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:35:28.984 -07 000000512 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:28.984 -07 000000512 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:35:28.994 -07 000000569 INF: FPGA: 'ZDACW 30006' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:35:28.994 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:29.004 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:29.014 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:29.014 -07 000000606 INF: FPGA: Recv ZDACR 30006
17-03-18 02:35:29.024 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:29.024 -07 000000569 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:35:29.194 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:29.194 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:35:29.274 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:35:29.274 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:35:29.274 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:29.274 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:35:29.284 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:35:29.284 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:29.284 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:29.284 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 02:35:29.284 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:29.294 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:35:29.384 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:35:29.384 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 392 ms overall
17-03-18 02:35:29.424 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:29.424 -07 000000569 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:35:29.434 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:35:29.434 -07 000000512 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:29.434 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:35:29.434 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-18 02:35:30.384 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:30.384 -07 000000590 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:35:30.394 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:30.394 -07 000000512 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:30.414 -07 000000512 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:30.414 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:30.414 -07 000000512 INF: Y Motor: Moved to 66.5386 after 1453 ms (table move)
17-03-18 02:35:30.424 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137359 mm (DAC = 30006)
17-03-18 02:35:30.424 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.424 -07 000000501 INF: FPGA: Recv ZSGSRD 30669
17-03-18 02:35:30.434 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:30.434 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.434 -07 000000467 INF: FPGA: Recv ZSGSRD 30677
17-03-18 02:35:30.444 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:30.444 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.444 -07 000000618 INF: FPGA: Recv ZSGSRD 30671
17-03-18 02:35:30.454 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:30.454 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.454 -07 000000444 INF: FPGA: Recv ZSGSRD 30664
17-03-18 02:35:30.464 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:30.464 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.464 -07 000000561 INF: FPGA: Recv ZSGSRD 30669
17-03-18 02:35:30.474 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:30.474 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.474 -07 000000501 INF: FPGA: Recv ZSGSRD 30675
17-03-18 02:35:30.484 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:30.484 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.484 -07 000000461 INF: FPGA: Recv ZSGSRD 30672
17-03-18 02:35:30.494 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:30.494 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.494 -07 000000512 INF: FPGA: Recv ZSGSRD 30673
17-03-18 02:35:30.504 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:30.504 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.504 -07 000000591 INF: FPGA: Recv ZSGSRD 30666
17-03-18 02:35:30.514 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:30.514 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:30.514 -07 000000430 INF: FPGA: Recv ZSGSRD 30677
17-03-18 02:35:30.524 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:30.524 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:30.524 -07 000000462 INF: FPGA: Recv ZPIEZORD 26488
17-03-18 02:35:30.534 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:30.534 -07 000000455 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.2 V.
17-03-18 02:35:30.534 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30671 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30672 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30664 (-136.5 uncal um), Max = 30677 (-136.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:35:30.534 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30671, posNoise = 6, negNoise = 7
17-03-18 02:35:30.534 -07 000000455 INF: Z Motor: After move to -0.137359, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:30.534 -07 000000455 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:35:30.534 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:30.584 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:35:30.584 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:30.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:30.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:30.584 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:30.584 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:30.584 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:30.584 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:30.584 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:30.584 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:30.594 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:30.594 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:30.604 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:35:30.604 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:35:30.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:30.644 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:30.944 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:30.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:30.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:30.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:30.984 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:30.984 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:30.984 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 02:35:31.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:35:31.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:31.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:35:31.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:35:31.184 -07 000000629 INF: Autofocus start
17-03-18 02:35:31.184 -07 000000629 INF: MeasureProfile start
17-03-18 02:35:31.184 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:31.184 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:31.194 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:31.194 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:31.194 -07 000000629 INF: MeasureProfile done
17-03-18 02:35:31.194 -07 000000629 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:35:31.194 -07 000000629 INF: Autofocus finished
17-03-18 02:35:31.394 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:31.394 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:31.394 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137360362611085. ----------
17-03-18 02:35:31.394 -07 000000610 INF: Cycle	101	Tile	9	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:31.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28501, sync = True, waitForSettling = True)
17-03-18 02:35:31.404 -07 000000610 INF: Z Motor: Moving to -0.130469 mm, started at -0.137360 mm, distance = 6.89 um
17-03-18 02:35:31.404 -07 000000610 INF: FPGA: Xmit ZDACW 28501\n [Z Motor]
17-03-18 02:35:31.404 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:35:31.414 -07 000000610 INF: FPGA: 'ZDACW 28501' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:31.414 -07 000000579 INF: FPGA: Recv ZDACR 28501
17-03-18 02:35:31.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:31.494 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:31.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:31.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.574 -07 000000576 INF: FPGA: Recv ZSGSRD 29597
17-03-18 02:35:31.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:31.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.584 -07 000000424 INF: FPGA: Recv ZSGSRD 29600
17-03-18 02:35:31.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.594 -07 000000467 INF: FPGA: Recv ZSGSRD 29603
17-03-18 02:35:31.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.604 -07 000000501 INF: FPGA: Recv ZSGSRD 29598
17-03-18 02:35:31.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.614 -07 000000462 INF: FPGA: Recv ZSGSRD 29598
17-03-18 02:35:31.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.624 -07 000000569 INF: FPGA: Recv ZSGSRD 29603
17-03-18 02:35:31.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.634 -07 000000502 INF: FPGA: Recv ZSGSRD 29599
17-03-18 02:35:31.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.644 -07 000000591 INF: FPGA: Recv ZSGSRD 29602
17-03-18 02:35:31.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.654 -07 000000444 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:35:31.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:31.664 -07 000000512 INF: FPGA: Recv ZSGSRD 29602
17-03-18 02:35:31.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:31.674 -07 000000590 INF: FPGA: Recv ZPIEZORD 25113
17-03-18 02:35:31.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:31.684 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.8 V.
17-03-18 02:35:31.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29600 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29600 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29594 (-129.7 uncal um), Max = 29603 (-129.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:35:31.684 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29600, posNoise = 3, negNoise = 6
17-03-18 02:35:31.684 -07 000000610 INF: Z Motor: After move to -0.130469, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:31.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:35:31.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:31.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:31.684 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:31.684 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:31.684 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:31.684 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:31.684 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:31.684 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:31.684 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:35:31.684 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:31.684 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:35:31.684 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:31.694 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:31.694 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:31.694 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:35:31.694 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:31.704 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:35:31.704 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:35:31.704 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:35:31.704 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:35:31.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28678 150\n [Camera]
17-03-18 02:35:31.904 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:32.294 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:32.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:32.294 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:32.304 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:32.304 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:35:32.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:32.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:32.304 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:32.304 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:32.304 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:35:32.494 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28678 781
17-03-18 02:35:32.644 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:32.694 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:35:32.694 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:35:32.694 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:32.694 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:35:32.694 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:35:32.694 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:32.704 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:35:32.704 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:35:32.704 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:35:32.704 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:35:32.834 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:32.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:32.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:32.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:32.944 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:32.944 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:32.954 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:32.954 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:32.954 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:32.954 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:33.024 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:35:33.024 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:33.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28678 150' command took 2 ms to send, 1313 ms to get response, and 1320 ms overall
17-03-18 02:35:33.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:33.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.130480031407259. ------
17-03-18 02:35:33.034 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13729 mm
17-03-18 02:35:33.034 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:33.034 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:33.034 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:35:33.034 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 02:35:33.034 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:33.034 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29990, sync = True, waitForSettling = False)
17-03-18 02:35:33.034 -07 000000462 INF: Z Motor: Moving to -0.137285 mm, started at -0.130480 mm, distance = -6.81 um
17-03-18 02:35:33.044 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:33.044 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:33.044 -07 000000618 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:35:33.054 -07 000000462 INF: FPGA: Xmit ZDACW 29990\n [Z Motor]
17-03-18 02:35:33.054 -07 000000576 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:35:33.054 -07 000000576 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:33.054 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:33.054 -07 000000576 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:35:33.054 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:35:33.064 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:33.064 -07 000000462 INF: FPGA: 'ZDACW 29990' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:35:33.074 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:33.084 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:33.084 -07 000000455 INF: FPGA: Recv ZDACR 29990
17-03-18 02:35:33.094 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:33.094 -07 000000462 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:35:33.264 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:33.264 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-18 02:35:33.334 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:35:33.334 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:35:33.334 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:33.334 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:35:33.334 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:35:33.344 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:33.344 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:35:33.344 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:35:33.344 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:35:33.354 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:35:33.444 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:35:33.444 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:35:33.514 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:33.514 -07 000000618 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:35:33.524 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:35:33.524 -07 000000576 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:33.524 -07 000000576 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-18 02:35:33.524 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 02:35:33.794 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.031682,
17-03-18 02:35:34.474 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:34.474 -07 000000462 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:35:34.484 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:34.484 -07 000000576 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:34.504 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:34.504 -07 000000576 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:34.504 -07 000000576 INF: Y Motor: Moved to 67.3716 after 1474 ms (table move)
17-03-18 02:35:34.514 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137285 mm (DAC = 29990)
17-03-18 02:35:34.514 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.514 -07 000000455 INF: FPGA: Recv ZSGSRD 30668
17-03-18 02:35:34.524 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:34.524 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.524 -07 000000462 INF: FPGA: Recv ZSGSRD 30663
17-03-18 02:35:34.534 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:34.534 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.534 -07 000000590 INF: FPGA: Recv ZSGSRD 30659
17-03-18 02:35:34.544 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:34.544 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.544 -07 000000467 INF: FPGA: Recv ZSGSRD 30664
17-03-18 02:35:34.554 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:34.554 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.554 -07 000000591 INF: FPGA: Recv ZSGSRD 30659
17-03-18 02:35:34.564 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:34.564 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.564 -07 000000424 INF: FPGA: Recv ZSGSRD 30658
17-03-18 02:35:34.574 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:34.574 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.574 -07 000000618 INF: FPGA: Recv ZSGSRD 30665
17-03-18 02:35:34.584 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:34.584 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.584 -07 000000462 INF: FPGA: Recv ZSGSRD 30663
17-03-18 02:35:34.594 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:34.594 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.594 -07 000000444 INF: FPGA: Recv ZSGSRD 30664
17-03-18 02:35:34.604 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:34.604 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:34.604 -07 000000502 INF: FPGA: Recv ZSGSRD 30657
17-03-18 02:35:34.614 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:34.614 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:34.614 -07 000000461 INF: FPGA: Recv ZPIEZORD 26520
17-03-18 02:35:34.624 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:34.624 -07 000000579 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.1 V.
17-03-18 02:35:34.624 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30662 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30663 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30657 (-136.5 uncal um), Max = 30668 (-136.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:35:34.624 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30662, posNoise = 6, negNoise = 5
17-03-18 02:35:34.624 -07 000000579 INF: Z Motor: After move to -0.137285, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:34.624 -07 000000579 INF: Z Motor: Settle wait time = 1476 ms, measure time = 109 ms (allowed 150 ms), total time = 1585 ms
17-03-18 02:35:34.624 -07 000000579 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:34.674 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1639 ms
17-03-18 02:35:34.674 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:34.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:34.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:34.674 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:34.674 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:34.684 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:34.684 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:34.684 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:35:34.684 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:34.684 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:34.684 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:34.694 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:35:34.694 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:35:34.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:34.744 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:35.044 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:35.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:35.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:35.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:35.084 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:35.084 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:35.084 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:35:35.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:35:35.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:35.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:35:35.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:35:35.184 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:35.184 -07 000000455 INF: Autofocus start
17-03-18 02:35:35.184 -07 000000455 INF: MeasureProfile start
17-03-18 02:35:35.184 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:35.194 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:35.194 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:35.194 -07 000000455 INF: MeasureProfile done
17-03-18 02:35:35.194 -07 000000455 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:35:35.194 -07 000000455 INF: Autofocus finished
17-03-18 02:35:35.394 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:35.394 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:35.394 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.137302544701809. ----------
17-03-18 02:35:35.394 -07 000000610 INF: Cycle	101	Tile	10	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:35.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28531, sync = True, waitForSettling = True)
17-03-18 02:35:35.404 -07 000000610 INF: Z Motor: Moving to -0.130607 mm, started at -0.137303 mm, distance = 6.70 um
17-03-18 02:35:35.404 -07 000000610 INF: FPGA: Xmit ZDACW 28531\n [Z Motor]
17-03-18 02:35:35.404 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:35:35.414 -07 000000610 INF: FPGA: 'ZDACW 28531' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:35.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:35.414 -07 000000561 INF: FPGA: Recv ZDACR 28531
17-03-18 02:35:35.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:35.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.574 -07 000000502 INF: FPGA: Recv ZSGSRD 29621
17-03-18 02:35:35.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:35.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.584 -07 000000455 INF: FPGA: Recv ZSGSRD 29616
17-03-18 02:35:35.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.594 -07 000000461 INF: FPGA: Recv ZSGSRD 29625
17-03-18 02:35:35.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.604 -07 000000626 INF: FPGA: Recv ZSGSRD 29621
17-03-18 02:35:35.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.614 -07 000000590 INF: FPGA: Recv ZSGSRD 29619
17-03-18 02:35:35.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.624 -07 000000424 INF: FPGA: Recv ZSGSRD 29623
17-03-18 02:35:35.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.634 -07 000000455 INF: FPGA: Recv ZSGSRD 29620
17-03-18 02:35:35.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.644 -07 000000629 INF: FPGA: Recv ZSGSRD 29627
17-03-18 02:35:35.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.654 -07 000000626 INF: FPGA: Recv ZSGSRD 29616
17-03-18 02:35:35.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:35.664 -07 000000561 INF: FPGA: Recv ZSGSRD 29624
17-03-18 02:35:35.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:35.674 -07 000000502 INF: FPGA: Recv ZPIEZORD 25145
17-03-18 02:35:35.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:35.684 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.8 V.
17-03-18 02:35:35.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29621 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29621 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29616 (-129.8 uncal um), Max = 29627 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:35:35.684 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29621, posNoise = 6, negNoise = 5
17-03-18 02:35:35.684 -07 000000610 INF: Z Motor: After move to -0.130607, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:35.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:35:35.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:35.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:35.684 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:35.684 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:35.684 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:35.684 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:35.684 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:35.684 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:35.684 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:35:35.684 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:35:35.684 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:35.684 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:35.694 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:35.694 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:35.694 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:35:35.694 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:35.704 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:35:35.704 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:35:35.704 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:35:35.704 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:35:35.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28708 150\n [Camera]
17-03-18 02:35:35.904 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:36.294 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:36.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:36.304 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:36.304 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:36.304 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:35:36.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:36.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:36.304 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:36.304 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:36.304 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:35:36.494 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28708 781
17-03-18 02:35:36.494 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:36.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:36.644 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:36.684 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:35:36.684 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:35:36.684 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:36.684 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:35:36.684 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:35:36.684 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:36.684 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:36.694 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:36.694 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:35:36.814 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-18 02:35:36.834 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:36.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:36.834 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:36.834 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:36.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:36.834 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:36.834 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:36.834 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:36.834 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:36.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:37.024 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:35:37.024 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:37.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28708 150' command took 2 ms to send, 1314 ms to get response, and 1321 ms overall
17-03-18 02:35:37.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:37.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130614939862236. ------
17-03-18 02:35:37.024 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:37.024 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13694 mm
17-03-18 02:35:37.024 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:37.034 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:37.034 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:35:37.034 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29914, sync = True, waitForSettling = False)
17-03-18 02:35:37.034 -07 000000561 INF: Z Motor: Moving to -0.136938 mm, started at -0.130615 mm, distance = -6.32 um
17-03-18 02:35:37.034 -07 000000561 INF: FPGA: Xmit ZDACW 29914\n [Z Motor]
17-03-18 02:35:37.034 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:35:37.034 -07 000000591 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:35:37.034 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:35:37.044 -07 000000561 INF: FPGA: 'ZDACW 29914' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:35:37.044 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:37.054 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:37.054 -07 000000455 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:35:37.064 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:37.064 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:35:37.064 -07 000000591 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:37.064 -07 000000591 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:37.064 -07 000000591 INF: Y Motor: Moving 1346 steps-23
17-03-18 02:35:37.064 -07 000000579 INF: FPGA: Recv ZDACR 29914
17-03-18 02:35:37.074 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:37.074 -07 000000561 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 02:35:37.074 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:37.224 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:35:37.224 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:35:37.224 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:37.234 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:37.234 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:35:37.234 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:35:37.234 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:37.244 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:35:37.244 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:37.244 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:35:37.244 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:37.244 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-18 02:35:37.444 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:35:37.444 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:35:37.494 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:37.494 -07 000000579 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:35:37.504 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:35:37.504 -07 000000591 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:37.504 -07 000000591 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:35:37.504 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.841 mm, average velocity = 2.173 mm/sec
17-03-18 02:35:38.454 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:38.454 -07 000000512 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:35:38.464 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:38.464 -07 000000591 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:38.484 -07 000000591 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:38.484 -07 000000591 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:38.484 -07 000000591 INF: Y Motor: Moved to 68.2046 after 1451 ms (table move)
17-03-18 02:35:38.494 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136938 mm (DAC = 29914)
17-03-18 02:35:38.494 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.494 -07 000000606 INF: FPGA: Recv ZSGSRD 30612
17-03-18 02:35:38.504 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.504 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.504 -07 000000576 INF: FPGA: Recv ZSGSRD 30610
17-03-18 02:35:38.514 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.524 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.524 -07 000000561 INF: FPGA: Recv ZSGSRD 30607
17-03-18 02:35:38.534 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:35:38.534 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.534 -07 000000590 INF: FPGA: Recv ZSGSRD 30605
17-03-18 02:35:38.544 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.544 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.544 -07 000000618 INF: FPGA: Recv ZSGSRD 30607
17-03-18 02:35:38.554 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.554 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.554 -07 000000569 INF: FPGA: Recv ZSGSRD 30604
17-03-18 02:35:38.564 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.564 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.564 -07 000000579 INF: FPGA: Recv ZSGSRD 30598
17-03-18 02:35:38.574 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.574 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.574 -07 000000467 INF: FPGA: Recv ZSGSRD 30609
17-03-18 02:35:38.584 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.584 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.584 -07 000000590 INF: FPGA: Recv ZSGSRD 30607
17-03-18 02:35:38.594 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.594 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:38.594 -07 000000606 INF: FPGA: Recv ZSGSRD 30608
17-03-18 02:35:38.604 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.604 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:38.604 -07 000000569 INF: FPGA: Recv ZPIEZORD 26466
17-03-18 02:35:38.614 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:38.614 -07 000000461 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.565 V. Piezo Error = -9.1 V.
17-03-18 02:35:38.614 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30607 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30607 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30598 (-136.1 uncal um), Max = 30612 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:35:38.614 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30607, posNoise = 5, negNoise = 9
17-03-18 02:35:38.614 -07 000000461 INF: Z Motor: After move to -0.136938, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:38.614 -07 000000461 INF: Z Motor: Settle wait time = 1455 ms, measure time = 120 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:35:38.614 -07 000000461 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:38.644 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:35:38.644 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:38.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:38.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:38.644 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:38.644 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:38.644 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:38.644 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:38.644 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:38.644 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:38.654 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:38.654 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:38.654 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:35:38.654 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:35:38.664 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:38.704 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:39.004 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:39.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:39.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:39.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:39.044 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:39.044 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:39.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:35:39.124 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:35:39.124 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:39.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:35:39.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:35:39.144 -07 000000512 INF: Autofocus start
17-03-18 02:35:39.144 -07 000000512 INF: MeasureProfile start
17-03-18 02:35:39.154 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:39.154 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.999021,
17-03-18 02:35:39.154 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:39.164 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:35:39.164 -07 000000512 INF: MeasureProfile done
17-03-18 02:35:39.164 -07 000000512 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:35:39.164 -07 000000512 INF: Autofocus finished
17-03-18 02:35:39.184 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:39.384 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:39.384 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:35:39.384 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.136949213034013. ----------
17-03-18 02:35:39.384 -07 000000610 INF: Cycle	101	Tile	11	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:39.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28438, sync = True, waitForSettling = True)
17-03-18 02:35:39.394 -07 000000610 INF: Z Motor: Moving to -0.130181 mm, started at -0.136949 mm, distance = 6.77 um
17-03-18 02:35:39.394 -07 000000610 INF: FPGA: Xmit ZDACW 28438\n [Z Motor]
17-03-18 02:35:39.394 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:35:39.404 -07 000000610 INF: FPGA: 'ZDACW 28438' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:39.404 -07 000000424 INF: FPGA: Recv ZDACR 28438
17-03-18 02:35:39.414 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:39.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.564 -07 000000590 INF: FPGA: Recv ZSGSRD 29552
17-03-18 02:35:39.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:39.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.574 -07 000000512 INF: FPGA: Recv ZSGSRD 29558
17-03-18 02:35:39.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.584 -07 000000576 INF: FPGA: Recv ZSGSRD 29559
17-03-18 02:35:39.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:39.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.594 -07 000000579 INF: FPGA: Recv ZSGSRD 29559
17-03-18 02:35:39.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.604 -07 000000461 INF: FPGA: Recv ZSGSRD 29553
17-03-18 02:35:39.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.614 -07 000000501 INF: FPGA: Recv ZSGSRD 29557
17-03-18 02:35:39.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.624 -07 000000455 INF: FPGA: Recv ZSGSRD 29548
17-03-18 02:35:39.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.634 -07 000000629 INF: FPGA: Recv ZSGSRD 29551
17-03-18 02:35:39.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.644 -07 000000444 INF: FPGA: Recv ZSGSRD 29555
17-03-18 02:35:39.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:39.654 -07 000000461 INF: FPGA: Recv ZSGSRD 29550
17-03-18 02:35:39.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:39.664 -07 000000618 INF: FPGA: Recv ZPIEZORD 25071
17-03-18 02:35:39.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:39.674 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.339 V. Piezo Error = -9.8 V.
17-03-18 02:35:39.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29554 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29554 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29548 (-129.4 uncal um), Max = 29559 (-129.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:35:39.674 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29554, posNoise = 5, negNoise = 6
17-03-18 02:35:39.674 -07 000000610 INF: Z Motor: After move to -0.130181, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:39.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:35:39.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:39.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:39.674 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:39.674 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:39.674 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:39.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:39.674 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:39.674 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:39.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:39.674 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:39.674 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:35:39.674 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:39.684 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:35:39.684 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:39.684 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:35:39.684 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:39.694 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:35:39.694 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:35:39.694 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:35:39.694 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:35:39.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28615 150\n [Camera]
17-03-18 02:35:39.894 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:40.294 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:40.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:40.294 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:40.294 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:40.294 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:35:40.294 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:40.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:40.294 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:40.294 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:40.294 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:35:40.484 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28615 781
17-03-18 02:35:40.634 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:40.684 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:35:40.684 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:35:40.684 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:40.684 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:35:40.684 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:40.684 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:35:40.684 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:35:40.684 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:40.694 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:40.694 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:35:40.824 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:40.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:40.824 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:40.934 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:40.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:40.944 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:40.944 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:40.944 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:40.944 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:40.944 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:41.014 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:35:41.014 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:41.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28615 150' command took 2 ms to send, 1308 ms to get response, and 1320 ms overall
17-03-18 02:35:41.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:41.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.130184517648738. ------
17-03-18 02:35:41.024 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:41.024 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13689 mm
17-03-18 02:35:41.024 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:41.024 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:35:41.024 -07 000000424 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 02:35:41.024 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29903, sync = True, waitForSettling = False)
17-03-18 02:35:41.024 -07 000000512 INF: Z Motor: Moving to -0.136887 mm, started at -0.130185 mm, distance = -6.70 um
17-03-18 02:35:41.024 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:41.034 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:35:41.034 -07 000000512 INF: FPGA: Xmit ZDACW 29903\n [Z Motor]
17-03-18 02:35:41.034 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:35:41.044 -07 000000512 INF: FPGA: 'ZDACW 29903' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:35:41.044 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:41.044 -07 000000467 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:35:41.054 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:41.054 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:35:41.054 -07 000000424 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:41.054 -07 000000424 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:41.054 -07 000000424 INF: Y Motor: Moving 1341 steps-16
17-03-18 02:35:41.064 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:41.064 -07 000000430 INF: FPGA: Recv ZDACR 29903
17-03-18 02:35:41.074 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:41.074 -07 000000512 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:35:41.074 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:41.254 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:41.254 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:35:41.344 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:35:41.344 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:35:41.344 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:41.344 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:35:41.344 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:35:41.344 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:41.344 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:41.344 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 02:35:41.344 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:41.354 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:35:41.444 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:35:41.444 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:35:41.494 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:41.494 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:41.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:41.494 -07 000000579 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:35:41.504 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:35:41.504 -07 000000424 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:41.504 -07 000000424 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 02:35:41.504 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-18 02:35:42.454 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:42.454 -07 000000461 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:35:42.464 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:42.464 -07 000000424 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:42.484 -07 000000424 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:42.484 -07 000000424 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:42.484 -07 000000424 INF: Y Motor: Moved to 69.0269 after 1460 ms (table move)
17-03-18 02:35:42.494 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136887 mm (DAC = 29903)
17-03-18 02:35:42.494 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.494 -07 000000455 INF: FPGA: Recv ZSGSRD 30602
17-03-18 02:35:42.504 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:42.504 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.504 -07 000000501 INF: FPGA: Recv ZSGSRD 30608
17-03-18 02:35:42.514 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.514 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.514 -07 000000561 INF: FPGA: Recv ZSGSRD 30600
17-03-18 02:35:42.524 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.524 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.524 -07 000000430 INF: FPGA: Recv ZSGSRD 30598
17-03-18 02:35:42.534 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.534 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.534 -07 000000512 INF: FPGA: Recv ZSGSRD 30594
17-03-18 02:35:42.544 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.544 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.544 -07 000000462 INF: FPGA: Recv ZSGSRD 30592
17-03-18 02:35:42.554 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.554 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.554 -07 000000461 INF: FPGA: Recv ZSGSRD 30602
17-03-18 02:35:42.564 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.564 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.564 -07 000000626 INF: FPGA: Recv ZSGSRD 30597
17-03-18 02:35:42.574 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.574 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.574 -07 000000455 INF: FPGA: Recv ZSGSRD 30601
17-03-18 02:35:42.584 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.584 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:42.584 -07 000000461 INF: FPGA: Recv ZSGSRD 30604
17-03-18 02:35:42.594 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.594 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:42.594 -07 000000626 INF: FPGA: Recv ZPIEZORD 26466
17-03-18 02:35:42.604 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:42.604 -07 000000502 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.1 V.
17-03-18 02:35:42.604 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30600 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30600 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30592 (-136.1 uncal um), Max = 30608 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:35:42.604 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30600, posNoise = 8, negNoise = 8
17-03-18 02:35:42.604 -07 000000502 INF: Z Motor: After move to -0.136887, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:42.604 -07 000000502 INF: Z Motor: Settle wait time = 1463 ms, measure time = 109 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:35:42.604 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:42.654 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 02:35:42.654 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:42.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:42.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:42.654 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:42.654 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:42.654 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:42.654 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:42.664 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:42.664 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:42.664 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:42.664 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:42.674 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:35:42.674 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:35:42.674 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:42.724 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:43.024 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:43.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:43.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:43.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:43.064 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:43.064 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:43.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:35:43.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:35:43.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:43.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:35:43.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:35:43.164 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:43.164 -07 000000424 INF: Autofocus start
17-03-18 02:35:43.164 -07 000000424 INF: MeasureProfile start
17-03-18 02:35:43.164 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:43.174 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:43.174 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:43.174 -07 000000424 INF: MeasureProfile done
17-03-18 02:35:43.174 -07 000000424 INF: X=-7  Z correction [um]=-0.03747771
17-03-18 02:35:43.174 -07 000000424 INF: Autofocus finished
17-03-18 02:35:43.374 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:43.374 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:43.374 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.13690424354902. ----------
17-03-18 02:35:43.374 -07 000000610 INF: Cycle	101	Tile	12	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:43.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28407, sync = True, waitForSettling = True)
17-03-18 02:35:43.384 -07 000000610 INF: Z Motor: Moving to -0.130039 mm, started at -0.136904 mm, distance = 6.87 um
17-03-18 02:35:43.384 -07 000000610 INF: FPGA: Xmit ZDACW 28407\n [Z Motor]
17-03-18 02:35:43.384 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:35:43.394 -07 000000610 INF: FPGA: 'ZDACW 28407' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:43.394 -07 000000462 INF: FPGA: Recv ZDACR 28407
17-03-18 02:35:43.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:43.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.554 -07 000000561 INF: FPGA: Recv ZSGSRD 29532
17-03-18 02:35:43.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.564 -07 000000444 INF: FPGA: Recv ZSGSRD 29524
17-03-18 02:35:43.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.574 -07 000000502 INF: FPGA: Recv ZSGSRD 29531
17-03-18 02:35:43.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.584 -07 000000461 INF: FPGA: Recv ZSGSRD 29535
17-03-18 02:35:43.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.594 -07 000000430 INF: FPGA: Recv ZSGSRD 29533
17-03-18 02:35:43.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.604 -07 000000467 INF: FPGA: Recv ZSGSRD 29529
17-03-18 02:35:43.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.614 -07 000000618 INF: FPGA: Recv ZSGSRD 29527
17-03-18 02:35:43.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:43.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.624 -07 000000626 INF: FPGA: Recv ZSGSRD 29532
17-03-18 02:35:43.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.634 -07 000000501 INF: FPGA: Recv ZSGSRD 29535
17-03-18 02:35:43.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:43.644 -07 000000629 INF: FPGA: Recv ZSGSRD 29531
17-03-18 02:35:43.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:43.654 -07 000000512 INF: FPGA: Recv ZPIEZORD 25064
17-03-18 02:35:43.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:43.664 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.335 V. Piezo Error = -9.8 V.
17-03-18 02:35:43.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29531 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29532 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29524 (-129.2 uncal um), Max = 29535 (-129.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:35:43.664 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29531, posNoise = 4, negNoise = 7
17-03-18 02:35:43.664 -07 000000610 INF: Z Motor: After move to -0.130039, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:43.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:35:43.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:43.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:43.664 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:43.664 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:43.664 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:43.664 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:43.664 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:43.664 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:43.664 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:43.664 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:43.664 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:35:43.664 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:43.674 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:35:43.674 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:43.674 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:43.674 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:43.674 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:35:43.674 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:35:43.684 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:35:43.684 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:35:43.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28584 150\n [Camera]
17-03-18 02:35:43.884 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:44.284 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:44.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:44.284 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:44.284 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:44.284 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:35:44.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:44.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:44.284 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:44.284 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:44.284 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:35:44.474 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28584 781
17-03-18 02:35:44.534 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.979922,
17-03-18 02:35:44.624 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:44.664 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:35:44.664 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:35:44.664 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:44.664 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:35:44.664 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:35:44.664 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:44.664 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:44.664 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:35:44.664 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:44.674 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:35:44.814 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:44.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:44.814 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:44.924 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:44.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:44.924 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:44.924 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:44.924 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:44.934 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:44.934 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:45.004 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:35:45.004 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:45.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28584 150' command took 2 ms to send, 1315 ms to get response, and 1320 ms overall
17-03-18 02:35:45.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:45.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.130036760769478. ------
17-03-18 02:35:45.014 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:45.014 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13651 mm
17-03-18 02:35:45.014 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:45.014 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:45.014 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29821, sync = True, waitForSettling = False)
17-03-18 02:35:45.014 -07 000000424 INF: Z Motor: Moving to -0.136512 mm, started at -0.130037 mm, distance = -6.48 um
17-03-18 02:35:45.014 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:35:45.014 -07 000000502 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 02:35:45.024 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:45.024 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:45.024 -07 000000629 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:35:45.034 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:35:45.034 -07 000000424 INF: FPGA: Xmit ZDACW 29821\n [Z Motor]
17-03-18 02:35:45.034 -07 000000502 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:45.034 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:35:45.034 -07 000000502 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:45.034 -07 000000502 INF: Y Motor: Moving 1352 steps-32
17-03-18 02:35:45.044 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:45.044 -07 000000424 INF: FPGA: 'ZDACW 29821' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:35:45.054 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:45.064 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:45.064 -07 000000576 INF: FPGA: Recv ZDACR 29821
17-03-18 02:35:45.074 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:45.074 -07 000000424 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 02:35:45.244 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:45.244 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:35:45.334 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:35:45.334 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:35:45.334 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:45.334 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:35:45.334 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:35:45.334 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:45.334 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:45.334 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 02:35:45.334 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:45.344 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:35:45.424 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:35:45.424 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:35:45.474 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:45.474 -07 000000424 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:35:45.484 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:45.484 -07 000000502 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:45.484 -07 000000502 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:35:45.484 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.846 mm, average velocity = 2.163 mm/sec
17-03-18 02:35:46.434 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:46.434 -07 000000618 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:35:46.444 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:46.444 -07 000000502 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:46.464 -07 000000502 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:46.464 -07 000000502 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:46.464 -07 000000502 INF: Y Motor: Moved to 69.8628 after 1453 ms (table move)
17-03-18 02:35:46.474 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136512 mm (DAC = 29821)
17-03-18 02:35:46.474 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.474 -07 000000467 INF: FPGA: Recv ZSGSRD 30536
17-03-18 02:35:46.484 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:46.484 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.484 -07 000000618 INF: FPGA: Recv ZSGSRD 30540
17-03-18 02:35:46.494 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.494 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.494 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:46.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:46.494 -07 000000626 INF: FPGA: Recv ZSGSRD 30548
17-03-18 02:35:46.504 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.504 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.504 -07 000000467 INF: FPGA: Recv ZSGSRD 30540
17-03-18 02:35:46.514 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.514 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.514 -07 000000579 INF: FPGA: Recv ZSGSRD 30537
17-03-18 02:35:46.524 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.524 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.524 -07 000000561 INF: FPGA: Recv ZSGSRD 30542
17-03-18 02:35:46.534 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.534 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.534 -07 000000591 INF: FPGA: Recv ZSGSRD 30538
17-03-18 02:35:46.544 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.544 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.544 -07 000000569 INF: FPGA: Recv ZSGSRD 30542
17-03-18 02:35:46.554 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.554 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.554 -07 000000629 INF: FPGA: Recv ZSGSRD 30533
17-03-18 02:35:46.564 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.564 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:46.564 -07 000000424 INF: FPGA: Recv ZSGSRD 30541
17-03-18 02:35:46.574 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.574 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:46.574 -07 000000502 INF: FPGA: Recv ZPIEZORD 26425
17-03-18 02:35:46.584 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:46.584 -07 000000501 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.550 V. Piezo Error = -9.1 V.
17-03-18 02:35:46.584 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30540 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30540 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30533 (-135.7 uncal um), Max = 30548 (-135.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:35:46.584 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30540, posNoise = 8, negNoise = 7
17-03-18 02:35:46.584 -07 000000501 INF: Z Motor: After move to -0.136512, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:46.584 -07 000000501 INF: Z Motor: Settle wait time = 1457 ms, measure time = 109 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:35:46.584 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:46.634 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:35:46.634 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:46.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:46.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:46.634 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:46.634 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:46.634 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:46.634 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:46.644 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:46.644 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:46.644 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:46.644 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:46.644 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:35:46.644 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:35:46.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:46.694 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:46.994 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:46.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:46.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:47.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:47.034 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:47.034 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:47.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 02:35:47.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:35:47.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:47.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:35:47.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:35:47.134 -07 000000626 INF: Autofocus start
17-03-18 02:35:47.134 -07 000000626 INF: MeasureProfile start
17-03-18 02:35:47.134 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:47.134 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:47.144 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:47.144 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:47.144 -07 000000626 INF: MeasureProfile done
17-03-18 02:35:47.144 -07 000000626 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:35:47.144 -07 000000626 INF: Autofocus finished
17-03-18 02:35:47.344 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:47.344 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:47.344 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136518790820515. ----------
17-03-18 02:35:47.344 -07 000000610 INF: Cycle	101	Tile	13	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:47.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28316, sync = True, waitForSettling = True)
17-03-18 02:35:47.354 -07 000000610 INF: Z Motor: Moving to -0.129622 mm, started at -0.136519 mm, distance = 6.90 um
17-03-18 02:35:47.354 -07 000000610 INF: FPGA: Xmit ZDACW 28316\n [Z Motor]
17-03-18 02:35:47.354 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:35:47.364 -07 000000610 INF: FPGA: 'ZDACW 28316' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:47.364 -07 000000430 INF: FPGA: Recv ZDACR 28316
17-03-18 02:35:47.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:47.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.524 -07 000000629 INF: FPGA: Recv ZSGSRD 29466
17-03-18 02:35:47.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:47.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.534 -07 000000618 INF: FPGA: Recv ZSGSRD 29468
17-03-18 02:35:47.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.544 -07 000000501 INF: FPGA: Recv ZSGSRD 29465
17-03-18 02:35:47.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.554 -07 000000626 INF: FPGA: Recv ZSGSRD 29469
17-03-18 02:35:47.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.564 -07 000000569 INF: FPGA: Recv ZSGSRD 29465
17-03-18 02:35:47.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:47.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.574 -07 000000424 INF: FPGA: Recv ZSGSRD 29465
17-03-18 02:35:47.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.584 -07 000000512 INF: FPGA: Recv ZSGSRD 29469
17-03-18 02:35:47.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.594 -07 000000455 INF: FPGA: Recv ZSGSRD 29470
17-03-18 02:35:47.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.604 -07 000000591 INF: FPGA: Recv ZSGSRD 29470
17-03-18 02:35:47.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:47.614 -07 000000579 INF: FPGA: Recv ZSGSRD 29466
17-03-18 02:35:47.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:47.624 -07 000000430 INF: FPGA: Recv ZPIEZORD 25004
17-03-18 02:35:47.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:47.634 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.8 V.
17-03-18 02:35:47.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29467 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29467 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29465 (-128.8 uncal um), Max = 29470 (-128.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:35:47.634 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29467, posNoise = 3, negNoise = 2
17-03-18 02:35:47.634 -07 000000610 INF: Z Motor: After move to -0.129622, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:47.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:35:47.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:47.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:47.634 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:47.634 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:47.634 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:47.634 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:47.634 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:47.634 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:47.634 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:47.634 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:47.634 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:35:47.634 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:47.634 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:47.634 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:47.634 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:35:47.634 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:47.644 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:35:47.644 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:35:47.644 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:35:47.644 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:35:47.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28493 150\n [Camera]
17-03-18 02:35:47.854 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:48.254 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:48.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:48.254 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:48.254 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:48.254 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:35:48.254 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:48.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:48.254 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:48.254 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:48.254 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:35:48.444 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28493 781
17-03-18 02:35:48.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:48.634 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:35:48.634 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:35:48.634 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:48.634 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:35:48.634 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:35:48.634 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:48.644 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:48.644 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:35:48.644 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:48.654 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:35:48.784 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:48.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:48.784 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:48.894 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:48.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:48.894 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:48.894 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:48.894 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:48.904 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:48.904 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:48.974 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:35:48.974 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:48.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28493 150' command took 2 ms to send, 1315 ms to get response, and 1321 ms overall
17-03-18 02:35:48.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:48.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129625611192405. ------
17-03-18 02:35:48.984 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:48.984 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13604 mm
17-03-18 02:35:48.984 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:48.984 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:48.984 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29717, sync = True, waitForSettling = False)
17-03-18 02:35:48.984 -07 000000561 INF: Z Motor: Moving to -0.136036 mm, started at -0.129626 mm, distance = -6.41 um
17-03-18 02:35:48.984 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:35:48.984 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 02:35:48.994 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:48.994 -07 000000561 INF: FPGA: Xmit ZDACW 29717\n [Z Motor]
17-03-18 02:35:48.994 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:35:49.004 -07 000000561 INF: FPGA: 'ZDACW 29717' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:35:49.004 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:49.004 -07 000000461 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:35:49.014 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:49.014 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:35:49.014 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:49.014 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:49.014 -07 000000626 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:35:49.024 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:49.024 -07 000000430 INF: FPGA: Recv ZDACR 29717
17-03-18 02:35:49.034 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:49.034 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:49.034 -07 000000561 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:35:49.214 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:49.214 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:35:49.294 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:35:49.294 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:35:49.294 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:49.294 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:49.294 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:35:49.294 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:35:49.294 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:49.304 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:35:49.304 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:49.304 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 02:35:49.404 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:35:49.404 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 393 ms overall
17-03-18 02:35:49.454 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:49.454 -07 000000629 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:35:49.464 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:35:49.464 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:49.464 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:35:49.464 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-18 02:35:49.894 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.951279,
17-03-18 02:35:50.414 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:50.414 -07 000000430 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:35:50.424 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:50.424 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:50.444 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:50.444 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:50.444 -07 000000626 INF: Y Motor: Moved to 70.6880 after 1464 ms (table move)
17-03-18 02:35:50.454 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136036 mm (DAC = 29717)
17-03-18 02:35:50.454 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.454 -07 000000444 INF: FPGA: Recv ZSGSRD 30469
17-03-18 02:35:50.464 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:50.464 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.464 -07 000000576 INF: FPGA: Recv ZSGSRD 30472
17-03-18 02:35:50.474 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.474 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.474 -07 000000629 INF: FPGA: Recv ZSGSRD 30467
17-03-18 02:35:50.484 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.484 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.484 -07 000000501 INF: FPGA: Recv ZSGSRD 30465
17-03-18 02:35:50.494 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.494 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.494 -07 000000590 INF: FPGA: Recv ZSGSRD 30463
17-03-18 02:35:50.504 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.504 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.504 -07 000000512 INF: FPGA: Recv ZSGSRD 30467
17-03-18 02:35:50.514 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.514 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.514 -07 000000467 INF: FPGA: Recv ZSGSRD 30470
17-03-18 02:35:50.524 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.524 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.524 -07 000000455 INF: FPGA: Recv ZSGSRD 30461
17-03-18 02:35:50.534 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.534 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.534 -07 000000569 INF: FPGA: Recv ZSGSRD 30467
17-03-18 02:35:50.544 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.544 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:50.544 -07 000000576 INF: FPGA: Recv ZSGSRD 30467
17-03-18 02:35:50.554 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.554 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:50.554 -07 000000424 INF: FPGA: Recv ZPIEZORD 26333
17-03-18 02:35:50.564 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:50.564 -07 000000462 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.535 V. Piezo Error = -9.1 V.
17-03-18 02:35:50.564 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30467 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30467 (-135.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30461 (-135.2 uncal um), Max = 30472 (-135.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:35:50.564 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30467, posNoise = 5, negNoise = 6
17-03-18 02:35:50.564 -07 000000462 INF: Z Motor: After move to -0.136036, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:50.564 -07 000000462 INF: Z Motor: Settle wait time = 1468 ms, measure time = 108 ms (allowed 150 ms), total time = 1576 ms
17-03-18 02:35:50.564 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:50.614 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:35:50.614 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:50.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:50.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:50.614 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:50.614 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:50.614 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:50.614 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:50.614 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:50.614 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:50.624 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:50.624 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:50.634 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:35:50.634 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 02:35:50.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:50.684 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:50.984 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:50.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:50.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:50.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:51.024 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:51.024 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:51.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 02:35:51.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:35:51.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:51.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:35:51.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:35:51.124 -07 000000462 INF: Autofocus start
17-03-18 02:35:51.124 -07 000000462 INF: MeasureProfile start
17-03-18 02:35:51.124 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:51.124 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:51.134 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:35:51.134 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:51.134 -07 000000462 INF: MeasureProfile done
17-03-18 02:35:51.134 -07 000000462 INF: X=-128  Z correction [um]=-0.6264838
17-03-18 02:35:51.134 -07 000000462 INF: Autofocus finished
17-03-18 02:35:51.334 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:51.334 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:35:51.334 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.136049823334166. ----------
17-03-18 02:35:51.334 -07 000000610 INF: Cycle	101	Tile	14	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:51.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28093, sync = True, waitForSettling = True)
17-03-18 02:35:51.344 -07 000000610 INF: Z Motor: Moving to -0.128602 mm, started at -0.136050 mm, distance = 7.45 um
17-03-18 02:35:51.344 -07 000000610 INF: FPGA: Xmit ZDACW 28093\n [Z Motor]
17-03-18 02:35:51.344 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:35:51.354 -07 000000610 INF: FPGA: 'ZDACW 28093' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:51.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:51.354 -07 000000455 INF: FPGA: Recv ZDACR 28093
17-03-18 02:35:51.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:51.494 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:51.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:51.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.514 -07 000000512 INF: FPGA: Recv ZSGSRD 29311
17-03-18 02:35:51.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:51.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.524 -07 000000626 INF: FPGA: Recv ZSGSRD 29308
17-03-18 02:35:51.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.534 -07 000000579 INF: FPGA: Recv ZSGSRD 29314
17-03-18 02:35:51.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.544 -07 000000444 INF: FPGA: Recv ZSGSRD 29309
17-03-18 02:35:51.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.554 -07 000000561 INF: FPGA: Recv ZSGSRD 29308
17-03-18 02:35:51.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.564 -07 000000462 INF: FPGA: Recv ZSGSRD 29314
17-03-18 02:35:51.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.574 -07 000000626 INF: FPGA: Recv ZSGSRD 29302
17-03-18 02:35:51.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.584 -07 000000430 INF: FPGA: Recv ZSGSRD 29308
17-03-18 02:35:51.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.594 -07 000000626 INF: FPGA: Recv ZSGSRD 29311
17-03-18 02:35:51.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:51.604 -07 000000569 INF: FPGA: Recv ZSGSRD 29311
17-03-18 02:35:51.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:51.614 -07 000000512 INF: FPGA: Recv ZPIEZORD 24798
17-03-18 02:35:51.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:51.624 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.9 V.
17-03-18 02:35:51.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29310 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29310 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29302 (-127.8 uncal um), Max = 29314 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:35:51.624 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29310, posNoise = 4, negNoise = 8
17-03-18 02:35:51.624 -07 000000610 INF: Z Motor: After move to -0.128602, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:51.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:35:51.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:51.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:51.624 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:51.624 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:51.624 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:51.624 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:51.624 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:51.624 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:51.634 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:35:51.634 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:51.634 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:35:51.634 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:51.634 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:51.634 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:51.634 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:35:51.634 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:51.644 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:35:51.644 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:35:51.644 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:35:51.644 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:35:51.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28269 150\n [Camera]
17-03-18 02:35:51.844 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:52.244 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:52.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:52.244 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:52.244 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:52.244 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:35:52.244 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:52.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:52.244 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:52.244 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:52.244 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:35:52.434 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28269 781
17-03-18 02:35:52.584 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:52.624 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:35:52.624 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:35:52.624 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:52.624 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:52.634 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:35:52.634 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:35:52.634 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:35:52.634 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:52.634 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:52.634 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:35:52.774 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:52.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:52.894 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:52.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:52.894 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:52.894 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:52.894 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:52.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:52.904 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:52.904 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:52.974 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:35:52.974 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:52.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28269 150' command took 2 ms to send, 1321 ms to get response, and 1325 ms overall
17-03-18 02:35:52.974 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:52.974 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.128617009886149. ------
17-03-18 02:35:52.974 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:52.974 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13530 mm
17-03-18 02:35:52.974 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:52.974 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:35:52.974 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:35:52.974 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29557, sync = True, waitForSettling = False)
17-03-18 02:35:52.974 -07 000000444 INF: Z Motor: Moving to -0.135303 mm, started at -0.128617 mm, distance = -6.69 um
17-03-18 02:35:52.984 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:52.984 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:35:52.984 -07 000000444 INF: FPGA: Xmit ZDACW 29557\n [Z Motor]
17-03-18 02:35:52.984 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:35:52.994 -07 000000444 INF: FPGA: 'ZDACW 29557' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:52.994 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:52.994 -07 000000455 INF: FPGA: Recv ZDACR 29557
17-03-18 02:35:53.004 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:53.004 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:53.004 -07 000000444 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 02:35:53.004 -07 000000590 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:35:53.014 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:53.014 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:35:53.014 -07 000000462 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:53.014 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:53.014 -07 000000462 INF: Y Motor: Moving 1351 steps-30
17-03-18 02:35:53.024 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:53.214 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:53.214 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 02:35:53.294 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:35:53.294 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:35:53.294 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:53.294 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:35:53.294 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:35:53.294 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:53.304 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:53.304 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:53.304 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:35:53.304 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:35:53.394 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:35:53.394 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:35:53.444 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:53.444 -07 000000512 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:35:53.454 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:53.454 -07 000000462 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:53.454 -07 000000462 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:35:53.454 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.182 mm/sec
17-03-18 02:35:54.404 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:54.404 -07 000000618 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:35:54.414 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:54.414 -07 000000462 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:54.434 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:54.434 -07 000000462 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:54.434 -07 000000462 INF: Y Motor: Moved to 71.5181 after 1458 ms (table move)
17-03-18 02:35:54.444 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135303 mm (DAC = 29557)
17-03-18 02:35:54.444 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.444 -07 000000579 INF: FPGA: Recv ZSGSRD 30350
17-03-18 02:35:54.454 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.454 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.454 -07 000000502 INF: FPGA: Recv ZSGSRD 30349
17-03-18 02:35:54.464 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.464 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.464 -07 000000606 INF: FPGA: Recv ZSGSRD 30365
17-03-18 02:35:54.474 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.474 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.474 -07 000000424 INF: FPGA: Recv ZSGSRD 30352
17-03-18 02:35:54.484 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.484 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.484 -07 000000501 INF: FPGA: Recv ZSGSRD 30348
17-03-18 02:35:54.494 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.494 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.494 -07 000000590 INF: FPGA: Recv ZSGSRD 30355
17-03-18 02:35:54.504 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.504 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.504 -07 000000502 INF: FPGA: Recv ZSGSRD 30345
17-03-18 02:35:54.514 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.514 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.514 -07 000000461 INF: FPGA: Recv ZSGSRD 30352
17-03-18 02:35:54.524 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.524 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.524 -07 000000424 INF: FPGA: Recv ZSGSRD 30349
17-03-18 02:35:54.534 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.534 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:54.534 -07 000000501 INF: FPGA: Recv ZSGSRD 30351
17-03-18 02:35:54.544 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.544 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:54.544 -07 000000455 INF: FPGA: Recv ZPIEZORD 26179
17-03-18 02:35:54.554 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:54.554 -07 000000430 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.510 V. Piezo Error = -9.2 V.
17-03-18 02:35:54.554 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30352 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30350 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30345 (-134.5 uncal um), Max = 30365 (-134.6 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:35:54.554 -07 000000430 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30352, posNoise = 13, negNoise = 7
17-03-18 02:35:54.554 -07 000000430 INF: Z Motor: After move to -0.135303, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:54.554 -07 000000430 INF: Z Motor: Settle wait time = 1461 ms, measure time = 109 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:35:54.554 -07 000000430 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:54.604 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:35:54.604 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:54.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:54.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:54.604 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:54.604 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:54.604 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:54.604 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:54.604 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:54.604 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:54.614 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:54.614 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:54.624 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:35:54.624 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:35:54.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:54.674 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:54.974 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:54.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:54.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:54.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:55.014 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:55.014 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:55.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 390 ms overall
17-03-18 02:35:55.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:35:55.094 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:55.094 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:35:55.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:35:55.114 -07 000000467 INF: Autofocus start
17-03-18 02:35:55.114 -07 000000467 INF: MeasureProfile start
17-03-18 02:35:55.114 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:55.114 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:55.124 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:55.124 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:55.124 -07 000000467 INF: MeasureProfile done
17-03-18 02:35:55.124 -07 000000467 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:35:55.124 -07 000000467 INF: Autofocus finished
17-03-18 02:35:55.274 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.981281,
17-03-18 02:35:55.324 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:55.324 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:55.324 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.135311038937864. ----------
17-03-18 02:35:55.324 -07 000000610 INF: Cycle	101	Tile	15	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:55.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28098, sync = True, waitForSettling = True)
17-03-18 02:35:55.334 -07 000000610 INF: Z Motor: Moving to -0.128624 mm, started at -0.135311 mm, distance = 6.69 um
17-03-18 02:35:55.334 -07 000000610 INF: FPGA: Xmit ZDACW 28098\n [Z Motor]
17-03-18 02:35:55.334 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:35:55.344 -07 000000610 INF: FPGA: 'ZDACW 28098' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:55.344 -07 000000444 INF: FPGA: Recv ZDACR 28098
17-03-18 02:35:55.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:55.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.504 -07 000000561 INF: FPGA: Recv ZSGSRD 29315
17-03-18 02:35:55.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:55.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.514 -07 000000606 INF: FPGA: Recv ZSGSRD 29317
17-03-18 02:35:55.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.524 -07 000000424 INF: FPGA: Recv ZSGSRD 29316
17-03-18 02:35:55.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.534 -07 000000569 INF: FPGA: Recv ZSGSRD 29304
17-03-18 02:35:55.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.544 -07 000000430 INF: FPGA: Recv ZSGSRD 29313
17-03-18 02:35:55.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.554 -07 000000444 INF: FPGA: Recv ZSGSRD 29320
17-03-18 02:35:55.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.564 -07 000000618 INF: FPGA: Recv ZSGSRD 29314
17-03-18 02:35:55.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.574 -07 000000424 INF: FPGA: Recv ZSGSRD 29316
17-03-18 02:35:55.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.584 -07 000000501 INF: FPGA: Recv ZSGSRD 29315
17-03-18 02:35:55.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:55.594 -07 000000512 INF: FPGA: Recv ZSGSRD 29312
17-03-18 02:35:55.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:55.604 -07 000000576 INF: FPGA: Recv ZPIEZORD 24825
17-03-18 02:35:55.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:55.614 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.8 V.
17-03-18 02:35:55.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29315 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29304 (-127.8 uncal um), Max = 29320 (-127.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:35:55.614 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 6, negNoise = 10
17-03-18 02:35:55.614 -07 000000610 INF: Z Motor: After move to -0.128624, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:55.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:35:55.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:55.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:55.614 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:55.614 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:55.614 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:55.614 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:55.614 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:55.614 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:55.614 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:35:55.614 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:55.614 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:55.614 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:55.614 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:55.614 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:55.624 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:35:55.624 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:55.624 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:35:55.624 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:35:55.634 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:35:55.634 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:35:55.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28275 150\n [Camera]
17-03-18 02:35:55.834 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:35:56.224 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:35:56.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:35:56.234 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:56.234 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:56.234 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:35:56.234 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:35:56.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:35:56.234 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:56.234 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:56.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:35:56.424 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28275 781
17-03-18 02:35:56.494 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:35:56.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:35:56.574 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:35:56.614 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:35:56.614 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:35:56.614 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:35:56.614 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:56.614 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:35:56.614 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:56.614 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:56.614 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:35:56.614 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:35:56.624 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:35:56.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:35:56.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:35:56.764 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:35:56.874 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:35:56.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:35:56.874 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:35:56.874 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:35:56.874 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:35:56.874 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:35:56.884 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:35:56.954 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:35:56.954 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:35:56.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28275 150' command took 2 ms to send, 1314 ms to get response, and 1321 ms overall
17-03-18 02:35:56.954 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:35:56.954 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.128642706734716. ------
17-03-18 02:35:56.954 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:56.954 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13496 mm
17-03-18 02:35:56.954 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:35:56.964 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:35:56.964 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29483, sync = True, waitForSettling = False)
17-03-18 02:35:56.964 -07 000000561 INF: Z Motor: Moving to -0.134965 mm, started at -0.128643 mm, distance = -6.32 um
17-03-18 02:35:56.964 -07 000000561 INF: FPGA: Xmit ZDACW 29483\n [Z Motor]
17-03-18 02:35:56.964 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:56.964 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:35:56.964 -07 000000576 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 02:35:56.964 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:35:56.974 -07 000000561 INF: FPGA: 'ZDACW 29483' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:56.974 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:56.974 -07 000000579 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:35:56.984 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:35:56.984 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:35:56.984 -07 000000576 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:56.984 -07 000000576 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:35:56.984 -07 000000576 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:35:56.994 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:56.994 -07 000000626 INF: FPGA: Recv ZDACR 29483
17-03-18 02:35:57.004 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:35:57.004 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:35:57.004 -07 000000561 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:35:57.184 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:35:57.184 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:35:57.274 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:35:57.274 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:35:57.274 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:57.274 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:35:57.274 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:35:57.274 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:57.274 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:57.274 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 02:35:57.284 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:35:57.284 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:35:57.374 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:35:57.374 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 02:35:57.424 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:57.424 -07 000000502 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:35:57.434 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:35:57.434 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:57.434 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:35:57.434 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.845 mm, average velocity = 2.165 mm/sec
17-03-18 02:35:58.384 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:35:58.384 -07 000000561 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:35:58.394 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:58.394 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:35:58.414 -07 000000576 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:35:58.414 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:35:58.414 -07 000000576 INF: Y Motor: Moved to 72.3491 after 1457 ms (table move)
17-03-18 02:35:58.424 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134965 mm (DAC = 29483)
17-03-18 02:35:58.424 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.424 -07 000000618 INF: FPGA: Recv ZSGSRD 30298
17-03-18 02:35:58.434 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:58.434 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.434 -07 000000606 INF: FPGA: Recv ZSGSRD 30302
17-03-18 02:35:58.444 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.444 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.444 -07 000000590 INF: FPGA: Recv ZSGSRD 30303
17-03-18 02:35:58.454 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.454 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.454 -07 000000501 INF: FPGA: Recv ZSGSRD 30305
17-03-18 02:35:58.464 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.464 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.464 -07 000000579 INF: FPGA: Recv ZSGSRD 30299
17-03-18 02:35:58.474 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.474 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.474 -07 000000618 INF: FPGA: Recv ZSGSRD 30303
17-03-18 02:35:58.484 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.484 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.484 -07 000000629 INF: FPGA: Recv ZSGSRD 30294
17-03-18 02:35:58.494 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.494 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.494 -07 000000590 INF: FPGA: Recv ZSGSRD 30298
17-03-18 02:35:58.504 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.504 -07 000000512 INF: FPGA: Recv ZSGSRD 30304
17-03-18 02:35:58.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:58.514 -07 000000606 INF: FPGA: Recv ZSGSRD 30296
17-03-18 02:35:58.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.524 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:58.524 -07 000000444 INF: FPGA: Recv ZPIEZORD 26130
17-03-18 02:35:58.534 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:58.534 -07 000000591 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.499 V. Piezo Error = -9.2 V.
17-03-18 02:35:58.534 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30300 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30300 (-134.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30294 (-134.1 uncal um), Max = 30305 (-134.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:35:58.534 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30300, posNoise = 5, negNoise = 6
17-03-18 02:35:58.534 -07 000000591 INF: Z Motor: After move to -0.134965, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:58.534 -07 000000591 INF: Z Motor: Settle wait time = 1460 ms, measure time = 109 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:35:58.534 -07 000000591 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:35:58.584 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:35:58.584 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:35:58.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:58.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:58.584 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:58.584 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:58.584 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:35:58.584 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:58.584 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:35:58.584 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:35:58.594 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:35:58.594 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:35:58.604 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:35:58.604 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:35:58.604 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:35:58.654 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:35:58.944 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:35:58.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:35:58.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:35:58.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:35:58.984 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:35:58.984 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:35:58.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:35:59.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:35:59.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:35:59.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:35:59.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:35:59.094 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:35:59.094 -07 000000502 INF: Autofocus start
17-03-18 02:35:59.094 -07 000000502 INF: MeasureProfile start
17-03-18 02:35:59.094 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:35:59.104 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:35:59.104 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:35:59.104 -07 000000502 INF: MeasureProfile done
17-03-18 02:35:59.104 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:35:59.104 -07 000000502 INF: Autofocus finished
17-03-18 02:35:59.304 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:35:59.304 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:35:59.304 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.134976979906492. ----------
17-03-18 02:35:59.304 -07 000000610 INF: Cycle	101	Tile	16	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:35:59.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27977, sync = True, waitForSettling = True)
17-03-18 02:35:59.314 -07 000000610 INF: Z Motor: Moving to -0.128070 mm, started at -0.134977 mm, distance = 6.91 um
17-03-18 02:35:59.314 -07 000000610 INF: FPGA: Xmit ZDACW 27977\n [Z Motor]
17-03-18 02:35:59.314 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:35:59.324 -07 000000610 INF: FPGA: 'ZDACW 27977' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:35:59.324 -07 000000512 INF: FPGA: Recv ZDACR 27977
17-03-18 02:35:59.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:35:59.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.484 -07 000000455 INF: FPGA: Recv ZSGSRD 29223
17-03-18 02:35:59.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:35:59.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.494 -07 000000467 INF: FPGA: Recv ZSGSRD 29230
17-03-18 02:35:59.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.504 -07 000000626 INF: FPGA: Recv ZSGSRD 29226
17-03-18 02:35:59.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29224
17-03-18 02:35:59.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.524 -07 000000430 INF: FPGA: Recv ZSGSRD 29221
17-03-18 02:35:59.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.534 -07 000000444 INF: FPGA: Recv ZSGSRD 29229
17-03-18 02:35:59.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:35:59.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.544 -07 000000502 INF: FPGA: Recv ZSGSRD 29227
17-03-18 02:35:59.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.554 -07 000000461 INF: FPGA: Recv ZSGSRD 29230
17-03-18 02:35:59.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.564 -07 000000629 INF: FPGA: Recv ZSGSRD 29226
17-03-18 02:35:59.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:35:59.574 -07 000000561 INF: FPGA: Recv ZSGSRD 29227
17-03-18 02:35:59.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:35:59.584 -07 000000455 INF: FPGA: Recv ZPIEZORD 24724
17-03-18 02:35:59.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:35:59.594 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.9 V.
17-03-18 02:35:59.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29226 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29226 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29221 (-127.3 uncal um), Max = 29230 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:35:59.594 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29226, posNoise = 4, negNoise = 5
17-03-18 02:35:59.594 -07 000000610 INF: Z Motor: After move to -0.128070, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:35:59.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:35:59.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:35:59.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:35:59.594 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:35:59.594 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:35:59.594 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:35:59.594 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:35:59.594 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:35:59.594 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:35:59.594 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:35:59.594 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:35:59.594 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:35:59.594 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:35:59.604 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:35:59.604 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:35:59.604 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:35:59.604 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:35:59.604 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:35:59.604 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:35:59.614 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:35:59.614 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:35:59.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28154 150\n [Camera]
17-03-18 02:35:59.814 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:36:00.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:36:00.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:36:00.214 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:36:00.214 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:36:00.214 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:36:00.214 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:36:00.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:36:00.214 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:36:00.214 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:36:00.214 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:36:00.404 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28154 781
17-03-18 02:36:00.554 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:36:00.594 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:36:00.594 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:36:00.594 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:00.594 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:36:00.594 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:36:00.594 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:00.594 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:00.594 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:36:00.594 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:00.604 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:36:00.634 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 4.009895,
17-03-18 02:36:00.744 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:36:00.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:36:00.744 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:36:00.854 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:36:00.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:36:00.864 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:36:00.864 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:36:00.864 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:36:00.864 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:36:00.864 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:36:00.934 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:36:00.934 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:36:00.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28154 150' command took 2 ms to send, 1315 ms to get response, and 1321 ms overall
17-03-18 02:36:00.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:36:00.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128077376066241. ------
17-03-18 02:36:00.944 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:36:00.944 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13468 mm
17-03-18 02:36:00.944 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:36:00.944 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:36:00.944 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:36:00.944 -07 000000561 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:36:00.944 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29422, sync = True, waitForSettling = False)
17-03-18 02:36:00.944 -07 000000626 INF: Z Motor: Moving to -0.134685 mm, started at -0.128077 mm, distance = -6.61 um
17-03-18 02:36:00.954 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:00.954 -07 000000626 INF: FPGA: Xmit ZDACW 29422\n [Z Motor]
17-03-18 02:36:00.954 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:36:00.964 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:00.964 -07 000000626 INF: FPGA: 'ZDACW 29422' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:36:00.964 -07 000000591 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:36:00.974 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:36:00.974 -07 000000561 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:00.974 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:36:00.974 -07 000000561 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:36:00.974 -07 000000561 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:36:00.984 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:36:00.984 -07 000000430 INF: FPGA: Recv ZDACR 29422
17-03-18 02:36:00.994 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:36:00.994 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:36:00.994 -07 000000626 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:36:01.174 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:36:01.174 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 02:36:01.244 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:36:01.244 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:36:01.244 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:01.254 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:36:01.254 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:36:01.254 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:36:01.254 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:01.254 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:36:01.254 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 02:36:01.254 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:36:01.374 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:36:01.374 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 392 ms overall
17-03-18 02:36:01.414 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:01.414 -07 000000576 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:36:01.424 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:36:01.424 -07 000000561 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:01.424 -07 000000561 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 02:36:01.424 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.152 mm/sec
17-03-18 02:36:01.494 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:01.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:36:02.374 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:02.374 -07 000000444 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:36:02.384 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:36:02.384 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:02.404 -07 000000561 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:36:02.404 -07 000000561 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:36:02.404 -07 000000561 INF: Y Motor: Moved to 73.1758 after 1463 ms (table move)
17-03-18 02:36:02.414 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134685 mm (DAC = 29422)
17-03-18 02:36:02.414 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.414 -07 000000591 INF: FPGA: Recv ZSGSRD 30257
17-03-18 02:36:02.424 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:36:02.424 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.424 -07 000000444 INF: FPGA: Recv ZSGSRD 30255
17-03-18 02:36:02.434 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.434 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.434 -07 000000569 INF: FPGA: Recv ZSGSRD 30257
17-03-18 02:36:02.444 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.444 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.444 -07 000000576 INF: FPGA: Recv ZSGSRD 30255
17-03-18 02:36:02.454 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.454 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.454 -07 000000561 INF: FPGA: Recv ZSGSRD 30256
17-03-18 02:36:02.464 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.464 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.464 -07 000000512 INF: FPGA: Recv ZSGSRD 30256
17-03-18 02:36:02.474 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.474 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.474 -07 000000444 INF: FPGA: Recv ZSGSRD 30248
17-03-18 02:36:02.484 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.484 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.484 -07 000000569 INF: FPGA: Recv ZSGSRD 30253
17-03-18 02:36:02.494 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.494 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.494 -07 000000424 INF: FPGA: Recv ZSGSRD 30254
17-03-18 02:36:02.504 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.504 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:02.504 -07 000000561 INF: FPGA: Recv ZSGSRD 30255
17-03-18 02:36:02.514 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.514 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:36:02.514 -07 000000512 INF: FPGA: Recv ZPIEZORD 26049
17-03-18 02:36:02.524 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:02.524 -07 000000606 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -9.2 V.
17-03-18 02:36:02.524 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30255 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30255 (-133.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30248 (-133.9 uncal um), Max = 30257 (-133.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:36:02.524 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30255, posNoise = 2, negNoise = 7
17-03-18 02:36:02.524 -07 000000606 INF: Z Motor: After move to -0.134685, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:36:02.524 -07 000000606 INF: Z Motor: Settle wait time = 1466 ms, measure time = 111 ms (allowed 150 ms), total time = 1577 ms
17-03-18 02:36:02.524 -07 000000606 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:36:02.564 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:36:02.564 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:36:02.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:36:02.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:36:02.564 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:36:02.564 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:36:02.564 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:36:02.564 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:36:02.564 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:36:02.564 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:36:02.574 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:36:02.574 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:36:02.584 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:36:02.584 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:36:02.584 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:36:02.634 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:36:02.934 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:36:02.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:36:02.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:36:02.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:36:02.974 -07 000000591 INF: FPGA: Recv @CAMSNAP 381
17-03-18 02:36:02.974 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:36:02.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 02:36:03.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:36:03.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:03.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:36:03.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:36:03.074 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:36:03.074 -07 000000430 INF: Autofocus start
17-03-18 02:36:03.074 -07 000000430 INF: MeasureProfile start
17-03-18 02:36:03.074 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:36:03.084 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:36:03.084 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:36:03.084 -07 000000430 INF: MeasureProfile done
17-03-18 02:36:03.084 -07 000000430 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:36:03.084 -07 000000430 INF: Autofocus finished
17-03-18 02:36:03.284 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:36:03.284 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:36:03.284 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.134687890360113. ----------
17-03-18 02:36:03.294 -07 000000610 INF: Cycle	101	Tile	17	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:36:03.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27929, sync = True, waitForSettling = True)
17-03-18 02:36:03.294 -07 000000610 INF: Z Motor: Moving to -0.127851 mm, started at -0.134688 mm, distance = 6.84 um
17-03-18 02:36:03.294 -07 000000610 INF: FPGA: Xmit ZDACW 27929\n [Z Motor]
17-03-18 02:36:03.294 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:36:03.304 -07 000000610 INF: FPGA: 'ZDACW 27929' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:36:03.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:36:03.304 -07 000000455 INF: FPGA: Recv ZDACR 27929
17-03-18 02:36:03.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:36:03.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.464 -07 000000467 INF: FPGA: Recv ZSGSRD 29195
17-03-18 02:36:03.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:36:03.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.474 -07 000000618 INF: FPGA: Recv ZSGSRD 29200
17-03-18 02:36:03.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.484 -07 000000590 INF: FPGA: Recv ZSGSRD 29187
17-03-18 02:36:03.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.494 -07 000000629 INF: FPGA: Recv ZSGSRD 29187
17-03-18 02:36:03.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.504 -07 000000501 INF: FPGA: Recv ZSGSRD 29193
17-03-18 02:36:03.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.514 -07 000000591 INF: FPGA: Recv ZSGSRD 29194
17-03-18 02:36:03.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.524 -07 000000618 INF: FPGA: Recv ZSGSRD 29191
17-03-18 02:36:03.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.534 -07 000000606 INF: FPGA: Recv ZSGSRD 29193
17-03-18 02:36:03.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.544 -07 000000512 INF: FPGA: Recv ZSGSRD 29189
17-03-18 02:36:03.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:03.554 -07 000000569 INF: FPGA: Recv ZSGSRD 29197
17-03-18 02:36:03.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:36:03.564 -07 000000455 INF: FPGA: Recv ZPIEZORD 24696
17-03-18 02:36:03.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:03.574 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.9 V.
17-03-18 02:36:03.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29193 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29193 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29187 (-127.1 uncal um), Max = 29200 (-127.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:36:03.574 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29193, posNoise = 7, negNoise = 6
17-03-18 02:36:03.574 -07 000000610 INF: Z Motor: After move to -0.127851, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:36:03.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:36:03.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:36:03.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:36:03.574 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:36:03.574 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:36:03.574 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:36:03.574 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:36:03.574 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:36:03.574 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:36:03.574 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:36:03.574 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:36:03.574 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:36:03.574 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:36:03.574 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:36:03.574 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:36:03.574 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:36:03.574 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:36:03.584 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:36:03.584 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:36:03.594 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:36:03.594 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:36:03.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28106 150\n [Camera]
17-03-18 02:36:03.794 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:36:04.194 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:36:04.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:36:04.194 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:36:04.194 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:36:04.194 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:36:04.194 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:36:04.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:36:04.194 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:36:04.194 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:36:04.194 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:36:04.384 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28106 781
17-03-18 02:36:04.534 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:36:04.564 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:36:04.564 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:36:04.564 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:04.564 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:36:04.564 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:36:04.564 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:04.574 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:04.574 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:04.574 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:36:04.574 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:36:04.724 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:36:04.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:36:04.724 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:36:04.834 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:36:04.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:36:04.834 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:36:04.844 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:36:04.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:36:04.844 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:36:04.844 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:36:04.914 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:36:04.914 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:36:04.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28106 150' command took 2 ms to send, 1315 ms to get response, and 1321 ms overall
17-03-18 02:36:04.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:36:04.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.127865377065563. ------
17-03-18 02:36:04.924 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:36:04.924 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13418 mm
17-03-18 02:36:04.924 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:36:04.924 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:36:04.924 -07 000000455 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 02:36:04.924 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:36:04.924 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 29312, sync = True, waitForSettling = False)
17-03-18 02:36:04.924 -07 000000467 INF: Z Motor: Moving to -0.134182 mm, started at -0.127865 mm, distance = -6.32 um
17-03-18 02:36:04.934 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:04.934 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:04.934 -07 000000462 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:36:04.944 -07 000000467 INF: FPGA: Xmit ZDACW 29312\n [Z Motor]
17-03-18 02:36:04.944 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:36:04.944 -07 000000455 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:04.944 -07 000000455 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:36:04.944 -07 000000455 INF: Y Motor: Moving 1355 steps-35
17-03-18 02:36:04.944 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:36:04.954 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:36:04.954 -07 000000467 INF: FPGA: 'ZDACW 29312' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:36:04.964 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:36:04.974 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:36:04.974 -07 000000461 INF: FPGA: Recv ZDACR 29312
17-03-18 02:36:04.984 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:36:04.984 -07 000000467 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:36:05.154 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:36:05.154 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:36:05.234 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:36:05.234 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:36:05.234 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:05.234 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:36:05.234 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:36:05.234 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:05.244 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:05.244 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 02:36:05.244 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:05.254 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:36:05.334 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:36:05.334 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:36:05.374 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:05.374 -07 000000629 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:36:05.384 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:36:05.384 -07 000000455 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:05.384 -07 000000455 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:36:05.384 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 02:36:06.014 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.974486,
17-03-18 02:36:06.334 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:06.334 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:36:06.344 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.344 -07 000000455 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:06.374 -07 000000455 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:36:06.374 -07 000000455 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:36:06.374 -07 000000455 INF: Y Motor: Moved to 74.0078 after 1446 ms (table move)
17-03-18 02:36:06.374 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134182 mm (DAC = 29312)
17-03-18 02:36:06.374 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.374 -07 000000591 INF: FPGA: Recv ZSGSRD 30186
17-03-18 02:36:06.384 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:36:06.384 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.384 -07 000000467 INF: FPGA: Recv ZSGSRD 30178
17-03-18 02:36:06.394 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.394 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.394 -07 000000462 INF: FPGA: Recv ZSGSRD 30179
17-03-18 02:36:06.404 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.404 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.404 -07 000000576 INF: FPGA: Recv ZSGSRD 30182
17-03-18 02:36:06.414 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.414 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.414 -07 000000626 INF: FPGA: Recv ZSGSRD 30182
17-03-18 02:36:06.424 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.424 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.424 -07 000000591 INF: FPGA: Recv ZSGSRD 30181
17-03-18 02:36:06.434 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.434 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.434 -07 000000606 INF: FPGA: Recv ZSGSRD 30171
17-03-18 02:36:06.444 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.444 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.444 -07 000000462 INF: FPGA: Recv ZSGSRD 30174
17-03-18 02:36:06.454 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.454 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.454 -07 000000618 INF: FPGA: Recv ZSGSRD 30184
17-03-18 02:36:06.464 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.464 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:06.464 -07 000000461 INF: FPGA: Recv ZSGSRD 30176
17-03-18 02:36:06.474 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.474 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:36:06.474 -07 000000591 INF: FPGA: Recv ZPIEZORD 25989
17-03-18 02:36:06.484 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:06.484 -07 000000590 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.473 V. Piezo Error = -9.2 V.
17-03-18 02:36:06.484 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30179 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30180 (-133.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30171 (-133.4 uncal um), Max = 30186 (-133.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:36:06.484 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30179, posNoise = 7, negNoise = 8
17-03-18 02:36:06.484 -07 000000590 INF: Z Motor: After move to -0.134182, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:36:06.484 -07 000000590 INF: Z Motor: Settle wait time = 1449 ms, measure time = 108 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:36:06.484 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:36:06.494 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:06.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:36:06.534 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 02:36:06.534 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:36:06.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:36:06.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:36:06.534 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:36:06.534 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:36:06.534 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:36:06.534 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:36:06.534 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:36:06.534 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:36:06.544 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:36:06.544 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:36:06.554 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:36:06.554 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:36:06.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:36:06.604 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:36:06.904 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:36:06.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:36:06.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:36:06.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:36:06.944 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:36:06.944 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:36:06.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:36:07.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:36:07.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:07.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:36:07.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:36:07.044 -07 000000467 INF: Autofocus start
17-03-18 02:36:07.044 -07 000000467 INF: MeasureProfile start
17-03-18 02:36:07.044 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:36:07.044 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:36:07.054 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:36:07.054 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:36:07.054 -07 000000467 INF: MeasureProfile done
17-03-18 02:36:07.054 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:36:07.054 -07 000000467 INF: Autofocus finished
17-03-18 02:36:07.254 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:36:07.254 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:36:07.254 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.134199650237339. ----------
17-03-18 02:36:07.254 -07 000000610 INF: Cycle	101	Tile	18	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:36:07.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27836, sync = True, waitForSettling = True)
17-03-18 02:36:07.264 -07 000000610 INF: Z Motor: Moving to -0.127425 mm, started at -0.134200 mm, distance = 6.77 um
17-03-18 02:36:07.264 -07 000000610 INF: FPGA: Xmit ZDACW 27836\n [Z Motor]
17-03-18 02:36:07.264 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:36:07.274 -07 000000610 INF: FPGA: 'ZDACW 27836' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:36:07.274 -07 000000591 INF: FPGA: Recv ZDACR 27836
17-03-18 02:36:07.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:36:07.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.434 -07 000000606 INF: FPGA: Recv ZSGSRD 29126
17-03-18 02:36:07.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.444 -07 000000569 INF: FPGA: Recv ZSGSRD 29126
17-03-18 02:36:07.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.454 -07 000000590 INF: FPGA: Recv ZSGSRD 29124
17-03-18 02:36:07.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.464 -07 000000467 INF: FPGA: Recv ZSGSRD 29121
17-03-18 02:36:07.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.474 -07 000000455 INF: FPGA: Recv ZSGSRD 29129
17-03-18 02:36:07.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.484 -07 000000579 INF: FPGA: Recv ZSGSRD 29125
17-03-18 02:36:07.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.494 -07 000000462 INF: FPGA: Recv ZSGSRD 29126
17-03-18 02:36:07.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.504 -07 000000591 INF: FPGA: Recv ZSGSRD 29129
17-03-18 02:36:07.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.514 -07 000000467 INF: FPGA: Recv ZSGSRD 29131
17-03-18 02:36:07.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:07.524 -07 000000502 INF: FPGA: Recv ZSGSRD 29128
17-03-18 02:36:07.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:36:07.534 -07 000000424 INF: FPGA: Recv ZPIEZORD 24644
17-03-18 02:36:07.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:07.544 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -9.8 V.
17-03-18 02:36:07.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29126 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29126 (-126.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29121 (-126.6 uncal um), Max = 29131 (-126.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:36:07.544 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29126, posNoise = 5, negNoise = 5
17-03-18 02:36:07.544 -07 000000610 INF: Z Motor: After move to -0.127425, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:36:07.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:36:07.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:36:07.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:36:07.544 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:36:07.544 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:36:07.544 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:36:07.544 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:36:07.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:36:07.544 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:36:07.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:36:07.544 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:36:07.544 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:36:07.544 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:36:07.554 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:36:07.554 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:36:07.554 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:36:07.554 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:36:07.564 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:36:07.564 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:36:07.564 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:36:07.564 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:36:07.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 28013 150\n [Camera]
17-03-18 02:36:07.764 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:36:08.164 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:36:08.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:36:08.164 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:36:08.164 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:36:08.164 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:36:08.164 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:36:08.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:36:08.164 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:36:08.164 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:36:08.164 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:36:08.354 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28013 781
17-03-18 02:36:08.504 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:36:08.544 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:36:08.544 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:36:08.544 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:08.544 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:36:08.544 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:36:08.544 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:08.544 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:08.544 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:08.544 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:36:08.554 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:36:08.694 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1121
17-03-18 02:36:08.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1121
17-03-18 02:36:08.694 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:36:08.814 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1121
17-03-18 02:36:08.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1121
17-03-18 02:36:08.814 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:36:08.814 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:36:08.814 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:36:08.814 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:36:08.814 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:36:08.884 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1313
17-03-18 02:36:08.884 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:36:08.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 28013 150' command took 2 ms to send, 1308 ms to get response, and 1321 ms overall
17-03-18 02:36:08.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:36:08.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.127434954852065. ------
17-03-18 02:36:08.894 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13333 mm
17-03-18 02:36:08.894 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:36:08.894 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:36:08.894 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:36:08.894 -07 000000591 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 02:36:08.894 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 29125, sync = True, waitForSettling = False)
17-03-18 02:36:08.894 -07 000000590 INF: Z Motor: Moving to -0.133326 mm, started at -0.127435 mm, distance = -5.89 um
17-03-18 02:36:08.894 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:36:08.904 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:36:08.904 -07 000000590 INF: FPGA: Xmit ZDACW 29125\n [Z Motor]
17-03-18 02:36:08.904 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:36:08.914 -07 000000590 INF: FPGA: 'ZDACW 29125' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:36:08.914 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:08.914 -07 000000579 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:36:08.924 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:36:08.924 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:36:08.924 -07 000000591 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:08.924 -07 000000591 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:36:08.924 -07 000000591 INF: Y Motor: Moving 1352 steps-30
17-03-18 02:36:08.934 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:36:08.934 -07 000000561 INF: FPGA: Recv ZDACR 29125
17-03-18 02:36:08.944 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:36:08.944 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:36:08.944 -07 000000590 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:36:09.124 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:36:09.124 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:36:09.214 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:36:09.214 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:36:09.214 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:09.214 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:36:09.214 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:36:09.214 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:09.214 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:09.214 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:09.214 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 02:36:09.224 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:36:09.314 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:36:09.314 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:36:09.344 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:09.344 -07 000000561 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:36:09.354 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:36:09.354 -07 000000591 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:09.354 -07 000000591 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 02:36:09.354 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.139 mm/sec
17-03-18 02:36:10.304 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:10.304 -07 000000606 INF: FPGA: Recv YRDPOS 153255
17-03-18 02:36:10.314 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.314 -07 000000591 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:10.324 -07 000000591 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:36:10.324 -07 000000591 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:36:10.324 -07 000000591 INF: Y Motor: Moved to 74.8315 after 1430 ms (table move)
17-03-18 02:36:10.334 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133326 mm (DAC = 29125)
17-03-18 02:36:10.334 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.334 -07 000000561 INF: FPGA: Recv ZSGSRD 30040
17-03-18 02:36:10.344 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:36:10.344 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.344 -07 000000606 INF: FPGA: Recv ZSGSRD 30046
17-03-18 02:36:10.354 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.354 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.354 -07 000000629 INF: FPGA: Recv ZSGSRD 30038
17-03-18 02:36:10.364 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.364 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.364 -07 000000467 INF: FPGA: Recv ZSGSRD 30043
17-03-18 02:36:10.374 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.374 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.374 -07 000000579 INF: FPGA: Recv ZSGSRD 30042
17-03-18 02:36:10.384 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.384 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.384 -07 000000569 INF: FPGA: Recv ZSGSRD 30048
17-03-18 02:36:10.394 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.394 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.394 -07 000000606 INF: FPGA: Recv ZSGSRD 30053
17-03-18 02:36:10.404 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.404 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.404 -07 000000618 INF: FPGA: Recv ZSGSRD 30043
17-03-18 02:36:10.414 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.414 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.414 -07 000000455 INF: FPGA: Recv ZSGSRD 30045
17-03-18 02:36:10.424 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.424 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:10.424 -07 000000512 INF: FPGA: Recv ZSGSRD 30040
17-03-18 02:36:10.434 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.434 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:36:10.434 -07 000000569 INF: FPGA: Recv ZPIEZORD 25865
17-03-18 02:36:10.444 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:10.444 -07 000000626 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.444 V. Piezo Error = -9.2 V.
17-03-18 02:36:10.444 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30044 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30043 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30038 (-132.5 uncal um), Max = 30053 (-132.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:36:10.444 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30044, posNoise = 9, negNoise = 6
17-03-18 02:36:10.444 -07 000000626 INF: Z Motor: After move to -0.133326, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:36:10.444 -07 000000626 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-18 02:36:10.444 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:36:10.494 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 02:36:10.494 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:36:10.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:36:10.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:36:10.494 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:36:10.494 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:36:10.494 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:36:10.494 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:36:10.494 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:36:10.494 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:36:10.504 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:36:10.504 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:36:10.514 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:36:10.514 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:36:10.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:36:10.564 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:36:10.864 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:36:10.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:36:10.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:36:10.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:36:10.904 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:36:10.904 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:36:10.904 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:36:10.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:36:10.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:10.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:36:10.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:36:11.004 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:36:11.004 -07 000000502 INF: Autofocus start
17-03-18 02:36:11.004 -07 000000502 INF: MeasureProfile start
17-03-18 02:36:11.004 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:36:11.014 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:36:11.014 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:36:11.014 -07 000000502 INF: MeasureProfile done
17-03-18 02:36:11.014 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:36:11.014 -07 000000502 INF: Autofocus finished
17-03-18 02:36:11.214 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:36:11.214 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:36:11.214 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.133332381598201. ----------
17-03-18 02:36:11.224 -07 000000610 INF: Cycle	101	Tile	19	Exposure Settings		A	396	G	190	T	190	C	396
17-03-18 02:36:11.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27649, sync = True, waitForSettling = True)
17-03-18 02:36:11.224 -07 000000610 INF: Z Motor: Moving to -0.126569 mm, started at -0.133332 mm, distance = 6.76 um
17-03-18 02:36:11.224 -07 000000610 INF: FPGA: Xmit ZDACW 27649\n [Z Motor]
17-03-18 02:36:11.224 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:36:11.234 -07 000000610 INF: FPGA: 'ZDACW 27649' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:36:11.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:36:11.234 -07 000000590 INF: FPGA: Recv ZDACR 27649
17-03-18 02:36:11.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:36:11.374 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.977204,
17-03-18 02:36:11.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.394 -07 000000590 INF: FPGA: Recv ZSGSRD 28996
17-03-18 02:36:11.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:36:11.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.404 -07 000000461 INF: FPGA: Recv ZSGSRD 28994
17-03-18 02:36:11.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.434 -07 000000430 INF: FPGA: Recv ZSGSRD 28992
17-03-18 02:36:11.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:36:11.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.444 -07 000000444 INF: FPGA: Recv ZSGSRD 28989
17-03-18 02:36:11.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.454 -07 000000424 INF: FPGA: Recv ZSGSRD 28994
17-03-18 02:36:11.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.464 -07 000000626 INF: FPGA: Recv ZSGSRD 28994
17-03-18 02:36:11.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.474 -07 000000618 INF: FPGA: Recv ZSGSRD 28991
17-03-18 02:36:11.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.484 -07 000000576 INF: FPGA: Recv ZSGSRD 28987
17-03-18 02:36:11.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.494 -07 000000455 INF: FPGA: Recv ZSGSRD 28992
17-03-18 02:36:11.494 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:11.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 100. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:36:11.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:36:11.504 -07 000000501 INF: FPGA: Recv ZSGSRD 28989
17-03-18 02:36:11.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:36:11.514 -07 000000626 INF: FPGA: Recv ZPIEZORD 24466
17-03-18 02:36:11.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:11.524 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.219 V. Piezo Error = -9.9 V.
17-03-18 02:36:11.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28992 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28992 (-125.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 28987 (-125.8 uncal um), Max = 28996 (-125.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:36:11.524 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28992, posNoise = 4, negNoise = 5
17-03-18 02:36:11.524 -07 000000610 INF: Z Motor: After move to -0.126569, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:36:11.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-18 02:36:11.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:36:11.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:36:11.524 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:36:11.524 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:36:11.524 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:36:11.524 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:36:11.524 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:36:11.524 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:36:11.524 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:36:11.524 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:36:11.524 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:36:11.524 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:36:11.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:36:11.534 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:36:11.534 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:36:11.534 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:36:11.534 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:36:11.534 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:36:11.544 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:36:11.544 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:36:11.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 396 396 190 190 27826 150\n [Camera]
17-03-18 02:36:11.744 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:36:12.144 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 588
17-03-18 02:36:12.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 588
17-03-18 02:36:12.144 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:36:12.144 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:36:12.144 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:36:12.144 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 588
17-03-18 02:36:12.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 588
17-03-18 02:36:12.144 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:36:12.144 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:36:12.144 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:36:12.334 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27826 781
17-03-18 02:36:12.484 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 931
17-03-18 02:36:12.514 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:36:12.514 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:36:12.524 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:12.524 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:36:12.524 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:36:12.524 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:12.524 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:12.524 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:36:12.524 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:36:12.534 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:36:12.674 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1122
17-03-18 02:36:12.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1122
17-03-18 02:36:12.674 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:36:12.794 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1122
17-03-18 02:36:12.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1122
17-03-18 02:36:12.794 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:36:12.794 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:36:12.794 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:36:12.794 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:36:12.794 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:36:12.864 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1314
17-03-18 02:36:12.864 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:36:12.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 396 396 190 190 27826 150' command took 2 ms to send, 1316 ms to get response, and 1321 ms overall
17-03-18 02:36:13.194 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:36:13.194 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:36:13.194 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:13.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:36:13.194 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:36:13.194 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:36:13.194 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:36:13.194 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:36:13.194 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 02:36:13.194 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:36:13.204 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:36:13.244 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:36:13.244 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:36:13.284 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:36:13.294 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-18 02:36:13.294 -07 000000610 INF: Imaging Cycle 101: ScanTilesCommand Cycle 101 time end. Duration was 161387 ms.
17-03-18 02:36:13.294 -07 000000610 INF: =================== Cycle #101 ===================
17-03-18 02:36:13.294 -07 000000610 INF: ===================  ===================
17-03-18 02:36:13.294 -07 000000455 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:36:13.304 -07 000000462 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 02:36:13.304 -07 000000455 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:36:13.304 -07 000000455 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 02:36:13.304 -07 000000455 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 101, FrontChillerTemperature: 3.977204, FrontChillerHeatSinkTemperature: 0.485279, AmbientTemperature: 18.71475, FlowCellCompartmentTemperature: 21.98528, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.43948, GreenLEDSensorTemperature: 27.07715, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 02:36:13.384 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.