17-03-18 02:36:13.434 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:36:13.434 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:36:13.434 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-18 02:36:13.434 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:13.444 -07 000000467 INF: FPGA: Recv YRDPOS 153255
17-03-18 02:36:13.444 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:36:13.444 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:13.444 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:36:13.444 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:36:13.444 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:36:13.554 -07 000000606 INF: FPGA: Recv YMVTO 154379 879
17-03-18 02:36:13.564 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 118 ms overall
17-03-18 02:36:13.564 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 02:36:13.564 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 879 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 02:36:13.564 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.653 mm/sec
17-03-18 02:36:16.494 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:16.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1510, R2=1574, Total=3084. Warn if over 250 bubbles per interval.
17-03-18 02:36:16.564 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:36:16.564 -07 000000590 INF: FPGA: Recv YRDPOS 154387
17-03-18 02:36:16.574 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:36:16.574 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:36:16.594 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:36:16.594 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 02:36:16.594 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3159 ms
17-03-18 02:36:16.604 -07 000000610 INF: =================== Cycle #102, Flow Cell Temp 60° ===================
17-03-18 02:36:16.604 -07 000000610 INF: =================== Cycle #102, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:36:16.604 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 02:36:16.604 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:36:16.614 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:36:16.614 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:36:16.614 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-18 02:36:16.624 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:16.624 -07 000000610 INF: =================== Cycle #102, Flow Cell Temp 60° ===================
17-03-18 02:36:16.624 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:36:16.624 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:36:16.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:16.654 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:36:16.654 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:36:16.654 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:36:16.754 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.02213,
17-03-18 02:36:16.954 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:36:16.974 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:36:16.974 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:36:17.024 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:17.044 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:36:17.044 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:36:17.144 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:36:17.144 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:36:17.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:17.174 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:36:17.174 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:36:17.174 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:36:17.304 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:36:17.344 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:20.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:20.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:20.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:20.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:21.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:21.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:21.404 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:36:21.404 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:36:21.494 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 4
17-03-18 02:36:21.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=4, R2=5, Total=9. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:36:21.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:21.564 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:36:21.564 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:36:21.694 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:21.724 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:36:21.724 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:36:21.724 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:36:21.854 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:36:21.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:22.114 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.024884,
17-03-18 02:36:22.314 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:22.344 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:22.344 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:36:22.344 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:36:23.564 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:36:23.564 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:36:23.564 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:23.584 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:36:23.584 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:36:23.584 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:36:23.714 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:36:23.734 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:36:23.734 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:36:23.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:23.804 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:36:23.804 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:36:23.904 -07 000000610 INF: =================== Cycle #102, Pumping Reagent CMS (4) ===================
17-03-18 02:36:23.904 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:36:23.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:23.934 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:36:23.934 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:36:23.934 -07 000000610 INF: =================== Cycle #102, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:36:24.064 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:36:24.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:25.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:25.574 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:25.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:26.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:26.024 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:36:26.024 -07 000000610 INF: =================== Cycle #102, Pumping Reagent CMS (4) ===================
17-03-18 02:36:26.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:26.184 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:36:26.184 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:36:26.314 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:26.344 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:36:26.344 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:36:26.344 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:36:26.474 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:36:26.494 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:26.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:36:26.504 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:26.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:26.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:26.964 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:36:26.964 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:36:27.494 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.023489,
17-03-18 02:36:28.184 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:36:28.184 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:36:28.184 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:28.204 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:36:28.204 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:36:28.204 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:36:28.354 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:36:28.374 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:36:28.374 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:36:28.424 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:28.444 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:36:28.444 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:36:28.544 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:36:28.544 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:36:28.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:28.574 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:36:28.574 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:36:28.574 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:36:28.704 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:36:28.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:29.614 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:29.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:29.644 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:36:29.644 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:36:29.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:29.804 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:36:29.804 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:36:29.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:29.964 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:36:29.964 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:36:29.964 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:36:30.094 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:36:30.124 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:30.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:30.584 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:30.584 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:36:30.584 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:36:30.584 -07 000000561 INF: WaitCommand(10000) start
17-03-18 02:36:30.584 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:36:30.584 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:36:31.494 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:31.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:36:31.804 -07 000000501 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:36:31.804 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-18 02:36:31.834 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:36:31.834 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:36:31.964 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:36:32.004 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:32.854 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.001704,
17-03-18 02:36:33.534 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:33.564 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:33.984 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:34.014 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:34.014 -07 000000501 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:36:34.014 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:36:34.014 -07 000000501 INF: ===================  ===================
17-03-18 02:36:36.494 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:36.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:36:38.234 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.030322,
17-03-18 02:36:40.594 -07 000000561 INF: WaitCommand(10000) end
17-03-18 02:36:40.594 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:36:40.594 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:36:40.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:40.634 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:36:40.634 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:36:40.634 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:36:40.764 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:36:40.804 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:41.494 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:41.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:36:43.594 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.005817,
17-03-18 02:36:46.494 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:46.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:36:46.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:46.964 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:47.384 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:47.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:47.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:47.864 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:48.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:48.314 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:48.734 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:48.764 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:48.764 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:36:48.764 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:36:48.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:48.924 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:36:48.924 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:36:48.964 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.96762,
17-03-18 02:36:49.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:49.084 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:36:49.084 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:36:49.084 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:36:49.214 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:36:49.244 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:49.674 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:49.704 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:49.704 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:36:49.704 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:36:50.924 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:36:50.924 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:36:50.924 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:50.944 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:36:50.944 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:36:50.944 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:36:51.154 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:36:51.174 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:36:51.174 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:36:51.224 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:51.244 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:36:51.244 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:36:51.344 -07 000000610 INF: =================== Cycle #102, Pumping Reagent IMT (1) ===================
17-03-18 02:36:51.344 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:36:51.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:51.374 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:36:51.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:36:51.374 -07 000000610 INF: =================== Cycle #102, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:36:51.494 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:51.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:36:51.504 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:36:51.544 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:52.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:53.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:53.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:53.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:53.464 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 02:36:53.464 -07 000000610 INF: =================== Cycle #102, Pumping Reagent IMT (1) ===================
17-03-18 02:36:53.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:53.624 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:36:53.624 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:36:53.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:53.784 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:36:53.784 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:36:53.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:36:53.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:36:53.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:54.344 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.975845,
17-03-18 02:36:54.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:54.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:54.404 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:36:54.404 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:36:55.624 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:36:55.624 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:36:55.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:55.644 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:36:55.644 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:36:55.644 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:36:55.874 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:36:55.894 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:36:55.894 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:36:55.944 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:36:55.964 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:36:55.964 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:36:56.064 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:36:56.064 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:36:56.064 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:56.094 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:36:56.094 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:36:56.094 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:36:56.224 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:36:56.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:36:56.494 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:36:56.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:36:57.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:57.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:57.164 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:36:57.164 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:36:57.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:57.324 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:36:57.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:36:57.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:36:57.484 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:36:57.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:36:57.484 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:36:57.614 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:36:57.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:58.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:36:58.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:36:58.104 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:36:58.104 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:36:58.104 -07 000000610 INF: =================== Cycle #102, Flow Cell Temp 65° ===================
17-03-18 02:36:58.104 -07 000000610 INF: =================== Cycle #102, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:36:58.104 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:36:58.104 -07 000000590 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:36:58.114 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:36:58.114 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:36:58.114 -07 000000626 INF: FPGA: Recv TEC2EN 
17-03-18 02:36:58.124 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:36:58.124 -07 000000610 INF: =================== Cycle #102, Flow Cell Temp 65° ===================
17-03-18 02:36:58.124 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:36:58.124 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:36:59.704 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.981281,
17-03-18 02:37:01.494 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:01.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:05.074 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.969015,
17-03-18 02:37:06.494 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:06.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:10.444 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.983999,
17-03-18 02:37:11.494 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:11.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:15.814 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.020806,
17-03-18 02:37:16.494 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:16.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:21.194 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.023489,
17-03-18 02:37:21.494 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:21.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:26.494 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:26.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:26.554 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.001704,
17-03-18 02:37:28.134 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:37:28.134 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:37:28.134 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:37:28.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:37:28.264 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:37:28.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:37:28.264 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:37:28.394 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:37:28.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:37:28.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:37:29.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:37:29.004 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 02:37:29.004 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:37:29.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:37:29.164 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:37:29.164 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:37:29.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:37:29.324 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:37:29.324 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:37:29.324 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:37:29.454 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:37:29.484 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:37:29.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:37:29.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:37:29.944 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:37:29.944 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:37:29.944 -07 000000590 INF: WaitCommand(30000) start
17-03-18 02:37:29.944 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:37:29.944 -07 000000576 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:37:31.164 -07 000000576 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:37:31.164 -07 000000576 INF: LanePump: Xmit /1?\r
17-03-18 02:37:31.204 -07 000000576 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:37:31.204 -07 000000576 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:37:31.334 -07 000000576 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:37:31.374 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:37:31.494 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:31.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:31.924 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.005817,
17-03-18 02:37:33.714 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-18 02:37:33.744 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:37:34.164 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-18 02:37:34.194 -07 000000576 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:37:34.194 -07 000000576 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 02:37:34.194 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:37:34.194 -07 000000576 INF: ===================  ===================
17-03-18 02:37:36.494 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:36.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:37.304 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.011254,
17-03-18 02:37:41.494 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:41.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:42.664 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.988112,
17-03-18 02:37:46.494 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:46.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:48.044 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.994908,
17-03-18 02:37:51.494 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:51.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:53.404 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.989471,
17-03-18 02:37:56.494 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:37:56.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:37:58.784 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.988112,
17-03-18 02:37:59.954 -07 000000590 INF: WaitCommand(30000) end
17-03-18 02:37:59.954 -07 000000610 INF: =================== Cycle #102, Flow Cell Temp 22° ===================
17-03-18 02:37:59.954 -07 000000610 INF: =================== Cycle #102, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:37:59.954 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 02:37:59.964 -07 000000629 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:37:59.964 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:37:59.964 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:37:59.964 -07 000000591 INF: FPGA: Recv TEC2EN 
17-03-18 02:37:59.974 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:37:59.974 -07 000000610 INF: =================== Cycle #102, Flow Cell Temp 22° ===================
17-03-18 02:37:59.974 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:37:59.974 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:37:59.974 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:37:59.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:38:00.004 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:38:00.004 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:38:00.004 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:38:00.134 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:38:00.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:38:01.494 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:38:01.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1514, R2=1579, Total=3093. Warn if over 250 bubbles per interval.
17-03-18 02:38:03.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:03.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:38:03.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:03.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:38:04.144 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.994908,
17-03-18 02:38:04.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:04.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:04.234 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:38:04.234 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:38:04.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:38:04.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:38:04.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:38:04.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:38:04.554 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:38:04.554 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:38:04.554 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:38:04.684 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:38:04.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:05.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:05.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:05.174 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:38:05.174 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:38:06.394 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:38:06.394 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:38:06.394 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:38:06.414 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:38:06.414 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:38:06.414 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:38:06.494 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:38:06.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1515, R2=1580, Total=3095. Warn if over 250 bubbles per interval.
17-03-18 02:38:06.564 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:38:06.584 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:38:06.584 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:38:06.634 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:38:06.654 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:38:06.654 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:38:06.754 -07 000000610 INF: =================== Cycle #102, Pumping Reagent USM (2) ===================
17-03-18 02:38:06.754 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:38:06.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:38:06.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:38:06.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:38:06.784 -07 000000610 INF: =================== Cycle #102, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:38:06.914 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:38:06.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:38:08.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:08.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:38:08.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:08.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:08.874 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:38:08.874 -07 000000610 INF: =================== Cycle #102, Pumping Reagent USM (2) ===================
17-03-18 02:38:09.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:38:09.034 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:38:09.034 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:38:09.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:38:09.194 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:38:09.194 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:38:09.194 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:38:09.324 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:38:09.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:09.514 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.024884,
17-03-18 02:38:09.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:09.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:09.814 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:38:09.814 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:38:11.034 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 02:38:11.034 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:38:11.034 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:38:11.054 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:38:11.054 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:38:11.054 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:38:11.204 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:38:11.224 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:38:11.224 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:38:11.274 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:38:11.294 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:38:11.294 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:38:11.394 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:38:11.394 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:38:11.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:38:11.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:38:11.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:38:11.424 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:38:11.494 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:38:11.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1516, R2=1581, Total=3097. Warn if over 250 bubbles per interval.
17-03-18 02:38:11.554 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:38:11.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:38:12.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:12.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:12.494 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:38:12.494 -07 000000610 INF: =================== Cycle #102, Pumping Reagent PR2 (3) ===================
17-03-18 02:38:12.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:38:12.654 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:38:12.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:38:12.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:38:12.814 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:38:12.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:38:12.814 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:38:12.944 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:38:12.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:13.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:13.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:13.434 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:38:13.434 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:38:13.434 -07 000000444 INF: WaitCommand(10000) start
17-03-18 02:38:13.434 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:38:13.434 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:38:14.654 -07 000000512 INF: AsyncDelayTimer waited 1214ms
17-03-18 02:38:14.654 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 02:38:14.684 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:38:14.684 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:38:14.814 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:38:14.854 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:38:14.884 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.014009,
17-03-18 02:38:16.384 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:16.414 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:38:16.494 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 4
17-03-18 02:38:16.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=4, R2=1, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1582, Total=3102. Warn if over 250 bubbles per interval.
17-03-18 02:38:16.834 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 02:38:16.864 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:38:16.864 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:38:16.864 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:38:16.864 -07 000000512 INF: ===================  ===================
17-03-18 02:38:20.264 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.009895,
17-03-18 02:38:21.494 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:38:21.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1583, Total=3103. Warn if over 250 bubbles per interval.
17-03-18 02:38:23.444 -07 000000444 INF: WaitCommand(10000) end
17-03-18 02:38:23.444 -07 000000610 INF: =================== Cycle #102, Imaging ===================
17-03-18 02:38:23.444 -07 000000610 INF: Imaging Cycle 102: ScanTilesCommand Cycle 102 time start.
17-03-18 02:38:23.444 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:38:23.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:38:23.474 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:38:23.474 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:38:23.474 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:38:23.774 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:38:23.794 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:38:23.794 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:38:23.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:38:23.864 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:38:23.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:23.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:23.864 -07 000000462 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:38:23.864 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:23.864 -07 000000462 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:38:23.864 -07 000000569 INF: FPGA: Recv EXLED1ON 
17-03-18 02:38:23.874 -07 000000462 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:38:23.874 -07 000000462 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:38:23.874 -07 000000501 INF: FPGA: Recv EXLED1ADCR 23139
17-03-18 02:38:23.884 -07 000000462 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:23.884 -07 000000462 INF: RedLED: Using Red data: Photodiode ADC 23139 --> 7.4 mW (old method), or 205.1 mW (new method). Difference = 197.7 mW
17-03-18 02:38:23.884 -07 000000462 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:38:23.884 -07 000000626 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:38:23.894 -07 000000462 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:23.894 -07 000000462 INF: RedLED: LED was on for 20 ms
17-03-18 02:38:23.894 -07 000000462 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 02:38:23.894 -07 000000462 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:38:23.894 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:23.894 -07 000000462 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:38:23.894 -07 000000569 INF: FPGA: Recv EXLED2ON 
17-03-18 02:38:23.904 -07 000000462 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:23.904 -07 000000462 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:38:23.904 -07 000000618 INF: FPGA: Recv EXLED1ADCR 2098
17-03-18 02:38:23.914 -07 000000462 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:23.914 -07 000000462 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-18 02:38:23.914 -07 000000462 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:38:23.914 -07 000000502 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:38:23.924 -07 000000462 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:23.924 -07 000000462 INF: GreenLED: LED was on for 19 ms
17-03-18 02:38:23.924 -07 000000462 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 02:38:23.924 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:38:23.924 -07 000000467 INF: FPGA: Recv EMCUR 
17-03-18 02:38:23.934 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:23.934 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:38:24.434 -07 000000444 INF: FPGA: Recv EMOUT
17-03-18 02:38:24.434 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:38:24.434 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:38:24.434 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 02:38:24.444 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:24.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:38:24.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126574110425069. ------
17-03-18 02:38:24.444 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:24.444 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17878 mm
17-03-18 02:38:24.444 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:38:24.454 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:38:24.454 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:24.454 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:38:24.454 -07 000000629 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 02:38:24.454 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:24.454 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 39055, sync = True, waitForSettling = False)
17-03-18 02:38:24.454 -07 000000430 INF: Z Motor: Moving to -0.178782 mm, started at -0.126574 mm, distance = -52.21 um
17-03-18 02:38:24.454 -07 000000576 INF: FPGA: Recv YRDPOS 154388
17-03-18 02:38:24.464 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:38:24.464 -07 000000629 INF: Y Motor: Encoder = 154388 = motor step 120615.6 = 75.3848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:24.464 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:38:24.464 -07 000000629 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:38:24.464 -07 000000629 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:38:24.474 -07 000000430 INF: FPGA: Xmit ZDACW 39055\n [Z Motor]
17-03-18 02:38:24.474 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:38:24.484 -07 000000430 INF: FPGA: 'ZDACW 39055' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:38:24.484 -07 000000629 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:38:24.494 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:24.494 -07 000000462 INF: FPGA: Recv ZDACR 39055
17-03-18 02:38:24.504 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:38:24.504 -07 000000430 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:38:24.664 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:38:24.664 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 02:38:25.624 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.004458,
17-03-18 02:38:26.164 -07 000000626 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 02:38:26.164 -07 000000629 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1679 ms to get response, and 1705 ms overall
17-03-18 02:38:26.164 -07 000000629 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:38:26.164 -07 000000629 INF: Y Motor: To move from 75.385 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 02:38:26.164 -07 000000629 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.472 mm, average velocity = 9.069 mm/sec
17-03-18 02:38:26.494 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:38:26.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:38:29.014 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:29.014 -07 000000424 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:38:29.024 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:29.024 -07 000000629 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:29.044 -07 000000629 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:38:29.044 -07 000000629 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 02:38:29.044 -07 000000629 INF: Y Motor: Moved to 59.9102 after 4597 ms
17-03-18 02:38:29.054 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178782 mm (DAC = 39055)
17-03-18 02:38:29.054 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.054 -07 000000576 INF: FPGA: Recv ZSGSRD 37122
17-03-18 02:38:29.064 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:38:29.064 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.064 -07 000000430 INF: FPGA: Recv ZSGSRD 37118
17-03-18 02:38:29.074 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.074 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.074 -07 000000591 INF: FPGA: Recv ZSGSRD 37119
17-03-18 02:38:29.084 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.084 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.084 -07 000000579 INF: FPGA: Recv ZSGSRD 37124
17-03-18 02:38:29.094 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.094 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.094 -07 000000512 INF: FPGA: Recv ZSGSRD 37118
17-03-18 02:38:29.104 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.104 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.104 -07 000000461 INF: FPGA: Recv ZSGSRD 37117
17-03-18 02:38:29.114 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.114 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.114 -07 000000430 INF: FPGA: Recv ZSGSRD 37123
17-03-18 02:38:29.124 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.124 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.124 -07 000000576 INF: FPGA: Recv ZSGSRD 37122
17-03-18 02:38:29.134 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.134 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.134 -07 000000590 INF: FPGA: Recv ZSGSRD 37117
17-03-18 02:38:29.144 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.144 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:29.144 -07 000000626 INF: FPGA: Recv ZSGSRD 37119
17-03-18 02:38:29.154 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.154 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:29.154 -07 000000461 INF: FPGA: Recv ZPIEZORD 33384
17-03-18 02:38:29.164 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.164 -07 000000561 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.959 V. Piezo Error = -8.3 V.
17-03-18 02:38:29.164 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37120 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37119 (-177.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37117 (-177.9 uncal um), Max = 37124 (-177.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:38:29.164 -07 000000561 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37120, posNoise = 4, negNoise = 3
17-03-18 02:38:29.164 -07 000000561 INF: Z Motor: After move to -0.178782, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:29.164 -07 000000561 INF: Z Motor: Settle wait time = 4599 ms, measure time = 109 ms (allowed 150 ms), total time = 4708 ms
17-03-18 02:38:29.164 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:38:29.214 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4761 ms
17-03-18 02:38:29.214 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:38:29.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:29.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:29.214 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:29.214 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:29.214 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:38:29.214 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:29.224 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:29.224 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:38:29.244 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 02:38:29.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:38:29.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:38:29.244 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:38:29.264 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:38:29.264 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 02:38:29.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:38:29.314 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:38:29.614 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:38:29.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:38:29.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:38:29.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-18 02:38:29.644 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:38:29.654 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:38:29.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 386 ms overall
17-03-18 02:38:29.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:38:29.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:29.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:38:29.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:38:29.754 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:29.754 -07 000000467 INF: Image SNR check: start
17-03-18 02:38:29.754 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:29.764 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:38:29.764 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:38:29.764 -07 000000467 INF: Image SNR check: pass  [peak (Max-Min)=158.59]
17-03-18 02:38:29.764 -07 000000467 INF: Autofocus start
17-03-18 02:38:29.764 -07 000000467 INF: MeasureProfile start
17-03-18 02:38:29.784 -07 000000467 INF: MeasureProfile done
17-03-18 02:38:29.784 -07 000000467 INF: X=-32  Z correction [um]=-0.2344
17-03-18 02:38:29.784 -07 000000467 INF: Autofocus finished
17-03-18 02:38:29.964 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:38:29.964 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:38:29.964 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178790106713302. ----------
17-03-18 02:38:29.964 -07 000000610 INF: Cycle	102	Tile	1	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:38:29.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37517, sync = True, waitForSettling = True)
17-03-18 02:38:29.974 -07 000000610 INF: Z Motor: Moving to -0.171742 mm, started at -0.178790 mm, distance = 7.05 um
17-03-18 02:38:29.974 -07 000000610 INF: FPGA: Xmit ZDACW 37517\n [Z Motor]
17-03-18 02:38:29.974 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:38:29.984 -07 000000610 INF: FPGA: 'ZDACW 37517' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:38:29.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:29.984 -07 000000606 INF: FPGA: Recv ZDACR 37517
17-03-18 02:38:29.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:29.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:38:30.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.144 -07 000000461 INF: FPGA: Recv ZSGSRD 36026
17-03-18 02:38:30.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:30.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.154 -07 000000579 INF: FPGA: Recv ZSGSRD 36028
17-03-18 02:38:30.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.164 -07 000000626 INF: FPGA: Recv ZSGSRD 36020
17-03-18 02:38:30.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.174 -07 000000502 INF: FPGA: Recv ZSGSRD 36026
17-03-18 02:38:30.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.184 -07 000000618 INF: FPGA: Recv ZSGSRD 36028
17-03-18 02:38:30.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.194 -07 000000512 INF: FPGA: Recv ZSGSRD 36023
17-03-18 02:38:30.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.204 -07 000000591 INF: FPGA: Recv ZSGSRD 36028
17-03-18 02:38:30.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.214 -07 000000626 INF: FPGA: Recv ZSGSRD 36019
17-03-18 02:38:30.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.224 -07 000000629 INF: FPGA: Recv ZSGSRD 36025
17-03-18 02:38:30.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:30.234 -07 000000569 INF: FPGA: Recv ZSGSRD 36026
17-03-18 02:38:30.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:30.244 -07 000000424 INF: FPGA: Recv ZPIEZORD 31894
17-03-18 02:38:30.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:30.254 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.725 V. Piezo Error = -9.1 V.
17-03-18 02:38:30.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36025 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36026 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36019 (-170.8 uncal um), Max = 36028 (-170.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:38:30.254 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36025, posNoise = 3, negNoise = 6
17-03-18 02:38:30.254 -07 000000610 INF: Z Motor: After move to -0.171742, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:30.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:38:30.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:30.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:30.254 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:30.254 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:30.254 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:38:30.254 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:38:30.254 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:30.254 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:38:30.254 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:30.254 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:38:30.254 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:38:30.254 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:38:30.264 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:38:30.264 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:38:30.274 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:38:30.274 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:38:30.284 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 02:38:30.284 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:38:30.284 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:38:30.284 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:38:30.294 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:38:30.294 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-18 02:38:30.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37693 150\n [Camera]
17-03-18 02:38:30.494 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:38:30.894 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:38:30.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:38:30.894 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:30.894 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:30.894 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1140442840, 0x0, 391868352) start.
17-03-18 02:38:30.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:38:30.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:38:30.904 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:31.014 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:31.014 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:38:31.024 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.001704,
17-03-18 02:38:31.084 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37693 782
17-03-18 02:38:31.234 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:38:31.294 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1140442840, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:38:31.294 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:38:31.294 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:31.294 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:38:31.294 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:38:31.414 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:38:31.414 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:38:31.414 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:31.414 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:38:31.424 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-18 02:38:31.424 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:38:31.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:38:31.434 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:31.434 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:38:31.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:38:31.434 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:31.434 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:31.434 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:38:31.434 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:31.434 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:38:31.494 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:38:31.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:38:31.624 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:38:31.624 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:38:31.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37693 150' command took 2 ms to send, 1311 ms to get response, and 1322 ms overall
17-03-18 02:38:31.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:38:31.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171755594418073. ------
17-03-18 02:38:31.624 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:31.624 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17772 mm
17-03-18 02:38:31.624 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:38:31.634 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:38:31.634 -07 000000579 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 02:38:31.634 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38823, sync = True, waitForSettling = False)
17-03-18 02:38:31.634 -07 000000461 INF: Z Motor: Moving to -0.177720 mm, started at -0.171756 mm, distance = -5.96 um
17-03-18 02:38:31.634 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:31.634 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:31.634 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 02:38:31.634 -07 000000626 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:38:31.644 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:38:31.644 -07 000000579 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:31.644 -07 000000579 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:38:31.644 -07 000000579 INF: Y Motor: Moving 1332 steps2
17-03-18 02:38:31.644 -07 000000461 INF: FPGA: Xmit ZDACW 38823\n [Z Motor]
17-03-18 02:38:31.644 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:38:31.654 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:38:31.654 -07 000000461 INF: FPGA: 'ZDACW 38823' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:38:31.664 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:38:31.674 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:31.674 -07 000000424 INF: FPGA: Recv ZDACR 38823
17-03-18 02:38:31.684 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:38:31.684 -07 000000461 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:38:31.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:38:31.834 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:38:31.834 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:31.834 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:31.844 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:38:31.844 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:38:31.844 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:31.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:38:31.844 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:31.854 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:38:31.854 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:38:31.854 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:38:32.034 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:38:32.034 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:38:32.074 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:32.074 -07 000000424 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:38:32.084 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:32.084 -07 000000579 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:32.084 -07 000000579 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:38:32.084 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 02:38:33.034 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:33.034 -07 000000501 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:38:33.044 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:33.044 -07 000000579 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:33.074 -07 000000579 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:38:33.074 -07 000000579 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:38:33.074 -07 000000579 INF: Y Motor: Moved to 60.7324 after 1439 ms (table move)
17-03-18 02:38:33.074 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177720 mm (DAC = 38823)
17-03-18 02:38:33.074 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.074 -07 000000467 INF: FPGA: Recv ZSGSRD 36960
17-03-18 02:38:33.084 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:38:33.084 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.084 -07 000000606 INF: FPGA: Recv ZSGSRD 36958
17-03-18 02:38:33.094 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.094 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.094 -07 000000430 INF: FPGA: Recv ZSGSRD 36952
17-03-18 02:38:33.104 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.104 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.104 -07 000000461 INF: FPGA: Recv ZSGSRD 36959
17-03-18 02:38:33.114 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.114 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.114 -07 000000626 INF: FPGA: Recv ZSGSRD 36956
17-03-18 02:38:33.124 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.124 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.124 -07 000000424 INF: FPGA: Recv ZSGSRD 36957
17-03-18 02:38:33.134 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.134 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.134 -07 000000444 INF: FPGA: Recv ZSGSRD 36955
17-03-18 02:38:33.144 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.144 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.144 -07 000000579 INF: FPGA: Recv ZSGSRD 36950
17-03-18 02:38:33.154 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.154 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.154 -07 000000512 INF: FPGA: Recv ZSGSRD 36959
17-03-18 02:38:33.164 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.164 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:33.164 -07 000000561 INF: FPGA: Recv ZSGSRD 36949
17-03-18 02:38:33.174 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.174 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:33.174 -07 000000629 INF: FPGA: Recv ZPIEZORD 33163
17-03-18 02:38:33.184 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:33.184 -07 000000591 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.924 V. Piezo Error = -8.4 V.
17-03-18 02:38:33.184 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36956 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36956 (-176.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36949 (-176.8 uncal um), Max = 36960 (-176.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:38:33.184 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36956, posNoise = 4, negNoise = 7
17-03-18 02:38:33.184 -07 000000591 INF: Z Motor: After move to -0.177720, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:33.184 -07 000000591 INF: Z Motor: Settle wait time = 1442 ms, measure time = 107 ms (allowed 150 ms), total time = 1549 ms
17-03-18 02:38:33.184 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:38:33.234 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 02:38:33.234 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:38:33.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:33.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:33.234 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:33.234 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:33.234 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:38:33.234 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:33.234 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:33.234 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:38:33.244 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:38:33.244 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:38:33.254 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:38:33.254 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:38:33.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:38:33.304 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:38:33.604 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:38:33.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:38:33.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:38:33.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613855664, 0x0, 559484976) start.
17-03-18 02:38:33.644 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:38:33.644 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:38:33.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 386 ms overall
17-03-18 02:38:33.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613855664, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:38:33.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:33.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:38:33.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:38:33.844 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:33.844 -07 000000461 INF: Autofocus start
17-03-18 02:38:33.844 -07 000000461 INF: MeasureProfile start
17-03-18 02:38:33.844 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:33.854 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:33.854 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:38:33.854 -07 000000461 INF: MeasureProfile done
17-03-18 02:38:33.854 -07 000000461 INF: X=80  Z correction [um]=0.337546
17-03-18 02:38:33.854 -07 000000461 INF: Autofocus finished
17-03-18 02:38:34.054 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:38:34.054 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:38:34.054 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177736535922053. ----------
17-03-18 02:38:34.054 -07 000000610 INF: Cycle	102	Tile	2	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:38:34.064 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37410, sync = True, waitForSettling = True)
17-03-18 02:38:34.064 -07 000000610 INF: Z Motor: Moving to -0.171252 mm, started at -0.177737 mm, distance = 6.48 um
17-03-18 02:38:34.064 -07 000000610 INF: FPGA: Xmit ZDACW 37410\n [Z Motor]
17-03-18 02:38:34.064 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:38:34.074 -07 000000610 INF: FPGA: 'ZDACW 37410' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:34.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:34.074 -07 000000576 INF: FPGA: Recv ZDACR 37410
17-03-18 02:38:34.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:38:34.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.234 -07 000000502 INF: FPGA: Recv ZSGSRD 35951
17-03-18 02:38:34.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:34.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.244 -07 000000501 INF: FPGA: Recv ZSGSRD 35947
17-03-18 02:38:34.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.254 -07 000000579 INF: FPGA: Recv ZSGSRD 35949
17-03-18 02:38:34.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.264 -07 000000430 INF: FPGA: Recv ZSGSRD 35951
17-03-18 02:38:34.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.274 -07 000000626 INF: FPGA: Recv ZSGSRD 35948
17-03-18 02:38:34.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.284 -07 000000618 INF: FPGA: Recv ZSGSRD 35954
17-03-18 02:38:34.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.294 -07 000000591 INF: FPGA: Recv ZSGSRD 35946
17-03-18 02:38:34.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.304 -07 000000444 INF: FPGA: Recv ZSGSRD 35947
17-03-18 02:38:34.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.314 -07 000000569 INF: FPGA: Recv ZSGSRD 35951
17-03-18 02:38:34.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:34.324 -07 000000590 INF: FPGA: Recv ZSGSRD 35944
17-03-18 02:38:34.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:34.334 -07 000000502 INF: FPGA: Recv ZPIEZORD 31812
17-03-18 02:38:34.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:34.344 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -9.1 V.
17-03-18 02:38:34.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35949 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35948 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35944 (-170.4 uncal um), Max = 35954 (-170.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:38:34.344 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35949, posNoise = 5, negNoise = 5
17-03-18 02:38:34.344 -07 000000610 INF: Z Motor: After move to -0.171252, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:34.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:38:34.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:34.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:34.344 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:34.344 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:34.344 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:38:34.344 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:38:34.344 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:38:34.344 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:34.344 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:38:34.344 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:38:34.344 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:34.344 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:38:34.354 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:38:34.354 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:38:34.354 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:38:34.354 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:38:34.364 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:38:34.364 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:38:34.364 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:38:34.364 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:38:34.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37586 150\n [Camera]
17-03-18 02:38:34.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 02:38:34.964 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:38:34.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:38:34.964 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:34.964 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:34.964 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:38:34.974 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:38:34.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:38:34.974 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:34.974 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:34.974 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:38:35.154 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37586 782
17-03-18 02:38:35.304 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:38:35.354 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:38:35.354 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:38:35.364 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:35.364 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:35.364 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:38:35.364 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:38:35.364 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:35.364 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:35.364 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:38:35.374 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:38:35.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:38:35.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:38:35.504 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:35.504 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:35.504 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:38:35.504 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:38:35.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:38:35.504 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:35.624 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:35.624 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:38:35.694 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:38:35.694 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:38:35.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37586 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-18 02:38:35.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:38:35.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.1712673542953. ------
17-03-18 02:38:35.694 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:35.694 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17805 mm
17-03-18 02:38:35.694 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:38:35.704 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:38:35.704 -07 000000569 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:38:35.704 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:35.704 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:35.704 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:38:35.704 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38896, sync = True, waitForSettling = False)
17-03-18 02:38:35.704 -07 000000626 INF: Z Motor: Moving to -0.178054 mm, started at -0.171267 mm, distance = -6.79 um
17-03-18 02:38:35.704 -07 000000579 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:38:35.714 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:35.714 -07 000000569 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:35.714 -07 000000626 INF: FPGA: Xmit ZDACW 38896\n [Z Motor]
17-03-18 02:38:35.714 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:38:35.714 -07 000000569 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:38:35.714 -07 000000569 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:38:35.724 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:38:35.724 -07 000000626 INF: FPGA: 'ZDACW 38896' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:38:35.734 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:38:35.754 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:35.754 -07 000000455 INF: FPGA: Recv ZDACR 38896
17-03-18 02:38:35.764 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:38:35.764 -07 000000626 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 02:38:35.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:38:35.894 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:38:35.894 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:35.904 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:38:35.904 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:38:35.924 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:38:35.924 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 02:38:36.014 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:38:36.014 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:38:36.014 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:36.024 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:38:36.024 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 02:38:36.104 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:38:36.104 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:38:36.154 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:36.154 -07 000000618 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:38:36.164 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:36.164 -07 000000569 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:36.164 -07 000000569 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:38:36.164 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-18 02:38:36.384 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.994908,
17-03-18 02:38:36.494 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:38:36.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:38:37.114 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:37.114 -07 000000512 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:38:37.124 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.124 -07 000000569 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:37.144 -07 000000569 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:38:37.144 -07 000000569 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:38:37.154 -07 000000569 INF: Y Motor: Moved to 61.5630 after 1449 ms (table move)
17-03-18 02:38:37.154 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178054 mm (DAC = 38896)
17-03-18 02:38:37.154 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.154 -07 000000590 INF: FPGA: Recv ZSGSRD 37013
17-03-18 02:38:37.164 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:37.164 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.164 -07 000000512 INF: FPGA: Recv ZSGSRD 37004
17-03-18 02:38:37.174 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.174 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.174 -07 000000576 INF: FPGA: Recv ZSGSRD 37007
17-03-18 02:38:37.184 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.184 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.184 -07 000000629 INF: FPGA: Recv ZSGSRD 37009
17-03-18 02:38:37.194 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.194 -07 000000430 INF: FPGA: Recv ZSGSRD 37016
17-03-18 02:38:37.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.204 -07 000000502 INF: FPGA: Recv ZSGSRD 37015
17-03-18 02:38:37.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:38:37.214 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.214 -07 000000629 INF: FPGA: Recv ZSGSRD 37007
17-03-18 02:38:37.224 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.224 -07 000000512 INF: FPGA: Recv ZSGSRD 37002
17-03-18 02:38:37.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.234 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.234 -07 000000561 INF: FPGA: Recv ZSGSRD 37002
17-03-18 02:38:37.244 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:37.244 -07 000000591 INF: FPGA: Recv ZSGSRD 37008
17-03-18 02:38:37.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.254 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:37.254 -07 000000444 INF: FPGA: Recv ZPIEZORD 33273
17-03-18 02:38:37.264 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:37.264 -07 000000501 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.935 V. Piezo Error = -8.3 V.
17-03-18 02:38:37.264 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37008 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37008 (-177.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37002 (-177.1 uncal um), Max = 37016 (-177.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:38:37.264 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37008, posNoise = 8, negNoise = 6
17-03-18 02:38:37.264 -07 000000501 INF: Z Motor: After move to -0.178054, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:37.264 -07 000000501 INF: Z Motor: Settle wait time = 1451 ms, measure time = 107 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:38:37.264 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:38:37.314 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:38:37.314 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:38:37.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:37.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:37.314 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:37.314 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:37.314 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:38:37.314 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:37.324 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:37.324 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:38:37.324 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:38:37.324 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:38:37.334 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:38:37.334 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:38:37.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:38:37.374 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:38:37.674 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:38:37.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:38:37.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:38:37.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-18 02:38:37.714 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:38:37.714 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:38:37.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:38:37.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:38:37.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:37.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:38:37.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:38:37.814 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:37.814 -07 000000502 INF: Autofocus start
17-03-18 02:38:37.814 -07 000000502 INF: MeasureProfile start
17-03-18 02:38:37.814 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:37.824 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:37.824 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:38:37.824 -07 000000502 INF: MeasureProfile done
17-03-18 02:38:37.824 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:38:37.824 -07 000000502 INF: Autofocus finished
17-03-18 02:38:38.024 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:38:38.024 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:38:38.024 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.178070594953424. ----------
17-03-18 02:38:38.024 -07 000000610 INF: Cycle	102	Tile	3	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:38:38.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37393, sync = True, waitForSettling = True)
17-03-18 02:38:38.034 -07 000000610 INF: Z Motor: Moving to -0.171174 mm, started at -0.178071 mm, distance = 6.90 um
17-03-18 02:38:38.034 -07 000000610 INF: FPGA: Xmit ZDACW 37393\n [Z Motor]
17-03-18 02:38:38.034 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:38:38.044 -07 000000610 INF: FPGA: 'ZDACW 37393' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:38.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:38.044 -07 000000618 INF: FPGA: Recv ZDACR 37393
17-03-18 02:38:38.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:38:38.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.204 -07 000000512 INF: FPGA: Recv ZSGSRD 35939
17-03-18 02:38:38.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:38.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.214 -07 000000502 INF: FPGA: Recv ZSGSRD 35943
17-03-18 02:38:38.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.224 -07 000000501 INF: FPGA: Recv ZSGSRD 35939
17-03-18 02:38:38.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.234 -07 000000629 INF: FPGA: Recv ZSGSRD 35931
17-03-18 02:38:38.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35943
17-03-18 02:38:38.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.254 -07 000000462 INF: FPGA: Recv ZSGSRD 35939
17-03-18 02:38:38.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.264 -07 000000576 INF: FPGA: Recv ZSGSRD 35931
17-03-18 02:38:38.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.274 -07 000000579 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:38:38.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.284 -07 000000461 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:38:38.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:38.294 -07 000000561 INF: FPGA: Recv ZSGSRD 35941
17-03-18 02:38:38.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:38.304 -07 000000569 INF: FPGA: Recv ZPIEZORD 31827
17-03-18 02:38:38.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:38.314 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.1 V.
17-03-18 02:38:38.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35938 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35939 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35931 (-170.3 uncal um), Max = 35943 (-170.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:38:38.314 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35938, posNoise = 5, negNoise = 7
17-03-18 02:38:38.314 -07 000000610 INF: Z Motor: After move to -0.171174, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:38.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:38:38.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:38.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:38.314 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:38.314 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:38.314 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:38:38.314 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:38.314 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:38:38.314 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:38:38.314 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:38.314 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:38:38.314 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:38:38.314 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:38:38.314 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:38:38.314 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:38:38.324 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:38:38.324 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:38:38.324 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:38:38.324 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:38:38.334 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:38:38.334 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:38:38.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37569 150\n [Camera]
17-03-18 02:38:38.534 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:38:38.934 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:38:38.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:38:38.934 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:38.934 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:38:38.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:38:38.934 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:38.934 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:38.934 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:38:38.944 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:38.944 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:38:39.124 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37569 782
17-03-18 02:38:39.274 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:38:39.334 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:38:39.334 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:38:39.334 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:39.334 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:39.334 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:38:39.334 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:38:39.334 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:38:39.334 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:39.344 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:39.354 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:38:39.464 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:38:39.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:38:39.464 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:39.464 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:39.464 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:38:39.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:38:39.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:38:39.474 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:39.584 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:39.584 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:38:39.654 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:38:39.654 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:38:39.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37569 150' command took 2 ms to send, 1318 ms to get response, and 1323 ms overall
17-03-18 02:38:39.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:38:39.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.17119668796174. ------
17-03-18 02:38:39.664 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:39.664 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17741 mm
17-03-18 02:38:39.664 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:38:39.664 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38755, sync = True, waitForSettling = False)
17-03-18 02:38:39.664 -07 000000569 INF: Z Motor: Moving to -0.177409 mm, started at -0.171197 mm, distance = -6.21 um
17-03-18 02:38:39.664 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:38:39.664 -07 000000629 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 02:38:39.674 -07 000000569 INF: FPGA: Xmit ZDACW 38755\n [Z Motor]
17-03-18 02:38:39.674 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:39.674 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 7 ms overall
17-03-18 02:38:39.674 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:38:39.684 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:39.684 -07 000000569 INF: FPGA: 'ZDACW 38755' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:38:39.684 -07 000000512 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:38:39.694 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:38:39.694 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:38:39.694 -07 000000629 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:39.694 -07 000000629 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:38:39.694 -07 000000629 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:38:39.704 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:39.704 -07 000000626 INF: FPGA: Recv ZDACR 38755
17-03-18 02:38:39.714 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:38:39.714 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:38:39.714 -07 000000569 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:38:39.864 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:38:39.864 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:38:39.864 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:39.874 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:38:39.874 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:38:39.894 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:38:39.894 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:38:39.984 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:38:39.984 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:38:39.984 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:39.984 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:38:39.994 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 02:38:40.084 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:38:40.084 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:38:40.134 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:40.134 -07 000000569 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:38:40.144 -07 000000629 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:40.144 -07 000000629 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:40.144 -07 000000629 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:38:40.144 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec
17-03-18 02:38:41.094 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:41.094 -07 000000591 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:38:41.104 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:41.104 -07 000000629 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:41.124 -07 000000629 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:38:41.124 -07 000000629 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:38:41.134 -07 000000629 INF: Y Motor: Moved to 62.3950 after 1461 ms (table move)
17-03-18 02:38:41.134 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177409 mm (DAC = 38755)
17-03-18 02:38:41.134 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.134 -07 000000561 INF: FPGA: Recv ZSGSRD 36907
17-03-18 02:38:41.144 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:41.144 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.144 -07 000000424 INF: FPGA: Recv ZSGSRD 36907
17-03-18 02:38:41.154 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.154 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.154 -07 000000576 INF: FPGA: Recv ZSGSRD 36912
17-03-18 02:38:41.164 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.164 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.164 -07 000000430 INF: FPGA: Recv ZSGSRD 36901
17-03-18 02:38:41.174 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.174 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.174 -07 000000444 INF: FPGA: Recv ZSGSRD 36905
17-03-18 02:38:41.184 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.184 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.184 -07 000000512 INF: FPGA: Recv ZSGSRD 36898
17-03-18 02:38:41.194 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.194 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.194 -07 000000579 INF: FPGA: Recv ZSGSRD 36905
17-03-18 02:38:41.204 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.204 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.204 -07 000000569 INF: FPGA: Recv ZSGSRD 36908
17-03-18 02:38:41.214 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.214 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.214 -07 000000626 INF: FPGA: Recv ZSGSRD 36904
17-03-18 02:38:41.224 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.224 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:41.224 -07 000000561 INF: FPGA: Recv ZSGSRD 36908
17-03-18 02:38:41.234 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.234 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:41.234 -07 000000591 INF: FPGA: Recv ZPIEZORD 33135
17-03-18 02:38:41.244 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:41.244 -07 000000618 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.914 V. Piezo Error = -8.4 V.
17-03-18 02:38:41.244 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36906 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36906 (-176.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36898 (-176.5 uncal um), Max = 36912 (-176.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:38:41.244 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36906, posNoise = 6, negNoise = 8
17-03-18 02:38:41.244 -07 000000618 INF: Z Motor: After move to -0.177409, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:41.244 -07 000000618 INF: Z Motor: Settle wait time = 1465 ms, measure time = 107 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:38:41.244 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:38:41.294 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:38:41.294 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:38:41.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:41.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:41.294 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:41.294 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:41.294 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:38:41.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:41.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:41.294 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:38:41.304 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:38:41.304 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:38:41.314 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:38:41.314 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:38:41.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:38:41.364 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:38:41.494 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:38:41.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:38:41.664 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:38:41.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:38:41.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:38:41.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:38:41.704 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:38:41.704 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:38:41.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:38:41.754 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.970374,
17-03-18 02:38:41.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:38:41.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:41.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:38:41.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:38:41.804 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:41.804 -07 000000629 INF: Autofocus start
17-03-18 02:38:41.804 -07 000000629 INF: MeasureProfile start
17-03-18 02:38:41.804 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:41.814 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:41.814 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:38:41.814 -07 000000629 INF: MeasureProfile done
17-03-18 02:38:41.814 -07 000000629 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:38:41.814 -07 000000629 INF: Autofocus finished
17-03-18 02:38:42.014 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:38:42.014 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:38:42.014 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177415325314965. ----------
17-03-18 02:38:42.014 -07 000000610 INF: Cycle	102	Tile	4	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:38:42.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37269, sync = True, waitForSettling = True)
17-03-18 02:38:42.024 -07 000000610 INF: Z Motor: Moving to -0.170607 mm, started at -0.177415 mm, distance = 6.81 um
17-03-18 02:38:42.024 -07 000000610 INF: FPGA: Xmit ZDACW 37269\n [Z Motor]
17-03-18 02:38:42.024 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:38:42.034 -07 000000610 INF: FPGA: 'ZDACW 37269' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:42.034 -07 000000591 INF: FPGA: Recv ZDACR 37269
17-03-18 02:38:42.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:38:42.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.194 -07 000000590 INF: FPGA: Recv ZSGSRD 35847
17-03-18 02:38:42.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:42.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.204 -07 000000629 INF: FPGA: Recv ZSGSRD 35852
17-03-18 02:38:42.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.214 -07 000000606 INF: FPGA: Recv ZSGSRD 35850
17-03-18 02:38:42.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.224 -07 000000467 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:38:42.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.234 -07 000000424 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:38:42.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.244 -07 000000467 INF: FPGA: Recv ZSGSRD 35852
17-03-18 02:38:42.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.254 -07 000000512 INF: FPGA: Recv ZSGSRD 35848
17-03-18 02:38:42.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.264 -07 000000462 INF: FPGA: Recv ZSGSRD 35843
17-03-18 02:38:42.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.274 -07 000000579 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:38:42.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:42.284 -07 000000444 INF: FPGA: Recv ZSGSRD 35845
17-03-18 02:38:42.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:42.294 -07 000000579 INF: FPGA: Recv ZPIEZORD 31746
17-03-18 02:38:42.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:42.304 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -9.1 V.
17-03-18 02:38:42.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35847 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35846 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35843 (-169.7 uncal um), Max = 35852 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:38:42.304 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35847, posNoise = 5, negNoise = 4
17-03-18 02:38:42.304 -07 000000610 INF: Z Motor: After move to -0.170607, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:42.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:38:42.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:42.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:42.304 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:42.304 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:42.304 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:38:42.304 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:42.304 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:38:42.304 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:38:42.304 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:38:42.304 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:38:42.304 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:38:42.304 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:38:42.304 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:38:42.304 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:38:42.314 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:38:42.314 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:38:42.314 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:38:42.314 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:38:42.324 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:38:42.324 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:38:42.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37446 150\n [Camera]
17-03-18 02:38:42.524 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:38:42.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:38:42.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:38:42.914 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:42.924 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:38:42.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:38:42.924 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:42.924 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:42.924 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:38:42.934 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:42.934 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:38:43.114 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37446 782
17-03-18 02:38:43.264 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:38:43.304 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:38:43.304 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:38:43.304 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:43.304 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:43.304 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:38:43.304 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:38:43.304 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:38:43.304 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:43.314 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:38:43.324 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:38:43.454 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:38:43.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:38:43.454 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:43.454 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:43.454 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:38:43.454 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:38:43.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:38:43.454 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:43.454 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:43.454 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:38:43.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:38:43.644 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:38:43.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37446 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-18 02:38:43.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:38:43.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.17061208465684. ------
17-03-18 02:38:43.654 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17717 mm
17-03-18 02:38:43.654 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:38:43.654 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:43.654 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:38:43.654 -07 000000569 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:38:43.654 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38702, sync = True, waitForSettling = False)
17-03-18 02:38:43.654 -07 000000591 INF: Z Motor: Moving to -0.177166 mm, started at -0.170612 mm, distance = -6.55 um
17-03-18 02:38:43.654 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:43.664 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:43.664 -07 000000591 INF: FPGA: Xmit ZDACW 38702\n [Z Motor]
17-03-18 02:38:43.664 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:38:43.674 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:43.674 -07 000000591 INF: FPGA: 'ZDACW 38702' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:38:43.674 -07 000000424 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:38:43.684 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:38:43.684 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:38:43.684 -07 000000569 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:43.684 -07 000000569 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:38:43.684 -07 000000569 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:38:43.694 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:43.694 -07 000000461 INF: FPGA: Recv ZDACR 38702
17-03-18 02:38:43.704 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:38:43.704 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:38:43.704 -07 000000591 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:38:43.834 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:38:43.834 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:38:43.834 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:38:43.834 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:43.834 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:38:43.844 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:43.844 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:43.844 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:38:43.844 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:38:43.854 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:38:43.884 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:38:43.884 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:38:44.074 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:38:44.074 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:38:44.124 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:44.124 -07 000000461 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:38:44.134 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:44.134 -07 000000569 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:44.134 -07 000000569 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:38:44.134 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 02:38:45.084 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:45.084 -07 000000462 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:38:45.094 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:45.094 -07 000000569 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:45.114 -07 000000569 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:38:45.114 -07 000000569 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:38:45.114 -07 000000569 INF: Y Motor: Moved to 63.2236 after 1462 ms (table move)
17-03-18 02:38:45.124 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177166 mm (DAC = 38702)
17-03-18 02:38:45.124 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.124 -07 000000430 INF: FPGA: Recv ZSGSRD 36877
17-03-18 02:38:45.134 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:45.134 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.134 -07 000000461 INF: FPGA: Recv ZSGSRD 36865
17-03-18 02:38:45.144 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.144 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.144 -07 000000444 INF: FPGA: Recv ZSGSRD 36872
17-03-18 02:38:45.154 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.154 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.154 -07 000000590 INF: FPGA: Recv ZSGSRD 36874
17-03-18 02:38:45.164 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.164 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.164 -07 000000606 INF: FPGA: Recv ZSGSRD 36869
17-03-18 02:38:45.174 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.174 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.174 -07 000000430 INF: FPGA: Recv ZSGSRD 36870
17-03-18 02:38:45.184 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.184 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.184 -07 000000461 INF: FPGA: Recv ZSGSRD 36864
17-03-18 02:38:45.194 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.194 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.194 -07 000000444 INF: FPGA: Recv ZSGSRD 36868
17-03-18 02:38:45.204 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.204 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.204 -07 000000501 INF: FPGA: Recv ZSGSRD 36864
17-03-18 02:38:45.214 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.214 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:45.214 -07 000000576 INF: FPGA: Recv ZSGSRD 36867
17-03-18 02:38:45.224 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.224 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:45.224 -07 000000579 INF: FPGA: Recv ZPIEZORD 33085
17-03-18 02:38:45.234 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:45.234 -07 000000502 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.906 V. Piezo Error = -8.4 V.
17-03-18 02:38:45.234 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36869 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36868 (-176.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36864 (-176.3 uncal um), Max = 36877 (-176.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:38:45.234 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36869, posNoise = 8, negNoise = 5
17-03-18 02:38:45.234 -07 000000502 INF: Z Motor: After move to -0.177166, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:45.234 -07 000000502 INF: Z Motor: Settle wait time = 1467 ms, measure time = 107 ms (allowed 150 ms), total time = 1574 ms
17-03-18 02:38:45.234 -07 000000502 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:38:45.284 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:38:45.284 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:38:45.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:45.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:45.284 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:45.284 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:45.284 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:38:45.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:45.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:45.284 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:38:45.294 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:38:45.294 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:38:45.294 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:38:45.294 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:38:45.304 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:38:45.344 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:38:45.644 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:38:45.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:38:45.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:38:45.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:38:45.684 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:38:45.684 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:38:45.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:38:45.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:38:45.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:45.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:38:45.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:38:45.784 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:45.784 -07 000000430 INF: Autofocus start
17-03-18 02:38:45.784 -07 000000430 INF: MeasureProfile start
17-03-18 02:38:45.784 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:45.794 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:38:45.794 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:38:45.794 -07 000000430 INF: MeasureProfile done
17-03-18 02:38:45.794 -07 000000430 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:38:45.794 -07 000000430 INF: Autofocus finished
17-03-18 02:38:45.994 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:38:45.994 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:38:45.994 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.17717762946572. ----------
17-03-18 02:38:45.994 -07 000000610 INF: Cycle	102	Tile	5	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:38:46.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37199, sync = True, waitForSettling = True)
17-03-18 02:38:46.004 -07 000000610 INF: Z Motor: Moving to -0.170286 mm, started at -0.177178 mm, distance = 6.89 um
17-03-18 02:38:46.004 -07 000000610 INF: FPGA: Xmit ZDACW 37199\n [Z Motor]
17-03-18 02:38:46.004 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:38:46.014 -07 000000610 INF: FPGA: 'ZDACW 37199' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:46.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:46.014 -07 000000626 INF: FPGA: Recv ZDACR 37199
17-03-18 02:38:46.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:38:46.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.174 -07 000000455 INF: FPGA: Recv ZSGSRD 35798
17-03-18 02:38:46.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:46.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.184 -07 000000444 INF: FPGA: Recv ZSGSRD 35800
17-03-18 02:38:46.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.194 -07 000000501 INF: FPGA: Recv ZSGSRD 35793
17-03-18 02:38:46.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.204 -07 000000462 INF: FPGA: Recv ZSGSRD 35800
17-03-18 02:38:46.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.214 -07 000000461 INF: FPGA: Recv ZSGSRD 35796
17-03-18 02:38:46.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.224 -07 000000591 INF: FPGA: Recv ZSGSRD 35802
17-03-18 02:38:46.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.234 -07 000000430 INF: FPGA: Recv ZSGSRD 35799
17-03-18 02:38:46.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.244 -07 000000501 INF: FPGA: Recv ZSGSRD 35797
17-03-18 02:38:46.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.254 -07 000000576 INF: FPGA: Recv ZSGSRD 35798
17-03-18 02:38:46.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:46.264 -07 000000461 INF: FPGA: Recv ZSGSRD 35794
17-03-18 02:38:46.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:46.274 -07 000000591 INF: FPGA: Recv ZPIEZORD 31623
17-03-18 02:38:46.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:46.284 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -9.2 V.
17-03-18 02:38:46.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35798 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35798 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35793 (-169.4 uncal um), Max = 35802 (-169.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:38:46.284 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35798, posNoise = 4, negNoise = 5
17-03-18 02:38:46.284 -07 000000610 INF: Z Motor: After move to -0.170286, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:46.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:38:46.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:46.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:46.284 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:46.284 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:46.284 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:38:46.284 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:46.284 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:38:46.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:38:46.284 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:46.284 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:38:46.284 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:38:46.284 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:38:46.294 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:38:46.294 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:38:46.294 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:38:46.294 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:38:46.304 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:38:46.304 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:38:46.304 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:38:46.304 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:38:46.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37376 150\n [Camera]
17-03-18 02:38:46.494 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:38:46.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:38:46.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:38:46.904 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:38:46.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:38:46.904 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:46.904 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:46.904 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:38:46.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:38:46.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:38:46.904 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:47.034 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:47.034 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:38:47.094 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37376 782
17-03-18 02:38:47.124 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.999021,
17-03-18 02:38:47.244 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:38:47.304 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:38:47.304 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:38:47.304 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:47.304 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:38:47.304 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:38:47.424 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:38:47.424 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:38:47.424 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:47.424 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:38:47.434 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 02:38:47.434 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:38:47.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:38:47.444 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:47.444 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:38:47.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:38:47.444 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:47.444 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:47.444 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:38:47.444 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:47.444 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:38:47.634 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:38:47.634 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:38:47.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37376 150' command took 2 ms to send, 1311 ms to get response, and 1323 ms overall
17-03-18 02:38:47.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:38:47.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170297298261894. ------
17-03-18 02:38:47.634 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:47.634 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17641 mm
17-03-18 02:38:47.634 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:38:47.634 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:47.644 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:38:47.644 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:38:47.644 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:38:47.644 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 02:38:47.644 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38537, sync = True, waitForSettling = False)
17-03-18 02:38:47.644 -07 000000501 INF: Z Motor: Moving to -0.176411 mm, started at -0.170297 mm, distance = -6.11 um
17-03-18 02:38:47.654 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:47.654 -07 000000591 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:38:47.664 -07 000000501 INF: FPGA: Xmit ZDACW 38537\n [Z Motor]
17-03-18 02:38:47.664 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:38:47.664 -07 000000626 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:47.664 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:38:47.664 -07 000000626 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:38:47.664 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:38:47.674 -07 000000501 INF: FPGA: 'ZDACW 38537' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:38:47.674 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:47.674 -07 000000569 INF: FPGA: Recv ZDACR 38537
17-03-18 02:38:47.684 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:38:47.684 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:47.684 -07 000000501 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:38:47.834 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:38:47.834 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:38:47.834 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:47.834 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:47.844 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:38:47.844 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:38:47.844 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:47.844 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:38:47.844 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:38:47.844 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:38:47.844 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:47.844 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:38:48.054 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:38:48.054 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:38:48.104 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:48.104 -07 000000618 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:38:48.114 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:48.114 -07 000000626 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:48.114 -07 000000626 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 02:38:48.114 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 02:38:49.064 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:49.064 -07 000000501 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:38:49.074 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:49.074 -07 000000626 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:49.094 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:38:49.094 -07 000000626 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:38:49.094 -07 000000626 INF: Y Motor: Moved to 64.0566 after 1454 ms (table move)
17-03-18 02:38:49.094 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176411 mm (DAC = 38537)
17-03-18 02:38:49.094 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.104 -07 000000512 INF: FPGA: Recv ZSGSRD 36758
17-03-18 02:38:49.114 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:49.114 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.114 -07 000000618 INF: FPGA: Recv ZSGSRD 36757
17-03-18 02:38:49.124 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.124 -07 000000461 INF: FPGA: Recv ZSGSRD 36752
17-03-18 02:38:49.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.134 -07 000000467 INF: FPGA: Recv ZSGSRD 36745
17-03-18 02:38:49.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.144 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.144 -07 000000606 INF: FPGA: Recv ZSGSRD 36748
17-03-18 02:38:49.154 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.154 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.154 -07 000000512 INF: FPGA: Recv ZSGSRD 36755
17-03-18 02:38:49.164 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.164 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.164 -07 000000591 INF: FPGA: Recv ZSGSRD 36744
17-03-18 02:38:49.174 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.174 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.174 -07 000000561 INF: FPGA: Recv ZSGSRD 36750
17-03-18 02:38:49.184 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.184 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.184 -07 000000467 INF: FPGA: Recv ZSGSRD 36751
17-03-18 02:38:49.194 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.194 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:49.194 -07 000000606 INF: FPGA: Recv ZSGSRD 36755
17-03-18 02:38:49.204 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.204 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:49.204 -07 000000512 INF: FPGA: Recv ZPIEZORD 32944
17-03-18 02:38:49.214 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.214 -07 000000462 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.4 V.
17-03-18 02:38:49.214 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36752 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36752 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36744 (-175.5 uncal um), Max = 36758 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:38:49.214 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36752, posNoise = 6, negNoise = 8
17-03-18 02:38:49.214 -07 000000462 INF: Z Motor: After move to -0.176411, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:49.214 -07 000000462 INF: Z Motor: Settle wait time = 1456 ms, measure time = 111 ms (allowed 150 ms), total time = 1567 ms
17-03-18 02:38:49.214 -07 000000462 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:38:49.254 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:38:49.254 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:38:49.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:49.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:49.254 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:49.254 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:38:49.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:49.254 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:49.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:49.254 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:38:49.264 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:38:49.264 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:38:49.264 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:38:49.264 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:38:49.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:38:49.314 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:38:49.614 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:38:49.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:38:49.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:38:49.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:38:49.654 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:38:49.654 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:38:49.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:38:49.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:38:49.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:49.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:38:49.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:38:49.754 -07 000000618 INF: Autofocus start
17-03-18 02:38:49.754 -07 000000618 INF: MeasureProfile start
17-03-18 02:38:49.754 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:49.754 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:49.764 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:38:49.764 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:38:49.764 -07 000000618 INF: MeasureProfile done
17-03-18 02:38:49.774 -07 000000618 INF: X=96  Z correction [um]=0.4193256
17-03-18 02:38:49.774 -07 000000618 INF: Autofocus finished
17-03-18 02:38:49.964 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:38:49.964 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:38:49.964 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176425996645134. ----------
17-03-18 02:38:49.964 -07 000000610 INF: Cycle	102	Tile	6	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:38:49.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37142, sync = True, waitForSettling = True)
17-03-18 02:38:49.974 -07 000000610 INF: Z Motor: Moving to -0.170025 mm, started at -0.176426 mm, distance = 6.40 um
17-03-18 02:38:49.974 -07 000000610 INF: FPGA: Xmit ZDACW 37142\n [Z Motor]
17-03-18 02:38:49.974 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:38:49.984 -07 000000610 INF: FPGA: 'ZDACW 37142' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:49.984 -07 000000467 INF: FPGA: Recv ZDACR 37142
17-03-18 02:38:49.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:49.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:38:50.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.144 -07 000000461 INF: FPGA: Recv ZSGSRD 35755
17-03-18 02:38:50.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:50.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.154 -07 000000606 INF: FPGA: Recv ZSGSRD 35759
17-03-18 02:38:50.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.164 -07 000000424 INF: FPGA: Recv ZSGSRD 35757
17-03-18 02:38:50.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.174 -07 000000579 INF: FPGA: Recv ZSGSRD 35760
17-03-18 02:38:50.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.184 -07 000000501 INF: FPGA: Recv ZSGSRD 35758
17-03-18 02:38:50.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.194 -07 000000626 INF: FPGA: Recv ZSGSRD 35752
17-03-18 02:38:50.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.204 -07 000000569 INF: FPGA: Recv ZSGSRD 35761
17-03-18 02:38:50.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.214 -07 000000424 INF: FPGA: Recv ZSGSRD 35759
17-03-18 02:38:50.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.224 -07 000000590 INF: FPGA: Recv ZSGSRD 35757
17-03-18 02:38:50.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:50.234 -07 000000576 INF: FPGA: Recv ZSGSRD 35757
17-03-18 02:38:50.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:50.244 -07 000000461 INF: FPGA: Recv ZPIEZORD 31591
17-03-18 02:38:50.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:50.254 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -9.2 V.
17-03-18 02:38:50.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35758 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35758 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35752 (-169.1 uncal um), Max = 35761 (-169.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:38:50.254 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35758, posNoise = 3, negNoise = 6
17-03-18 02:38:50.254 -07 000000610 INF: Z Motor: After move to -0.170025, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:50.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:38:50.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:50.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:50.254 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:50.254 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:38:50.254 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:38:50.254 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:38:50.254 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:50.254 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:50.254 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:38:50.254 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:38:50.254 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:50.254 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:38:50.264 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:38:50.264 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:38:50.264 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:38:50.264 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:38:50.274 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:38:50.274 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:38:50.274 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:38:50.274 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:38:50.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37318 150\n [Camera]
17-03-18 02:38:50.474 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 02:38:50.874 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:38:50.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:38:50.874 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:50.874 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:50.874 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:38:50.874 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:38:50.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:38:50.874 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:50.994 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:50.994 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:38:51.064 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37318 782
17-03-18 02:38:51.214 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:38:51.264 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:38:51.264 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:38:51.264 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:51.264 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:38:51.264 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:38:51.374 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:38:51.374 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:38:51.374 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:51.374 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:38:51.384 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-18 02:38:51.404 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:38:51.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:38:51.404 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:51.404 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:38:51.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:38:51.404 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:51.414 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:51.414 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:38:51.414 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:51.414 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:38:51.494 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:38:51.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:38:51.594 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:38:51.594 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:38:51.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37318 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-18 02:38:51.594 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:38:51.594 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170040329776223. ------
17-03-18 02:38:51.604 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:51.604 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17647 mm
17-03-18 02:38:51.604 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:38:51.604 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:51.604 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:38:51.604 -07 000000430 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 02:38:51.604 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38550, sync = True, waitForSettling = False)
17-03-18 02:38:51.604 -07 000000502 INF: Z Motor: Moving to -0.176471 mm, started at -0.170040 mm, distance = -6.43 um
17-03-18 02:38:51.614 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:51.614 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:51.614 -07 000000590 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:38:51.624 -07 000000502 INF: FPGA: Xmit ZDACW 38550\n [Z Motor]
17-03-18 02:38:51.624 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:38:51.624 -07 000000430 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:51.624 -07 000000430 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:38:51.624 -07 000000430 INF: Y Motor: Moving 1338 steps-12
17-03-18 02:38:51.624 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:38:51.634 -07 000000502 INF: FPGA: 'ZDACW 38550' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:38:51.634 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:38:51.644 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:38:51.654 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:51.654 -07 000000455 INF: FPGA: Recv ZDACR 38550
17-03-18 02:38:51.664 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:38:51.664 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:38:51.814 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:38:51.814 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:38:51.814 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:51.814 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:38:51.814 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:38:51.814 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:51.814 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:51.814 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:38:51.814 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:51.824 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:38:51.834 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:38:51.834 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:38:52.014 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:38:52.014 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:38:52.064 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:52.064 -07 000000629 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:38:52.074 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:52.074 -07 000000430 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:52.074 -07 000000430 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:38:52.074 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-18 02:38:52.494 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.989471,
17-03-18 02:38:53.024 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:53.024 -07 000000618 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:38:53.034 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:53.034 -07 000000430 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:53.054 -07 000000430 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:38:53.054 -07 000000430 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:38:53.054 -07 000000430 INF: Y Motor: Moved to 64.8784 after 1450 ms (table move)
17-03-18 02:38:53.064 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176471 mm (DAC = 38550)
17-03-18 02:38:53.064 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.064 -07 000000590 INF: FPGA: Recv ZSGSRD 36757
17-03-18 02:38:53.074 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:38:53.074 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.074 -07 000000455 INF: FPGA: Recv ZSGSRD 36757
17-03-18 02:38:53.084 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.084 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.084 -07 000000461 INF: FPGA: Recv ZSGSRD 36767
17-03-18 02:38:53.094 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.094 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.094 -07 000000626 INF: FPGA: Recv ZSGSRD 36765
17-03-18 02:38:53.104 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.104 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.104 -07 000000629 INF: FPGA: Recv ZSGSRD 36765
17-03-18 02:38:53.114 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.114 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.114 -07 000000430 INF: FPGA: Recv ZSGSRD 36758
17-03-18 02:38:53.124 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.124 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.124 -07 000000462 INF: FPGA: Recv ZSGSRD 36757
17-03-18 02:38:53.134 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.134 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.134 -07 000000576 INF: FPGA: Recv ZSGSRD 36759
17-03-18 02:38:53.144 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.144 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.144 -07 000000444 INF: FPGA: Recv ZSGSRD 36758
17-03-18 02:38:53.154 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.154 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:53.154 -07 000000606 INF: FPGA: Recv ZSGSRD 36762
17-03-18 02:38:53.164 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.164 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:53.164 -07 000000512 INF: FPGA: Recv ZPIEZORD 32951
17-03-18 02:38:53.174 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.174 -07 000000467 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -8.4 V.
17-03-18 02:38:53.174 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36760 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36758 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36757 (-175.6 uncal um), Max = 36767 (-175.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:38:53.174 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36760, posNoise = 7, negNoise = 3
17-03-18 02:38:53.174 -07 000000467 INF: Z Motor: After move to -0.176471, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:53.174 -07 000000467 INF: Z Motor: Settle wait time = 1455 ms, measure time = 107 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:38:53.174 -07 000000467 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:38:53.224 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:38:53.224 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:38:53.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:53.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:53.224 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:53.224 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:53.224 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:38:53.234 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:53.234 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:38:53.234 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:38:53.234 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:38:53.234 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:38:53.244 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:38:53.244 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:38:53.244 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:38:53.284 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:38:53.584 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:38:53.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:38:53.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:38:53.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:38:53.624 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:38:53.624 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:38:53.624 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:38:53.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:38:53.704 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:53.704 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:38:53.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:38:53.724 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:53.724 -07 000000561 INF: Autofocus start
17-03-18 02:38:53.724 -07 000000561 INF: MeasureProfile start
17-03-18 02:38:53.724 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:53.734 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:38:53.734 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:38:53.734 -07 000000561 INF: MeasureProfile done
17-03-18 02:38:53.734 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:38:53.734 -07 000000561 INF: Autofocus finished
17-03-18 02:38:53.934 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:38:53.934 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:38:53.934 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176477390342268. ----------
17-03-18 02:38:53.934 -07 000000610 INF: Cycle	102	Tile	7	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:38:53.944 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37065, sync = True, waitForSettling = True)
17-03-18 02:38:53.944 -07 000000610 INF: Z Motor: Moving to -0.169673 mm, started at -0.176477 mm, distance = 6.80 um
17-03-18 02:38:53.944 -07 000000610 INF: FPGA: Xmit ZDACW 37065\n [Z Motor]
17-03-18 02:38:53.944 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:38:53.954 -07 000000610 INF: FPGA: 'ZDACW 37065' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:53.954 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:53.954 -07 000000629 INF: FPGA: Recv ZDACR 37065
17-03-18 02:38:53.964 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:53.964 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:38:54.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.114 -07 000000579 INF: FPGA: Recv ZSGSRD 35702
17-03-18 02:38:54.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:54.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.124 -07 000000501 INF: FPGA: Recv ZSGSRD 35708
17-03-18 02:38:54.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.134 -07 000000569 INF: FPGA: Recv ZSGSRD 35702
17-03-18 02:38:54.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.144 -07 000000462 INF: FPGA: Recv ZSGSRD 35699
17-03-18 02:38:54.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.154 -07 000000444 INF: FPGA: Recv ZSGSRD 35701
17-03-18 02:38:54.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.164 -07 000000502 INF: FPGA: Recv ZSGSRD 35707
17-03-18 02:38:54.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.174 -07 000000467 INF: FPGA: Recv ZSGSRD 35697
17-03-18 02:38:54.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.184 -07 000000576 INF: FPGA: Recv ZSGSRD 35696
17-03-18 02:38:54.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.194 -07 000000424 INF: FPGA: Recv ZSGSRD 35703
17-03-18 02:38:54.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:54.204 -07 000000461 INF: FPGA: Recv ZSGSRD 35707
17-03-18 02:38:54.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.214 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:54.214 -07 000000618 INF: FPGA: Recv ZPIEZORD 31555
17-03-18 02:38:54.224 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:54.224 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.656 V. Piezo Error = -9.1 V.
17-03-18 02:38:54.224 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35702 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35702 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35696 (-168.8 uncal um), Max = 35708 (-168.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:38:54.224 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35702, posNoise = 6, negNoise = 6
17-03-18 02:38:54.224 -07 000000610 INF: Z Motor: After move to -0.169673, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:54.224 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:38:54.224 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:54.224 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:54.224 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:54.224 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:54.224 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:38:54.224 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:38:54.224 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:38:54.224 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:54.224 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:38:54.224 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:38:54.224 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:54.224 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:38:54.234 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:38:54.234 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:38:54.234 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:38:54.234 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:38:54.244 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:38:54.244 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:38:54.244 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:38:54.244 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:38:54.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37241 150\n [Camera]
17-03-18 02:38:54.444 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:38:54.844 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:38:54.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:38:54.844 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:54.844 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:54.844 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:38:54.844 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:38:54.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:38:54.854 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:54.854 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:54.854 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:38:55.034 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37241 782
17-03-18 02:38:55.184 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:38:55.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:38:55.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:38:55.234 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:38:55.234 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:55.234 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:38:55.234 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:55.244 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:38:55.244 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:38:55.244 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:38:55.244 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:38:55.384 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:38:55.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:38:55.384 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:55.494 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:38:55.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:38:55.494 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:55.494 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:55.494 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:38:55.504 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:55.504 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:38:55.574 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:38:55.574 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:38:55.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37241 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-18 02:38:55.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:38:55.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169680573896285. ------
17-03-18 02:38:55.574 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17632 mm
17-03-18 02:38:55.574 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:38:55.574 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:55.584 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:38:55.584 -07 000000591 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:38:55.584 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:55.584 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:55.584 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:38:55.584 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38518, sync = True, waitForSettling = False)
17-03-18 02:38:55.584 -07 000000461 INF: Z Motor: Moving to -0.176324 mm, started at -0.169681 mm, distance = -6.64 um
17-03-18 02:38:55.584 -07 000000606 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:38:55.594 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:55.594 -07 000000591 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:55.594 -07 000000591 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:38:55.594 -07 000000591 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:38:55.594 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:38:55.604 -07 000000461 INF: FPGA: Xmit ZDACW 38518\n [Z Motor]
17-03-18 02:38:55.604 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:38:55.614 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:38:55.614 -07 000000461 INF: FPGA: 'ZDACW 38518' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:38:55.624 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:55.624 -07 000000501 INF: FPGA: Recv ZDACR 38518
17-03-18 02:38:55.634 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:38:55.634 -07 000000461 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:38:55.794 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:38:55.794 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:38:55.904 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 02:38:55.904 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:38:55.904 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:55.914 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:55.914 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 413 ms.
17-03-18 02:38:55.914 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:38:55.914 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:55.914 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:55.914 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 02:38:55.914 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 02:38:55.984 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:38:55.984 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:38:56.034 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:56.034 -07 000000606 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:38:56.044 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:56.044 -07 000000591 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:56.044 -07 000000591 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:38:56.044 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:38:56.494 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:38:56.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:38:56.994 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:56.994 -07 000000576 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:38:57.004 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.004 -07 000000591 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:57.034 -07 000000591 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:38:57.034 -07 000000591 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:38:57.034 -07 000000591 INF: Y Motor: Moved to 65.7134 after 1454 ms (table move)
17-03-18 02:38:57.034 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176324 mm (DAC = 38518)
17-03-18 02:38:57.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.044 -07 000000590 INF: FPGA: Recv ZSGSRD 36737
17-03-18 02:38:57.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:38:57.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.044 -07 000000576 INF: FPGA: Recv ZSGSRD 36739
17-03-18 02:38:57.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:38:57.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.054 -07 000000618 INF: FPGA: Recv ZSGSRD 36742
17-03-18 02:38:57.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.064 -07 000000590 INF: FPGA: Recv ZSGSRD 36738
17-03-18 02:38:57.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:38:57.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.074 -07 000000629 INF: FPGA: Recv ZSGSRD 36737
17-03-18 02:38:57.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.084 -07 000000606 INF: FPGA: Recv ZSGSRD 36736
17-03-18 02:38:57.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.094 -07 000000591 INF: FPGA: Recv ZSGSRD 36730
17-03-18 02:38:57.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.104 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.104 -07 000000455 INF: FPGA: Recv ZSGSRD 36736
17-03-18 02:38:57.114 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.114 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.114 -07 000000590 INF: FPGA: Recv ZSGSRD 36739
17-03-18 02:38:57.124 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.124 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:57.124 -07 000000561 INF: FPGA: Recv ZSGSRD 36738
17-03-18 02:38:57.134 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.134 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:57.134 -07 000000606 INF: FPGA: Recv ZPIEZORD 32900
17-03-18 02:38:57.144 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.144 -07 000000569 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.5 V.
17-03-18 02:38:57.144 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36737 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36738 (-175.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36730 (-175.4 uncal um), Max = 36742 (-175.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:38:57.144 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36737, posNoise = 5, negNoise = 7
17-03-18 02:38:57.144 -07 000000569 INF: Z Motor: After move to -0.176324, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:57.144 -07 000000569 INF: Z Motor: Settle wait time = 1456 ms, measure time = 103 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:38:57.144 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 02:38:57.194 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:38:57.194 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:38:57.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:57.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:57.194 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:57.194 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:57.194 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:38:57.194 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:57.204 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:38:57.204 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:38:57.204 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:38:57.204 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:38:57.214 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:38:57.214 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:38:57.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:38:57.254 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:38:57.554 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:38:57.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:38:57.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:38:57.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:38:57.594 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:38:57.594 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:38:57.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:38:57.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:38:57.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:57.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:38:57.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:38:57.694 -07 000000467 INF: Autofocus start
17-03-18 02:38:57.694 -07 000000467 INF: MeasureProfile start
17-03-18 02:38:57.694 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:57.694 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:57.704 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:38:57.704 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:38:57.704 -07 000000467 INF: MeasureProfile done
17-03-18 02:38:57.704 -07 000000467 INF: X=-32  Z correction [um]=-0.2344
17-03-18 02:38:57.704 -07 000000467 INF: Autofocus finished
17-03-18 02:38:57.874 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.986717,
17-03-18 02:38:57.904 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:38:57.904 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:38:57.904 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176329633463007. ----------
17-03-18 02:38:57.914 -07 000000610 INF: Cycle	102	Tile	8	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:38:57.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36979, sync = True, waitForSettling = True)
17-03-18 02:38:57.914 -07 000000610 INF: Z Motor: Moving to -0.169279 mm, started at -0.176330 mm, distance = 7.05 um
17-03-18 02:38:57.914 -07 000000610 INF: FPGA: Xmit ZDACW 36979\n [Z Motor]
17-03-18 02:38:57.914 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:38:57.924 -07 000000610 INF: FPGA: 'ZDACW 36979' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:38:57.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:57.924 -07 000000501 INF: FPGA: Recv ZDACR 36979
17-03-18 02:38:57.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:57.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:38:58.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.084 -07 000000629 INF: FPGA: Recv ZSGSRD 35642
17-03-18 02:38:58.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.094 -07 000000424 INF: FPGA: Recv ZSGSRD 35651
17-03-18 02:38:58.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.104 -07 000000467 INF: FPGA: Recv ZSGSRD 35641
17-03-18 02:38:58.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.114 -07 000000569 INF: FPGA: Recv ZSGSRD 35635
17-03-18 02:38:58.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.124 -07 000000501 INF: FPGA: Recv ZSGSRD 35645
17-03-18 02:38:58.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.134 -07 000000461 INF: FPGA: Recv ZSGSRD 35641
17-03-18 02:38:58.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.144 -07 000000590 INF: FPGA: Recv ZSGSRD 35640
17-03-18 02:38:58.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.154 -07 000000629 INF: FPGA: Recv ZSGSRD 35643
17-03-18 02:38:58.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.164 -07 000000579 INF: FPGA: Recv ZSGSRD 35641
17-03-18 02:38:58.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:38:58.174 -07 000000512 INF: FPGA: Recv ZSGSRD 35639
17-03-18 02:38:58.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:38:58.184 -07 000000455 INF: FPGA: Recv ZPIEZORD 31433
17-03-18 02:38:58.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:38:58.194 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.3 V.
17-03-18 02:38:58.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35642 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35641 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35635 (-168.4 uncal um), Max = 35651 (-168.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:38:58.194 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35642, posNoise = 9, negNoise = 7
17-03-18 02:38:58.194 -07 000000610 INF: Z Motor: After move to -0.169279, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:38:58.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:38:58.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:38:58.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:38:58.194 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:38:58.194 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:38:58.194 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:38:58.194 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:38:58.194 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:38:58.194 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:38:58.194 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:38:58.194 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:38:58.194 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:38:58.194 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:38:58.204 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:38:58.204 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:38:58.204 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:38:58.204 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:38:58.214 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:38:58.214 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:38:58.214 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:38:58.214 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:38:58.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37156 150\n [Camera]
17-03-18 02:38:58.414 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:38:58.814 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:38:58.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:38:58.814 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:58.814 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:58.814 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:38:58.814 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:38:58.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:38:58.824 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:58.824 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:58.824 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:38:59.004 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37156 782
17-03-18 02:38:59.154 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:38:59.214 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:38:59.214 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:38:59.214 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:59.214 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:38:59.214 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:38:59.214 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:59.214 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:38:59.214 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:38:59.214 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:38:59.224 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:38:59.354 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:38:59.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:38:59.354 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:38:59.454 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:38:59.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:38:59.464 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:38:59.464 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:38:59.464 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:38:59.464 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:38:59.464 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:38:59.544 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:38:59.544 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:38:59.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37156 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-18 02:38:59.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:38:59.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169295121167779. ------
17-03-18 02:38:59.544 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:38:59.544 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17584 mm
17-03-18 02:38:59.544 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:38:59.544 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:38:59.544 -07 000000576 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 02:38:59.554 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:38:59.554 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38411, sync = True, waitForSettling = False)
17-03-18 02:38:59.554 -07 000000461 INF: Z Motor: Moving to -0.175834 mm, started at -0.169295 mm, distance = -6.54 um
17-03-18 02:38:59.554 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:38:59.554 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:38:59.554 -07 000000424 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:38:59.564 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:38:59.564 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:38:59.564 -07 000000576 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:38:59.564 -07 000000576 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:38:59.564 -07 000000576 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:38:59.574 -07 000000461 INF: FPGA: Xmit ZDACW 38411\n [Z Motor]
17-03-18 02:38:59.574 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:38:59.584 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:38:59.584 -07 000000461 INF: FPGA: 'ZDACW 38411' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:38:59.594 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:38:59.594 -07 000000629 INF: FPGA: Recv ZDACR 38411
17-03-18 02:38:59.604 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:38:59.604 -07 000000461 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:38:59.764 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:38:59.764 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 02:38:59.854 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:38:59.854 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:38:59.854 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:59.854 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:59.854 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:38:59.854 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:38:59.854 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:38:59.864 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:38:59.864 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:38:59.864 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-18 02:38:59.954 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:38:59.954 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 02:39:00.004 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:00.004 -07 000000467 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:39:00.014 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:00.014 -07 000000576 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:00.014 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:39:00.014 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.839 mm, average velocity = 2.157 mm/sec
17-03-18 02:39:00.964 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:00.964 -07 000000561 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:39:00.974 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:00.974 -07 000000576 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:00.994 -07 000000576 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:00.994 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:39:00.994 -07 000000576 INF: Y Motor: Moved to 66.5386 after 1449 ms (table move)
17-03-18 02:39:01.004 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175834 mm (DAC = 38411)
17-03-18 02:39:01.004 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.004 -07 000000461 INF: FPGA: Recv ZSGSRD 36665
17-03-18 02:39:01.014 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:01.014 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.014 -07 000000629 INF: FPGA: Recv ZSGSRD 36655
17-03-18 02:39:01.024 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.024 -07 000000455 INF: FPGA: Recv ZSGSRD 36670
17-03-18 02:39:01.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.034 -07 000000501 INF: FPGA: Recv ZSGSRD 36667
17-03-18 02:39:01.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.044 -07 000000606 INF: FPGA: Recv ZSGSRD 36661
17-03-18 02:39:01.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.054 -07 000000462 INF: FPGA: Recv ZSGSRD 36660
17-03-18 02:39:01.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.064 -07 000000618 INF: FPGA: Recv ZSGSRD 36654
17-03-18 02:39:01.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.074 -07 000000590 INF: FPGA: Recv ZSGSRD 36663
17-03-18 02:39:01.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.084 -07 000000626 INF: FPGA: Recv ZSGSRD 36660
17-03-18 02:39:01.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:01.094 -07 000000430 INF: FPGA: Recv ZSGSRD 36660
17-03-18 02:39:01.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.104 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:01.104 -07 000000591 INF: FPGA: Recv ZPIEZORD 32795
17-03-18 02:39:01.114 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:01.114 -07 000000569 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.6 V.
17-03-18 02:39:01.114 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36662 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36660 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36654 (-174.9 uncal um), Max = 36670 (-175.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:39:01.114 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36662, posNoise = 8, negNoise = 8
17-03-18 02:39:01.114 -07 000000569 INF: Z Motor: After move to -0.175834, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:01.114 -07 000000569 INF: Z Motor: Settle wait time = 1452 ms, measure time = 108 ms (allowed 150 ms), total time = 1560 ms
17-03-18 02:39:01.114 -07 000000569 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:01.164 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:39:01.164 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:01.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:01.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:01.164 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:01.164 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:01.164 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:01.164 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:01.164 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:01.164 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:01.174 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:01.174 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:01.184 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:39:01.184 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:39:01.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:01.234 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:01.494 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:01.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:01.534 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:01.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:01.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:01.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) start.
17-03-18 02:39:01.574 -07 000000430 INF: FPGA: Recv @CAMSNAP 381
17-03-18 02:39:01.574 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:01.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 02:39:01.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 613074248, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:39:01.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:01.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:39:01.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:39:01.674 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:01.674 -07 000000618 INF: Autofocus start
17-03-18 02:39:01.674 -07 000000618 INF: MeasureProfile start
17-03-18 02:39:01.684 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:01.684 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:01.684 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:01.684 -07 000000618 INF: MeasureProfile done
17-03-18 02:39:01.684 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:39:01.694 -07 000000618 INF: Autofocus finished
17-03-18 02:39:01.884 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:01.884 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:39:01.884 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175847817552375. ----------
17-03-18 02:39:01.884 -07 000000610 INF: Cycle	102	Tile	9	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:01.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36908, sync = True, waitForSettling = True)
17-03-18 02:39:01.894 -07 000000610 INF: Z Motor: Moving to -0.168954 mm, started at -0.175848 mm, distance = 6.89 um
17-03-18 02:39:01.894 -07 000000610 INF: FPGA: Xmit ZDACW 36908\n [Z Motor]
17-03-18 02:39:01.894 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:39:01.904 -07 000000610 INF: FPGA: 'ZDACW 36908' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:01.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:01.904 -07 000000579 INF: FPGA: Recv ZDACR 36908
17-03-18 02:39:01.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:01.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:02.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.064 -07 000000591 INF: FPGA: Recv ZSGSRD 35589
17-03-18 02:39:02.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:02.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.074 -07 000000629 INF: FPGA: Recv ZSGSRD 35590
17-03-18 02:39:02.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.084 -07 000000576 INF: FPGA: Recv ZSGSRD 35591
17-03-18 02:39:02.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.094 -07 000000512 INF: FPGA: Recv ZSGSRD 35586
17-03-18 02:39:02.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.104 -07 000000502 INF: FPGA: Recv ZSGSRD 35599
17-03-18 02:39:02.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.114 -07 000000618 INF: FPGA: Recv ZSGSRD 35588
17-03-18 02:39:02.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.124 -07 000000569 INF: FPGA: Recv ZSGSRD 35590
17-03-18 02:39:02.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.134 -07 000000430 INF: FPGA: Recv ZSGSRD 35593
17-03-18 02:39:02.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.144 -07 000000501 INF: FPGA: Recv ZSGSRD 35588
17-03-18 02:39:02.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:02.154 -07 000000579 INF: FPGA: Recv ZSGSRD 35594
17-03-18 02:39:02.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:02.164 -07 000000590 INF: FPGA: Recv ZPIEZORD 31362
17-03-18 02:39:02.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:02.174 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.3 V.
17-03-18 02:39:02.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35591 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35590 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35586 (-168.1 uncal um), Max = 35599 (-168.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:02.174 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35591, posNoise = 8, negNoise = 5
17-03-18 02:39:02.174 -07 000000610 INF: Z Motor: After move to -0.168954, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:02.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:39:02.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:02.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:02.174 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:02.174 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:02.174 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:02.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:02.174 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:02.174 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:02.174 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:39:02.174 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:02.174 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:39:02.174 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:02.174 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:02.174 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:02.184 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:39:02.184 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:02.184 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:39:02.184 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:39:02.194 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:39:02.194 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:39:02.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37085 150\n [Camera]
17-03-18 02:39:02.394 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:02.794 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:02.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:02.794 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:02.794 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:02.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:02.794 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:02.794 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:02.794 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:39:02.804 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:02.804 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:39:02.984 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37085 783
17-03-18 02:39:03.134 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:03.174 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:39:03.174 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:39:03.174 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:03.174 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:39:03.174 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:39:03.174 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:03.184 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:03.184 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:39:03.184 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:39:03.184 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:39:03.234 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.023489,
17-03-18 02:39:03.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:03.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:03.324 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:03.324 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:03.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:03.324 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:03.324 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:03.324 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:39:03.334 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:03.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:39:03.514 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:39:03.514 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:03.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37085 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:39:03.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:03.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168967486348549. ------
17-03-18 02:39:03.524 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:03.524 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17578 mm
17-03-18 02:39:03.524 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:03.634 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:03.634 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-18 02:39:03.634 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:39:03.634 -07 000000591 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 02:39:03.634 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:03.634 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38398, sync = True, waitForSettling = False)
17-03-18 02:39:03.634 -07 000000629 INF: Z Motor: Moving to -0.175775 mm, started at -0.168967 mm, distance = -6.81 um
17-03-18 02:39:03.644 -07 000000629 INF: FPGA: Xmit ZDACW 38398\n [Z Motor]
17-03-18 02:39:03.644 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:39:03.654 -07 000000629 INF: FPGA: 'ZDACW 38398' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:39:03.654 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:03.654 -07 000000467 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:39:03.664 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:39:03.664 -07 000000591 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:03.664 -07 000000591 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:03.664 -07 000000591 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:39:03.664 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:03.664 -07 000000618 INF: FPGA: Recv ZDACR 38398
17-03-18 02:39:03.674 -07 000000629 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:39:03.674 -07 000000629 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 02:39:03.674 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:03.714 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:39:03.714 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:39:03.714 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:03.714 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:39:03.714 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:39:03.714 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:03.724 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:03.724 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:39:03.724 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:39:03.724 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:39:03.834 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:03.834 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 203 ms overall
17-03-18 02:39:04.044 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:39:04.044 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:39:04.094 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:04.094 -07 000000430 INF: FPGA: Recv YRDPOS 137976
17-03-18 02:39:04.104 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:39:04.104 -07 000000591 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:04.104 -07 000000591 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 02:39:04.104 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-18 02:39:05.054 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:05.054 -07 000000579 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:39:05.064 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:05.064 -07 000000591 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:05.084 -07 000000591 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:05.084 -07 000000591 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:39:05.084 -07 000000591 INF: Y Motor: Moved to 67.3716 after 1452 ms (table move)
17-03-18 02:39:05.094 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175775 mm (DAC = 38398)
17-03-18 02:39:05.094 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.094 -07 000000626 INF: FPGA: Recv ZSGSRD 36648
17-03-18 02:39:05.104 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:05.104 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.104 -07 000000467 INF: FPGA: Recv ZSGSRD 36654
17-03-18 02:39:05.114 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.114 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.114 -07 000000502 INF: FPGA: Recv ZSGSRD 36655
17-03-18 02:39:05.124 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.124 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.124 -07 000000462 INF: FPGA: Recv ZSGSRD 36652
17-03-18 02:39:05.134 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.134 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.134 -07 000000430 INF: FPGA: Recv ZSGSRD 36655
17-03-18 02:39:05.144 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.144 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.144 -07 000000576 INF: FPGA: Recv ZSGSRD 36652
17-03-18 02:39:05.154 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.154 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.154 -07 000000512 INF: FPGA: Recv ZSGSRD 36652
17-03-18 02:39:05.164 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.164 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.164 -07 000000461 INF: FPGA: Recv ZSGSRD 36656
17-03-18 02:39:05.174 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.174 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.174 -07 000000462 INF: FPGA: Recv ZSGSRD 36651
17-03-18 02:39:05.184 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.184 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:05.184 -07 000000430 INF: FPGA: Recv ZSGSRD 36652
17-03-18 02:39:05.194 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.194 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:05.194 -07 000000591 INF: FPGA: Recv ZPIEZORD 32797
17-03-18 02:39:05.204 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.204 -07 000000444 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.5 V.
17-03-18 02:39:05.204 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36653 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36652 (-174.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36648 (-174.9 uncal um), Max = 36656 (-174.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:05.204 -07 000000444 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36653, posNoise = 3, negNoise = 5
17-03-18 02:39:05.204 -07 000000444 INF: Z Motor: After move to -0.175775, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:05.204 -07 000000444 INF: Z Motor: Settle wait time = 1454 ms, measure time = 110 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:39:05.204 -07 000000444 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:05.244 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-18 02:39:05.244 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:05.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:05.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:05.244 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:05.244 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:05.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:05.244 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:05.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:05.244 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:05.254 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:39:05.254 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:05.254 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:39:05.254 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:39:05.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:05.304 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:05.604 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:05.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:05.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:05.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:39:05.644 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:05.644 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:05.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:39:05.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:39:05.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:05.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:39:05.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:39:05.744 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:05.744 -07 000000444 INF: Autofocus start
17-03-18 02:39:05.744 -07 000000444 INF: MeasureProfile start
17-03-18 02:39:05.744 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:05.754 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:05.754 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:05.754 -07 000000444 INF: MeasureProfile done
17-03-18 02:39:05.754 -07 000000444 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:39:05.754 -07 000000444 INF: Autofocus finished
17-03-18 02:39:05.954 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:05.954 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:05.954 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175789999643099. ----------
17-03-18 02:39:05.954 -07 000000610 INF: Cycle	102	Tile	10	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:05.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36931, sync = True, waitForSettling = True)
17-03-18 02:39:05.964 -07 000000610 INF: Z Motor: Moving to -0.169059 mm, started at -0.175790 mm, distance = 6.73 um
17-03-18 02:39:05.964 -07 000000610 INF: FPGA: Xmit ZDACW 36931\n [Z Motor]
17-03-18 02:39:05.964 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:39:05.974 -07 000000610 INF: FPGA: 'ZDACW 36931' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:05.974 -07 000000501 INF: FPGA: Recv ZDACR 36931
17-03-18 02:39:05.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:05.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:06.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.134 -07 000000467 INF: FPGA: Recv ZSGSRD 35610
17-03-18 02:39:06.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:06.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.144 -07 000000576 INF: FPGA: Recv ZSGSRD 35599
17-03-18 02:39:06.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.154 -07 000000512 INF: FPGA: Recv ZSGSRD 35614
17-03-18 02:39:06.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.164 -07 000000618 INF: FPGA: Recv ZSGSRD 35601
17-03-18 02:39:06.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.174 -07 000000579 INF: FPGA: Recv ZSGSRD 35607
17-03-18 02:39:06.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.184 -07 000000462 INF: FPGA: Recv ZSGSRD 35607
17-03-18 02:39:06.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.194 -07 000000590 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:39:06.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.204 -07 000000502 INF: FPGA: Recv ZSGSRD 35614
17-03-18 02:39:06.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.214 -07 000000591 INF: FPGA: Recv ZSGSRD 35609
17-03-18 02:39:06.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:06.224 -07 000000569 INF: FPGA: Recv ZSGSRD 35607
17-03-18 02:39:06.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:06.234 -07 000000424 INF: FPGA: Recv ZPIEZORD 31362
17-03-18 02:39:06.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:06.244 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.4 V.
17-03-18 02:39:06.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35607 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35607 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35599 (-168.1 uncal um), Max = 35614 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:39:06.244 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35607, posNoise = 7, negNoise = 8
17-03-18 02:39:06.244 -07 000000610 INF: Z Motor: After move to -0.169059, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:06.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:39:06.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:06.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:06.244 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:06.244 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:06.244 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:06.244 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:06.244 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:06.244 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:06.244 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:39:06.244 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:06.244 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:06.244 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:06.254 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:39:06.254 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:06.254 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:39:06.254 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:06.254 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:39:06.254 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:39:06.254 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:39:06.254 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:39:06.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 37108 150\n [Camera]
17-03-18 02:39:06.464 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:06.494 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:06.494 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:06.854 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:06.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:06.854 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:06.864 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:06.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:06.864 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:06.864 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:06.864 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:39:06.864 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:06.864 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:39:07.054 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37108 782
17-03-18 02:39:07.204 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:07.244 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:39:07.254 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:39:07.254 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:07.254 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:39:07.254 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:39:07.254 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:07.254 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:07.254 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:39:07.254 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:07.264 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:39:07.394 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:07.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:07.394 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:07.394 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:07.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:07.394 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:07.394 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:07.394 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:39:07.394 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:07.394 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:39:07.584 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:39:07.584 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:07.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 37108 150' command took 2 ms to send, 1314 ms to get response, and 1322 ms overall
17-03-18 02:39:07.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:07.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169070273742817. ------
17-03-18 02:39:07.584 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:07.584 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17527 mm
17-03-18 02:39:07.584 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:07.594 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:39:07.594 -07 000000455 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:39:07.594 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:07.594 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:07.594 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:39:07.594 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38287, sync = True, waitForSettling = False)
17-03-18 02:39:07.594 -07 000000424 INF: Z Motor: Moving to -0.175267 mm, started at -0.169070 mm, distance = -6.20 um
17-03-18 02:39:07.594 -07 000000576 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:39:07.604 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:07.604 -07 000000455 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:07.604 -07 000000455 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:07.604 -07 000000455 INF: Y Motor: Moving 1346 steps-24
17-03-18 02:39:07.604 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:07.614 -07 000000424 INF: FPGA: Xmit ZDACW 38287\n [Z Motor]
17-03-18 02:39:07.614 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:39:07.624 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:07.624 -07 000000424 INF: FPGA: 'ZDACW 38287' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:39:07.634 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:07.634 -07 000000618 INF: FPGA: Recv ZDACR 38287
17-03-18 02:39:07.644 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:39:07.644 -07 000000424 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:39:07.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:39:07.794 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:39:07.794 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:07.794 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:39:07.794 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:39:07.794 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:07.804 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:07.804 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:39:07.804 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:07.804 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:07.804 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 02:39:07.814 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:39:07.994 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:39:07.994 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:39:08.044 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:08.044 -07 000000591 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:39:08.054 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:39:08.054 -07 000000455 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:08.054 -07 000000455 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:39:08.054 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-18 02:39:08.604 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.004458,
17-03-18 02:39:09.004 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:09.004 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:39:09.014 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:09.014 -07 000000455 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:09.034 -07 000000455 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:09.034 -07 000000455 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:39:09.034 -07 000000455 INF: Y Motor: Moved to 68.2051 after 1445 ms (table move)
17-03-18 02:39:09.044 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175267 mm (DAC = 38287)
17-03-18 02:39:09.044 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.044 -07 000000626 INF: FPGA: Recv ZSGSRD 36575
17-03-18 02:39:09.054 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:09.054 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.054 -07 000000561 INF: FPGA: Recv ZSGSRD 36573
17-03-18 02:39:09.064 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.064 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.064 -07 000000444 INF: FPGA: Recv ZSGSRD 36572
17-03-18 02:39:09.074 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.074 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.074 -07 000000629 INF: FPGA: Recv ZSGSRD 36572
17-03-18 02:39:09.084 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.084 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.084 -07 000000569 INF: FPGA: Recv ZSGSRD 36565
17-03-18 02:39:09.094 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.094 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.094 -07 000000576 INF: FPGA: Recv ZSGSRD 36574
17-03-18 02:39:09.104 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.104 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.104 -07 000000561 INF: FPGA: Recv ZSGSRD 36568
17-03-18 02:39:09.114 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.114 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.114 -07 000000444 INF: FPGA: Recv ZSGSRD 36572
17-03-18 02:39:09.124 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.124 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.124 -07 000000467 INF: FPGA: Recv ZSGSRD 36581
17-03-18 02:39:09.134 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.134 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:09.134 -07 000000569 INF: FPGA: Recv ZSGSRD 36571
17-03-18 02:39:09.144 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.144 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:09.144 -07 000000618 INF: FPGA: Recv ZPIEZORD 32664
17-03-18 02:39:09.154 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.154 -07 000000606 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.6 V.
17-03-18 02:39:09.154 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36572 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36572 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36565 (-174.3 uncal um), Max = 36581 (-174.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:39:09.154 -07 000000606 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36572, posNoise = 9, negNoise = 7
17-03-18 02:39:09.154 -07 000000606 INF: Z Motor: After move to -0.175267, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:09.154 -07 000000606 INF: Z Motor: Settle wait time = 1445 ms, measure time = 111 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:39:09.154 -07 000000606 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:09.194 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 02:39:09.194 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:09.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:09.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:09.194 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:09.194 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:09.194 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:09.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:09.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:09.194 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:09.204 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:09.204 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:09.214 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:39:09.214 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:39:09.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:09.264 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:09.564 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:09.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:09.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:09.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:39:09.604 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:09.604 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:09.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:39:09.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:39:09.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:09.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:39:09.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:39:09.704 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:09.704 -07 000000579 INF: Autofocus start
17-03-18 02:39:09.704 -07 000000579 INF: MeasureProfile start
17-03-18 02:39:09.704 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:09.714 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:39:09.714 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:09.724 -07 000000579 INF: MeasureProfile done
17-03-18 02:39:09.724 -07 000000579 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:39:09.724 -07 000000579 INF: Autofocus finished
17-03-18 02:39:09.914 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:09.914 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:09.914 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175269638459617. ----------
17-03-18 02:39:09.924 -07 000000610 INF: Cycle	102	Tile	11	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:09.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36820, sync = True, waitForSettling = True)
17-03-18 02:39:09.924 -07 000000610 INF: Z Motor: Moving to -0.168551 mm, started at -0.175270 mm, distance = 6.72 um
17-03-18 02:39:09.924 -07 000000610 INF: FPGA: Xmit ZDACW 36820\n [Z Motor]
17-03-18 02:39:09.924 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:39:09.934 -07 000000610 INF: FPGA: 'ZDACW 36820' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:09.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:09.934 -07 000000467 INF: FPGA: Recv ZDACR 36820
17-03-18 02:39:09.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:09.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:10.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.094 -07 000000629 INF: FPGA: Recv ZSGSRD 35525
17-03-18 02:39:10.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:10.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.104 -07 000000455 INF: FPGA: Recv ZSGSRD 35531
17-03-18 02:39:10.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.114 -07 000000461 INF: FPGA: Recv ZSGSRD 35525
17-03-18 02:39:10.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.124 -07 000000591 INF: FPGA: Recv ZSGSRD 35528
17-03-18 02:39:10.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.134 -07 000000501 INF: FPGA: Recv ZSGSRD 35528
17-03-18 02:39:10.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.144 -07 000000569 INF: FPGA: Recv ZSGSRD 35524
17-03-18 02:39:10.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.154 -07 000000579 INF: FPGA: Recv ZSGSRD 35537
17-03-18 02:39:10.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.164 -07 000000467 INF: FPGA: Recv ZSGSRD 35531
17-03-18 02:39:10.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.174 -07 000000512 INF: FPGA: Recv ZSGSRD 35525
17-03-18 02:39:10.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:10.184 -07 000000626 INF: FPGA: Recv ZSGSRD 35525
17-03-18 02:39:10.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:10.194 -07 000000618 INF: FPGA: Recv ZPIEZORD 31303
17-03-18 02:39:10.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:10.204 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.3 V.
17-03-18 02:39:10.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35528 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35526 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35524 (-167.7 uncal um), Max = 35537 (-167.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:39:10.204 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35528, posNoise = 9, negNoise = 4
17-03-18 02:39:10.204 -07 000000610 INF: Z Motor: After move to -0.168551, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:10.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:39:10.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:10.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:10.204 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:10.204 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:10.204 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:10.204 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:10.204 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:10.204 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:10.204 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:39:10.204 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:10.204 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:39:10.204 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:10.214 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:39:10.214 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:10.214 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 02:39:10.214 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:10.224 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:39:10.224 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:39:10.224 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:39:10.224 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:39:10.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36997 150\n [Camera]
17-03-18 02:39:10.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:10.824 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:10.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:10.824 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:10.824 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:10.824 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:39:10.824 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:10.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:10.824 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:10.824 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:10.824 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:39:11.014 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36997 782
17-03-18 02:39:11.164 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:11.194 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:39:11.194 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:39:11.194 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:11.204 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:39:11.204 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:39:11.204 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:11.204 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:11.204 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:39:11.204 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:11.214 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:39:11.354 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:11.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:11.354 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:11.354 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:11.354 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:39:11.354 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:11.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:11.354 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:11.354 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:11.354 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:39:11.524 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:11.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:11.544 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:39:11.544 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:11.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36997 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:39:11.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:11.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168562760983618. ------
17-03-18 02:39:11.554 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17520 mm
17-03-18 02:39:11.554 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:11.554 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:11.554 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38272, sync = True, waitForSettling = False)
17-03-18 02:39:11.554 -07 000000579 INF: Z Motor: Moving to -0.175198 mm, started at -0.168563 mm, distance = -6.64 um
17-03-18 02:39:11.554 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:39:11.554 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 02:39:11.554 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:11.564 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:11.564 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:11.564 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:39:11.574 -07 000000579 INF: FPGA: Xmit ZDACW 38272\n [Z Motor]
17-03-18 02:39:11.574 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:39:11.574 -07 000000626 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:11.574 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:11.574 -07 000000626 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:39:11.574 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:39:11.584 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:11.584 -07 000000579 INF: FPGA: 'ZDACW 38272' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:39:11.594 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:11.604 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:11.604 -07 000000569 INF: FPGA: Recv ZDACR 38272
17-03-18 02:39:11.614 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:39:11.614 -07 000000579 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:39:11.744 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:39:11.744 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:39:11.744 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:11.744 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:39:11.744 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:39:11.744 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:11.744 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:11.754 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:39:11.754 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:39:11.754 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:39:11.784 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:11.784 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:39:11.964 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:39:11.964 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:39:12.014 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:12.014 -07 000000501 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:39:12.024 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:12.024 -07 000000626 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:12.024 -07 000000626 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:39:12.024 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 02:39:12.974 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:12.974 -07 000000590 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:39:12.984 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:12.984 -07 000000626 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:13.004 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:13.004 -07 000000626 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:39:13.004 -07 000000626 INF: Y Motor: Moved to 69.0269 after 1451 ms (table move)
17-03-18 02:39:13.014 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175198 mm (DAC = 38272)
17-03-18 02:39:13.014 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.014 -07 000000424 INF: FPGA: Recv ZSGSRD 36557
17-03-18 02:39:13.024 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:13.024 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.024 -07 000000590 INF: FPGA: Recv ZSGSRD 36565
17-03-18 02:39:13.034 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.034 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.034 -07 000000461 INF: FPGA: Recv ZSGSRD 36567
17-03-18 02:39:13.044 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.044 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.044 -07 000000579 INF: FPGA: Recv ZSGSRD 36560
17-03-18 02:39:13.054 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.054 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.054 -07 000000462 INF: FPGA: Recv ZSGSRD 36557
17-03-18 02:39:13.064 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.064 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.064 -07 000000618 INF: FPGA: Recv ZSGSRD 36564
17-03-18 02:39:13.074 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.074 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.074 -07 000000626 INF: FPGA: Recv ZSGSRD 36557
17-03-18 02:39:13.084 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.084 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.084 -07 000000461 INF: FPGA: Recv ZSGSRD 36559
17-03-18 02:39:13.094 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.094 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.094 -07 000000569 INF: FPGA: Recv ZSGSRD 36561
17-03-18 02:39:13.104 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.104 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:13.104 -07 000000561 INF: FPGA: Recv ZSGSRD 36568
17-03-18 02:39:13.114 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.114 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:13.114 -07 000000618 INF: FPGA: Recv ZPIEZORD 32701
17-03-18 02:39:13.124 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.124 -07 000000455 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.5 V.
17-03-18 02:39:13.124 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36562 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36560 (-174.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36557 (-174.3 uncal um), Max = 36568 (-174.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:13.124 -07 000000455 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36562, posNoise = 6, negNoise = 5
17-03-18 02:39:13.124 -07 000000455 INF: Z Motor: After move to -0.175198, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:13.124 -07 000000455 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:39:13.124 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:13.174 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:39:13.174 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:13.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:13.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:13.174 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:13.174 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:13.174 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:13.174 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:13.174 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:13.174 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:13.184 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:13.184 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:13.184 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:39:13.184 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:39:13.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:13.234 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:13.534 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:13.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:13.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:13.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:39:13.574 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:13.574 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:13.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:39:13.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:39:13.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:13.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:39:13.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:39:13.674 -07 000000512 INF: Autofocus start
17-03-18 02:39:13.674 -07 000000512 INF: MeasureProfile start
17-03-18 02:39:13.684 -07 000000512 INF: MeasureProfile done
17-03-18 02:39:13.684 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:39:13.684 -07 000000512 INF: Autofocus finished
17-03-18 02:39:13.694 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:13.694 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:13.704 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:39:13.714 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:13.914 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:13.914 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 02:39:13.914 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175205396338199. ----------
17-03-18 02:39:13.924 -07 000000610 INF: Cycle	102	Tile	12	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:13.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36787, sync = True, waitForSettling = True)
17-03-18 02:39:13.924 -07 000000610 INF: Z Motor: Moving to -0.168400 mm, started at -0.175205 mm, distance = 6.81 um
17-03-18 02:39:13.924 -07 000000610 INF: FPGA: Xmit ZDACW 36787\n [Z Motor]
17-03-18 02:39:13.924 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:39:13.934 -07 000000610 INF: FPGA: 'ZDACW 36787' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:13.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:13.934 -07 000000576 INF: FPGA: Recv ZDACR 36787
17-03-18 02:39:13.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:13.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:13.974 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.038479,
17-03-18 02:39:14.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.094 -07 000000569 INF: FPGA: Recv ZSGSRD 35502
17-03-18 02:39:14.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.104 -07 000000461 INF: FPGA: Recv ZSGSRD 35505
17-03-18 02:39:14.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:14.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.114 -07 000000501 INF: FPGA: Recv ZSGSRD 35501
17-03-18 02:39:14.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.124 -07 000000467 INF: FPGA: Recv ZSGSRD 35504
17-03-18 02:39:14.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.134 -07 000000590 INF: FPGA: Recv ZSGSRD 35505
17-03-18 02:39:14.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.144 -07 000000512 INF: FPGA: Recv ZSGSRD 35504
17-03-18 02:39:14.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.154 -07 000000591 INF: FPGA: Recv ZSGSRD 35501
17-03-18 02:39:14.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.164 -07 000000501 INF: FPGA: Recv ZSGSRD 35508
17-03-18 02:39:14.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.174 -07 000000462 INF: FPGA: Recv ZSGSRD 35499
17-03-18 02:39:14.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:14.184 -07 000000590 INF: FPGA: Recv ZSGSRD 35497
17-03-18 02:39:14.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:14.194 -07 000000606 INF: FPGA: Recv ZPIEZORD 31267
17-03-18 02:39:14.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:14.204 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.613 V. Piezo Error = -9.3 V.
17-03-18 02:39:14.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35503 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35503 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35497 (-167.5 uncal um), Max = 35508 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:39:14.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35503, posNoise = 5, negNoise = 6
17-03-18 02:39:14.204 -07 000000610 INF: Z Motor: After move to -0.168400, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:14.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:39:14.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:14.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:14.204 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:14.204 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:14.204 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:14.204 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:14.204 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:14.204 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:14.204 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:39:14.204 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:14.204 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:39:14.204 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:14.204 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:14.204 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:14.204 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:39:14.204 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:14.214 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:39:14.214 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:39:14.214 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:39:14.224 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:39:14.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36964 150\n [Camera]
17-03-18 02:39:14.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:14.814 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:14.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:14.824 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:14.824 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:14.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:14.824 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:14.824 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:14.824 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:39:14.824 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:14.824 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:39:15.014 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36964 782
17-03-18 02:39:15.164 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:15.194 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:39:15.194 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 02:39:15.194 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:15.204 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:39:15.204 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:39:15.204 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:15.204 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:15.204 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:39:15.204 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:15.214 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:39:15.354 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:15.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:15.354 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:15.354 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:15.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:15.354 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:15.364 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:15.364 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:39:15.364 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:15.364 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:39:15.544 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:39:15.544 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:15.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36964 150' command took 2 ms to send, 1314 ms to get response, and 1323 ms overall
17-03-18 02:39:15.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:15.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168402155680074. ------
17-03-18 02:39:15.664 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17431 mm
17-03-18 02:39:15.664 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:15.664 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:15.664 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:39:15.664 -07 000000430 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 02:39:15.664 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 38077, sync = True, waitForSettling = False)
17-03-18 02:39:15.664 -07 000000606 INF: Z Motor: Moving to -0.174305 mm, started at -0.168402 mm, distance = -5.90 um
17-03-18 02:39:15.674 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:15.674 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:15.674 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:39:15.674 -07 000000590 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:39:15.684 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:15.684 -07 000000430 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:15.684 -07 000000430 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:15.684 -07 000000430 INF: Y Motor: Moving 1353 steps-33
17-03-18 02:39:15.684 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:15.694 -07 000000606 INF: FPGA: Xmit ZDACW 38077\n [Z Motor]
17-03-18 02:39:15.694 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:39:15.704 -07 000000606 INF: FPGA: 'ZDACW 38077' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:39:15.704 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:15.714 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:15.714 -07 000000561 INF: FPGA: Recv ZDACR 38077
17-03-18 02:39:15.724 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:39:15.724 -07 000000606 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:39:15.764 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:39:15.764 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:39:15.764 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:15.764 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:39:15.764 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:39:15.764 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:15.764 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:15.764 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:15.764 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:39:15.774 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:39:15.884 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:15.884 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:39:16.084 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:39:16.084 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 02:39:16.124 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:16.124 -07 000000512 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:39:16.134 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:39:16.134 -07 000000430 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:16.134 -07 000000430 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:39:16.134 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.846 mm, average velocity = 2.109 mm/sec
17-03-18 02:39:16.494 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:16.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:17.084 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:17.084 -07 000000444 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:39:17.094 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:17.094 -07 000000430 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:17.114 -07 000000430 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:17.114 -07 000000430 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:39:17.114 -07 000000430 INF: Y Motor: Moved to 69.8628 after 1449 ms (table move)
17-03-18 02:39:17.124 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174305 mm (DAC = 38077)
17-03-18 02:39:17.124 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.124 -07 000000618 INF: FPGA: Recv ZSGSRD 36424
17-03-18 02:39:17.134 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:17.134 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.134 -07 000000561 INF: FPGA: Recv ZSGSRD 36425
17-03-18 02:39:17.144 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.144 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.144 -07 000000501 INF: FPGA: Recv ZSGSRD 36431
17-03-18 02:39:17.154 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.154 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.154 -07 000000512 INF: FPGA: Recv ZSGSRD 36420
17-03-18 02:39:17.164 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.164 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.164 -07 000000430 INF: FPGA: Recv ZSGSRD 36425
17-03-18 02:39:17.174 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.174 -07 000000629 INF: FPGA: Recv ZSGSRD 36421
17-03-18 02:39:17.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.184 -07 000000561 INF: FPGA: Recv ZSGSRD 36418
17-03-18 02:39:17.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.194 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.194 -07 000000501 INF: FPGA: Recv ZSGSRD 36431
17-03-18 02:39:17.204 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.204 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.204 -07 000000590 INF: FPGA: Recv ZSGSRD 36421
17-03-18 02:39:17.214 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.214 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:17.214 -07 000000606 INF: FPGA: Recv ZSGSRD 36431
17-03-18 02:39:17.224 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.224 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:17.224 -07 000000461 INF: FPGA: Recv ZPIEZORD 32507
17-03-18 02:39:17.234 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:17.234 -07 000000591 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.810 V. Piezo Error = -8.7 V.
17-03-18 02:39:17.234 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36425 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36424 (-173.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36418 (-173.4 uncal um), Max = 36431 (-173.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:39:17.234 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36425, posNoise = 6, negNoise = 7
17-03-18 02:39:17.234 -07 000000591 INF: Z Motor: After move to -0.174305, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:17.234 -07 000000591 INF: Z Motor: Settle wait time = 1451 ms, measure time = 110 ms (allowed 150 ms), total time = 1561 ms
17-03-18 02:39:17.234 -07 000000591 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:17.274 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 02:39:17.274 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:17.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:17.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:17.274 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:17.274 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:17.274 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:17.274 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:17.274 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:39:17.274 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:17.284 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:17.284 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:17.294 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:39:17.294 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:39:17.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:17.344 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:17.644 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:17.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:17.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:17.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:39:17.684 -07 000000590 INF: FPGA: Recv @CAMSNAP 382
17-03-18 02:39:17.684 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:17.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 02:39:17.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:39:17.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:17.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:39:17.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:39:17.784 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:17.784 -07 000000502 INF: Autofocus start
17-03-18 02:39:17.784 -07 000000502 INF: MeasureProfile start
17-03-18 02:39:17.784 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:17.794 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:17.794 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:17.804 -07 000000502 INF: MeasureProfile done
17-03-18 02:39:17.804 -07 000000502 INF: X=96  Z correction [um]=0.4193256
17-03-18 02:39:17.804 -07 000000502 INF: Autofocus finished
17-03-18 02:39:17.994 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:17.994 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:17.994 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174325279274778. ----------
17-03-18 02:39:17.994 -07 000000610 INF: Cycle	102	Tile	13	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:18.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36682, sync = True, waitForSettling = True)
17-03-18 02:39:18.004 -07 000000610 INF: Z Motor: Moving to -0.167919 mm, started at -0.174325 mm, distance = 6.41 um
17-03-18 02:39:18.004 -07 000000610 INF: FPGA: Xmit ZDACW 36682\n [Z Motor]
17-03-18 02:39:18.004 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:39:18.014 -07 000000610 INF: FPGA: 'ZDACW 36682' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:18.014 -07 000000462 INF: FPGA: Recv ZDACR 36682
17-03-18 02:39:18.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:18.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.174 -07 000000591 INF: FPGA: Recv ZSGSRD 35427
17-03-18 02:39:18.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:18.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.184 -07 000000576 INF: FPGA: Recv ZSGSRD 35427
17-03-18 02:39:18.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.194 -07 000000461 INF: FPGA: Recv ZSGSRD 35427
17-03-18 02:39:18.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.204 -07 000000455 INF: FPGA: Recv ZSGSRD 35433
17-03-18 02:39:18.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.214 -07 000000461 INF: FPGA: Recv ZSGSRD 35434
17-03-18 02:39:18.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.224 -07 000000591 INF: FPGA: Recv ZSGSRD 35424
17-03-18 02:39:18.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.234 -07 000000424 INF: FPGA: Recv ZSGSRD 35427
17-03-18 02:39:18.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.244 -07 000000618 INF: FPGA: Recv ZSGSRD 35428
17-03-18 02:39:18.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.254 -07 000000444 INF: FPGA: Recv ZSGSRD 35430
17-03-18 02:39:18.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:18.264 -07 000000629 INF: FPGA: Recv ZSGSRD 35427
17-03-18 02:39:18.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:18.274 -07 000000501 INF: FPGA: Recv ZPIEZORD 31175
17-03-18 02:39:18.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:18.284 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.4 V.
17-03-18 02:39:18.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35428 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35427 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35424 (-167.0 uncal um), Max = 35434 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:39:18.284 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35428, posNoise = 6, negNoise = 4
17-03-18 02:39:18.284 -07 000000610 INF: Z Motor: After move to -0.167919, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:18.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:39:18.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:18.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:18.284 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:18.284 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:18.284 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:18.284 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:18.284 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:18.284 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:18.284 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:39:18.284 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:18.284 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:18.284 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:18.294 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:18.294 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:18.294 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:39:18.294 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:18.294 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:39:18.294 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:39:18.304 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:39:18.304 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:39:18.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36858 150\n [Camera]
17-03-18 02:39:18.504 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:18.904 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:18.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:18.904 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:18.904 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:18.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:18.904 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:18.904 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:18.904 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:39:18.914 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:18.914 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:39:19.094 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36858 782
17-03-18 02:39:19.244 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:19.284 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:39:19.284 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:39:19.284 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:19.284 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:39:19.284 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:39:19.284 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:19.284 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:19.284 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:39:19.284 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:19.294 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:39:19.344 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.016692,
17-03-18 02:39:19.434 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:19.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:19.434 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:19.434 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:19.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:19.434 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:19.434 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:39:19.434 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:19.434 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:19.434 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:39:19.624 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:39:19.624 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:19.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36858 150' command took 2 ms to send, 1318 ms to get response, and 1325 ms overall
17-03-18 02:39:19.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:19.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167920339769442. ------
17-03-18 02:39:19.634 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:19.634 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17432 mm
17-03-18 02:39:19.634 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:19.634 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:39:19.634 -07 000000629 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 02:39:19.634 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38081, sync = True, waitForSettling = False)
17-03-18 02:39:19.634 -07 000000502 INF: Z Motor: Moving to -0.174324 mm, started at -0.167920 mm, distance = -6.40 um
17-03-18 02:39:19.634 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:19.644 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:39:19.644 -07 000000502 INF: FPGA: Xmit ZDACW 38081\n [Z Motor]
17-03-18 02:39:19.644 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:39:19.654 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:19.654 -07 000000502 INF: FPGA: 'ZDACW 38081' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:39:19.654 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:39:19.664 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:19.664 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:39:19.664 -07 000000629 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:19.664 -07 000000629 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:19.664 -07 000000629 INF: Y Motor: Moving 1344 steps-20
17-03-18 02:39:19.674 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:19.674 -07 000000455 INF: FPGA: Recv ZDACR 38081
17-03-18 02:39:19.684 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:39:19.684 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:39:19.684 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:19.834 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:39:19.834 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:39:19.834 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:39:19.834 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:19.834 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:39:19.834 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:19.844 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:19.844 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:19.844 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:39:19.844 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:39:19.864 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:19.864 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:39:20.054 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:39:20.054 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:39:20.104 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:20.104 -07 000000606 INF: FPGA: Recv YRDPOS 144768
17-03-18 02:39:20.114 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:20.114 -07 000000629 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:20.114 -07 000000629 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:39:20.114 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 02:39:21.064 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:21.064 -07 000000512 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:39:21.074 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:21.074 -07 000000629 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:21.094 -07 000000629 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:21.094 -07 000000629 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:39:21.094 -07 000000629 INF: Y Motor: Moved to 70.6880 after 1461 ms (table move)
17-03-18 02:39:21.104 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174324 mm (DAC = 38081)
17-03-18 02:39:21.104 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.104 -07 000000444 INF: FPGA: Recv ZSGSRD 36427
17-03-18 02:39:21.114 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:21.114 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.114 -07 000000569 INF: FPGA: Recv ZSGSRD 36431
17-03-18 02:39:21.124 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.124 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.124 -07 000000461 INF: FPGA: Recv ZSGSRD 36427
17-03-18 02:39:21.134 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.134 -07 000000590 INF: FPGA: Recv ZSGSRD 36429
17-03-18 02:39:21.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.144 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.144 -07 000000629 INF: FPGA: Recv ZSGSRD 36423
17-03-18 02:39:21.154 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.154 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.154 -07 000000444 INF: FPGA: Recv ZSGSRD 36423
17-03-18 02:39:21.164 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.164 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.164 -07 000000462 INF: FPGA: Recv ZSGSRD 36431
17-03-18 02:39:21.174 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.174 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.174 -07 000000455 INF: FPGA: Recv ZSGSRD 36428
17-03-18 02:39:21.184 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.184 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.184 -07 000000618 INF: FPGA: Recv ZSGSRD 36428
17-03-18 02:39:21.194 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.194 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:21.194 -07 000000579 INF: FPGA: Recv ZSGSRD 36433
17-03-18 02:39:21.204 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.204 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:21.204 -07 000000461 INF: FPGA: Recv ZPIEZORD 32527
17-03-18 02:39:21.214 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:21.214 -07 000000424 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.811 V. Piezo Error = -8.6 V.
17-03-18 02:39:21.214 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36428 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36428 (-173.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36423 (-173.4 uncal um), Max = 36433 (-173.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:21.214 -07 000000424 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36428, posNoise = 5, negNoise = 5
17-03-18 02:39:21.214 -07 000000424 INF: Z Motor: After move to -0.174324, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:21.214 -07 000000424 INF: Z Motor: Settle wait time = 1463 ms, measure time = 109 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:39:21.214 -07 000000424 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:21.264 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 02:39:21.264 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:21.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:21.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:21.264 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:21.264 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:21.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:21.264 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:21.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:21.264 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:21.274 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:21.274 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:21.274 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:39:21.274 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:39:21.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:21.324 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:21.494 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:21.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:21.624 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:21.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:21.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:21.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:39:21.664 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:21.664 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:21.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:39:21.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:39:21.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:21.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:39:21.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:39:21.764 -07 000000629 INF: Autofocus start
17-03-18 02:39:21.764 -07 000000629 INF: MeasureProfile start
17-03-18 02:39:21.764 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:21.764 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:21.774 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:21.774 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:21.774 -07 000000629 INF: MeasureProfile done
17-03-18 02:39:21.774 -07 000000629 INF: X=-96  Z correction [um]=-0.5732754
17-03-18 02:39:21.774 -07 000000629 INF: Autofocus finished
17-03-18 02:39:21.974 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:21.974 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 02:39:21.984 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174344551911203. ----------
17-03-18 02:39:21.984 -07 000000610 INF: Cycle	102	Tile	14	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:21.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36468, sync = True, waitForSettling = True)
17-03-18 02:39:21.984 -07 000000610 INF: Z Motor: Moving to -0.166940 mm, started at -0.174345 mm, distance = 7.40 um
17-03-18 02:39:21.984 -07 000000610 INF: FPGA: Xmit ZDACW 36468\n [Z Motor]
17-03-18 02:39:21.984 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:39:21.994 -07 000000610 INF: FPGA: 'ZDACW 36468' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:21.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:21.994 -07 000000501 INF: FPGA: Recv ZDACR 36468
17-03-18 02:39:22.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:22.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.154 -07 000000462 INF: FPGA: Recv ZSGSRD 35271
17-03-18 02:39:22.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:22.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.164 -07 000000455 INF: FPGA: Recv ZSGSRD 35285
17-03-18 02:39:22.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.174 -07 000000467 INF: FPGA: Recv ZSGSRD 35277
17-03-18 02:39:22.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.184 -07 000000430 INF: FPGA: Recv ZSGSRD 35274
17-03-18 02:39:22.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.194 -07 000000444 INF: FPGA: Recv ZSGSRD 35281
17-03-18 02:39:22.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.204 -07 000000579 INF: FPGA: Recv ZSGSRD 35274
17-03-18 02:39:22.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.214 -07 000000461 INF: FPGA: Recv ZSGSRD 35279
17-03-18 02:39:22.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.224 -07 000000590 INF: FPGA: Recv ZSGSRD 35272
17-03-18 02:39:22.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.234 -07 000000576 INF: FPGA: Recv ZSGSRD 35277
17-03-18 02:39:22.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:22.244 -07 000000444 INF: FPGA: Recv ZSGSRD 35280
17-03-18 02:39:22.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:22.254 -07 000000467 INF: FPGA: Recv ZPIEZORD 31014
17-03-18 02:39:22.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:22.264 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.4 V.
17-03-18 02:39:22.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35277 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35277 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35271 (-166.0 uncal um), Max = 35285 (-166.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:39:22.264 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35277, posNoise = 8, negNoise = 6
17-03-18 02:39:22.264 -07 000000610 INF: Z Motor: After move to -0.166940, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:22.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:39:22.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:22.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:22.264 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:22.264 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:22.264 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:22.264 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:22.264 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:22.264 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:22.264 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:39:22.264 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:22.264 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:39:22.264 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:22.264 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:22.264 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:22.264 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:39:22.264 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:22.274 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:39:22.274 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:39:22.274 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:39:22.274 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:39:22.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36645 150\n [Camera]
17-03-18 02:39:22.484 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:22.874 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:39:22.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:39:22.874 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:22.884 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:22.884 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:39:22.884 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:39:22.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:39:22.884 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:22.884 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:22.884 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:39:23.074 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36645 782
17-03-18 02:39:23.224 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:23.254 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:39:23.254 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:39:23.254 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:23.254 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:39:23.254 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:39:23.254 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:23.264 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:23.264 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:39:23.264 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:23.274 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:39:23.414 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:23.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:23.414 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:23.414 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:23.414 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:39:23.414 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:23.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:23.414 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:23.414 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:23.414 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:39:23.604 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:39:23.604 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:23.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36645 150' command took 3 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-18 02:39:23.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:23.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.166950283736036. ------
17-03-18 02:39:23.734 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17366 mm
17-03-18 02:39:23.734 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:23.734 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:23.734 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:39:23.734 -07 000000590 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:39:23.734 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37936, sync = True, waitForSettling = False)
17-03-18 02:39:23.734 -07 000000569 INF: Z Motor: Moving to -0.173660 mm, started at -0.166950 mm, distance = -6.71 um
17-03-18 02:39:23.734 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:23.744 -07 000000569 INF: FPGA: Xmit ZDACW 37936\n [Z Motor]
17-03-18 02:39:23.744 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:23.744 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:39:23.754 -07 000000569 INF: FPGA: 'ZDACW 37936' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:39:23.754 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:23.754 -07 000000501 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:39:23.764 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:23.764 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:39:23.764 -07 000000590 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:23.764 -07 000000590 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:23.764 -07 000000590 INF: Y Motor: Moving 1351 steps-31
17-03-18 02:39:23.774 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:23.774 -07 000000591 INF: FPGA: Recv ZDACR 37936
17-03-18 02:39:23.784 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:23.784 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:39:23.784 -07 000000569 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:39:23.804 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:39:23.814 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:39:23.814 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:23.814 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:39:23.814 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:39:23.814 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:23.814 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:23.814 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:39:23.814 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:39:23.824 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:39:23.964 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:23.964 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:39:24.154 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:39:24.154 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:39:24.204 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:24.204 -07 000000467 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:39:24.214 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:24.214 -07 000000590 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:24.214 -07 000000590 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:39:24.214 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 02:39:24.714 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.009895,
17-03-18 02:39:25.164 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:25.164 -07 000000626 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:39:25.174 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:25.174 -07 000000590 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:25.194 -07 000000590 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:25.194 -07 000000590 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:39:25.194 -07 000000590 INF: Y Motor: Moved to 71.5181 after 1465 ms (table move)
17-03-18 02:39:25.204 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173660 mm (DAC = 37936)
17-03-18 02:39:25.204 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.204 -07 000000424 INF: FPGA: Recv ZSGSRD 36320
17-03-18 02:39:25.214 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:25.214 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.214 -07 000000502 INF: FPGA: Recv ZSGSRD 36327
17-03-18 02:39:25.224 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.224 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.224 -07 000000626 INF: FPGA: Recv ZSGSRD 36324
17-03-18 02:39:25.234 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.234 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.234 -07 000000462 INF: FPGA: Recv ZSGSRD 36328
17-03-18 02:39:25.244 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.244 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.244 -07 000000569 INF: FPGA: Recv ZSGSRD 36321
17-03-18 02:39:25.254 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.254 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.254 -07 000000618 INF: FPGA: Recv ZSGSRD 36321
17-03-18 02:39:25.264 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.264 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.264 -07 000000579 INF: FPGA: Recv ZSGSRD 36322
17-03-18 02:39:25.274 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.274 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.274 -07 000000576 INF: FPGA: Recv ZSGSRD 36325
17-03-18 02:39:25.284 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.284 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.284 -07 000000455 INF: FPGA: Recv ZSGSRD 36319
17-03-18 02:39:25.294 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.294 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:25.294 -07 000000444 INF: FPGA: Recv ZSGSRD 36325
17-03-18 02:39:25.304 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.304 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:25.304 -07 000000606 INF: FPGA: Recv ZPIEZORD 32427
17-03-18 02:39:25.314 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:25.314 -07 000000629 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.6 V.
17-03-18 02:39:25.314 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36323 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36323 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36319 (-172.8 uncal um), Max = 36328 (-172.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:39:25.314 -07 000000629 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36323, posNoise = 5, negNoise = 4
17-03-18 02:39:25.314 -07 000000629 INF: Z Motor: After move to -0.173660, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:25.314 -07 000000629 INF: Z Motor: Settle wait time = 1469 ms, measure time = 107 ms (allowed 150 ms), total time = 1576 ms
17-03-18 02:39:25.314 -07 000000629 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:25.364 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-18 02:39:25.364 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:25.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:25.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:25.364 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:25.364 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:25.364 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:25.364 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:25.364 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:25.364 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:25.374 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:25.374 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:25.384 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:39:25.384 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:39:25.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:25.434 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:25.734 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:25.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:25.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:25.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:39:25.774 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:25.774 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:25.774 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:39:25.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:39:25.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:25.854 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:39:25.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:39:25.874 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:25.874 -07 000000461 INF: Autofocus start
17-03-18 02:39:25.874 -07 000000461 INF: MeasureProfile start
17-03-18 02:39:25.874 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:25.884 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:25.884 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:25.884 -07 000000461 INF: MeasureProfile done
17-03-18 02:39:25.884 -07 000000461 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:39:25.884 -07 000000461 INF: Autofocus finished
17-03-18 02:39:26.084 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:26.084 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 02:39:26.094 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173670009636318. ----------
17-03-18 02:39:26.094 -07 000000610 INF: Cycle	102	Tile	15	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:26.094 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36451, sync = True, waitForSettling = True)
17-03-18 02:39:26.094 -07 000000610 INF: Z Motor: Moving to -0.166862 mm, started at -0.173670 mm, distance = 6.81 um
17-03-18 02:39:26.094 -07 000000610 INF: FPGA: Xmit ZDACW 36451\n [Z Motor]
17-03-18 02:39:26.094 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:39:26.104 -07 000000610 INF: FPGA: 'ZDACW 36451' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:26.104 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:26.104 -07 000000512 INF: FPGA: Recv ZDACR 36451
17-03-18 02:39:26.114 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.114 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:26.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.264 -07 000000424 INF: FPGA: Recv ZSGSRD 35268
17-03-18 02:39:26.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:26.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.274 -07 000000626 INF: FPGA: Recv ZSGSRD 35264
17-03-18 02:39:26.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.284 -07 000000502 INF: FPGA: Recv ZSGSRD 35260
17-03-18 02:39:26.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.294 -07 000000561 INF: FPGA: Recv ZSGSRD 35267
17-03-18 02:39:26.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.304 -07 000000462 INF: FPGA: Recv ZSGSRD 35262
17-03-18 02:39:26.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.314 -07 000000467 INF: FPGA: Recv ZSGSRD 35267
17-03-18 02:39:26.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.324 -07 000000606 INF: FPGA: Recv ZSGSRD 35263
17-03-18 02:39:26.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.334 -07 000000502 INF: FPGA: Recv ZSGSRD 35274
17-03-18 02:39:26.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.344 -07 000000461 INF: FPGA: Recv ZSGSRD 35266
17-03-18 02:39:26.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:26.354 -07 000000512 INF: FPGA: Recv ZSGSRD 35257
17-03-18 02:39:26.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:26.364 -07 000000424 INF: FPGA: Recv ZPIEZORD 31026
17-03-18 02:39:26.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:26.374 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.3 V.
17-03-18 02:39:26.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35265 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35265 (-166.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35257 (-166.0 uncal um), Max = 35274 (-166.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:39:26.374 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35265, posNoise = 9, negNoise = 8
17-03-18 02:39:26.374 -07 000000610 INF: Z Motor: After move to -0.166862, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:26.374 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:39:26.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:26.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:26.384 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:26.384 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:26.384 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:26.384 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:26.384 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:26.384 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:26.384 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:39:26.384 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:26.384 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:26.384 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:26.384 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:26.384 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:26.384 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:39:26.384 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:26.394 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:39:26.394 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:39:26.394 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:39:26.394 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:39:26.394 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36627 150\n [Camera]
17-03-18 02:39:26.494 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:26.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:26.594 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:26.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:26.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:26.994 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:26.994 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:26.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:26.994 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:27.004 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:27.004 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:39:27.004 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:27.004 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:39:27.184 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36627 782
17-03-18 02:39:27.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:27.374 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:39:27.374 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 02:39:27.374 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:27.374 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:39:27.374 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:39:27.374 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:27.374 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:27.374 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:39:27.384 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:27.384 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:39:27.524 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:27.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:27.534 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:27.534 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:27.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:27.534 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:27.544 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:27.544 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:39:27.544 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:27.544 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:39:27.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:39:27.724 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:27.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36627 150' command took 2 ms to send, 1311 ms to get response, and 1322 ms overall
17-03-18 02:39:27.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:27.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.166873193190335. ------
17-03-18 02:39:27.844 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:27.844 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17326 mm
17-03-18 02:39:27.844 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:27.844 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:39:27.844 -07 000000444 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 02:39:27.844 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:27.844 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37848, sync = True, waitForSettling = False)
17-03-18 02:39:27.844 -07 000000502 INF: Z Motor: Moving to -0.173257 mm, started at -0.166873 mm, distance = -6.38 um
17-03-18 02:39:27.854 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:27.854 -07 000000502 INF: FPGA: Xmit ZDACW 37848\n [Z Motor]
17-03-18 02:39:27.854 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:39:27.864 -07 000000502 INF: FPGA: 'ZDACW 37848' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:39:27.864 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:27.864 -07 000000590 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:39:27.874 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:39:27.874 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:27.874 -07 000000444 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:27.874 -07 000000444 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:27.874 -07 000000444 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:39:27.884 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:27.884 -07 000000590 INF: FPGA: Recv ZDACR 37848
17-03-18 02:39:27.894 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:27.894 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:39:27.894 -07 000000502 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:39:27.934 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:39:27.934 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:39:27.934 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:27.934 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:39:27.934 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:39:27.934 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:27.944 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:27.944 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:39:27.944 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:27.944 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:39:28.074 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:28.074 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:39:28.264 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:39:28.264 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:39:28.314 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:28.314 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:39:28.324 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:28.324 -07 000000444 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:28.324 -07 000000444 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:39:28.324 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-18 02:39:29.274 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:29.274 -07 000000467 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:39:29.284 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:29.284 -07 000000444 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:29.304 -07 000000444 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:29.304 -07 000000444 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:39:29.304 -07 000000444 INF: Y Motor: Moved to 72.3491 after 1464 ms (table move)
17-03-18 02:39:29.314 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173257 mm (DAC = 37848)
17-03-18 02:39:29.314 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.314 -07 000000462 INF: FPGA: Recv ZSGSRD 36263
17-03-18 02:39:29.324 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:29.324 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.324 -07 000000501 INF: FPGA: Recv ZSGSRD 36265
17-03-18 02:39:29.334 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.334 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.334 -07 000000606 INF: FPGA: Recv ZSGSRD 36262
17-03-18 02:39:29.344 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.344 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.344 -07 000000618 INF: FPGA: Recv ZSGSRD 36257
17-03-18 02:39:29.354 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.354 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.354 -07 000000444 INF: FPGA: Recv ZSGSRD 36263
17-03-18 02:39:29.364 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.364 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.364 -07 000000462 INF: FPGA: Recv ZSGSRD 36262
17-03-18 02:39:29.374 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.374 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.374 -07 000000629 INF: FPGA: Recv ZSGSRD 36254
17-03-18 02:39:29.384 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.384 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.384 -07 000000606 INF: FPGA: Recv ZSGSRD 36261
17-03-18 02:39:29.394 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.394 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.394 -07 000000502 INF: FPGA: Recv ZSGSRD 36263
17-03-18 02:39:29.404 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.404 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:29.404 -07 000000501 INF: FPGA: Recv ZSGSRD 36264
17-03-18 02:39:29.414 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.414 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:29.414 -07 000000512 INF: FPGA: Recv ZPIEZORD 32341
17-03-18 02:39:29.424 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:29.424 -07 000000424 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.775 V. Piezo Error = -8.7 V.
17-03-18 02:39:29.424 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36261 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36262 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36254 (-172.3 uncal um), Max = 36265 (-172.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:39:29.424 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36261, posNoise = 4, negNoise = 7
17-03-18 02:39:29.424 -07 000000424 INF: Z Motor: After move to -0.173257, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:29.424 -07 000000424 INF: Z Motor: Settle wait time = 1467 ms, measure time = 108 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:39:29.424 -07 000000424 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:29.474 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:39:29.474 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:29.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:29.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:29.474 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:29.474 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:29.474 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:29.474 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:29.474 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:29.474 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:29.484 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:39:29.484 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:29.494 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:39:29.494 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:39:29.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:29.544 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:29.844 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:29.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:29.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:29.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:39:29.884 -07 000000606 INF: FPGA: Recv @CAMSNAP 381
17-03-18 02:39:29.884 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:29.884 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 388 ms overall
17-03-18 02:39:29.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:39:29.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:29.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:39:29.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:39:29.984 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:29.984 -07 000000430 INF: Autofocus start
17-03-18 02:39:29.984 -07 000000430 INF: MeasureProfile start
17-03-18 02:39:29.984 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:29.994 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:29.994 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:29.994 -07 000000430 INF: MeasureProfile done
17-03-18 02:39:29.994 -07 000000430 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:39:29.994 -07 000000430 INF: Autofocus finished
17-03-18 02:39:30.084 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.981281,
17-03-18 02:39:30.194 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:30.194 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:30.194 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173271708483529. ----------
17-03-18 02:39:30.194 -07 000000610 INF: Cycle	102	Tile	16	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:30.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36363, sync = True, waitForSettling = True)
17-03-18 02:39:30.204 -07 000000610 INF: Z Motor: Moving to -0.166459 mm, started at -0.173272 mm, distance = 6.81 um
17-03-18 02:39:30.204 -07 000000610 INF: FPGA: Xmit ZDACW 36363\n [Z Motor]
17-03-18 02:39:30.204 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:39:30.214 -07 000000610 INF: FPGA: 'ZDACW 36363' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:30.214 -07 000000561 INF: FPGA: Recv ZDACR 36363
17-03-18 02:39:30.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:30.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.374 -07 000000424 INF: FPGA: Recv ZSGSRD 35204
17-03-18 02:39:30.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:30.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.384 -07 000000606 INF: FPGA: Recv ZSGSRD 35199
17-03-18 02:39:30.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.394 -07 000000576 INF: FPGA: Recv ZSGSRD 35199
17-03-18 02:39:30.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.404 -07 000000467 INF: FPGA: Recv ZSGSRD 35206
17-03-18 02:39:30.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.414 -07 000000561 INF: FPGA: Recv ZSGSRD 35204
17-03-18 02:39:30.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.424 -07 000000424 INF: FPGA: Recv ZSGSRD 35201
17-03-18 02:39:30.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.434 -07 000000626 INF: FPGA: Recv ZSGSRD 35207
17-03-18 02:39:30.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.444 -07 000000618 INF: FPGA: Recv ZSGSRD 35208
17-03-18 02:39:30.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.454 -07 000000430 INF: FPGA: Recv ZSGSRD 35205
17-03-18 02:39:30.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:30.464 -07 000000512 INF: FPGA: Recv ZSGSRD 35206
17-03-18 02:39:30.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.474 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:30.474 -07 000000576 INF: FPGA: Recv ZPIEZORD 30957
17-03-18 02:39:30.484 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:30.484 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.4 V.
17-03-18 02:39:30.484 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35204 (-165.6 uncal um), Error = 0.8 uncal um, Median = 35204 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35199 (-165.6 uncal um), Max = 35208 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:30.484 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35204, posNoise = 4, negNoise = 5
17-03-18 02:39:30.484 -07 000000610 INF: Z Motor: After move to -0.166459, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:30.484 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:39:30.484 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:30.484 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:30.484 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:30.484 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:30.484 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:30.484 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:30.484 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:30.484 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:30.484 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:39:30.484 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:30.484 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:39:30.484 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:30.494 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:39:30.494 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:30.494 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:39:30.494 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:30.504 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:39:30.504 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:39:30.504 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:39:30.504 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:39:30.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36540 150\n [Camera]
17-03-18 02:39:30.704 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:31.104 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:31.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:31.104 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:31.104 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:31.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:31.104 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:31.104 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:31.114 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:39:31.114 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:31.114 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:39:31.294 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36540 782
17-03-18 02:39:31.444 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:31.484 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:39:31.484 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:39:31.484 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:31.484 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:39:31.484 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:39:31.484 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:31.484 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:31.484 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:39:31.484 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:31.494 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:39:31.494 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:31.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:31.634 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:31.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:31.634 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:31.634 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:31.634 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:39:31.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:31.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:31.644 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:31.644 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:31.644 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:39:31.824 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:39:31.824 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:31.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36540 150' command took 2 ms to send, 1319 ms to get response, and 1322 ms overall
17-03-18 02:39:31.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:31.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166481316249688. ------
17-03-18 02:39:31.834 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:31.834 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17304 mm
17-03-18 02:39:31.834 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:31.834 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:31.834 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:39:31.834 -07 000000590 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:39:31.844 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:39:31.844 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:31.844 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 37800, sync = True, waitForSettling = False)
17-03-18 02:39:31.844 -07 000000629 INF: Z Motor: Moving to -0.173037 mm, started at -0.166481 mm, distance = -6.56 um
17-03-18 02:39:31.844 -07 000000444 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:39:31.854 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:31.854 -07 000000590 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:31.854 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:31.854 -07 000000590 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:31.854 -07 000000590 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:39:31.864 -07 000000629 INF: FPGA: Xmit ZDACW 37800\n [Z Motor]
17-03-18 02:39:31.864 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:39:31.874 -07 000000629 INF: FPGA: 'ZDACW 37800' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:39:31.874 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:31.884 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:31.884 -07 000000467 INF: FPGA: Recv ZDACR 37800
17-03-18 02:39:31.894 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:39:31.894 -07 000000629 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:39:32.034 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:39:32.034 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:39:32.034 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:32.034 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:39:32.034 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:39:32.034 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:32.044 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:32.044 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:39:32.044 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:39:32.054 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:39:32.054 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:32.054 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:39:32.244 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:39:32.244 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:39:32.294 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:32.294 -07 000000561 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:39:32.304 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:32.304 -07 000000590 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:32.304 -07 000000590 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 02:39:32.304 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.141 mm/sec
17-03-18 02:39:33.254 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:33.254 -07 000000430 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:39:33.264 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:33.264 -07 000000590 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:33.284 -07 000000590 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:33.284 -07 000000590 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:39:33.284 -07 000000590 INF: Y Motor: Moved to 73.1753 after 1449 ms (table move)
17-03-18 02:39:33.294 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173037 mm (DAC = 37800)
17-03-18 02:39:33.294 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.294 -07 000000512 INF: FPGA: Recv ZSGSRD 36235
17-03-18 02:39:33.304 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:33.304 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.304 -07 000000629 INF: FPGA: Recv ZSGSRD 36231
17-03-18 02:39:33.314 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.314 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.314 -07 000000430 INF: FPGA: Recv ZSGSRD 36229
17-03-18 02:39:33.324 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.324 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.324 -07 000000626 INF: FPGA: Recv ZSGSRD 36228
17-03-18 02:39:33.334 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.334 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.334 -07 000000444 INF: FPGA: Recv ZSGSRD 36226
17-03-18 02:39:33.344 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.344 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.344 -07 000000606 INF: FPGA: Recv ZSGSRD 36222
17-03-18 02:39:33.354 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.354 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.354 -07 000000502 INF: FPGA: Recv ZSGSRD 36222
17-03-18 02:39:33.364 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.364 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.364 -07 000000461 INF: FPGA: Recv ZSGSRD 36224
17-03-18 02:39:33.374 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.374 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.374 -07 000000626 INF: FPGA: Recv ZSGSRD 36227
17-03-18 02:39:33.384 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.384 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:33.384 -07 000000629 INF: FPGA: Recv ZSGSRD 36228
17-03-18 02:39:33.394 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.394 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:33.394 -07 000000430 INF: FPGA: Recv ZPIEZORD 32317
17-03-18 02:39:33.404 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:33.404 -07 000000591 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.6 V.
17-03-18 02:39:33.404 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36227 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36228 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36222 (-172.1 uncal um), Max = 36235 (-172.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:33.404 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36227, posNoise = 8, negNoise = 5
17-03-18 02:39:33.404 -07 000000591 INF: Z Motor: After move to -0.173037, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:33.404 -07 000000591 INF: Z Motor: Settle wait time = 1452 ms, measure time = 108 ms (allowed 150 ms), total time = 1560 ms
17-03-18 02:39:33.404 -07 000000591 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:33.454 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:39:33.454 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:33.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:33.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:33.454 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:33.454 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:33.454 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:33.454 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:33.454 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:33.454 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:33.464 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:33.464 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:33.474 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:39:33.474 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:39:33.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:33.524 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:33.824 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:33.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:33.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:33.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:39:33.864 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:33.864 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:33.864 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 02:39:33.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:39:33.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:33.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:39:33.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:39:33.964 -07 000000579 INF: Autofocus start
17-03-18 02:39:33.964 -07 000000579 INF: MeasureProfile start
17-03-18 02:39:33.964 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:33.964 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:33.974 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:33.974 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:33.974 -07 000000579 INF: MeasureProfile done
17-03-18 02:39:33.974 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:39:33.974 -07 000000579 INF: Autofocus finished
17-03-18 02:39:34.174 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:34.174 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:34.184 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.173053285270709. ----------
17-03-18 02:39:34.184 -07 000000610 INF: Cycle	102	Tile	17	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:34.184 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36297, sync = True, waitForSettling = True)
17-03-18 02:39:34.184 -07 000000610 INF: Z Motor: Moving to -0.166157 mm, started at -0.173053 mm, distance = 6.90 um
17-03-18 02:39:34.184 -07 000000610 INF: FPGA: Xmit ZDACW 36297\n [Z Motor]
17-03-18 02:39:34.184 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:39:34.194 -07 000000610 INF: FPGA: 'ZDACW 36297' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:34.194 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:34.194 -07 000000569 INF: FPGA: Recv ZDACR 36297
17-03-18 02:39:34.204 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.204 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:34.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.354 -07 000000424 INF: FPGA: Recv ZSGSRD 35157
17-03-18 02:39:34.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.364 -07 000000501 INF: FPGA: Recv ZSGSRD 35158
17-03-18 02:39:34.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.374 -07 000000502 INF: FPGA: Recv ZSGSRD 35154
17-03-18 02:39:34.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.384 -07 000000576 INF: FPGA: Recv ZSGSRD 35155
17-03-18 02:39:34.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.394 -07 000000569 INF: FPGA: Recv ZSGSRD 35155
17-03-18 02:39:34.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.404 -07 000000467 INF: FPGA: Recv ZSGSRD 35160
17-03-18 02:39:34.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.414 -07 000000444 INF: FPGA: Recv ZSGSRD 35154
17-03-18 02:39:34.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.424 -07 000000590 INF: FPGA: Recv ZSGSRD 35154
17-03-18 02:39:34.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.434 -07 000000461 INF: FPGA: Recv ZSGSRD 35153
17-03-18 02:39:34.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:34.444 -07 000000561 INF: FPGA: Recv ZSGSRD 35157
17-03-18 02:39:34.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:34.454 -07 000000629 INF: FPGA: Recv ZPIEZORD 30890
17-03-18 02:39:34.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:34.464 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.4 V.
17-03-18 02:39:34.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35156 (-165.3 uncal um), Error = 0.8 uncal um, Median = 35155 (-165.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35153 (-165.3 uncal um), Max = 35160 (-165.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:39:34.464 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35156, posNoise = 4, negNoise = 3
17-03-18 02:39:34.464 -07 000000610 INF: Z Motor: After move to -0.166157, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:34.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:39:34.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:34.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:34.464 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:34.464 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:34.464 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:34.464 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:34.464 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:34.464 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:34.464 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:39:34.464 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:34.464 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:34.464 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:34.474 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:39:34.474 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:34.474 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:34.474 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:34.484 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:39:34.484 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:39:34.484 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:39:34.484 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:39:34.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36474 150\n [Camera]
17-03-18 02:39:34.684 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:35.084 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:39:35.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:39:35.084 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:35.084 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:35.084 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:39:35.084 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:39:35.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:39:35.094 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:35.094 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:35.094 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:39:35.274 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36474 782
17-03-18 02:39:35.424 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:35.454 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.973092,
17-03-18 02:39:35.464 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:39:35.464 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:39:35.464 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:35.464 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:39:35.464 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:39:35.464 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:35.474 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:35.474 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:39:35.474 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:39:35.474 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:39:35.614 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:35.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:35.614 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:35.614 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:35.614 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:39:35.614 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:35.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:35.614 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:35.614 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:35.614 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:39:35.804 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:39:35.804 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:35.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36474 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:39:35.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:35.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166172954066883. ------
17-03-18 02:39:35.924 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:35.924 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17249 mm
17-03-18 02:39:35.924 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:35.924 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:35.934 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:39:35.934 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37681, sync = True, waitForSettling = False)
17-03-18 02:39:35.934 -07 000000455 INF: Z Motor: Moving to -0.172493 mm, started at -0.166173 mm, distance = -6.32 um
17-03-18 02:39:35.934 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:35.934 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:39:35.934 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 02:39:35.944 -07 000000455 INF: FPGA: Xmit ZDACW 37681\n [Z Motor]
17-03-18 02:39:35.944 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:39:35.954 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:35.954 -07 000000455 INF: FPGA: 'ZDACW 37681' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:39:35.954 -07 000000626 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:39:35.964 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:39:35.964 -07 000000561 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:35.964 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:35.964 -07 000000591 INF: FPGA: Recv ZDACR 37681
17-03-18 02:39:35.964 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:35.964 -07 000000561 INF: Y Motor: Moving 1355 steps-35
17-03-18 02:39:35.974 -07 000000455 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:39:35.974 -07 000000455 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:39:35.974 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:36.014 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:39:36.014 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:39:36.014 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:36.014 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:39:36.014 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:39:36.014 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:36.024 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:36.024 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:39:36.024 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:39:36.024 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:39:36.134 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:36.134 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:36.344 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:39:36.344 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 02:39:36.384 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:36.384 -07 000000502 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:39:36.394 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:39:36.394 -07 000000561 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:36.394 -07 000000561 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:39:36.394 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.847 mm, average velocity = 2.207 mm/sec
17-03-18 02:39:36.494 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:36.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:37.344 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:37.344 -07 000000590 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:39:37.354 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:37.354 -07 000000561 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:37.374 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:37.374 -07 000000561 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:39:37.374 -07 000000561 INF: Y Motor: Moved to 74.0078 after 1440 ms (table move)
17-03-18 02:39:37.374 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172493 mm (DAC = 37681)
17-03-18 02:39:37.374 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.374 -07 000000501 INF: FPGA: Recv ZSGSRD 36137
17-03-18 02:39:37.384 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:39:37.384 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.384 -07 000000430 INF: FPGA: Recv ZSGSRD 36138
17-03-18 02:39:37.394 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.394 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.394 -07 000000512 INF: FPGA: Recv ZSGSRD 36143
17-03-18 02:39:37.404 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.404 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.404 -07 000000569 INF: FPGA: Recv ZSGSRD 36148
17-03-18 02:39:37.414 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.414 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.414 -07 000000444 INF: FPGA: Recv ZSGSRD 36146
17-03-18 02:39:37.424 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.424 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.424 -07 000000461 INF: FPGA: Recv ZSGSRD 36144
17-03-18 02:39:37.434 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.434 -07 000000424 INF: FPGA: Recv ZSGSRD 36142
17-03-18 02:39:37.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.444 -07 000000561 INF: FPGA: Recv ZSGSRD 36140
17-03-18 02:39:37.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.454 -07 000000569 INF: FPGA: Recv ZSGSRD 36139
17-03-18 02:39:37.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:37.464 -07 000000629 INF: FPGA: Recv ZSGSRD 36142
17-03-18 02:39:37.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.474 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:37.474 -07 000000455 INF: FPGA: Recv ZPIEZORD 32208
17-03-18 02:39:37.484 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:37.484 -07 000000467 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.750 V. Piezo Error = -8.7 V.
17-03-18 02:39:37.484 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36142 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36142 (-171.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36137 (-171.6 uncal um), Max = 36148 (-171.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:37.484 -07 000000467 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36142, posNoise = 6, negNoise = 5
17-03-18 02:39:37.484 -07 000000467 INF: Z Motor: After move to -0.172493, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:37.484 -07 000000467 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-18 02:39:37.484 -07 000000467 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:37.534 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 02:39:37.534 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:37.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:37.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:37.534 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:37.534 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:37.534 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:37.534 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:37.544 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:37.544 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:37.544 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:37.544 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:37.554 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:39:37.554 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:39:37.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:37.604 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:37.904 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:37.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:37.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:37.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:39:37.944 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:37.944 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:37.944 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 387 ms overall
17-03-18 02:39:38.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:39:38.024 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:38.024 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:39:38.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:39:38.044 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:38.044 -07 000000591 INF: Autofocus start
17-03-18 02:39:38.044 -07 000000591 INF: MeasureProfile start
17-03-18 02:39:38.044 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:38.054 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:38.054 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:38.054 -07 000000591 INF: MeasureProfile done
17-03-18 02:39:38.054 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:39:38.054 -07 000000591 INF: Autofocus finished
17-03-18 02:39:38.254 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:38.254 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:38.254 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172507227238659. ----------
17-03-18 02:39:38.254 -07 000000610 INF: Cycle	102	Tile	18	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:38.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36196, sync = True, waitForSettling = True)
17-03-18 02:39:38.264 -07 000000610 INF: Z Motor: Moving to -0.165695 mm, started at -0.172507 mm, distance = 6.81 um
17-03-18 02:39:38.264 -07 000000610 INF: FPGA: Xmit ZDACW 36196\n [Z Motor]
17-03-18 02:39:38.264 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:39:38.274 -07 000000610 INF: FPGA: 'ZDACW 36196' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:38.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:38.274 -07 000000569 INF: FPGA: Recv ZDACR 36196
17-03-18 02:39:38.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:38.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.434 -07 000000629 INF: FPGA: Recv ZSGSRD 35084
17-03-18 02:39:38.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:38.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.444 -07 000000455 INF: FPGA: Recv ZSGSRD 35087
17-03-18 02:39:38.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.454 -07 000000590 INF: FPGA: Recv ZSGSRD 35090
17-03-18 02:39:38.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.464 -07 000000606 INF: FPGA: Recv ZSGSRD 35078
17-03-18 02:39:38.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.474 -07 000000502 INF: FPGA: Recv ZSGSRD 35086
17-03-18 02:39:38.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.484 -07 000000501 INF: FPGA: Recv ZSGSRD 35091
17-03-18 02:39:38.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.494 -07 000000461 INF: FPGA: Recv ZSGSRD 35080
17-03-18 02:39:38.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.504 -07 000000512 INF: FPGA: Recv ZSGSRD 35078
17-03-18 02:39:38.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.514 -07 000000576 INF: FPGA: Recv ZSGSRD 35084
17-03-18 02:39:38.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:38.524 -07 000000462 INF: FPGA: Recv ZSGSRD 35087
17-03-18 02:39:38.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:38.534 -07 000000430 INF: FPGA: Recv ZPIEZORD 30828
17-03-18 02:39:38.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:38.544 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.523 V. Piezo Error = -9.4 V.
17-03-18 02:39:38.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35084 (-164.8 uncal um), Error = 0.8 uncal um, Median = 35085 (-164.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35078 (-164.8 uncal um), Max = 35091 (-164.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:39:38.544 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35084, posNoise = 7, negNoise = 6
17-03-18 02:39:38.544 -07 000000610 INF: Z Motor: After move to -0.165695, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:38.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:39:38.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:38.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:38.544 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:38.544 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:38.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:38.544 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:38.544 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:38.544 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:38.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:38.544 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:38.544 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:39:38.544 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:38.554 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:39:38.554 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:38.554 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:39:38.554 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:38.564 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:39:38.564 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:39:38.564 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:39:38.564 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:39:38.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36373 150\n [Camera]
17-03-18 02:39:38.764 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:39.164 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:39.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:39.164 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:39.164 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:39.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:39.164 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:39.164 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:39.164 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:39:39.164 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:39.164 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:39:39.354 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36373 782
17-03-18 02:39:39.504 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:39.534 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:39:39.534 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:39:39.534 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:39.544 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:39:39.544 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:39:39.544 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:39.544 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:39.544 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:39:39.544 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:39.554 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:39:39.694 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:39.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:39.694 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:39.694 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:39.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:39.694 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:39.704 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:39.704 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:39:39.704 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:39.704 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:39:39.884 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:39:39.884 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:39.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36373 150' command took 2 ms to send, 1318 ms to get response, and 1325 ms overall
17-03-18 02:39:39.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:39:39.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165710410792676. ------
17-03-18 02:39:40.014 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17153 mm
17-03-18 02:39:40.014 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:40.014 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:40.014 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37470, sync = True, waitForSettling = False)
17-03-18 02:39:40.014 -07 000000455 INF: Z Motor: Moving to -0.171527 mm, started at -0.165710 mm, distance = -5.82 um
17-03-18 02:39:40.014 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:39:40.014 -07 000000430 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 02:39:40.014 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:40.024 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:40.024 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:40.024 -07 000000626 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:39:40.034 -07 000000455 INF: FPGA: Xmit ZDACW 37470\n [Z Motor]
17-03-18 02:39:40.034 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:39:40.034 -07 000000430 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:40.034 -07 000000430 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:40.034 -07 000000430 INF: Y Motor: Moving 1352 steps-30
17-03-18 02:39:40.034 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:39:40.044 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:40.044 -07 000000455 INF: FPGA: 'ZDACW 37470' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:39:40.054 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:40.064 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:40.064 -07 000000512 INF: FPGA: Recv ZDACR 37470
17-03-18 02:39:40.074 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:39:40.074 -07 000000455 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:39:40.094 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:39:40.094 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:39:40.094 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:40.094 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:39:40.094 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:39:40.094 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:40.104 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:40.104 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:39:40.104 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:40.114 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:39:40.244 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:40.244 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:39:40.424 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:39:40.424 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:39:40.454 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:40.454 -07 000000461 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:39:40.464 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:39:40.464 -07 000000430 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:40.464 -07 000000430 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 02:39:40.464 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 02:39:40.824 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.008536,
17-03-18 02:39:41.414 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:41.414 -07 000000455 INF: FPGA: Recv YRDPOS 153255
17-03-18 02:39:41.424 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:41.424 -07 000000430 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:41.434 -07 000000430 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:41.434 -07 000000430 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:39:41.434 -07 000000430 INF: Y Motor: Moved to 74.8315 after 1423 ms (table move)
17-03-18 02:39:41.444 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171527 mm (DAC = 37470)
17-03-18 02:39:41.444 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.444 -07 000000461 INF: FPGA: Recv ZSGSRD 35992
17-03-18 02:39:41.454 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:41.454 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.454 -07 000000462 INF: FPGA: Recv ZSGSRD 35982
17-03-18 02:39:41.464 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.464 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.464 -07 000000579 INF: FPGA: Recv ZSGSRD 35989
17-03-18 02:39:41.474 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.474 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.474 -07 000000512 INF: FPGA: Recv ZSGSRD 35987
17-03-18 02:39:41.484 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.484 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.484 -07 000000502 INF: FPGA: Recv ZSGSRD 35983
17-03-18 02:39:41.494 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.494 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.494 -07 000000461 INF: FPGA: Recv ZSGSRD 35993
17-03-18 02:39:41.504 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.504 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:41.504 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:41.504 -07 000000467 INF: FPGA: Recv ZSGSRD 36002
17-03-18 02:39:41.514 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.514 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.514 -07 000000461 INF: FPGA: Recv ZSGSRD 36003
17-03-18 02:39:41.524 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.524 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.524 -07 000000576 INF: FPGA: Recv ZSGSRD 35990
17-03-18 02:39:41.534 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.534 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:41.534 -07 000000618 INF: FPGA: Recv ZSGSRD 35987
17-03-18 02:39:41.544 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.544 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:41.544 -07 000000606 INF: FPGA: Recv ZPIEZORD 32003
17-03-18 02:39:41.554 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:41.554 -07 000000501 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.8 V.
17-03-18 02:39:41.554 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35991 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35990 (-170.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 35982 (-170.6 uncal um), Max = 36003 (-170.7 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:39:41.554 -07 000000501 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35991, posNoise = 12, negNoise = 9
17-03-18 02:39:41.554 -07 000000501 INF: Z Motor: After move to -0.171527, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:41.554 -07 000000501 INF: Z Motor: Settle wait time = 1428 ms, measure time = 107 ms (allowed 150 ms), total time = 1535 ms
17-03-18 02:39:41.554 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:41.604 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-18 02:39:41.604 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:41.604 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:41.604 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:41.604 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:41.604 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:41.604 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:41.604 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:41.604 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:41.604 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:41.614 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:41.614 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:41.624 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:39:41.624 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:39:41.624 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:41.674 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:41.974 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:41.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:41.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:41.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:39:42.014 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:42.014 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:42.014 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:39:42.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:39:42.084 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:42.084 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:39:42.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:39:42.114 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:42.114 -07 000000618 INF: Autofocus start
17-03-18 02:39:42.114 -07 000000618 INF: MeasureProfile start
17-03-18 02:39:42.114 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:42.124 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:42.124 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:42.124 -07 000000618 INF: MeasureProfile done
17-03-18 02:39:42.124 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:39:42.124 -07 000000618 INF: Autofocus finished
17-03-18 02:39:42.324 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:42.324 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:42.324 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.171537171205254. ----------
17-03-18 02:39:42.324 -07 000000610 INF: Cycle	102	Tile	19	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:42.334 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35985, sync = True, waitForSettling = True)
17-03-18 02:39:42.334 -07 000000610 INF: Z Motor: Moving to -0.164729 mm, started at -0.171537 mm, distance = 6.81 um
17-03-18 02:39:42.334 -07 000000610 INF: FPGA: Xmit ZDACW 35985\n [Z Motor]
17-03-18 02:39:42.334 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:39:42.344 -07 000000610 INF: FPGA: 'ZDACW 35985' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:42.344 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:42.344 -07 000000590 INF: FPGA: Recv ZDACR 35985
17-03-18 02:39:42.354 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.354 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:42.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.504 -07 000000455 INF: FPGA: Recv ZSGSRD 34926
17-03-18 02:39:42.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:42.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.514 -07 000000502 INF: FPGA: Recv ZSGSRD 34930
17-03-18 02:39:42.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.524 -07 000000430 INF: FPGA: Recv ZSGSRD 34934
17-03-18 02:39:42.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.534 -07 000000569 INF: FPGA: Recv ZSGSRD 34938
17-03-18 02:39:42.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.544 -07 000000576 INF: FPGA: Recv ZSGSRD 34930
17-03-18 02:39:42.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.554 -07 000000579 INF: FPGA: Recv ZSGSRD 34934
17-03-18 02:39:42.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.564 -07 000000444 INF: FPGA: Recv ZSGSRD 34934
17-03-18 02:39:42.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.574 -07 000000590 INF: FPGA: Recv ZSGSRD 34935
17-03-18 02:39:42.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.584 -07 000000569 INF: FPGA: Recv ZSGSRD 34930
17-03-18 02:39:42.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:42.594 -07 000000576 INF: FPGA: Recv ZSGSRD 34934
17-03-18 02:39:42.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:42.604 -07 000000579 INF: FPGA: Recv ZPIEZORD 30615
17-03-18 02:39:42.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:42.614 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.491 V. Piezo Error = -9.5 V.
17-03-18 02:39:42.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34932 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34934 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34926 (-163.8 uncal um), Max = 34938 (-163.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:39:42.614 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34932, posNoise = 6, negNoise = 6
17-03-18 02:39:42.614 -07 000000610 INF: Z Motor: After move to -0.164729, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:42.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:39:42.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:42.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:42.614 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:42.614 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:42.614 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:42.614 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:42.614 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:42.614 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:42.614 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:42.614 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:42.614 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:39:42.614 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:42.624 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:42.624 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:42.624 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:39:42.624 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:42.624 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:39:42.624 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:39:42.634 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:39:42.634 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:39:42.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 36162 150\n [Camera]
17-03-18 02:39:42.834 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:43.234 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:43.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:43.234 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:43.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:43.234 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:43.234 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:43.244 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:43.244 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:43.244 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:39:43.244 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:39:43.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36162 782
17-03-18 02:39:43.574 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:43.614 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:39:43.614 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:39:43.614 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:43.614 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:39:43.614 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:39:43.614 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:43.614 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:43.614 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:43.614 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:39:43.624 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:39:43.764 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:43.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:43.764 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:43.764 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:43.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:43.764 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:43.764 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:39:43.764 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:43.764 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:43.764 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:39:43.954 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:39:43.954 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:43.954 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 36162 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-18 02:39:44.174 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 02:39:44.174 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:39:44.174 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:44.174 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 02:39:44.174 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:39:44.174 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:44.174 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:44.184 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:44.184 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 02:39:44.184 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:39:44.184 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:39:44.224 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:39:44.224 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:39:44.264 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-18 02:39:44.264 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:39:44.264 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:39:44.274 -07 000000430 INF: FPGA: Recv EMCUR 
17-03-18 02:39:44.284 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:44.284 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:39:44.784 -07 000000629 INF: FPGA: Recv EMIN
17-03-18 02:39:44.784 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 503 ms overall
17-03-18 02:39:44.784 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:39:44.794 -07 000000579 INF: FPGA: Recv EMCUR 
17-03-18 02:39:44.794 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:39:44.794 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:39:44.794 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.164733930547129. ------
17-03-18 02:39:44.794 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:44.794 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13947 mm
17-03-18 02:39:44.794 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:44.794 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:39:44.794 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-18 02:39:44.804 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:44.804 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:44.804 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:44.804 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30467, sync = True, waitForSettling = False)
17-03-18 02:39:44.804 -07 000000461 INF: Z Motor: Moving to -0.139469 mm, started at -0.164734 mm, distance = 25.26 um
17-03-18 02:39:44.804 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:39:44.814 -07 000000461 INF: FPGA: Xmit ZDACW 30467\n [Z Motor]
17-03-18 02:39:44.814 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:44.814 -07 000000512 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:44.814 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:39:44.814 -07 000000512 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:39:44.814 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:39:44.824 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:44.824 -07 000000461 INF: FPGA: 'ZDACW 30467' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:39:44.834 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:39:44.844 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:44.844 -07 000000618 INF: FPGA: Recv ZDACR 30467
17-03-18 02:39:44.854 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:39:44.854 -07 000000461 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:39:45.024 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:45.024 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 02:39:46.194 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.012614,
17-03-18 02:39:46.454 -07 000000444 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:39:46.454 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1642 ms overall
17-03-18 02:39:46.454 -07 000000512 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:39:46.454 -07 000000512 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:39:46.454 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1642 ms, distance = 14.919 mm, average velocity = 9.086 mm/sec
17-03-18 02:39:46.504 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:46.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:49.304 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:49.304 -07 000000629 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:39:49.314 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:49.314 -07 000000512 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:49.344 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:49.344 -07 000000512 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 02:39:49.344 -07 000000512 INF: Y Motor: Moved to 59.9111 after 4546 ms
17-03-18 02:39:49.354 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139469 mm (DAC = 30467)
17-03-18 02:39:49.354 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.354 -07 000000561 INF: FPGA: Recv ZSGSRD 31003
17-03-18 02:39:49.364 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.364 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.364 -07 000000590 INF: FPGA: Recv ZSGSRD 30996
17-03-18 02:39:49.374 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.374 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.374 -07 000000579 INF: FPGA: Recv ZSGSRD 31003
17-03-18 02:39:49.384 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.384 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.384 -07 000000501 INF: FPGA: Recv ZSGSRD 30997
17-03-18 02:39:49.394 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.394 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.394 -07 000000512 INF: FPGA: Recv ZSGSRD 31001
17-03-18 02:39:49.404 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.404 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.404 -07 000000626 INF: FPGA: Recv ZSGSRD 31003
17-03-18 02:39:49.414 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.414 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.414 -07 000000462 INF: FPGA: Recv ZSGSRD 30998
17-03-18 02:39:49.424 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.424 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.424 -07 000000579 INF: FPGA: Recv ZSGSRD 31000
17-03-18 02:39:49.434 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.434 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.434 -07 000000576 INF: FPGA: Recv ZSGSRD 30999
17-03-18 02:39:49.444 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.444 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:49.444 -07 000000629 INF: FPGA: Recv ZSGSRD 31006
17-03-18 02:39:49.454 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.454 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:49.454 -07 000000455 INF: FPGA: Recv ZPIEZORD 26496
17-03-18 02:39:49.464 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:49.464 -07 000000430 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.649 V. Piezo Error = -9.9 V.
17-03-18 02:39:49.464 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31001 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31000 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30996 (-138.6 uncal um), Max = 31006 (-138.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:49.464 -07 000000430 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31001, posNoise = 5, negNoise = 5
17-03-18 02:39:49.464 -07 000000430 INF: Z Motor: After move to -0.139469, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:49.464 -07 000000430 INF: Z Motor: Settle wait time = 4547 ms, measure time = 110 ms (allowed 150 ms), total time = 4657 ms
17-03-18 02:39:49.464 -07 000000430 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:49.504 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-18 02:39:49.504 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:49.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:49.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:49.504 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:49.504 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:49.504 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:49.504 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:49.504 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:49.504 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:39:49.534 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 02:39:49.534 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:49.534 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:39:49.534 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:49.554 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:39:49.554 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 02:39:49.554 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:49.594 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:49.894 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:49.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:49.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:49.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:39:49.934 -07 000000576 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:49.934 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:49.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:39:50.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:39:50.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:50.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:39:50.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:39:50.034 -07 000000501 INF: Image SNR check: start
17-03-18 02:39:50.034 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:50.034 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:50.044 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:39:50.044 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:50.044 -07 000000501 INF: Image SNR check: pass  [peak (Max-Min)=134.54]
17-03-18 02:39:50.044 -07 000000501 INF: Autofocus start
17-03-18 02:39:50.044 -07 000000501 INF: MeasureProfile start
17-03-18 02:39:50.064 -07 000000501 INF: MeasureProfile done
17-03-18 02:39:50.064 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:39:50.064 -07 000000501 INF: Autofocus finished
17-03-18 02:39:50.244 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:50.244 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:50.244 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139480352617866. ----------
17-03-18 02:39:50.244 -07 000000610 INF: Cycle	102	Tile	1	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:50.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28975, sync = True, waitForSettling = True)
17-03-18 02:39:50.254 -07 000000610 INF: Z Motor: Moving to -0.132639 mm, started at -0.139480 mm, distance = 6.84 um
17-03-18 02:39:50.254 -07 000000610 INF: FPGA: Xmit ZDACW 28975\n [Z Motor]
17-03-18 02:39:50.254 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:39:50.264 -07 000000610 INF: FPGA: 'ZDACW 28975' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:50.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:50.264 -07 000000590 INF: FPGA: Recv ZDACR 28975
17-03-18 02:39:50.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:50.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29939
17-03-18 02:39:50.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:50.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.434 -07 000000462 INF: FPGA: Recv ZSGSRD 29939
17-03-18 02:39:50.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29937
17-03-18 02:39:50.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.454 -07 000000576 INF: FPGA: Recv ZSGSRD 29931
17-03-18 02:39:50.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.464 -07 000000561 INF: FPGA: Recv ZSGSRD 29934
17-03-18 02:39:50.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.474 -07 000000455 INF: FPGA: Recv ZSGSRD 29939
17-03-18 02:39:50.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.484 -07 000000462 INF: FPGA: Recv ZSGSRD 29940
17-03-18 02:39:50.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.494 -07 000000618 INF: FPGA: Recv ZSGSRD 29940
17-03-18 02:39:50.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.504 -07 000000461 INF: FPGA: Recv ZSGSRD 29932
17-03-18 02:39:50.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:50.514 -07 000000590 INF: FPGA: Recv ZSGSRD 29933
17-03-18 02:39:50.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:50.524 -07 000000467 INF: FPGA: Recv ZPIEZORD 25368
17-03-18 02:39:50.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:50.534 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -10.0 V.
17-03-18 02:39:50.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29936 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29938 (-131.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29931 (-131.8 uncal um), Max = 29940 (-131.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:50.534 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29936, posNoise = 4, negNoise = 5
17-03-18 02:39:50.534 -07 000000610 INF: Z Motor: After move to -0.132639, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:50.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:39:50.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:50.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:50.534 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:50.534 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:50.534 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:50.534 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:50.534 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:50.534 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:50.534 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:39:50.534 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:39:50.534 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:50.534 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:50.544 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:50.544 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:50.554 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:39:50.554 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:39:50.554 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 02:39:50.554 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:50.564 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:39:50.564 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:50.564 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:39:50.564 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-18 02:39:50.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29151 150\n [Camera]
17-03-18 02:39:50.774 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:51.164 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:51.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:51.174 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:51.174 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:51.174 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:39:51.174 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:51.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:51.174 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:51.174 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:51.174 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:39:51.364 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29151 782
17-03-18 02:39:51.504 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:51.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:51.514 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:51.544 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:39:51.544 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:39:51.544 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:51.544 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:39:51.544 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:39:51.544 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:51.554 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:39:51.554 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:39:51.554 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:39:51.564 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.015368,
17-03-18 02:39:51.564 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:39:51.704 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:51.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:51.704 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:51.704 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:51.704 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:39:51.704 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:51.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:51.704 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:51.704 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:51.704 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:39:51.894 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:39:51.894 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:51.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29151 150' command took 4 ms to send, 1315 ms to get response, and 1323 ms overall
17-03-18 02:39:52.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:39:52.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132638566686891. ------
17-03-18 02:39:52.034 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:52.034 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13906 mm
17-03-18 02:39:52.034 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:52.034 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:52.034 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30378, sync = True, waitForSettling = False)
17-03-18 02:39:52.034 -07 000000502 INF: Z Motor: Moving to -0.139062 mm, started at -0.132639 mm, distance = -6.42 um
17-03-18 02:39:52.034 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:39:52.034 -07 000000512 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 02:39:52.044 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:52.044 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:52.044 -07 000000462 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:39:52.054 -07 000000502 INF: FPGA: Xmit ZDACW 30378\n [Z Motor]
17-03-18 02:39:52.054 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:39:52.054 -07 000000512 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:52.054 -07 000000512 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:52.054 -07 000000512 INF: Y Motor: Moving 1330 steps2
17-03-18 02:39:52.054 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:39:52.064 -07 000000502 INF: FPGA: 'ZDACW 30378' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:39:52.064 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:52.074 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:52.084 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:52.084 -07 000000424 INF: FPGA: Recv ZDACR 30378
17-03-18 02:39:52.094 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:39:52.094 -07 000000502 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:39:52.104 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:39:52.104 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:39:52.104 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:52.104 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:39:52.104 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:39:52.104 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:52.104 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:52.114 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:39:52.114 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:39:52.114 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-18 02:39:52.264 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:52.264 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:39:52.444 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:39:52.444 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:39:52.484 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:52.484 -07 000000467 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:39:52.494 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:39:52.494 -07 000000512 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:52.494 -07 000000512 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:39:52.494 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-18 02:39:53.444 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:53.444 -07 000000501 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:39:53.454 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:53.454 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:53.474 -07 000000512 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:53.474 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:39:53.474 -07 000000512 INF: Y Motor: Moved to 60.7334 after 1442 ms (table move)
17-03-18 02:39:53.484 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139062 mm (DAC = 30378)
17-03-18 02:39:53.484 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.484 -07 000000561 INF: FPGA: Recv ZSGSRD 30944
17-03-18 02:39:53.494 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:53.494 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.494 -07 000000579 INF: FPGA: Recv ZSGSRD 30936
17-03-18 02:39:53.504 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.504 -07 000000444 INF: FPGA: Recv ZSGSRD 30941
17-03-18 02:39:53.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.514 -07 000000618 INF: FPGA: Recv ZSGSRD 30941
17-03-18 02:39:53.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.524 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.524 -07 000000430 INF: FPGA: Recv ZSGSRD 30944
17-03-18 02:39:53.534 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.534 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.534 -07 000000561 INF: FPGA: Recv ZSGSRD 30932
17-03-18 02:39:53.544 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.544 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.544 -07 000000462 INF: FPGA: Recv ZSGSRD 30933
17-03-18 02:39:53.554 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.554 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.554 -07 000000606 INF: FPGA: Recv ZSGSRD 30938
17-03-18 02:39:53.564 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.564 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.564 -07 000000424 INF: FPGA: Recv ZSGSRD 30932
17-03-18 02:39:53.574 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.574 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:53.574 -07 000000455 INF: FPGA: Recv ZSGSRD 30936
17-03-18 02:39:53.584 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.584 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:53.584 -07 000000561 INF: FPGA: Recv ZPIEZORD 26681
17-03-18 02:39:53.594 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:53.594 -07 000000591 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.635 V. Piezo Error = -9.4 V.
17-03-18 02:39:53.594 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30938 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30937 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30932 (-138.2 uncal um), Max = 30944 (-138.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:39:53.594 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30938, posNoise = 6, negNoise = 6
17-03-18 02:39:53.594 -07 000000591 INF: Z Motor: After move to -0.139062, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:53.594 -07 000000591 INF: Z Motor: Settle wait time = 1446 ms, measure time = 110 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:39:53.594 -07 000000591 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:53.634 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 02:39:53.634 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:53.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:53.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:53.634 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:53.634 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:53.634 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:53.634 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:53.634 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:53.634 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:53.644 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:39:53.644 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:53.654 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:39:53.654 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:39:53.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:53.704 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:54.004 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:54.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:54.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:54.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:39:54.044 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:54.044 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:54.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 385 ms overall
17-03-18 02:39:54.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 02:39:54.134 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:54.134 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:39:54.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:39:54.144 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:54.144 -07 000000590 INF: Autofocus start
17-03-18 02:39:54.144 -07 000000590 INF: MeasureProfile start
17-03-18 02:39:54.144 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:54.154 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:54.154 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:54.154 -07 000000590 INF: MeasureProfile done
17-03-18 02:39:54.154 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:39:54.154 -07 000000590 INF: Autofocus finished
17-03-18 02:39:54.354 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:54.354 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:54.354 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139075627252935. ----------
17-03-18 02:39:54.354 -07 000000610 INF: Cycle	102	Tile	2	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:54.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28885, sync = True, waitForSettling = True)
17-03-18 02:39:54.364 -07 000000610 INF: Z Motor: Moving to -0.132227 mm, started at -0.139076 mm, distance = 6.85 um
17-03-18 02:39:54.364 -07 000000610 INF: FPGA: Xmit ZDACW 28885\n [Z Motor]
17-03-18 02:39:54.364 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:39:54.374 -07 000000610 INF: FPGA: 'ZDACW 28885' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:54.374 -07 000000502 INF: FPGA: Recv ZDACR 28885
17-03-18 02:39:54.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:54.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.534 -07 000000576 INF: FPGA: Recv ZSGSRD 29875
17-03-18 02:39:54.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:54.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.544 -07 000000444 INF: FPGA: Recv ZSGSRD 29875
17-03-18 02:39:54.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.554 -07 000000618 INF: FPGA: Recv ZSGSRD 29865
17-03-18 02:39:54.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.564 -07 000000461 INF: FPGA: Recv ZSGSRD 29873
17-03-18 02:39:54.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.574 -07 000000467 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:39:54.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.584 -07 000000606 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:39:54.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.594 -07 000000591 INF: FPGA: Recv ZSGSRD 29871
17-03-18 02:39:54.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.604 -07 000000502 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:39:54.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.614 -07 000000424 INF: FPGA: Recv ZSGSRD 29876
17-03-18 02:39:54.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:54.624 -07 000000462 INF: FPGA: Recv ZSGSRD 29871
17-03-18 02:39:54.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:54.634 -07 000000606 INF: FPGA: Recv ZPIEZORD 25338
17-03-18 02:39:54.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:54.644 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.9 V.
17-03-18 02:39:54.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29873 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29874 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29865 (-131.4 uncal um), Max = 29876 (-131.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:39:54.644 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29873, posNoise = 3, negNoise = 8
17-03-18 02:39:54.644 -07 000000610 INF: Z Motor: After move to -0.132227, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:54.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:39:54.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:54.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:54.644 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:54.644 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:54.644 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:54.644 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:54.644 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:54.644 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:54.644 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:54.644 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:54.644 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:39:54.644 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:54.654 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:39:54.654 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:54.654 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:39:54.654 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:54.664 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:39:54.664 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:39:54.664 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:39:54.664 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:39:54.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29062 150\n [Camera]
17-03-18 02:39:54.864 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:55.264 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:55.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:55.264 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:55.264 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:55.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:55.264 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:55.274 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:55.274 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:39:55.274 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:55.274 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:39:55.454 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29062 782
17-03-18 02:39:55.604 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:55.664 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:39:55.664 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:39:55.664 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:55.674 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:39:55.674 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:39:55.674 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:55.674 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:55.674 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:39:55.674 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:55.684 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:39:55.794 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:55.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:55.804 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:55.804 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:55.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:55.804 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:55.814 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:55.814 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:39:55.814 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:55.814 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:39:55.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:39:55.994 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:55.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29062 150' command took 2 ms to send, 1315 ms to get response, and 1326 ms overall
17-03-18 02:39:55.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:39:55.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.13223384132196. ------
17-03-18 02:39:56.004 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:56.004 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13897 mm
17-03-18 02:39:56.004 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:39:56.004 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:56.004 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30358, sync = True, waitForSettling = False)
17-03-18 02:39:56.004 -07 000000629 INF: Z Motor: Moving to -0.138970 mm, started at -0.132234 mm, distance = -6.74 um
17-03-18 02:39:56.004 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:39:56.004 -07 000000512 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-18 02:39:56.014 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:56.014 -07 000000629 INF: FPGA: Xmit ZDACW 30358\n [Z Motor]
17-03-18 02:39:56.014 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:39:56.024 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:56.024 -07 000000629 INF: FPGA: 'ZDACW 30358' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:39:56.024 -07 000000502 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:39:56.034 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:39:56.034 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:39:56.034 -07 000000512 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:56.034 -07 000000512 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:39:56.034 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:39:56.044 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:56.044 -07 000000626 INF: FPGA: Recv ZDACR 30358
17-03-18 02:39:56.054 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:39:56.054 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:39:56.054 -07 000000629 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:39:56.194 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:39:56.194 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:39:56.194 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:56.194 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:39:56.194 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:39:56.194 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:56.194 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:56.204 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:39:56.204 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:39:56.204 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:39:56.234 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:39:56.234 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:39:56.424 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:39:56.424 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-18 02:39:56.474 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:56.474 -07 000000629 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:39:56.484 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:56.484 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:56.484 -07 000000512 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:39:56.484 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 02:39:56.504 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:39:56.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:39:56.934 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.014009,
17-03-18 02:39:57.434 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:39:57.434 -07 000000424 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:39:57.444 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:57.444 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:39:57.464 -07 000000512 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:39:57.464 -07 000000512 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:39:57.464 -07 000000512 INF: Y Motor: Moved to 61.5640 after 1463 ms (table move)
17-03-18 02:39:57.474 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138970 mm (DAC = 30358)
17-03-18 02:39:57.474 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.474 -07 000000591 INF: FPGA: Recv ZSGSRD 30924
17-03-18 02:39:57.484 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:39:57.484 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.484 -07 000000467 INF: FPGA: Recv ZSGSRD 30919
17-03-18 02:39:57.494 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.494 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.494 -07 000000444 INF: FPGA: Recv ZSGSRD 30916
17-03-18 02:39:57.504 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.504 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.504 -07 000000462 INF: FPGA: Recv ZSGSRD 30931
17-03-18 02:39:57.514 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.514 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.514 -07 000000502 INF: FPGA: Recv ZSGSRD 30925
17-03-18 02:39:57.524 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.524 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.524 -07 000000461 INF: FPGA: Recv ZSGSRD 30926
17-03-18 02:39:57.534 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.534 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.534 -07 000000626 INF: FPGA: Recv ZSGSRD 30917
17-03-18 02:39:57.544 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.544 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.544 -07 000000444 INF: FPGA: Recv ZSGSRD 30918
17-03-18 02:39:57.554 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.554 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.554 -07 000000576 INF: FPGA: Recv ZSGSRD 30919
17-03-18 02:39:57.564 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.564 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:57.564 -07 000000501 INF: FPGA: Recv ZSGSRD 30920
17-03-18 02:39:57.574 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.574 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:57.574 -07 000000461 INF: FPGA: Recv ZPIEZORD 26751
17-03-18 02:39:57.584 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:57.584 -07 000000590 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.2 V.
17-03-18 02:39:57.584 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30922 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30920 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30916 (-138.1 uncal um), Max = 30931 (-138.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:39:57.584 -07 000000590 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30922, posNoise = 9, negNoise = 6
17-03-18 02:39:57.584 -07 000000590 INF: Z Motor: After move to -0.138970, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:57.584 -07 000000590 INF: Z Motor: Settle wait time = 1466 ms, measure time = 109 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:39:57.584 -07 000000590 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:39:57.634 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:39:57.634 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:39:57.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:57.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:57.634 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:57.634 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:57.634 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:39:57.634 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:57.634 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:57.634 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:39:57.634 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:57.634 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:39:57.654 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:39:57.654 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:39:57.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:39:57.704 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:39:58.004 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:39:58.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:39:58.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:39:58.004 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:39:58.034 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:39:58.044 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:39:58.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:39:58.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:39:58.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:58.124 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:39:58.124 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:39:58.144 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:58.144 -07 000000629 INF: Autofocus start
17-03-18 02:39:58.144 -07 000000629 INF: MeasureProfile start
17-03-18 02:39:58.144 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:39:58.154 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:39:58.154 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:39:58.164 -07 000000629 INF: MeasureProfile done
17-03-18 02:39:58.164 -07 000000629 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:39:58.164 -07 000000629 INF: Autofocus finished
17-03-18 02:39:58.354 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:39:58.354 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:39:58.354 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138972839858667. ----------
17-03-18 02:39:58.354 -07 000000610 INF: Cycle	102	Tile	3	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:39:58.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28865, sync = True, waitForSettling = True)
17-03-18 02:39:58.364 -07 000000610 INF: Z Motor: Moving to -0.132136 mm, started at -0.138973 mm, distance = 6.84 um
17-03-18 02:39:58.364 -07 000000610 INF: FPGA: Xmit ZDACW 28865\n [Z Motor]
17-03-18 02:39:58.364 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:39:58.374 -07 000000610 INF: FPGA: 'ZDACW 28865' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:39:58.374 -07 000000455 INF: FPGA: Recv ZDACR 28865
17-03-18 02:39:58.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:39:58.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.534 -07 000000430 INF: FPGA: Recv ZSGSRD 29864
17-03-18 02:39:58.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:39:58.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.544 -07 000000618 INF: FPGA: Recv ZSGSRD 29862
17-03-18 02:39:58.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:39:58.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.554 -07 000000590 INF: FPGA: Recv ZSGSRD 29856
17-03-18 02:39:58.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.564 -07 000000591 INF: FPGA: Recv ZSGSRD 29856
17-03-18 02:39:58.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.574 -07 000000501 INF: FPGA: Recv ZSGSRD 29857
17-03-18 02:39:58.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.584 -07 000000455 INF: FPGA: Recv ZSGSRD 29858
17-03-18 02:39:58.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.594 -07 000000501 INF: FPGA: Recv ZSGSRD 29854
17-03-18 02:39:58.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.604 -07 000000455 INF: FPGA: Recv ZSGSRD 29865
17-03-18 02:39:58.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.614 -07 000000629 INF: FPGA: Recv ZSGSRD 29858
17-03-18 02:39:58.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:39:58.624 -07 000000512 INF: FPGA: Recv ZSGSRD 29857
17-03-18 02:39:58.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:39:58.634 -07 000000626 INF: FPGA: Recv ZPIEZORD 25349
17-03-18 02:39:58.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:39:58.644 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.405 V. Piezo Error = -9.9 V.
17-03-18 02:39:58.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29859 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29854 (-131.3 uncal um), Max = 29865 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:39:58.644 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29859, posNoise = 6, negNoise = 5
17-03-18 02:39:58.644 -07 000000610 INF: Z Motor: After move to -0.132136, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:39:58.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:39:58.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:39:58.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:39:58.644 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:39:58.644 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:39:58.644 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:39:58.644 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:39:58.644 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:39:58.644 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:39:58.644 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:39:58.644 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:39:58.644 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:39:58.644 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:39:58.654 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:39:58.654 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:39:58.654 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:39:58.654 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:39:58.654 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:39:58.664 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:39:58.664 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:39:58.664 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:39:58.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 29042 150\n [Camera]
17-03-18 02:39:58.864 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:39:59.264 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:39:59.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:39:59.264 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:59.264 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:39:59.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:39:59.264 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:59.264 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:59.264 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:39:59.274 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:59.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:39:59.454 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29042 782
17-03-18 02:39:59.604 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:39:59.644 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:39:59.644 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:39:59.644 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:59.644 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:39:59.644 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:39:59.644 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:39:59.644 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:59.644 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:39:59.644 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:39:59.654 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:39:59.794 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:39:59.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:39:59.794 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:39:59.794 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:39:59.794 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:39:59.804 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:39:59.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:39:59.804 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:39:59.804 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:39:59.804 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:39:59.984 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:39:59.984 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:39:59.994 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 29042 150' command took 2 ms to send, 1319 ms to get response, and 1323 ms overall
17-03-18 02:39:59.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:39:59.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132143902351975. ------
17-03-18 02:39:59.994 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:39:59.994 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13856 mm
17-03-18 02:39:59.994 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:00.004 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:40:00.004 -07 000000591 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:40:00.004 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:00.004 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:40:00.004 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:00.004 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30269, sync = True, waitForSettling = False)
17-03-18 02:40:00.004 -07 000000629 INF: Z Motor: Moving to -0.138563 mm, started at -0.132144 mm, distance = -6.42 um
17-03-18 02:40:00.004 -07 000000512 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:40:00.014 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:00.014 -07 000000591 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:00.014 -07 000000591 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:00.014 -07 000000591 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:40:00.014 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:00.024 -07 000000629 INF: FPGA: Xmit ZDACW 30269\n [Z Motor]
17-03-18 02:40:00.024 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:40:00.034 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:00.034 -07 000000629 INF: FPGA: 'ZDACW 30269' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:40:00.044 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:00.044 -07 000000561 INF: FPGA: Recv ZDACR 30269
17-03-18 02:40:00.054 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:40:00.054 -07 000000629 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:40:00.184 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:40:00.184 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:40:00.184 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:00.184 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:40:00.184 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:40:00.184 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:00.194 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:00.194 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:40:00.194 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:40:00.194 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:40:00.214 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:00.214 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:40:00.404 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:40:00.404 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:40:00.454 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:00.454 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:40:00.464 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:00.464 -07 000000591 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:00.464 -07 000000591 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:40:00.464 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-18 02:40:01.414 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:01.414 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:40:01.424 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:01.424 -07 000000591 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:01.444 -07 000000591 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:01.444 -07 000000591 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:40:01.444 -07 000000591 INF: Y Motor: Moved to 62.3955 after 1447 ms (table move)
17-03-18 02:40:01.454 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138563 mm (DAC = 30269)
17-03-18 02:40:01.454 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.454 -07 000000455 INF: FPGA: Recv ZSGSRD 30860
17-03-18 02:40:01.464 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:01.464 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.464 -07 000000569 INF: FPGA: Recv ZSGSRD 30859
17-03-18 02:40:01.474 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.474 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.474 -07 000000561 INF: FPGA: Recv ZSGSRD 30864
17-03-18 02:40:01.484 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.484 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.484 -07 000000576 INF: FPGA: Recv ZSGSRD 30863
17-03-18 02:40:01.494 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.494 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.494 -07 000000591 INF: FPGA: Recv ZSGSRD 30859
17-03-18 02:40:01.504 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.504 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.504 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:01.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:01.504 -07 000000502 INF: FPGA: Recv ZSGSRD 30856
17-03-18 02:40:01.514 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.514 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.514 -07 000000467 INF: FPGA: Recv ZSGSRD 30854
17-03-18 02:40:01.524 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.524 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.524 -07 000000579 INF: FPGA: Recv ZSGSRD 30860
17-03-18 02:40:01.534 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.534 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.534 -07 000000502 INF: FPGA: Recv ZSGSRD 30864
17-03-18 02:40:01.544 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.544 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:01.544 -07 000000430 INF: FPGA: Recv ZSGSRD 30862
17-03-18 02:40:01.554 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.554 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:01.554 -07 000000579 INF: FPGA: Recv ZPIEZORD 26694
17-03-18 02:40:01.564 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:01.564 -07 000000618 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.2 V.
17-03-18 02:40:01.564 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30860 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30860 (-137.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30854 (-137.7 uncal um), Max = 30864 (-137.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:01.564 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30860, posNoise = 4, negNoise = 6
17-03-18 02:40:01.564 -07 000000618 INF: Z Motor: After move to -0.138563, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:01.564 -07 000000618 INF: Z Motor: Settle wait time = 1450 ms, measure time = 108 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:40:01.564 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:01.614 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:40:01.614 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:01.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:01.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:01.614 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:01.614 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:01.614 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:01.614 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:01.624 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:01.624 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:01.624 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:01.624 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:01.634 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:40:01.634 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:40:01.634 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:01.684 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:01.984 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:01.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:01.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:01.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:40:02.024 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:02.024 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:02.024 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 386 ms overall
17-03-18 02:40:02.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:40:02.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:02.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:40:02.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:40:02.124 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:02.124 -07 000000579 INF: Autofocus start
17-03-18 02:40:02.124 -07 000000579 INF: MeasureProfile start
17-03-18 02:40:02.124 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:02.134 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:02.134 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:02.134 -07 000000579 INF: MeasureProfile done
17-03-18 02:40:02.134 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:40:02.134 -07 000000579 INF: Autofocus finished
17-03-18 02:40:02.304 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.003063,
17-03-18 02:40:02.334 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:02.334 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:40:02.334 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138574538705878. ----------
17-03-18 02:40:02.334 -07 000000610 INF: Cycle	102	Tile	4	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:02.344 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28776, sync = True, waitForSettling = True)
17-03-18 02:40:02.344 -07 000000610 INF: Z Motor: Moving to -0.131728 mm, started at -0.138575 mm, distance = 6.85 um
17-03-18 02:40:02.344 -07 000000610 INF: FPGA: Xmit ZDACW 28776\n [Z Motor]
17-03-18 02:40:02.344 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:40:02.354 -07 000000610 INF: FPGA: 'ZDACW 28776' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:02.354 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:02.354 -07 000000576 INF: FPGA: Recv ZDACR 28776
17-03-18 02:40:02.364 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.364 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:02.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.514 -07 000000561 INF: FPGA: Recv ZSGSRD 29797
17-03-18 02:40:02.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.524 -07 000000461 INF: FPGA: Recv ZSGSRD 29801
17-03-18 02:40:02.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.534 -07 000000462 INF: FPGA: Recv ZSGSRD 29791
17-03-18 02:40:02.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.544 -07 000000591 INF: FPGA: Recv ZSGSRD 29798
17-03-18 02:40:02.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.554 -07 000000629 INF: FPGA: Recv ZSGSRD 29798
17-03-18 02:40:02.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.564 -07 000000502 INF: FPGA: Recv ZSGSRD 29802
17-03-18 02:40:02.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.574 -07 000000455 INF: FPGA: Recv ZSGSRD 29796
17-03-18 02:40:02.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.584 -07 000000424 INF: FPGA: Recv ZSGSRD 29787
17-03-18 02:40:02.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.594 -07 000000502 INF: FPGA: Recv ZSGSRD 29794
17-03-18 02:40:02.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:02.604 -07 000000618 INF: FPGA: Recv ZSGSRD 29796
17-03-18 02:40:02.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:02.614 -07 000000576 INF: FPGA: Recv ZPIEZORD 25292
17-03-18 02:40:02.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:02.624 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.9 V.
17-03-18 02:40:02.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29796 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29796 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29787 (-130.9 uncal um), Max = 29802 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:40:02.624 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29796, posNoise = 6, negNoise = 9
17-03-18 02:40:02.624 -07 000000610 INF: Z Motor: After move to -0.131728, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:02.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:40:02.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:02.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:02.624 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:02.624 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:02.624 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:02.624 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:02.624 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:02.624 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:02.624 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:02.624 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:02.624 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:02.624 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:02.634 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:40:02.634 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:02.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:02.634 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:02.634 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:40:02.634 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:40:02.634 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:40:02.634 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:40:02.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28953 150\n [Camera]
17-03-18 02:40:02.844 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:03.244 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:03.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:03.244 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:03.244 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:03.244 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:40:03.244 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:03.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:03.244 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:03.244 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:03.244 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:40:03.434 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28953 782
17-03-18 02:40:03.584 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:03.624 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:40:03.624 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:40:03.624 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:03.624 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:40:03.624 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:40:03.624 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:03.624 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:03.634 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:03.634 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:40:03.634 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:40:03.774 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:03.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:03.774 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:03.774 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:03.774 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:40:03.774 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:03.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:03.774 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:03.774 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:03.774 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:40:03.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:40:03.964 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:03.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28953 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:40:03.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:03.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131739176987044. ------
17-03-18 02:40:04.094 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:04.094 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13843 mm
17-03-18 02:40:04.094 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:04.094 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30240, sync = True, waitForSettling = False)
17-03-18 02:40:04.094 -07 000000579 INF: Z Motor: Moving to -0.138430 mm, started at -0.131739 mm, distance = -6.69 um
17-03-18 02:40:04.094 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:40:04.094 -07 000000626 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:40:04.094 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:04.104 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:04.104 -07 000000579 INF: FPGA: Xmit ZDACW 30240\n [Z Motor]
17-03-18 02:40:04.104 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:40:04.114 -07 000000579 INF: FPGA: 'ZDACW 30240' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:40:04.114 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:04.114 -07 000000467 INF: FPGA: Recv YRDPOS 127787
17-03-18 02:40:04.124 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:04.124 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:40:04.124 -07 000000626 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:04.124 -07 000000626 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:04.124 -07 000000626 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:40:04.134 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:04.134 -07 000000467 INF: FPGA: Recv ZDACR 30240
17-03-18 02:40:04.144 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:40:04.144 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:04.144 -07 000000579 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:40:04.164 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:40:04.164 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:40:04.164 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:04.164 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:40:04.164 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:40:04.164 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:04.174 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:04.174 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:40:04.174 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:40:04.174 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:40:04.324 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:04.324 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:40:04.514 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:40:04.514 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:40:04.564 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:04.564 -07 000000618 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:40:04.574 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:04.574 -07 000000626 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:04.574 -07 000000626 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:40:04.574 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.837 mm, average velocity = 2.125 mm/sec
17-03-18 02:40:05.524 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:05.524 -07 000000606 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:40:05.534 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:05.534 -07 000000626 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:05.554 -07 000000626 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:05.554 -07 000000626 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:40:05.554 -07 000000626 INF: Y Motor: Moved to 63.2241 after 1465 ms (table move)
17-03-18 02:40:05.564 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138430 mm (DAC = 30240)
17-03-18 02:40:05.564 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.564 -07 000000430 INF: FPGA: Recv ZSGSRD 30837
17-03-18 02:40:05.574 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:40:05.574 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.574 -07 000000502 INF: FPGA: Recv ZSGSRD 30835
17-03-18 02:40:05.584 -07 000000462 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.584 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.584 -07 000000455 INF: FPGA: Recv ZSGSRD 30839
17-03-18 02:40:05.594 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.594 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.594 -07 000000629 INF: FPGA: Recv ZSGSRD 30833
17-03-18 02:40:05.604 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.604 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.604 -07 000000461 INF: FPGA: Recv ZSGSRD 30839
17-03-18 02:40:05.614 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.614 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.614 -07 000000576 INF: FPGA: Recv ZSGSRD 30841
17-03-18 02:40:05.624 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.624 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.624 -07 000000561 INF: FPGA: Recv ZSGSRD 30832
17-03-18 02:40:05.634 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.634 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.634 -07 000000467 INF: FPGA: Recv ZSGSRD 30836
17-03-18 02:40:05.644 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.644 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.644 -07 000000629 INF: FPGA: Recv ZSGSRD 30839
17-03-18 02:40:05.654 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.654 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:05.654 -07 000000618 INF: FPGA: Recv ZSGSRD 30834
17-03-18 02:40:05.664 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.664 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:05.664 -07 000000444 INF: FPGA: Recv ZPIEZORD 26677
17-03-18 02:40:05.674 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:05.674 -07 000000462 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.614 V. Piezo Error = -9.2 V.
17-03-18 02:40:05.674 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30836 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30836 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30832 (-137.6 uncal um), Max = 30841 (-137.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:40:05.674 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30836, posNoise = 5, negNoise = 4
17-03-18 02:40:05.674 -07 000000462 INF: Z Motor: After move to -0.138430, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:05.674 -07 000000462 INF: Z Motor: Settle wait time = 1470 ms, measure time = 106 ms (allowed 150 ms), total time = 1576 ms
17-03-18 02:40:05.674 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:05.724 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:40:05.724 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:05.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:05.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:05.724 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:05.724 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:05.724 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:05.724 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:05.734 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:05.734 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:05.734 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:05.734 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:05.744 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:40:05.744 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:40:05.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:05.794 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:06.084 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:06.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:06.094 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:06.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:06.124 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:06.124 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:06.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:40:06.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:40:06.214 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:06.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:06.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:40:06.224 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:06.224 -07 000000590 INF: Autofocus start
17-03-18 02:40:06.224 -07 000000590 INF: MeasureProfile start
17-03-18 02:40:06.224 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:06.234 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:06.234 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:06.234 -07 000000590 INF: MeasureProfile done
17-03-18 02:40:06.234 -07 000000590 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:40:06.234 -07 000000590 INF: Autofocus finished
17-03-18 02:40:06.434 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:06.434 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:06.434 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138420357614476. ----------
17-03-18 02:40:06.444 -07 000000610 INF: Cycle	102	Tile	5	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:06.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28764, sync = True, waitForSettling = True)
17-03-18 02:40:06.444 -07 000000610 INF: Z Motor: Moving to -0.131673 mm, started at -0.138420 mm, distance = 6.75 um
17-03-18 02:40:06.444 -07 000000610 INF: FPGA: Xmit ZDACW 28764\n [Z Motor]
17-03-18 02:40:06.444 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:40:06.454 -07 000000610 INF: FPGA: 'ZDACW 28764' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:06.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:06.454 -07 000000591 INF: FPGA: Recv ZDACR 28764
17-03-18 02:40:06.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:06.504 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:06.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:06.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.614 -07 000000467 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:40:06.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:06.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.624 -07 000000591 INF: FPGA: Recv ZSGSRD 29792
17-03-18 02:40:06.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.634 -07 000000430 INF: FPGA: Recv ZSGSRD 29784
17-03-18 02:40:06.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.644 -07 000000462 INF: FPGA: Recv ZSGSRD 29783
17-03-18 02:40:06.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.654 -07 000000606 INF: FPGA: Recv ZSGSRD 29791
17-03-18 02:40:06.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.664 -07 000000461 INF: FPGA: Recv ZSGSRD 29788
17-03-18 02:40:06.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.674 -07 000000618 INF: FPGA: Recv ZSGSRD 29784
17-03-18 02:40:06.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.684 -07 000000502 INF: FPGA: Recv ZSGSRD 29787
17-03-18 02:40:06.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.694 -07 000000579 INF: FPGA: Recv ZSGSRD 29789
17-03-18 02:40:06.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:06.704 -07 000000591 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:40:06.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:06.714 -07 000000512 INF: FPGA: Recv ZPIEZORD 25302
17-03-18 02:40:06.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:06.724 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.8 V.
17-03-18 02:40:06.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29788 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29788 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29783 (-130.9 uncal um), Max = 29792 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:40:06.724 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29788, posNoise = 4, negNoise = 5
17-03-18 02:40:06.724 -07 000000610 INF: Z Motor: After move to -0.131673, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:06.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:40:06.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:06.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:06.724 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:06.724 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:06.724 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:06.724 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:06.724 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:06.724 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:06.724 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:06.724 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:06.724 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:06.724 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:06.724 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:40:06.724 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:06.724 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:06.724 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:06.734 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:40:06.734 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:40:06.734 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:40:06.734 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:40:06.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28941 150\n [Camera]
17-03-18 02:40:06.944 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:07.344 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:07.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:07.344 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:07.344 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:07.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:07.344 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:07.344 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:07.344 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:40:07.344 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:07.344 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:40:07.534 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28941 782
17-03-18 02:40:07.674 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.96762,
17-03-18 02:40:07.684 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:07.714 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:40:07.724 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:40:07.724 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:07.724 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:40:07.724 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:40:07.724 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:07.724 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:07.724 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:40:07.724 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:07.734 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:40:07.874 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:07.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:07.874 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:07.874 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:07.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:07.884 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:07.884 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:07.884 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:40:07.884 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:07.884 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 02:40:08.064 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:40:08.064 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:08.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28941 150' command took 2 ms to send, 1316 ms to get response, and 1322 ms overall
17-03-18 02:40:08.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:08.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.13168778328991. ------
17-03-18 02:40:08.074 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:08.074 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13813 mm
17-03-18 02:40:08.074 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:08.074 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:40:08.074 -07 000000444 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:40:08.074 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:08.074 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30174, sync = True, waitForSettling = False)
17-03-18 02:40:08.074 -07 000000590 INF: Z Motor: Moving to -0.138128 mm, started at -0.131688 mm, distance = -6.44 um
17-03-18 02:40:08.084 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:08.084 -07 000000590 INF: FPGA: Xmit ZDACW 30174\n [Z Motor]
17-03-18 02:40:08.084 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:40:08.094 -07 000000590 INF: FPGA: 'ZDACW 30174' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:40:08.094 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:08.094 -07 000000569 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:40:08.104 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:08.104 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:40:08.104 -07 000000444 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:08.224 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:08.224 -07 000000444 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:08.224 -07 000000444 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:40:08.224 -07 000000618 INF: FPGA: Recv ZDACR 30174
17-03-18 02:40:08.234 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 02:40:08.234 -07 000000590 INF: Z Motor: MoveAbsStepped took 155 ms (did NOT wait for settling yet))
17-03-18 02:40:08.234 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:08.274 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:40:08.274 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:40:08.274 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:40:08.274 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:08.274 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:40:08.274 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:08.274 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:08.274 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:08.274 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:40:08.284 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:40:08.304 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:08.304 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 78 ms to get response, and 222 ms overall
17-03-18 02:40:08.604 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:40:08.604 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:40:08.654 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:08.654 -07 000000606 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:40:08.664 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:40:08.664 -07 000000444 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:08.664 -07 000000444 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 02:40:08.664 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.184 mm/sec
17-03-18 02:40:09.614 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:09.614 -07 000000424 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:40:09.624 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:09.624 -07 000000444 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:09.644 -07 000000444 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:09.644 -07 000000444 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:40:09.644 -07 000000444 INF: Y Motor: Moved to 64.0571 after 1569 ms (table move)
17-03-18 02:40:09.644 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138128 mm (DAC = 30174)
17-03-18 02:40:09.644 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.654 -07 000000501 INF: FPGA: Recv ZSGSRD 30796
17-03-18 02:40:09.654 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:40:09.654 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.654 -07 000000569 INF: FPGA: Recv ZSGSRD 30790
17-03-18 02:40:09.664 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.664 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.664 -07 000000462 INF: FPGA: Recv ZSGSRD 30794
17-03-18 02:40:09.674 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.674 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.674 -07 000000512 INF: FPGA: Recv ZSGSRD 30794
17-03-18 02:40:09.684 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.684 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.684 -07 000000629 INF: FPGA: Recv ZSGSRD 30792
17-03-18 02:40:09.694 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.694 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.694 -07 000000501 INF: FPGA: Recv ZSGSRD 30789
17-03-18 02:40:09.704 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.704 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.704 -07 000000576 INF: FPGA: Recv ZSGSRD 30786
17-03-18 02:40:09.714 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.714 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.714 -07 000000502 INF: FPGA: Recv ZSGSRD 30791
17-03-18 02:40:09.724 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.724 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.724 -07 000000444 INF: FPGA: Recv ZSGSRD 30789
17-03-18 02:40:09.734 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.734 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:09.734 -07 000000561 INF: FPGA: Recv ZSGSRD 30791
17-03-18 02:40:09.744 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.744 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:09.744 -07 000000579 INF: FPGA: Recv ZPIEZORD 26627
17-03-18 02:40:09.754 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:09.754 -07 000000467 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.604 V. Piezo Error = -9.2 V.
17-03-18 02:40:09.754 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30791 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30791 (-137.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30786 (-137.3 uncal um), Max = 30796 (-137.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:40:09.754 -07 000000467 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30791, posNoise = 5, negNoise = 5
17-03-18 02:40:09.754 -07 000000467 INF: Z Motor: After move to -0.138128, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:09.754 -07 000000467 INF: Z Motor: Settle wait time = 1573 ms, measure time = 103 ms (allowed 150 ms), total time = 1676 ms
17-03-18 02:40:09.754 -07 000000467 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:09.804 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1729 ms
17-03-18 02:40:09.804 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:09.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:09.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:09.804 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:09.804 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:09.804 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:09.804 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:09.804 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:09.804 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:09.814 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:09.814 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:09.814 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:40:09.814 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:40:09.824 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:09.864 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:10.164 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:10.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:10.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:10.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:10.204 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:10.204 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:10.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:40:10.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:40:10.284 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:10.284 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:10.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:40:10.304 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:10.304 -07 000000569 INF: Autofocus start
17-03-18 02:40:10.304 -07 000000569 INF: MeasureProfile start
17-03-18 02:40:10.304 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:10.314 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:40:10.314 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:10.314 -07 000000569 INF: MeasureProfile done
17-03-18 02:40:10.324 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:40:10.324 -07 000000569 INF: Autofocus finished
17-03-18 02:40:10.514 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:10.514 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:10.514 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138131268068097. ----------
17-03-18 02:40:10.514 -07 000000610 INF: Cycle	102	Tile	6	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:10.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28698, sync = True, waitForSettling = True)
17-03-18 02:40:10.524 -07 000000610 INF: Z Motor: Moving to -0.131371 mm, started at -0.138131 mm, distance = 6.76 um
17-03-18 02:40:10.524 -07 000000610 INF: FPGA: Xmit ZDACW 28698\n [Z Motor]
17-03-18 02:40:10.524 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:40:10.534 -07 000000610 INF: FPGA: 'ZDACW 28698' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:10.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:10.534 -07 000000512 INF: FPGA: Recv ZDACR 28698
17-03-18 02:40:10.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:10.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.694 -07 000000444 INF: FPGA: Recv ZSGSRD 29741
17-03-18 02:40:10.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:10.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.704 -07 000000569 INF: FPGA: Recv ZSGSRD 29736
17-03-18 02:40:10.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.714 -07 000000461 INF: FPGA: Recv ZSGSRD 29746
17-03-18 02:40:10.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.724 -07 000000576 INF: FPGA: Recv ZSGSRD 29737
17-03-18 02:40:10.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.734 -07 000000561 INF: FPGA: Recv ZSGSRD 29740
17-03-18 02:40:10.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.744 -07 000000444 INF: FPGA: Recv ZSGSRD 29738
17-03-18 02:40:10.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.754 -07 000000591 INF: FPGA: Recv ZSGSRD 29736
17-03-18 02:40:10.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.764 -07 000000606 INF: FPGA: Recv ZSGSRD 29744
17-03-18 02:40:10.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.774 -07 000000576 INF: FPGA: Recv ZSGSRD 29739
17-03-18 02:40:10.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:10.784 -07 000000561 INF: FPGA: Recv ZSGSRD 29742
17-03-18 02:40:10.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:10.794 -07 000000455 INF: FPGA: Recv ZPIEZORD 25287
17-03-18 02:40:10.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:10.804 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.8 V.
17-03-18 02:40:10.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29740 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29740 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29736 (-130.6 uncal um), Max = 29746 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:40:10.804 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29740, posNoise = 6, negNoise = 4
17-03-18 02:40:10.804 -07 000000610 INF: Z Motor: After move to -0.131371, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:10.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:40:10.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:10.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:10.804 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:10.804 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:10.804 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:10.804 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:10.804 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:10.804 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:10.804 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:10.804 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:10.804 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:40:10.804 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:10.814 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:40:10.814 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:10.814 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:10.814 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:10.824 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:40:10.824 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:40:10.824 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:40:10.824 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:40:10.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28875 150\n [Camera]
17-03-18 02:40:11.024 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:11.424 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:11.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:11.424 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:11.424 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:11.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:11.424 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:11.424 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:11.424 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:40:11.424 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:11.424 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:40:11.504 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:11.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:11.614 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28875 782
17-03-18 02:40:11.764 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:11.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 367 ms.
17-03-18 02:40:11.794 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-18 02:40:11.794 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:11.794 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:40:11.794 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:40:11.794 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:11.804 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:11.804 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:11.804 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:40:11.804 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:40:11.954 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:11.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:11.954 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:11.954 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:11.954 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:40:11.954 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:11.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:11.954 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:11.954 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:11.954 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:40:12.144 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:40:12.144 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:12.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28875 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-18 02:40:12.144 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:12.144 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131379421107106. ------
17-03-18 02:40:12.154 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:12.154 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13788 mm
17-03-18 02:40:12.154 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:12.154 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:12.154 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 30119, sync = True, waitForSettling = False)
17-03-18 02:40:12.154 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:40:12.154 -07 000000591 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:40:12.154 -07 000000444 INF: Z Motor: Moving to -0.137876 mm, started at -0.131379 mm, distance = -6.50 um
17-03-18 02:40:12.164 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:12.164 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:12.164 -07 000000629 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:40:12.174 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:40:12.174 -07 000000591 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:12.174 -07 000000591 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:12.174 -07 000000591 INF: Y Motor: Moving 1337 steps-11
17-03-18 02:40:12.174 -07 000000444 INF: FPGA: Xmit ZDACW 30119\n [Z Motor]
17-03-18 02:40:12.174 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:40:12.184 -07 000000444 INF: FPGA: 'ZDACW 30119' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:40:12.184 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:12.194 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:12.204 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:12.204 -07 000000455 INF: FPGA: Recv ZDACR 30119
17-03-18 02:40:12.214 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:40:12.214 -07 000000444 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:40:12.344 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:40:12.344 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:40:12.344 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:12.354 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:40:12.354 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:40:12.354 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:12.354 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:12.354 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:12.354 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:40:12.354 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:40:12.384 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:12.384 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:40:12.564 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:40:12.564 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:40:12.614 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:12.614 -07 000000430 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:40:12.624 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:12.624 -07 000000591 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:12.624 -07 000000591 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:40:12.624 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 02:40:13.044 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.970374,
17-03-18 02:40:13.574 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:13.574 -07 000000606 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:40:13.584 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:13.584 -07 000000591 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:13.604 -07 000000591 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:13.604 -07 000000591 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:40:13.604 -07 000000591 INF: Y Motor: Moved to 64.8789 after 1452 ms (table move)
17-03-18 02:40:13.614 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137876 mm (DAC = 30119)
17-03-18 02:40:13.614 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.614 -07 000000626 INF: FPGA: Recv ZSGSRD 30757
17-03-18 02:40:13.624 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:13.624 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.624 -07 000000606 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:40:13.634 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:13.634 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.634 -07 000000629 INF: FPGA: Recv ZSGSRD 30755
17-03-18 02:40:13.644 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:13.644 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.644 -07 000000430 INF: FPGA: Recv ZSGSRD 30758
17-03-18 02:40:13.654 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:13.654 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.654 -07 000000591 INF: FPGA: Recv ZSGSRD 30754
17-03-18 02:40:13.664 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:13.664 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.664 -07 000000626 INF: FPGA: Recv ZSGSRD 30747
17-03-18 02:40:13.674 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:13.674 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.674 -07 000000606 INF: FPGA: Recv ZSGSRD 30749
17-03-18 02:40:13.684 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:13.684 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.684 -07 000000569 INF: FPGA: Recv ZSGSRD 30758
17-03-18 02:40:13.694 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:13.694 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.694 -07 000000455 INF: FPGA: Recv ZSGSRD 30751
17-03-18 02:40:13.704 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:13.704 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:13.704 -07 000000467 INF: FPGA: Recv ZSGSRD 30756
17-03-18 02:40:13.714 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:13.714 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:13.714 -07 000000626 INF: FPGA: Recv ZPIEZORD 26573
17-03-18 02:40:13.724 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:13.724 -07 000000579 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.2 V.
17-03-18 02:40:13.724 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30753 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30754 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30747 (-137.1 uncal um), Max = 30758 (-137.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:13.724 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30753, posNoise = 5, negNoise = 6
17-03-18 02:40:13.724 -07 000000579 INF: Z Motor: After move to -0.137876, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:13.724 -07 000000579 INF: Z Motor: Settle wait time = 1455 ms, measure time = 109 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:40:13.724 -07 000000579 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:13.774 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:40:13.774 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:13.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:13.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:13.774 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:13.774 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:13.774 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:13.774 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:13.774 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:13.774 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:13.784 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:13.784 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:13.794 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:40:13.794 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:40:13.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:13.844 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:14.144 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:14.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:14.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:14.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:40:14.184 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:14.184 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:14.184 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:40:14.264 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 02:40:14.264 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:14.264 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:40:14.264 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 02:40:14.284 -07 000000591 INF: Autofocus start
17-03-18 02:40:14.284 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:14.284 -07 000000591 INF: MeasureProfile start
17-03-18 02:40:14.284 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:14.294 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:14.294 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:14.294 -07 000000591 INF: MeasureProfile done
17-03-18 02:40:14.294 -07 000000591 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:40:14.294 -07 000000591 INF: Autofocus finished
17-03-18 02:40:14.494 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:14.494 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:14.494 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.13788714800671. ----------
17-03-18 02:40:14.494 -07 000000610 INF: Cycle	102	Tile	7	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:14.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28644, sync = True, waitForSettling = True)
17-03-18 02:40:14.504 -07 000000610 INF: Z Motor: Moving to -0.131124 mm, started at -0.137887 mm, distance = 6.76 um
17-03-18 02:40:14.504 -07 000000610 INF: FPGA: Xmit ZDACW 28644\n [Z Motor]
17-03-18 02:40:14.504 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:40:14.514 -07 000000610 INF: FPGA: 'ZDACW 28644' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:14.514 -07 000000424 INF: FPGA: Recv ZDACR 28644
17-03-18 02:40:14.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:14.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.674 -07 000000502 INF: FPGA: Recv ZSGSRD 29702
17-03-18 02:40:14.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.684 -07 000000430 INF: FPGA: Recv ZSGSRD 29707
17-03-18 02:40:14.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.694 -07 000000467 INF: FPGA: Recv ZSGSRD 29697
17-03-18 02:40:14.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.704 -07 000000579 INF: FPGA: Recv ZSGSRD 29699
17-03-18 02:40:14.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.714 -07 000000626 INF: FPGA: Recv ZSGSRD 29703
17-03-18 02:40:14.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.724 -07 000000502 INF: FPGA: Recv ZSGSRD 29703
17-03-18 02:40:14.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.734 -07 000000591 INF: FPGA: Recv ZSGSRD 29704
17-03-18 02:40:14.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.744 -07 000000569 INF: FPGA: Recv ZSGSRD 29704
17-03-18 02:40:14.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.754 -07 000000606 INF: FPGA: Recv ZSGSRD 29703
17-03-18 02:40:14.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:14.764 -07 000000561 INF: FPGA: Recv ZSGSRD 29711
17-03-18 02:40:14.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:14.774 -07 000000444 INF: FPGA: Recv ZPIEZORD 25195
17-03-18 02:40:14.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:14.784 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.9 V.
17-03-18 02:40:14.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29703 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29703 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29697 (-130.3 uncal um), Max = 29711 (-130.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:14.784 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29703, posNoise = 8, negNoise = 6
17-03-18 02:40:14.784 -07 000000610 INF: Z Motor: After move to -0.131124, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:14.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:40:14.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:14.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:14.784 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:14.784 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:14.784 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:14.784 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:14.784 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:14.784 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:14.784 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:14.784 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:14.784 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:40:14.784 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:14.794 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:40:14.794 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:14.794 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:14.794 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:14.794 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:40:14.804 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:40:14.804 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:40:14.804 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:40:14.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28820 150\n [Camera]
17-03-18 02:40:15.004 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:15.404 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:40:15.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:40:15.404 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:15.404 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:15.404 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:40:15.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:40:15.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:40:15.404 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:15.404 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:15.404 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:40:15.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28820 784
17-03-18 02:40:15.744 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:15.784 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:40:15.784 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:40:15.784 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:15.784 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:40:15.784 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:40:15.784 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:15.784 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:15.784 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:40:15.784 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:15.794 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:40:15.934 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:15.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:15.934 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:15.934 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:15.934 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:40:15.934 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:15.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:15.934 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:15.934 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:15.934 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:40:16.124 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:40:16.124 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:16.124 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28820 150' command took 2 ms to send, 1315 ms to get response, and 1322 ms overall
17-03-18 02:40:16.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:16.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131141725257861. ------
17-03-18 02:40:16.134 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:16.134 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13773 mm
17-03-18 02:40:16.134 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:16.134 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:16.134 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30087, sync = True, waitForSettling = False)
17-03-18 02:40:16.134 -07 000000502 INF: Z Motor: Moving to -0.137729 mm, started at -0.131142 mm, distance = -6.59 um
17-03-18 02:40:16.134 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:40:16.134 -07 000000606 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:40:16.144 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:16.144 -07 000000502 INF: FPGA: Xmit ZDACW 30087\n [Z Motor]
17-03-18 02:40:16.144 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:40:16.154 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:16.154 -07 000000502 INF: FPGA: 'ZDACW 30087' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:40:16.154 -07 000000424 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:40:16.164 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:16.164 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:40:16.164 -07 000000606 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:16.284 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:16.284 -07 000000629 INF: FPGA: Recv ZDACR 30087
17-03-18 02:40:16.284 -07 000000606 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:16.284 -07 000000606 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:40:16.294 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-18 02:40:16.294 -07 000000502 INF: Z Motor: MoveAbsStepped took 156 ms (did NOT wait for settling yet))
17-03-18 02:40:16.294 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:16.334 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:40:16.334 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:40:16.334 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:16.334 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:40:16.334 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:40:16.334 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:16.334 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:16.344 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:40:16.344 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:40:16.344 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:40:16.364 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:16.364 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 78 ms to get response, and 222 ms overall
17-03-18 02:40:16.504 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:16.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:16.664 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:40:16.664 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-18 02:40:16.714 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:16.714 -07 000000591 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:40:16.724 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:40:16.724 -07 000000606 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:16.724 -07 000000606 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:40:16.724 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.844 mm, average velocity = 2.220 mm/sec
17-03-18 02:40:17.674 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:17.674 -07 000000467 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:40:17.684 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.684 -07 000000606 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:17.714 -07 000000606 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:17.714 -07 000000606 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:40:17.714 -07 000000606 INF: Y Motor: Moved to 65.7144 after 1577 ms (table move)
17-03-18 02:40:17.714 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137729 mm (DAC = 30087)
17-03-18 02:40:17.714 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.714 -07 000000591 INF: FPGA: Recv ZSGSRD 30736
17-03-18 02:40:17.724 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:40:17.724 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.724 -07 000000467 INF: FPGA: Recv ZSGSRD 30734
17-03-18 02:40:17.734 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.734 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.734 -07 000000626 INF: FPGA: Recv ZSGSRD 30735
17-03-18 02:40:17.744 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.744 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.744 -07 000000501 INF: FPGA: Recv ZSGSRD 30732
17-03-18 02:40:17.754 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.754 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.754 -07 000000606 INF: FPGA: Recv ZSGSRD 30730
17-03-18 02:40:17.764 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.764 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.764 -07 000000424 INF: FPGA: Recv ZSGSRD 30727
17-03-18 02:40:17.774 -07 000000430 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.784 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.784 -07 000000569 INF: FPGA: Recv ZSGSRD 30732
17-03-18 02:40:17.794 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:40:17.794 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.794 -07 000000502 INF: FPGA: Recv ZSGSRD 30727
17-03-18 02:40:17.804 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.804 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.804 -07 000000561 INF: FPGA: Recv ZSGSRD 30729
17-03-18 02:40:17.814 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.814 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:17.814 -07 000000626 INF: FPGA: Recv ZSGSRD 30733
17-03-18 02:40:17.824 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.824 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:17.824 -07 000000606 INF: FPGA: Recv ZPIEZORD 26567
17-03-18 02:40:17.834 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:17.834 -07 000000430 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -9.2 V.
17-03-18 02:40:17.834 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30732 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30732 (-137.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30727 (-136.9 uncal um), Max = 30736 (-137.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:40:17.834 -07 000000430 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30732, posNoise = 4, negNoise = 5
17-03-18 02:40:17.834 -07 000000430 INF: Z Motor: After move to -0.137729, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:17.834 -07 000000430 INF: Z Motor: Settle wait time = 1580 ms, measure time = 117 ms (allowed 150 ms), total time = 1697 ms
17-03-18 02:40:17.834 -07 000000430 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:17.874 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1740 ms
17-03-18 02:40:17.874 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:17.874 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:17.874 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:17.874 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:17.874 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:17.874 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:17.874 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:17.874 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:40:17.874 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:17.884 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:17.884 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:17.894 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:40:17.894 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:40:17.894 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:17.944 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:18.244 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:18.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:18.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:18.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:18.284 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:18.284 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:18.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:40:18.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:40:18.354 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:18.354 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:18.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:40:18.384 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:18.394 -07 000000424 INF: Autofocus start
17-03-18 02:40:18.394 -07 000000424 INF: MeasureProfile start
17-03-18 02:40:18.394 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:18.404 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:18.404 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:18.404 -07 000000424 INF: MeasureProfile done
17-03-18 02:40:18.404 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:40:18.404 -07 000000424 INF: Autofocus finished
17-03-18 02:40:18.424 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.98264,
17-03-18 02:40:18.604 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:18.604 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:18.614 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137752239551733. ----------
17-03-18 02:40:18.614 -07 000000610 INF: Cycle	102	Tile	8	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:18.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28594, sync = True, waitForSettling = True)
17-03-18 02:40:18.614 -07 000000610 INF: Z Motor: Moving to -0.130895 mm, started at -0.137752 mm, distance = 6.86 um
17-03-18 02:40:18.614 -07 000000610 INF: FPGA: Xmit ZDACW 28594\n [Z Motor]
17-03-18 02:40:18.614 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:40:18.624 -07 000000610 INF: FPGA: 'ZDACW 28594' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:18.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:18.624 -07 000000455 INF: FPGA: Recv ZDACR 28594
17-03-18 02:40:18.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:18.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.784 -07 000000606 INF: FPGA: Recv ZSGSRD 29664
17-03-18 02:40:18.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:18.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.794 -07 000000502 INF: FPGA: Recv ZSGSRD 29669
17-03-18 02:40:18.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.804 -07 000000467 INF: FPGA: Recv ZSGSRD 29670
17-03-18 02:40:18.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.814 -07 000000512 INF: FPGA: Recv ZSGSRD 29663
17-03-18 02:40:18.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.824 -07 000000579 INF: FPGA: Recv ZSGSRD 29668
17-03-18 02:40:18.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.834 -07 000000430 INF: FPGA: Recv ZSGSRD 29663
17-03-18 02:40:18.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.844 -07 000000590 INF: FPGA: Recv ZSGSRD 29670
17-03-18 02:40:18.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.854 -07 000000501 INF: FPGA: Recv ZSGSRD 29668
17-03-18 02:40:18.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.864 -07 000000618 INF: FPGA: Recv ZSGSRD 29665
17-03-18 02:40:18.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:18.874 -07 000000444 INF: FPGA: Recv ZSGSRD 29670
17-03-18 02:40:18.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:18.884 -07 000000591 INF: FPGA: Recv ZPIEZORD 25172
17-03-18 02:40:18.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:18.894 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.9 V.
17-03-18 02:40:18.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29667 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29668 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29663 (-130.1 uncal um), Max = 29670 (-130.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:40:18.894 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29667, posNoise = 3, negNoise = 4
17-03-18 02:40:18.894 -07 000000610 INF: Z Motor: After move to -0.130895, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:18.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:40:18.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:18.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:18.894 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:18.894 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:18.894 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:18.894 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:18.894 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:18.894 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:18.894 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:40:18.894 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:18.894 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:18.894 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:18.904 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:40:18.904 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:18.904 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:18.904 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:18.914 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:40:18.914 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:40:18.914 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:40:18.914 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:40:18.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28771 150\n [Camera]
17-03-18 02:40:19.114 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:19.514 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:19.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:19.514 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:19.514 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:19.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:19.514 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:19.514 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:19.514 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:40:19.524 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:19.524 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:40:19.704 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28771 782
17-03-18 02:40:19.854 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:19.894 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:40:19.894 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:40:19.894 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:19.894 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:40:19.894 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:40:19.894 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:19.894 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:19.894 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:40:19.894 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:19.904 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:40:20.044 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:20.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:20.044 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:20.044 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:20.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:20.044 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:20.054 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:20.054 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:40:20.054 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:20.054 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:40:20.234 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:40:20.234 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:20.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28771 150' command took 2 ms to send, 1316 ms to get response, and 1322 ms overall
17-03-18 02:40:20.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:20.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130910453620757. ------
17-03-18 02:40:20.244 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:20.244 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13728 mm
17-03-18 02:40:20.244 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:20.354 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:20.364 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 02:40:20.364 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:20.364 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29989, sync = True, waitForSettling = False)
17-03-18 02:40:20.364 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:40:20.364 -07 000000467 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:40:20.364 -07 000000444 INF: Z Motor: Moving to -0.137281 mm, started at -0.130910 mm, distance = -6.37 um
17-03-18 02:40:20.374 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:20.374 -07 000000576 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:40:20.384 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:40:20.384 -07 000000467 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:20.384 -07 000000467 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:20.384 -07 000000467 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:40:20.384 -07 000000444 INF: FPGA: Xmit ZDACW 29989\n [Z Motor]
17-03-18 02:40:20.384 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:40:20.394 -07 000000444 INF: FPGA: 'ZDACW 29989' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:40:20.394 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:20.394 -07 000000455 INF: FPGA: Recv ZDACR 29989
17-03-18 02:40:20.404 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:20.404 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:20.404 -07 000000444 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:40:20.454 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:40:20.454 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:40:20.454 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:20.454 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:40:20.454 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:40:20.454 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:20.454 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:20.454 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:20.454 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:40:20.464 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:40:20.564 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:20.564 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:20.774 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:40:20.774 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:40:20.824 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:20.824 -07 000000444 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:40:20.834 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:20.834 -07 000000467 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:20.834 -07 000000467 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:40:20.834 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 02:40:21.504 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:21.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:21.784 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:21.784 -07 000000455 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:40:21.794 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:21.794 -07 000000467 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:21.814 -07 000000467 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:21.814 -07 000000467 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:40:21.814 -07 000000467 INF: Y Motor: Moved to 66.5391 after 1457 ms (table move)
17-03-18 02:40:21.824 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137281 mm (DAC = 29989)
17-03-18 02:40:21.824 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.824 -07 000000569 INF: FPGA: Recv ZSGSRD 30666
17-03-18 02:40:21.834 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:21.834 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.834 -07 000000461 INF: FPGA: Recv ZSGSRD 30664
17-03-18 02:40:21.844 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.844 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.844 -07 000000444 INF: FPGA: Recv ZSGSRD 30661
17-03-18 02:40:21.854 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.854 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.854 -07 000000569 INF: FPGA: Recv ZSGSRD 30661
17-03-18 02:40:21.864 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.864 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.864 -07 000000430 INF: FPGA: Recv ZSGSRD 30660
17-03-18 02:40:21.874 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.874 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.874 -07 000000591 INF: FPGA: Recv ZSGSRD 30660
17-03-18 02:40:21.884 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.884 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.884 -07 000000512 INF: FPGA: Recv ZSGSRD 30658
17-03-18 02:40:21.894 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.894 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.894 -07 000000561 INF: FPGA: Recv ZSGSRD 30657
17-03-18 02:40:21.904 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.904 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.904 -07 000000467 INF: FPGA: Recv ZSGSRD 30662
17-03-18 02:40:21.914 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.914 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:21.914 -07 000000626 INF: FPGA: Recv ZSGSRD 30663
17-03-18 02:40:21.924 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.924 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:21.924 -07 000000444 INF: FPGA: Recv ZPIEZORD 26474
17-03-18 02:40:21.934 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:21.934 -07 000000590 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.2 V.
17-03-18 02:40:21.934 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30661 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30661 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30657 (-136.5 uncal um), Max = 30666 (-136.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:40:21.934 -07 000000590 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30661, posNoise = 5, negNoise = 4
17-03-18 02:40:21.934 -07 000000590 INF: Z Motor: After move to -0.137281, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:21.934 -07 000000590 INF: Z Motor: Settle wait time = 1461 ms, measure time = 108 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:40:21.934 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:21.984 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1738 ms
17-03-18 02:40:21.984 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:21.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:21.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:21.984 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:21.984 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:21.984 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:21.984 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:21.984 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:21.984 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:21.994 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:21.994 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:22.004 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:40:22.004 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:40:22.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:22.054 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:22.354 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:22.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:22.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:22.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:22.384 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:22.394 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:22.394 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:40:22.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:40:22.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:22.474 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:22.474 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:40:22.494 -07 000000590 INF: Autofocus start
17-03-18 02:40:22.494 -07 000000590 INF: MeasureProfile start
17-03-18 02:40:22.494 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:22.504 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:22.504 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:40:22.504 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:22.504 -07 000000590 INF: MeasureProfile done
17-03-18 02:40:22.504 -07 000000590 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:40:22.504 -07 000000590 INF: Autofocus finished
17-03-18 02:40:22.704 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:22.704 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:40:22.704 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137296120489668. ----------
17-03-18 02:40:22.714 -07 000000610 INF: Cycle	102	Tile	9	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:22.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28484, sync = True, waitForSettling = True)
17-03-18 02:40:22.714 -07 000000610 INF: Z Motor: Moving to -0.130391 mm, started at -0.137296 mm, distance = 6.90 um
17-03-18 02:40:22.714 -07 000000610 INF: FPGA: Xmit ZDACW 28484\n [Z Motor]
17-03-18 02:40:22.714 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:40:22.724 -07 000000610 INF: FPGA: 'ZDACW 28484' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:22.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:22.724 -07 000000512 INF: FPGA: Recv ZDACR 28484
17-03-18 02:40:22.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:22.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.884 -07 000000579 INF: FPGA: Recv ZSGSRD 29592
17-03-18 02:40:22.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:22.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.894 -07 000000430 INF: FPGA: Recv ZSGSRD 29591
17-03-18 02:40:22.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.904 -07 000000576 INF: FPGA: Recv ZSGSRD 29584
17-03-18 02:40:22.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.914 -07 000000502 INF: FPGA: Recv ZSGSRD 29584
17-03-18 02:40:22.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.924 -07 000000629 INF: FPGA: Recv ZSGSRD 29587
17-03-18 02:40:22.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.934 -07 000000462 INF: FPGA: Recv ZSGSRD 29590
17-03-18 02:40:22.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.944 -07 000000461 INF: FPGA: Recv ZSGSRD 29585
17-03-18 02:40:22.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.954 -07 000000512 INF: FPGA: Recv ZSGSRD 29590
17-03-18 02:40:22.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.964 -07 000000606 INF: FPGA: Recv ZSGSRD 29592
17-03-18 02:40:22.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:22.974 -07 000000629 INF: FPGA: Recv ZSGSRD 29585
17-03-18 02:40:22.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:22.984 -07 000000576 INF: FPGA: Recv ZPIEZORD 25071
17-03-18 02:40:22.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:22.994 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.346 V. Piezo Error = -9.9 V.
17-03-18 02:40:22.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29588 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29588 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29584 (-129.6 uncal um), Max = 29592 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:40:22.994 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29588, posNoise = 4, negNoise = 4
17-03-18 02:40:22.994 -07 000000610 INF: Z Motor: After move to -0.130391, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:22.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:40:22.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:22.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:22.994 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:22.994 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:22.994 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:22.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:22.994 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:22.994 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:22.994 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:22.994 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:22.994 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:22.994 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:23.004 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:40:23.004 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:23.004 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:23.004 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:23.014 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:40:23.014 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:40:23.014 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:40:23.014 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:40:23.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28661 150\n [Camera]
17-03-18 02:40:23.214 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:23.614 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:23.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:23.614 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:23.614 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:23.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:23.614 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:23.614 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:23.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:40:23.624 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:23.624 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:40:23.784 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.994908,
17-03-18 02:40:23.804 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28661 782
17-03-18 02:40:23.954 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:23.994 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:40:23.994 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:40:23.994 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:23.994 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:40:23.994 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:40:23.994 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:23.994 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:40:23.994 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:40:23.994 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:40:24.004 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:40:24.144 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:24.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:24.144 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:24.144 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:24.144 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:40:24.144 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:24.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:24.144 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:24.144 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:24.144 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:40:24.334 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:40:24.334 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:24.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28661 150' command took 2 ms to send, 1318 ms to get response, and 1322 ms overall
17-03-18 02:40:24.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:24.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130402940861558. ------
17-03-18 02:40:24.344 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:24.344 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13721 mm
17-03-18 02:40:24.344 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:24.344 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:24.344 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:40:24.344 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:40:24.344 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29973, sync = True, waitForSettling = False)
17-03-18 02:40:24.344 -07 000000424 INF: Z Motor: Moving to -0.137208 mm, started at -0.130403 mm, distance = -6.80 um
17-03-18 02:40:24.354 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:24.354 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:24.354 -07 000000626 INF: FPGA: Recv YRDPOS 136273
17-03-18 02:40:24.364 -07 000000424 INF: FPGA: Xmit ZDACW 29973\n [Z Motor]
17-03-18 02:40:24.364 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:40:24.364 -07 000000576 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:24.364 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:40:24.364 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:24.364 -07 000000576 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:40:24.374 -07 000000424 INF: FPGA: 'ZDACW 29973' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:40:24.374 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:24.384 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:24.394 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:24.394 -07 000000444 INF: FPGA: Recv ZDACR 29973
17-03-18 02:40:24.404 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:40:24.404 -07 000000424 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:40:24.534 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:40:24.534 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:40:24.534 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:24.534 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:40:24.534 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:40:24.534 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:24.534 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:24.544 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:40:24.544 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:40:24.544 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:40:24.574 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:24.574 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 224 ms overall
17-03-18 02:40:24.754 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:40:24.754 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:40:24.804 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:24.804 -07 000000561 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:40:24.814 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:24.814 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:24.814 -07 000000576 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 02:40:24.814 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec
17-03-18 02:40:25.764 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:25.764 -07 000000591 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:40:25.774 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:25.774 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:25.794 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:25.794 -07 000000576 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:40:25.794 -07 000000576 INF: Y Motor: Moved to 67.3721 after 1450 ms (table move)
17-03-18 02:40:25.804 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137208 mm (DAC = 29973)
17-03-18 02:40:25.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.804 -07 000000606 INF: FPGA: Recv ZSGSRD 30650
17-03-18 02:40:25.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:25.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.814 -07 000000512 INF: FPGA: Recv ZSGSRD 30652
17-03-18 02:40:25.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.824 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.824 -07 000000561 INF: FPGA: Recv ZSGSRD 30644
17-03-18 02:40:25.834 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.834 -07 000000618 INF: FPGA: Recv ZSGSRD 30655
17-03-18 02:40:25.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.844 -07 000000444 INF: FPGA: Recv ZSGSRD 30653
17-03-18 02:40:25.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.854 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.854 -07 000000462 INF: FPGA: Recv ZSGSRD 30645
17-03-18 02:40:25.864 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.864 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.864 -07 000000606 INF: FPGA: Recv ZSGSRD 30644
17-03-18 02:40:25.874 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.874 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.874 -07 000000626 INF: FPGA: Recv ZSGSRD 30645
17-03-18 02:40:25.884 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.884 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.884 -07 000000618 INF: FPGA: Recv ZSGSRD 30649
17-03-18 02:40:25.894 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.894 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:25.894 -07 000000424 INF: FPGA: Recv ZSGSRD 30637
17-03-18 02:40:25.904 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.904 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:25.904 -07 000000444 INF: FPGA: Recv ZPIEZORD 26495
17-03-18 02:40:25.914 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:25.914 -07 000000467 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.574 V. Piezo Error = -9.1 V.
17-03-18 02:40:25.914 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30647 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30647 (-136.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30637 (-136.3 uncal um), Max = 30655 (-136.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:40:25.914 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30647, posNoise = 8, negNoise = 10
17-03-18 02:40:25.914 -07 000000467 INF: Z Motor: After move to -0.137208, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:25.914 -07 000000467 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:40:25.914 -07 000000467 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:25.964 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:40:25.964 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:25.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:25.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:25.964 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:25.964 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:25.964 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:25.964 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:25.964 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:40:25.964 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:25.974 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:25.974 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:25.984 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:40:25.984 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:40:25.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:26.034 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:26.324 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:26.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:26.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:26.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:40:26.364 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:26.374 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:26.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:40:26.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 123 ms.
17-03-18 02:40:26.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:26.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:40:26.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:40:26.474 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:26.474 -07 000000576 INF: Autofocus start
17-03-18 02:40:26.474 -07 000000576 INF: MeasureProfile start
17-03-18 02:40:26.484 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:26.484 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:40:26.484 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:26.494 -07 000000576 INF: MeasureProfile done
17-03-18 02:40:26.494 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:40:26.494 -07 000000576 INF: Autofocus finished
17-03-18 02:40:26.504 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:26.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:26.684 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:26.684 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:40:26.684 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137206181519683. ----------
17-03-18 02:40:26.694 -07 000000610 INF: Cycle	102	Tile	10	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:26.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28497, sync = True, waitForSettling = True)
17-03-18 02:40:26.694 -07 000000610 INF: Z Motor: Moving to -0.130451 mm, started at -0.137206 mm, distance = 6.76 um
17-03-18 02:40:26.694 -07 000000610 INF: FPGA: Xmit ZDACW 28497\n [Z Motor]
17-03-18 02:40:26.694 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:40:26.704 -07 000000610 INF: FPGA: 'ZDACW 28497' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:26.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:26.704 -07 000000606 INF: FPGA: Recv ZDACR 28497
17-03-18 02:40:26.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:26.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.864 -07 000000512 INF: FPGA: Recv ZSGSRD 29599
17-03-18 02:40:26.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.874 -07 000000591 INF: FPGA: Recv ZSGSRD 29607
17-03-18 02:40:26.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.884 -07 000000561 INF: FPGA: Recv ZSGSRD 29598
17-03-18 02:40:26.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29601
17-03-18 02:40:26.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.904 -07 000000430 INF: FPGA: Recv ZSGSRD 29602
17-03-18 02:40:26.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.914 -07 000000579 INF: FPGA: Recv ZSGSRD 29592
17-03-18 02:40:26.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.924 -07 000000467 INF: FPGA: Recv ZSGSRD 29602
17-03-18 02:40:26.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.934 -07 000000462 INF: FPGA: Recv ZSGSRD 29598
17-03-18 02:40:26.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.944 -07 000000576 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:40:26.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:26.954 -07 000000606 INF: FPGA: Recv ZSGSRD 29598
17-03-18 02:40:26.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:26.964 -07 000000569 INF: FPGA: Recv ZPIEZORD 25094
17-03-18 02:40:26.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:26.974 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.9 V.
17-03-18 02:40:26.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29599 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29598 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29592 (-129.6 uncal um), Max = 29607 (-129.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:40:26.974 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29599, posNoise = 8, negNoise = 7
17-03-18 02:40:26.974 -07 000000610 INF: Z Motor: After move to -0.130451, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:26.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:40:26.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:26.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:26.974 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:26.974 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:26.974 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:26.974 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:26.974 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:26.974 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:26.974 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:26.974 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:26.974 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:26.974 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:26.984 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:26.984 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:26.984 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:40:26.984 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:26.994 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:40:26.994 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:40:26.994 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:40:26.994 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:40:26.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28674 150\n [Camera]
17-03-18 02:40:27.194 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:40:27.594 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:27.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:27.594 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:27.594 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:27.594 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:40:27.604 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:27.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:27.604 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:27.604 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:27.604 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:40:27.784 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28674 782
17-03-18 02:40:27.934 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:27.974 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:40:27.974 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:40:27.974 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:27.974 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:27.974 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:40:27.974 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:40:27.974 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:27.984 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:27.984 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:40:27.984 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:40:28.124 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:28.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:28.124 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:28.124 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:28.124 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:40:28.134 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:28.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:28.134 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:28.134 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:28.134 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:40:28.314 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:40:28.314 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:28.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28674 150' command took 2 ms to send, 1319 ms to get response, and 1326 ms overall
17-03-18 02:40:28.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:28.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130473607195118. ------
17-03-18 02:40:28.324 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:28.324 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13684 mm
17-03-18 02:40:28.324 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:28.324 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:40:28.324 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29892, sync = True, waitForSettling = False)
17-03-18 02:40:28.324 -07 000000591 INF: Z Motor: Moving to -0.136837 mm, started at -0.130474 mm, distance = -6.36 um
17-03-18 02:40:28.324 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:40:28.324 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:28.444 -07 000000591 INF: FPGA: Xmit ZDACW 29892\n [Z Motor]
17-03-18 02:40:28.444 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-18 02:40:28.444 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:40:28.454 -07 000000591 INF: FPGA: 'ZDACW 29892' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 02:40:28.454 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:28.454 -07 000000618 INF: FPGA: Recv ZDACR 29892
17-03-18 02:40:28.464 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:28.464 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:28.464 -07 000000591 INF: Z Motor: MoveAbsStepped took 133 ms (did NOT wait for settling yet))
17-03-18 02:40:28.464 -07 000000424 INF: FPGA: Recv YRDPOS 137979
17-03-18 02:40:28.474 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 142 ms overall
17-03-18 02:40:28.474 -07 000000626 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:28.474 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:28.474 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:28.474 -07 000000626 INF: Y Motor: Moving 1344 steps-22
17-03-18 02:40:28.484 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:28.524 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:40:28.524 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:40:28.524 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:28.524 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:40:28.534 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:40:28.534 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:28.534 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:28.534 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:40:28.534 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:40:28.544 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:40:28.674 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:28.674 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 227 ms overall
17-03-18 02:40:28.854 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:40:28.854 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:40:28.904 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:28.904 -07 000000576 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:40:28.914 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:40:28.914 -07 000000626 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:28.914 -07 000000626 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:40:28.914 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.841 mm, average velocity = 2.189 mm/sec
17-03-18 02:40:29.154 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.031682,
17-03-18 02:40:29.864 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:29.864 -07 000000629 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:40:29.874 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:29.874 -07 000000626 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:29.894 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:29.894 -07 000000626 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:40:29.894 -07 000000626 INF: Y Motor: Moved to 68.2056 after 1569 ms (table move)
17-03-18 02:40:29.894 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136837 mm (DAC = 29892)
17-03-18 02:40:29.894 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.904 -07 000000618 INF: FPGA: Recv ZSGSRD 30592
17-03-18 02:40:29.914 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:29.914 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.914 -07 000000462 INF: FPGA: Recv ZSGSRD 30595
17-03-18 02:40:29.924 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:29.924 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.924 -07 000000430 INF: FPGA: Recv ZSGSRD 30593
17-03-18 02:40:29.934 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:29.934 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.934 -07 000000444 INF: FPGA: Recv ZSGSRD 30595
17-03-18 02:40:29.944 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:29.944 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.944 -07 000000606 INF: FPGA: Recv ZSGSRD 30585
17-03-18 02:40:29.954 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:29.954 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.954 -07 000000455 INF: FPGA: Recv ZSGSRD 30586
17-03-18 02:40:29.964 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:29.964 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.964 -07 000000501 INF: FPGA: Recv ZSGSRD 30594
17-03-18 02:40:29.974 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:29.974 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.974 -07 000000626 INF: FPGA: Recv ZSGSRD 30590
17-03-18 02:40:29.984 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:29.984 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.984 -07 000000502 INF: FPGA: Recv ZSGSRD 30590
17-03-18 02:40:29.994 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:29.994 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:29.994 -07 000000462 INF: FPGA: Recv ZSGSRD 30590
17-03-18 02:40:30.004 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:30.004 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:30.004 -07 000000576 INF: FPGA: Recv ZPIEZORD 26400
17-03-18 02:40:30.014 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:30.014 -07 000000579 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.561 V. Piezo Error = -9.2 V.
17-03-18 02:40:30.014 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30591 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30591 (-136.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30585 (-136.0 uncal um), Max = 30595 (-136.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:30.014 -07 000000579 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30591, posNoise = 4, negNoise = 6
17-03-18 02:40:30.014 -07 000000579 INF: Z Motor: After move to -0.136837, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:30.014 -07 000000579 INF: Z Motor: Settle wait time = 1572 ms, measure time = 111 ms (allowed 150 ms), total time = 1683 ms
17-03-18 02:40:30.014 -07 000000579 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:30.054 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-18 02:40:30.054 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:30.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:30.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:30.054 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:30.054 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:30.054 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:30.054 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:30.054 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:30.054 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:30.064 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:30.064 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:30.074 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:40:30.074 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:40:30.074 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:30.124 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:30.424 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:30.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:30.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:30.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:30.464 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:30.464 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:30.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 02:40:30.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:40:30.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:30.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:30.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:40:30.564 -07 000000576 INF: Autofocus start
17-03-18 02:40:30.564 -07 000000576 INF: MeasureProfile start
17-03-18 02:40:30.564 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:30.564 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:30.574 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:30.574 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:30.574 -07 000000576 INF: MeasureProfile done
17-03-18 02:40:30.574 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:40:30.574 -07 000000576 INF: Autofocus finished
17-03-18 02:40:30.774 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:30.774 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:40:30.774 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136846425639744. ----------
17-03-18 02:40:30.774 -07 000000610 INF: Cycle	102	Tile	11	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:30.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28400, sync = True, waitForSettling = True)
17-03-18 02:40:30.784 -07 000000610 INF: Z Motor: Moving to -0.130007 mm, started at -0.136846 mm, distance = 6.84 um
17-03-18 02:40:30.784 -07 000000610 INF: FPGA: Xmit ZDACW 28400\n [Z Motor]
17-03-18 02:40:30.784 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:40:30.794 -07 000000610 INF: FPGA: 'ZDACW 28400' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:30.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:30.794 -07 000000444 INF: FPGA: Recv ZDACR 28400
17-03-18 02:40:30.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:30.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:30.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:30.954 -07 000000561 INF: FPGA: Recv ZSGSRD 29526
17-03-18 02:40:30.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:30.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:30.964 -07 000000462 INF: FPGA: Recv ZSGSRD 29527
17-03-18 02:40:30.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:30.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:30.974 -07 000000501 INF: FPGA: Recv ZSGSRD 29528
17-03-18 02:40:30.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:30.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:30.984 -07 000000576 INF: FPGA: Recv ZSGSRD 29521
17-03-18 02:40:30.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:30.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:30.994 -07 000000502 INF: FPGA: Recv ZSGSRD 29529
17-03-18 02:40:31.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:31.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:31.004 -07 000000629 INF: FPGA: Recv ZSGSRD 29530
17-03-18 02:40:31.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:31.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:31.014 -07 000000579 INF: FPGA: Recv ZSGSRD 29525
17-03-18 02:40:31.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:31.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:31.024 -07 000000444 INF: FPGA: Recv ZSGSRD 29529
17-03-18 02:40:31.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:31.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:31.034 -07 000000455 INF: FPGA: Recv ZSGSRD 29527
17-03-18 02:40:31.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:31.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:31.044 -07 000000606 INF: FPGA: Recv ZSGSRD 29527
17-03-18 02:40:31.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:31.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:31.054 -07 000000561 INF: FPGA: Recv ZPIEZORD 25007
17-03-18 02:40:31.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:31.064 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.9 V.
17-03-18 02:40:31.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29527 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29527 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29521 (-129.2 uncal um), Max = 29530 (-129.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:31.064 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29527, posNoise = 3, negNoise = 6
17-03-18 02:40:31.064 -07 000000610 INF: Z Motor: After move to -0.130007, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:31.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:40:31.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:31.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:31.064 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:31.064 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:31.064 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:31.064 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:31.064 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:31.064 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:31.064 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:40:31.064 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:31.064 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:31.064 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:31.074 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:31.074 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:31.074 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:40:31.074 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:31.084 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:40:31.084 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:40:31.084 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:40:31.084 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:40:31.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28576 150\n [Camera]
17-03-18 02:40:31.284 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:31.504 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:31.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:31.684 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:31.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:31.684 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:31.684 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:31.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:31.684 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:31.684 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:31.684 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:40:31.694 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:31.694 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:40:31.874 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28576 782
17-03-18 02:40:32.024 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:32.064 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:40:32.064 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:40:32.064 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:32.064 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:40:32.064 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:40:32.064 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:32.064 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:32.064 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:40:32.064 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:32.074 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:40:32.214 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:32.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:32.214 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:32.214 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:32.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:32.224 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:32.224 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:32.344 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:40:32.344 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:32.354 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:40:32.404 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:40:32.404 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:32.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28576 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:40:32.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:32.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130011063920911. ------
17-03-18 02:40:32.414 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:32.414 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13667 mm
17-03-18 02:40:32.414 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:32.414 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:40:32.414 -07 000000444 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 02:40:32.414 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29856, sync = True, waitForSettling = False)
17-03-18 02:40:32.414 -07 000000591 INF: Z Motor: Moving to -0.136672 mm, started at -0.130011 mm, distance = -6.66 um
17-03-18 02:40:32.414 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:32.424 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:32.424 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:32.424 -07 000000501 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:40:32.434 -07 000000591 INF: FPGA: Xmit ZDACW 29856\n [Z Motor]
17-03-18 02:40:32.434 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:40:32.434 -07 000000444 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:32.434 -07 000000444 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:32.434 -07 000000444 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:40:32.434 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:40:32.444 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:32.444 -07 000000591 INF: FPGA: 'ZDACW 29856' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:40:32.454 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:32.464 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:32.464 -07 000000569 INF: FPGA: Recv ZDACR 29856
17-03-18 02:40:32.474 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:40:32.474 -07 000000591 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:40:32.644 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:32.644 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:40:32.744 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:40:32.744 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:40:32.744 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-18 02:40:32.744 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:32.744 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:40:32.744 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:32.754 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:32.754 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-18 02:40:32.754 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:32.764 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-18 02:40:32.824 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:40:32.824 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:40:32.874 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:32.874 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:40:32.884 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:32.884 -07 000000444 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:32.884 -07 000000444 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:40:32.884 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 02:40:33.834 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:33.834 -07 000000502 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:40:33.844 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:33.844 -07 000000444 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:33.864 -07 000000444 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:33.864 -07 000000444 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:40:33.864 -07 000000444 INF: Y Motor: Moved to 69.0278 after 1452 ms (table move)
17-03-18 02:40:33.874 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136672 mm (DAC = 29856)
17-03-18 02:40:33.874 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.874 -07 000000501 INF: FPGA: Recv ZSGSRD 30566
17-03-18 02:40:33.884 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:33.894 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.894 -07 000000569 INF: FPGA: Recv ZSGSRD 30568
17-03-18 02:40:33.904 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:40:33.904 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.904 -07 000000626 INF: FPGA: Recv ZSGSRD 30559
17-03-18 02:40:33.914 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:33.914 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.914 -07 000000576 INF: FPGA: Recv ZSGSRD 30568
17-03-18 02:40:33.924 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:33.924 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.924 -07 000000629 INF: FPGA: Recv ZSGSRD 30565
17-03-18 02:40:33.934 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:33.934 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.934 -07 000000430 INF: FPGA: Recv ZSGSRD 30563
17-03-18 02:40:33.944 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:33.944 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.944 -07 000000501 INF: FPGA: Recv ZSGSRD 30560
17-03-18 02:40:33.954 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:33.954 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.954 -07 000000502 INF: FPGA: Recv ZSGSRD 30565
17-03-18 02:40:33.964 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:33.964 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.964 -07 000000444 INF: FPGA: Recv ZSGSRD 30568
17-03-18 02:40:33.974 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:33.974 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:33.974 -07 000000455 INF: FPGA: Recv ZSGSRD 30569
17-03-18 02:40:33.984 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:33.984 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:33.984 -07 000000430 INF: FPGA: Recv ZPIEZORD 26378
17-03-18 02:40:33.994 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:33.994 -07 000000590 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.556 V. Piezo Error = -9.2 V.
17-03-18 02:40:33.994 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30565 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30566 (-135.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30559 (-135.8 uncal um), Max = 30569 (-135.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:33.994 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30565, posNoise = 4, negNoise = 6
17-03-18 02:40:33.994 -07 000000590 INF: Z Motor: After move to -0.136672, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:33.994 -07 000000590 INF: Z Motor: Settle wait time = 1454 ms, measure time = 120 ms (allowed 150 ms), total time = 1574 ms
17-03-18 02:40:33.994 -07 000000590 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:34.024 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:40:34.024 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:34.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:34.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:34.024 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:34.024 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:34.024 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:34.024 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:34.034 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:34.034 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:34.034 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:34.034 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:34.044 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:40:34.044 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:40:34.044 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:34.094 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:34.394 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:34.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:34.394 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:34.394 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:34.434 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:34.434 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:34.434 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:40:34.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:40:34.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:34.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:34.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:40:34.534 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.027603,
17-03-18 02:40:34.534 -07 000000430 INF: Autofocus start
17-03-18 02:40:34.534 -07 000000430 INF: MeasureProfile start
17-03-18 02:40:34.544 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:34.544 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:34.544 -07 000000430 INF: MeasureProfile done
17-03-18 02:40:34.544 -07 000000430 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:40:34.544 -07 000000430 INF: Autofocus finished
17-03-18 02:40:34.554 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:40:34.574 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:34.774 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:34.774 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:40:34.774 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.136679396124059. ----------
17-03-18 02:40:34.774 -07 000000610 INF: Cycle	102	Tile	12	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:34.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28380, sync = True, waitForSettling = True)
17-03-18 02:40:34.784 -07 000000610 INF: Z Motor: Moving to -0.129915 mm, started at -0.136679 mm, distance = 6.76 um
17-03-18 02:40:34.784 -07 000000610 INF: FPGA: Xmit ZDACW 28380\n [Z Motor]
17-03-18 02:40:34.784 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:40:34.794 -07 000000610 INF: FPGA: 'ZDACW 28380' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:34.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:34.794 -07 000000512 INF: FPGA: Recv ZDACR 28380
17-03-18 02:40:34.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:34.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:34.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:34.954 -07 000000591 INF: FPGA: Recv ZSGSRD 29508
17-03-18 02:40:34.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:34.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:34.964 -07 000000502 INF: FPGA: Recv ZSGSRD 29515
17-03-18 02:40:34.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:34.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:34.974 -07 000000569 INF: FPGA: Recv ZSGSRD 29516
17-03-18 02:40:34.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:34.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:34.984 -07 000000626 INF: FPGA: Recv ZSGSRD 29512
17-03-18 02:40:34.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:34.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:34.994 -07 000000618 INF: FPGA: Recv ZSGSRD 29514
17-03-18 02:40:35.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:35.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:35.004 -07 000000629 INF: FPGA: Recv ZSGSRD 29512
17-03-18 02:40:35.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:35.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:35.014 -07 000000455 INF: FPGA: Recv ZSGSRD 29509
17-03-18 02:40:35.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:35.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:35.024 -07 000000444 INF: FPGA: Recv ZSGSRD 29511
17-03-18 02:40:35.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:35.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:35.034 -07 000000591 INF: FPGA: Recv ZSGSRD 29510
17-03-18 02:40:35.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:35.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:35.044 -07 000000462 INF: FPGA: Recv ZSGSRD 29516
17-03-18 02:40:35.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:35.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:35.054 -07 000000430 INF: FPGA: Recv ZPIEZORD 25005
17-03-18 02:40:35.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:35.064 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.9 V.
17-03-18 02:40:35.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29512 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29512 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29508 (-129.1 uncal um), Max = 29516 (-129.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:40:35.064 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29512, posNoise = 4, negNoise = 4
17-03-18 02:40:35.064 -07 000000610 INF: Z Motor: After move to -0.129915, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:35.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:40:35.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:35.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:35.064 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:35.064 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:35.064 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:35.064 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:35.064 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:35.064 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:35.064 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:35.064 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:35.064 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:35.064 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:35.074 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:35.074 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:35.074 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:40:35.074 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:35.074 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:40:35.074 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:40:35.074 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:40:35.074 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:40:35.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28557 150\n [Camera]
17-03-18 02:40:35.284 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:35.674 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:35.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:35.674 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:35.684 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:35.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:35.684 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:35.684 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:35.684 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:40:35.684 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:35.684 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:40:35.874 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28557 782
17-03-18 02:40:36.024 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:36.064 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:40:36.064 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:40:36.064 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:36.064 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:40:36.064 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:40:36.064 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:36.074 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:36.074 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:36.074 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:40:36.074 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:40:36.214 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:36.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:36.214 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:36.214 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:36.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:36.214 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:36.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:40:36.214 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:36.214 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:36.214 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:40:36.404 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:40:36.404 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:36.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28557 150' command took 2 ms to send, 1315 ms to get response, and 1324 ms overall
17-03-18 02:40:36.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:36.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.129914700738784. ------
17-03-18 02:40:36.414 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:36.414 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13639 mm
17-03-18 02:40:36.414 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:36.414 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:40:36.414 -07 000000461 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-18 02:40:36.414 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:36.414 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29794, sync = True, waitForSettling = False)
17-03-18 02:40:36.414 -07 000000462 INF: Z Motor: Moving to -0.136388 mm, started at -0.129915 mm, distance = -6.47 um
17-03-18 02:40:36.424 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:36.424 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:36.424 -07 000000576 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:40:36.434 -07 000000462 INF: FPGA: Xmit ZDACW 29794\n [Z Motor]
17-03-18 02:40:36.434 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:40:36.434 -07 000000461 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:36.434 -07 000000461 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:36.434 -07 000000461 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:40:36.434 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:40:36.444 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:36.444 -07 000000462 INF: FPGA: 'ZDACW 29794' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:40:36.454 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:36.464 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:36.464 -07 000000569 INF: FPGA: Recv ZDACR 29794
17-03-18 02:40:36.474 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:40:36.474 -07 000000462 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 02:40:36.504 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:36.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:36.604 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:40:36.604 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:40:36.604 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:36.614 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:40:36.614 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:36.614 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:40:36.614 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:36.614 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:36.614 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:40:36.614 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:40:36.644 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:36.644 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:40:36.824 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:40:36.824 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:40:36.874 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:36.874 -07 000000502 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:40:36.884 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:40:36.884 -07 000000461 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:36.884 -07 000000461 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:40:36.884 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 02:40:37.834 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:37.834 -07 000000455 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:40:37.844 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:37.844 -07 000000461 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:37.864 -07 000000461 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:37.864 -07 000000461 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:40:37.864 -07 000000461 INF: Y Motor: Moved to 69.8638 after 1455 ms (table move)
17-03-18 02:40:37.874 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136388 mm (DAC = 29794)
17-03-18 02:40:37.874 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.874 -07 000000606 INF: FPGA: Recv ZSGSRD 30527
17-03-18 02:40:37.884 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:37.884 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.884 -07 000000455 INF: FPGA: Recv ZSGSRD 30527
17-03-18 02:40:37.894 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.894 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.894 -07 000000629 INF: FPGA: Recv ZSGSRD 30518
17-03-18 02:40:37.904 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.904 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.904 -07 000000430 INF: FPGA: Recv ZSGSRD 30517
17-03-18 02:40:37.914 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.914 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.914 -07 000000626 INF: FPGA: Recv ZSGSRD 30524
17-03-18 02:40:37.924 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.924 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.924 -07 000000606 INF: FPGA: Recv ZSGSRD 30519
17-03-18 02:40:37.934 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.934 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.934 -07 000000455 INF: FPGA: Recv ZSGSRD 30512
17-03-18 02:40:37.944 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.944 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.944 -07 000000629 INF: FPGA: Recv ZSGSRD 30518
17-03-18 02:40:37.954 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.954 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.954 -07 000000444 INF: FPGA: Recv ZSGSRD 30520
17-03-18 02:40:37.964 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.964 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:37.964 -07 000000626 INF: FPGA: Recv ZSGSRD 30521
17-03-18 02:40:37.974 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.974 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:37.974 -07 000000579 INF: FPGA: Recv ZPIEZORD 26321
17-03-18 02:40:37.984 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:37.984 -07 000000501 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.546 V. Piezo Error = -9.2 V.
17-03-18 02:40:37.984 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30520 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30520 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30512 (-135.5 uncal um), Max = 30527 (-135.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:40:37.984 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30520, posNoise = 7, negNoise = 8
17-03-18 02:40:37.984 -07 000000501 INF: Z Motor: After move to -0.136388, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:37.984 -07 000000501 INF: Z Motor: Settle wait time = 1459 ms, measure time = 107 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:40:37.984 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:38.034 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:40:38.034 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:38.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:38.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:38.034 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:38.034 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:38.034 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:38.034 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:38.034 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:38.034 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:38.044 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:38.044 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:38.054 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:40:38.054 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:40:38.054 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:38.104 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:38.404 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:38.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:38.404 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:38.404 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:40:38.444 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:38.444 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:38.444 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:40:38.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 02:40:38.524 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:38.524 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:40:38.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-18 02:40:38.544 -07 000000579 INF: Autofocus start
17-03-18 02:40:38.544 -07 000000579 INF: MeasureProfile start
17-03-18 02:40:38.544 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:38.544 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:38.554 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:38.554 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:38.554 -07 000000579 INF: MeasureProfile done
17-03-18 02:40:38.554 -07 000000579 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:40:38.554 -07 000000579 INF: Autofocus finished
17-03-18 02:40:38.754 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:38.754 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:38.754 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136390306577679. ----------
17-03-18 02:40:38.754 -07 000000610 INF: Cycle	102	Tile	13	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:38.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28289, sync = True, waitForSettling = True)
17-03-18 02:40:38.764 -07 000000610 INF: Z Motor: Moving to -0.129499 mm, started at -0.136390 mm, distance = 6.89 um
17-03-18 02:40:38.764 -07 000000610 INF: FPGA: Xmit ZDACW 28289\n [Z Motor]
17-03-18 02:40:38.764 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:40:38.774 -07 000000610 INF: FPGA: 'ZDACW 28289' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:38.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:38.774 -07 000000561 INF: FPGA: Recv ZDACR 28289
17-03-18 02:40:38.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:38.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:38.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:38.934 -07 000000590 INF: FPGA: Recv ZSGSRD 29446
17-03-18 02:40:38.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:38.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:38.944 -07 000000444 INF: FPGA: Recv ZSGSRD 29445
17-03-18 02:40:38.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:38.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:38.954 -07 000000629 INF: FPGA: Recv ZSGSRD 29449
17-03-18 02:40:38.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:38.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:38.964 -07 000000576 INF: FPGA: Recv ZSGSRD 29443
17-03-18 02:40:38.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:38.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:38.974 -07 000000461 INF: FPGA: Recv ZSGSRD 29454
17-03-18 02:40:38.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:38.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:38.984 -07 000000561 INF: FPGA: Recv ZSGSRD 29452
17-03-18 02:40:38.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:38.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:38.994 -07 000000467 INF: FPGA: Recv ZSGSRD 29444
17-03-18 02:40:39.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:39.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:39.004 -07 000000618 INF: FPGA: Recv ZSGSRD 29443
17-03-18 02:40:39.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:39.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:39.014 -07 000000606 INF: FPGA: Recv ZSGSRD 29450
17-03-18 02:40:39.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:39.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:39.024 -07 000000424 INF: FPGA: Recv ZSGSRD 29448
17-03-18 02:40:39.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:39.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:39.034 -07 000000462 INF: FPGA: Recv ZPIEZORD 24934
17-03-18 02:40:39.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:39.044 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.9 V.
17-03-18 02:40:39.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29447 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29447 (-128.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29443 (-128.7 uncal um), Max = 29454 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:40:39.044 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29447, posNoise = 7, negNoise = 4
17-03-18 02:40:39.044 -07 000000610 INF: Z Motor: After move to -0.129499, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:39.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:40:39.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:39.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:39.044 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:39.044 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:39.044 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:39.044 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:39.044 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:39.044 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:39.044 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:39.044 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:39.044 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:39.044 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:39.044 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:39.044 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:39.054 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:40:39.054 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:39.064 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:40:39.064 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:40:39.064 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:40:39.064 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:40:39.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28466 150\n [Camera]
17-03-18 02:40:39.264 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:39.664 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:39.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:39.664 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:39.664 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:39.664 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:40:39.664 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:39.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:39.664 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:39.664 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:39.664 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:40:39.854 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28466 782
17-03-18 02:40:39.914 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.015368,
17-03-18 02:40:40.004 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:40.044 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:40:40.044 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:40:40.044 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:40.044 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:40:40.044 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:40:40.044 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:40.044 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:40.054 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:40:40.054 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:40.054 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:40:40.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:40:40.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:40:40.204 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:40.204 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:40.204 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:40:40.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:40:40.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:40:40.204 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:40.204 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:40.204 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:40:40.394 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:40:40.394 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:40.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28466 150' command took 2 ms to send, 1318 ms to get response, and 1330 ms overall
17-03-18 02:40:40.404 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:40.404 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.12949712694957. ------
17-03-18 02:40:40.404 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13562 mm
17-03-18 02:40:40.404 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:40.404 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:40.404 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:40:40.404 -07 000000629 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-18 02:40:40.404 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:40.404 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29626, sync = True, waitForSettling = False)
17-03-18 02:40:40.404 -07 000000561 INF: Z Motor: Moving to -0.135619 mm, started at -0.129497 mm, distance = -6.12 um
17-03-18 02:40:40.414 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:40:40.414 -07 000000561 INF: FPGA: Xmit ZDACW 29626\n [Z Motor]
17-03-18 02:40:40.414 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:40:40.424 -07 000000561 INF: FPGA: 'ZDACW 29626' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:40.424 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:40.424 -07 000000467 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:40:40.434 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:40.434 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:40:40.434 -07 000000629 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:40.434 -07 000000629 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:40.434 -07 000000629 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:40:40.554 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:40.564 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:40.564 -07 000000590 INF: FPGA: Recv ZDACR 29626
17-03-18 02:40:40.564 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 1 ms to get response, and 141 ms overall
17-03-18 02:40:40.564 -07 000000561 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-18 02:40:40.594 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:40:40.594 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:40:40.594 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:40.604 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:40:40.604 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:40:40.604 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:40.604 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:40:40.604 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:40:40.604 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:40.614 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:40:40.634 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:40.634 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 74 ms to get response, and 222 ms overall
17-03-18 02:40:40.934 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:40:40.934 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-18 02:40:40.984 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:40.984 -07 000000462 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:40:40.994 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:40:40.994 -07 000000629 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:40.994 -07 000000629 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:40:40.994 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 507 ms, distance = 0.839 mm, average velocity = 1.655 mm/sec
17-03-18 02:40:41.504 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:41.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:41.944 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:41.944 -07 000000626 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:40:41.954 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:41.954 -07 000000629 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:41.974 -07 000000629 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:41.974 -07 000000629 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:40:41.974 -07 000000629 INF: Y Motor: Moved to 70.6885 after 1570 ms (table move)
17-03-18 02:40:41.984 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135619 mm (DAC = 29626)
17-03-18 02:40:41.984 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:41.984 -07 000000444 INF: FPGA: Recv ZSGSRD 30406
17-03-18 02:40:41.994 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:41.994 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:41.994 -07 000000502 INF: FPGA: Recv ZSGSRD 30402
17-03-18 02:40:42.004 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.004 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:42.004 -07 000000424 INF: FPGA: Recv ZSGSRD 30401
17-03-18 02:40:42.014 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.014 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:42.014 -07 000000455 INF: FPGA: Recv ZSGSRD 30404
17-03-18 02:40:42.024 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.024 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:42.024 -07 000000512 INF: FPGA: Recv ZSGSRD 30402
17-03-18 02:40:42.034 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.034 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:42.034 -07 000000462 INF: FPGA: Recv ZSGSRD 30399
17-03-18 02:40:42.044 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.044 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:42.044 -07 000000591 INF: FPGA: Recv ZSGSRD 30405
17-03-18 02:40:42.054 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.054 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:42.054 -07 000000626 INF: FPGA: Recv ZSGSRD 30392
17-03-18 02:40:42.064 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.064 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:42.064 -07 000000444 INF: FPGA: Recv ZSGSRD 30400
17-03-18 02:40:42.074 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.074 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:42.074 -07 000000579 INF: FPGA: Recv ZSGSRD 30403
17-03-18 02:40:42.084 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.084 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:42.084 -07 000000590 INF: FPGA: Recv ZPIEZORD 26229
17-03-18 02:40:42.094 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.094 -07 000000430 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.521 V. Piezo Error = -9.2 V.
17-03-18 02:40:42.094 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30401 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30402 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30392 (-134.8 uncal um), Max = 30406 (-134.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:40:42.094 -07 000000430 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30401, posNoise = 5, negNoise = 9
17-03-18 02:40:42.094 -07 000000430 INF: Z Motor: After move to -0.135619, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:42.094 -07 000000430 INF: Z Motor: Settle wait time = 1572 ms, measure time = 109 ms (allowed 150 ms), total time = 1681 ms
17-03-18 02:40:42.094 -07 000000430 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:42.144 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1734 ms
17-03-18 02:40:42.144 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:42.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:42.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:42.144 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:42.144 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:42.144 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:42.154 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:42.154 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:42.154 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:42.154 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:42.154 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:42.164 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:40:42.164 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:40:42.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:42.214 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:42.514 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:42.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:42.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:42.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:42.544 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:42.554 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:42.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:40:42.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:40:42.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:42.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:42.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:40:42.654 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:42.654 -07 000000606 INF: Autofocus start
17-03-18 02:40:42.654 -07 000000606 INF: MeasureProfile start
17-03-18 02:40:42.654 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:42.664 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:42.664 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:42.674 -07 000000606 INF: MeasureProfile done
17-03-18 02:40:42.674 -07 000000606 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:40:42.674 -07 000000606 INF: Autofocus finished
17-03-18 02:40:42.864 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:42.864 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:42.864 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.13562582533281. ----------
17-03-18 02:40:42.864 -07 000000610 INF: Cycle	102	Tile	14	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:42.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28121, sync = True, waitForSettling = True)
17-03-18 02:40:42.874 -07 000000610 INF: Z Motor: Moving to -0.128730 mm, started at -0.135626 mm, distance = 6.90 um
17-03-18 02:40:42.874 -07 000000610 INF: FPGA: Xmit ZDACW 28121\n [Z Motor]
17-03-18 02:40:42.874 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:40:42.884 -07 000000610 INF: FPGA: 'ZDACW 28121' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:42.884 -07 000000618 INF: FPGA: Recv ZDACR 28121
17-03-18 02:40:42.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:42.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:43.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.044 -07 000000561 INF: FPGA: Recv ZSGSRD 29330
17-03-18 02:40:43.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:43.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.054 -07 000000444 INF: FPGA: Recv ZSGSRD 29326
17-03-18 02:40:43.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:43.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.064 -07 000000590 INF: FPGA: Recv ZSGSRD 29328
17-03-18 02:40:43.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:43.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.074 -07 000000462 INF: FPGA: Recv ZSGSRD 29328
17-03-18 02:40:43.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:40:43.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.084 -07 000000424 INF: FPGA: Recv ZSGSRD 29333
17-03-18 02:40:43.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:43.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.094 -07 000000467 INF: FPGA: Recv ZSGSRD 29328
17-03-18 02:40:43.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:43.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.104 -07 000000606 INF: FPGA: Recv ZSGSRD 29324
17-03-18 02:40:43.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:43.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.114 -07 000000579 INF: FPGA: Recv ZSGSRD 29323
17-03-18 02:40:43.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:43.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.124 -07 000000461 INF: FPGA: Recv ZSGSRD 29334
17-03-18 02:40:43.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:43.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:43.134 -07 000000591 INF: FPGA: Recv ZSGSRD 29329
17-03-18 02:40:43.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:43.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:43.144 -07 000000590 INF: FPGA: Recv ZPIEZORD 24809
17-03-18 02:40:43.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:43.154 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.9 V.
17-03-18 02:40:43.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29328 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29328 (-128.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29323 (-127.9 uncal um), Max = 29334 (-128.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:40:43.154 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29328, posNoise = 6, negNoise = 5
17-03-18 02:40:43.154 -07 000000610 INF: Z Motor: After move to -0.128730, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:43.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:40:43.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:43.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:43.154 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:43.154 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:43.154 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:43.154 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:43.154 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:43.154 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:43.154 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:40:43.154 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:43.154 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:43.154 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:43.154 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:43.154 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:43.154 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:40:43.154 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:43.164 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:40:43.164 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:40:43.164 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:40:43.174 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:40:43.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28298 150\n [Camera]
17-03-18 02:40:43.374 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:43.774 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:43.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:43.774 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:43.774 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:43.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:43.774 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:43.774 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:43.774 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:40:43.784 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:43.784 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:40:43.964 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28298 782
17-03-18 02:40:44.114 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:44.164 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:40:44.164 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:40:44.164 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:44.164 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:40:44.164 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:40:44.164 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:44.164 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:44.164 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:44.164 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:40:44.174 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:40:44.304 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1125
17-03-18 02:40:44.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1125
17-03-18 02:40:44.304 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:44.314 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1125
17-03-18 02:40:44.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1125
17-03-18 02:40:44.314 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:44.324 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:44.324 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:40:44.324 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:44.324 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:40:44.504 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:40:44.504 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:44.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28298 150' command took 2 ms to send, 1322 ms to get response, and 1326 ms overall
17-03-18 02:40:44.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:44.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.1287326457047. ------
17-03-18 02:40:44.624 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13544 mm
17-03-18 02:40:44.624 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:44.624 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29586, sync = True, waitForSettling = False)
17-03-18 02:40:44.624 -07 000000502 INF: Z Motor: Moving to -0.135436 mm, started at -0.128733 mm, distance = -6.70 um
17-03-18 02:40:44.624 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:40:44.624 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:40:44.634 -07 000000502 INF: FPGA: Xmit ZDACW 29586\n [Z Motor]
17-03-18 02:40:44.634 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:40:44.644 -07 000000502 INF: FPGA: 'ZDACW 29586' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:40:44.644 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:44.644 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:44.654 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:40:44.654 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:44.654 -07 000000569 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:40:44.664 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:44.664 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 02:40:44.664 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:44.664 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:44.664 -07 000000501 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:40:44.664 -07 000000424 INF: FPGA: Recv ZDACR 29586
17-03-18 02:40:44.674 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:44.674 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:40:44.674 -07 000000502 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:40:44.684 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:44.714 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:40:44.714 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:40:44.714 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:44.714 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:40:44.714 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:40:44.714 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:44.714 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:44.714 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:40:44.714 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:44.724 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:40:44.874 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:44.874 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:40:45.054 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:40:45.054 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 02:40:45.104 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:45.104 -07 000000467 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:40:45.114 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:45.114 -07 000000501 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:45.114 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:40:45.114 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:40:45.274 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.994908,
17-03-18 02:40:46.064 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:46.064 -07 000000444 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:40:46.074 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.074 -07 000000501 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:46.094 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:46.094 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:40:46.094 -07 000000501 INF: Y Motor: Moved to 71.5190 after 1472 ms (table move)
17-03-18 02:40:46.104 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135436 mm (DAC = 29586)
17-03-18 02:40:46.104 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.104 -07 000000618 INF: FPGA: Recv ZSGSRD 30379
17-03-18 02:40:46.114 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:46.114 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.114 -07 000000462 INF: FPGA: Recv ZSGSRD 30369
17-03-18 02:40:46.124 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.124 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.124 -07 000000502 INF: FPGA: Recv ZSGSRD 30382
17-03-18 02:40:46.134 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.134 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.134 -07 000000569 INF: FPGA: Recv ZSGSRD 30373
17-03-18 02:40:46.144 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.144 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.144 -07 000000501 INF: FPGA: Recv ZSGSRD 30375
17-03-18 02:40:46.154 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.154 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.154 -07 000000579 INF: FPGA: Recv ZSGSRD 30376
17-03-18 02:40:46.164 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.164 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.164 -07 000000606 INF: FPGA: Recv ZSGSRD 30364
17-03-18 02:40:46.174 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.174 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.174 -07 000000502 INF: FPGA: Recv ZSGSRD 30373
17-03-18 02:40:46.184 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.184 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.184 -07 000000424 INF: FPGA: Recv ZSGSRD 30367
17-03-18 02:40:46.194 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.194 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:46.194 -07 000000455 INF: FPGA: Recv ZSGSRD 30374
17-03-18 02:40:46.204 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.204 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:46.204 -07 000000626 INF: FPGA: Recv ZPIEZORD 26246
17-03-18 02:40:46.214 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.214 -07 000000430 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.515 V. Piezo Error = -9.1 V.
17-03-18 02:40:46.214 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30373 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30374 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30364 (-134.6 uncal um), Max = 30382 (-134.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:40:46.214 -07 000000430 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30373, posNoise = 9, negNoise = 9
17-03-18 02:40:46.214 -07 000000430 INF: Z Motor: After move to -0.135436, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:46.214 -07 000000430 INF: Z Motor: Settle wait time = 1476 ms, measure time = 108 ms (allowed 150 ms), total time = 1584 ms
17-03-18 02:40:46.214 -07 000000430 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:46.264 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 02:40:46.264 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:46.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:46.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:46.264 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:46.264 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:46.264 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:46.264 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:46.264 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:40:46.264 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:46.274 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:46.274 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:46.274 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:40:46.274 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:40:46.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:46.324 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:46.504 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:46.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:46.624 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:46.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:46.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:46.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:46.664 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:46.664 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:46.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:40:46.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:40:46.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:46.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:46.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:40:46.764 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:46.764 -07 000000561 INF: Autofocus start
17-03-18 02:40:46.764 -07 000000561 INF: MeasureProfile start
17-03-18 02:40:46.764 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:46.774 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:46.774 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:46.774 -07 000000561 INF: MeasureProfile done
17-03-18 02:40:46.774 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:40:46.774 -07 000000561 INF: Autofocus finished
17-03-18 02:40:46.974 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:46.974 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:46.974 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135445947392841. ----------
17-03-18 02:40:46.974 -07 000000610 INF: Cycle	102	Tile	15	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:46.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28093, sync = True, waitForSettling = True)
17-03-18 02:40:46.984 -07 000000610 INF: Z Motor: Moving to -0.128602 mm, started at -0.135446 mm, distance = 6.84 um
17-03-18 02:40:46.984 -07 000000610 INF: FPGA: Xmit ZDACW 28093\n [Z Motor]
17-03-18 02:40:46.984 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:40:46.994 -07 000000610 INF: FPGA: 'ZDACW 28093' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:46.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:46.994 -07 000000462 INF: FPGA: Recv ZDACR 28093
17-03-18 02:40:47.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:47.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.154 -07 000000618 INF: FPGA: Recv ZSGSRD 29309
17-03-18 02:40:47.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:47.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.164 -07 000000626 INF: FPGA: Recv ZSGSRD 29310
17-03-18 02:40:47.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.174 -07 000000591 INF: FPGA: Recv ZSGSRD 29312
17-03-18 02:40:47.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.184 -07 000000444 INF: FPGA: Recv ZSGSRD 29303
17-03-18 02:40:47.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.194 -07 000000467 INF: FPGA: Recv ZSGSRD 29313
17-03-18 02:40:47.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:47.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.204 -07 000000629 INF: FPGA: Recv ZSGSRD 29313
17-03-18 02:40:47.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.214 -07 000000606 INF: FPGA: Recv ZSGSRD 29310
17-03-18 02:40:47.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.224 -07 000000461 INF: FPGA: Recv ZSGSRD 29304
17-03-18 02:40:47.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.234 -07 000000618 INF: FPGA: Recv ZSGSRD 29312
17-03-18 02:40:47.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:47.244 -07 000000501 INF: FPGA: Recv ZSGSRD 29304
17-03-18 02:40:47.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:47.254 -07 000000424 INF: FPGA: Recv ZPIEZORD 24836
17-03-18 02:40:47.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:47.264 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.8 V.
17-03-18 02:40:47.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29309 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29310 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29303 (-127.8 uncal um), Max = 29313 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:47.264 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29309, posNoise = 4, negNoise = 6
17-03-18 02:40:47.264 -07 000000610 INF: Z Motor: After move to -0.128602, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:47.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:40:47.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:47.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:47.264 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:47.264 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:47.264 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:47.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:47.264 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:47.264 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:47.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:47.264 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:47.264 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:47.264 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:47.274 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:47.274 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:47.274 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:40:47.274 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:47.274 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:40:47.274 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:40:47.284 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:40:47.284 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:40:47.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28270 150\n [Camera]
17-03-18 02:40:47.484 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:47.884 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:47.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:47.884 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:47.884 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:47.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:47.884 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:47.884 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:47.884 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:40:47.884 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:47.884 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:40:48.074 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28270 782
17-03-18 02:40:48.224 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:48.264 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:40:48.264 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:40:48.264 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:48.264 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:48.264 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:40:48.264 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:40:48.264 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:48.274 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:48.274 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:40:48.274 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:40:48.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:48.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:48.414 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:48.414 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:48.414 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:40:48.414 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:48.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:48.414 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:48.414 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:48.414 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:40:48.604 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:40:48.604 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:48.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28270 150' command took 2 ms to send, 1319 ms to get response, and 1325 ms overall
17-03-18 02:40:48.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:48.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128610585674007. ------
17-03-18 02:40:48.614 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:48.614 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13491 mm
17-03-18 02:40:48.614 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:48.614 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:40:48.614 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:40:48.614 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:48.624 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:40:48.624 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:48.624 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29472, sync = True, waitForSettling = False)
17-03-18 02:40:48.624 -07 000000455 INF: Z Motor: Moving to -0.134914 mm, started at -0.128611 mm, distance = -6.30 um
17-03-18 02:40:48.624 -07 000000501 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:40:48.634 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:48.634 -07 000000626 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:48.634 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:48.634 -07 000000626 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:40:48.634 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:48.644 -07 000000455 INF: FPGA: Xmit ZDACW 29472\n [Z Motor]
17-03-18 02:40:48.644 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:40:48.654 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:48.654 -07 000000455 INF: FPGA: 'ZDACW 29472' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:40:48.664 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:48.664 -07 000000461 INF: FPGA: Recv ZDACR 29472
17-03-18 02:40:48.674 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:40:48.674 -07 000000455 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:40:48.814 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:40:48.814 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:40:48.814 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:48.814 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:40:48.814 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:40:48.814 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:48.824 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:48.824 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:40:48.824 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:40:48.834 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:40:48.834 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:48.834 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 02:40:49.024 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:40:49.024 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:40:49.074 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:49.074 -07 000000461 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:40:49.084 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:49.084 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:49.084 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:40:49.084 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 02:40:50.034 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:50.034 -07 000000561 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:40:50.044 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:50.044 -07 000000626 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:50.064 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:50.064 -07 000000626 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:40:50.064 -07 000000626 INF: Y Motor: Moved to 72.3501 after 1449 ms (table move)
17-03-18 02:40:50.074 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134914 mm (DAC = 29472)
17-03-18 02:40:50.074 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.074 -07 000000629 INF: FPGA: Recv ZSGSRD 30297
17-03-18 02:40:50.084 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:50.084 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.084 -07 000000576 INF: FPGA: Recv ZSGSRD 30292
17-03-18 02:40:50.094 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.094 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.094 -07 000000561 INF: FPGA: Recv ZSGSRD 30287
17-03-18 02:40:50.104 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.104 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.104 -07 000000502 INF: FPGA: Recv ZSGSRD 30289
17-03-18 02:40:50.114 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.114 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.114 -07 000000626 INF: FPGA: Recv ZSGSRD 30291
17-03-18 02:40:50.124 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.124 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.124 -07 000000569 INF: FPGA: Recv ZSGSRD 30290
17-03-18 02:40:50.134 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.134 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.134 -07 000000424 INF: FPGA: Recv ZSGSRD 30297
17-03-18 02:40:50.144 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.144 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.144 -07 000000467 INF: FPGA: Recv ZSGSRD 30284
17-03-18 02:40:50.154 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.154 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.154 -07 000000455 INF: FPGA: Recv ZSGSRD 30286
17-03-18 02:40:50.164 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.164 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:50.164 -07 000000606 INF: FPGA: Recv ZSGSRD 30291
17-03-18 02:40:50.174 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.174 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:50.174 -07 000000430 INF: FPGA: Recv ZPIEZORD 26121
17-03-18 02:40:50.184 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.184 -07 000000618 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.2 V.
17-03-18 02:40:50.184 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30290 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30290 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30284 (-134.1 uncal um), Max = 30297 (-134.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:50.184 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30290, posNoise = 7, negNoise = 6
17-03-18 02:40:50.184 -07 000000618 INF: Z Motor: After move to -0.134914, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:50.184 -07 000000618 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:40:50.184 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:50.234 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:40:50.234 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:50.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:50.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:50.234 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:50.234 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:50.234 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:50.234 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:50.244 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:40:50.244 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:50.244 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:50.244 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:50.244 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:40:50.254 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:40:50.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:50.294 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:50.594 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:50.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:50.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:50.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:40:50.634 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.990831,
17-03-18 02:40:50.634 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:50.634 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:50.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:40:50.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:40:50.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:50.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:40:50.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:40:50.734 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:50.734 -07 000000618 INF: Autofocus start
17-03-18 02:40:50.734 -07 000000618 INF: MeasureProfile start
17-03-18 02:40:50.734 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:50.744 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:50.744 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:50.744 -07 000000618 INF: MeasureProfile done
17-03-18 02:40:50.744 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:40:50.744 -07 000000618 INF: Autofocus finished
17-03-18 02:40:50.944 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:50.944 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:50.944 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.134912737785074. ----------
17-03-18 02:40:50.944 -07 000000610 INF: Cycle	102	Tile	16	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:50.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27979, sync = True, waitForSettling = True)
17-03-18 02:40:50.954 -07 000000610 INF: Z Motor: Moving to -0.128080 mm, started at -0.134913 mm, distance = 6.83 um
17-03-18 02:40:50.954 -07 000000610 INF: FPGA: Xmit ZDACW 27979\n [Z Motor]
17-03-18 02:40:50.954 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:40:50.964 -07 000000610 INF: FPGA: 'ZDACW 27979' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:50.964 -07 000000561 INF: FPGA: Recv ZDACR 27979
17-03-18 02:40:50.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:50.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:51.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.124 -07 000000501 INF: FPGA: Recv ZSGSRD 29230
17-03-18 02:40:51.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:51.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.134 -07 000000626 INF: FPGA: Recv ZSGSRD 29231
17-03-18 02:40:51.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:51.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.144 -07 000000512 INF: FPGA: Recv ZSGSRD 29226
17-03-18 02:40:51.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:51.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.154 -07 000000591 INF: FPGA: Recv ZSGSRD 29219
17-03-18 02:40:51.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:51.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.164 -07 000000461 INF: FPGA: Recv ZSGSRD 29228
17-03-18 02:40:51.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:51.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.174 -07 000000467 INF: FPGA: Recv ZSGSRD 29235
17-03-18 02:40:51.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:51.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.184 -07 000000569 INF: FPGA: Recv ZSGSRD 29229
17-03-18 02:40:51.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:51.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.194 -07 000000629 INF: FPGA: Recv ZSGSRD 29229
17-03-18 02:40:51.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:51.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.204 -07 000000462 INF: FPGA: Recv ZSGSRD 29231
17-03-18 02:40:51.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:51.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:51.214 -07 000000606 INF: FPGA: Recv ZSGSRD 29229
17-03-18 02:40:51.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:51.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:51.224 -07 000000444 INF: FPGA: Recv ZPIEZORD 24736
17-03-18 02:40:51.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:51.234 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.9 V.
17-03-18 02:40:51.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29229 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29229 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29219 (-127.3 uncal um), Max = 29235 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:40:51.234 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29229, posNoise = 6, negNoise = 10
17-03-18 02:40:51.234 -07 000000610 INF: Z Motor: After move to -0.128080, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:51.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:40:51.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:51.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:51.234 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:51.234 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:51.234 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:51.234 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:51.234 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:51.234 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:51.234 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:40:51.234 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:51.234 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:51.234 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:51.234 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:40:51.234 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:51.234 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:51.234 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:51.254 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:40:51.254 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:40:51.254 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:40:51.254 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:40:51.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28156 150\n [Camera]
17-03-18 02:40:51.454 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:51.504 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:51.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:51.854 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:51.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:51.854 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:51.854 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:51.854 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:40:51.854 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:51.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:51.854 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:51.854 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:51.854 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:40:52.044 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28156 782
17-03-18 02:40:52.194 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:52.234 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:40:52.234 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:40:52.234 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:52.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:40:52.234 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:40:52.234 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:52.244 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:52.244 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:52.244 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:40:52.244 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:40:52.384 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:52.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:52.384 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:52.384 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:52.384 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:40:52.384 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:52.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:52.394 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:52.394 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:52.394 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:40:52.574 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:40:52.574 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:52.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28156 150' command took 2 ms to send, 1318 ms to get response, and 1322 ms overall
17-03-18 02:40:52.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:52.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128096648702666. ------
17-03-18 02:40:52.694 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:52.704 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13469 mm
17-03-18 02:40:52.704 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:52.704 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:40:52.704 -07 000000430 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-18 02:40:52.704 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29424, sync = True, waitForSettling = False)
17-03-18 02:40:52.704 -07 000000576 INF: Z Motor: Moving to -0.134694 mm, started at -0.128097 mm, distance = -6.60 um
17-03-18 02:40:52.704 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:52.714 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:52.714 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:52.714 -07 000000629 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:40:52.724 -07 000000576 INF: FPGA: Xmit ZDACW 29424\n [Z Motor]
17-03-18 02:40:52.724 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:40:52.724 -07 000000430 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:52.724 -07 000000430 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:52.724 -07 000000430 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:40:52.724 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:40:52.734 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:52.734 -07 000000576 INF: FPGA: 'ZDACW 29424' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:40:52.744 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:52.754 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:52.754 -07 000000512 INF: FPGA: Recv ZDACR 29424
17-03-18 02:40:52.764 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:40:52.764 -07 000000576 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 02:40:52.774 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:40:52.784 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:40:52.784 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:52.784 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:40:52.784 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:40:52.784 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:52.784 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:40:52.784 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:40:52.794 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:40:52.794 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:40:52.934 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:52.934 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:40:53.114 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:40:53.114 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:40:53.164 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:53.164 -07 000000629 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:40:53.174 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:40:53.174 -07 000000430 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:53.174 -07 000000430 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:40:53.174 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-18 02:40:54.124 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:54.124 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:40:54.134 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:54.134 -07 000000430 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:54.154 -07 000000430 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:54.154 -07 000000430 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:40:54.154 -07 000000430 INF: Y Motor: Moved to 73.1763 after 1455 ms (table move)
17-03-18 02:40:54.164 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134694 mm (DAC = 29424)
17-03-18 02:40:54.164 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.164 -07 000000606 INF: FPGA: Recv ZSGSRD 30261
17-03-18 02:40:54.174 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:54.174 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.174 -07 000000590 INF: FPGA: Recv ZSGSRD 30248
17-03-18 02:40:54.184 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:54.184 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.184 -07 000000579 INF: FPGA: Recv ZSGSRD 30257
17-03-18 02:40:54.194 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:54.194 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.194 -07 000000591 INF: FPGA: Recv ZSGSRD 30260
17-03-18 02:40:54.204 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:54.204 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.204 -07 000000629 INF: FPGA: Recv ZSGSRD 30264
17-03-18 02:40:54.214 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:54.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.214 -07 000000576 INF: FPGA: Recv ZSGSRD 30256
17-03-18 02:40:54.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:54.224 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.224 -07 000000455 INF: FPGA: Recv ZSGSRD 30254
17-03-18 02:40:54.234 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:54.234 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.234 -07 000000569 INF: FPGA: Recv ZSGSRD 30253
17-03-18 02:40:54.244 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:54.244 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.244 -07 000000591 INF: FPGA: Recv ZSGSRD 30255
17-03-18 02:40:54.254 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:54.254 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:54.254 -07 000000590 INF: FPGA: Recv ZSGSRD 30254
17-03-18 02:40:54.264 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:54.264 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:54.264 -07 000000467 INF: FPGA: Recv ZPIEZORD 26101
17-03-18 02:40:54.274 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:54.274 -07 000000626 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -9.1 V.
17-03-18 02:40:54.274 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30256 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30256 (-133.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30248 (-133.9 uncal um), Max = 30264 (-134.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:40:54.274 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30256, posNoise = 8, negNoise = 8
17-03-18 02:40:54.274 -07 000000626 INF: Z Motor: After move to -0.134694, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:54.274 -07 000000626 INF: Z Motor: Settle wait time = 1459 ms, measure time = 108 ms (allowed 150 ms), total time = 1567 ms
17-03-18 02:40:54.274 -07 000000626 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:54.324 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:40:54.324 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:54.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:54.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:54.324 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:54.324 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:54.324 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:54.324 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:54.324 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:54.324 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:54.334 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:54.334 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:54.344 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:40:54.344 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:40:54.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:54.394 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:54.694 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:54.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:54.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:54.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:54.734 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:54.734 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:54.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:40:54.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:40:54.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:54.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:54.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:40:54.834 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:54.834 -07 000000455 INF: Autofocus start
17-03-18 02:40:54.834 -07 000000455 INF: MeasureProfile start
17-03-18 02:40:54.834 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:54.844 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:40:54.844 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:54.844 -07 000000455 INF: MeasureProfile done
17-03-18 02:40:54.844 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:40:54.844 -07 000000455 INF: Autofocus finished
17-03-18 02:40:55.044 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:55.044 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:55.044 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134694314572255. ----------
17-03-18 02:40:55.044 -07 000000610 INF: Cycle	102	Tile	17	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:55.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27948, sync = True, waitForSettling = True)
17-03-18 02:40:55.054 -07 000000610 INF: Z Motor: Moving to -0.127938 mm, started at -0.134694 mm, distance = 6.76 um
17-03-18 02:40:55.054 -07 000000610 INF: FPGA: Xmit ZDACW 27948\n [Z Motor]
17-03-18 02:40:55.054 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:40:55.064 -07 000000610 INF: FPGA: 'ZDACW 27948' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:40:55.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:55.064 -07 000000629 INF: FPGA: Recv ZDACR 27948
17-03-18 02:40:55.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:55.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29209
17-03-18 02:40:55.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.234 -07 000000629 INF: FPGA: Recv ZSGSRD 29207
17-03-18 02:40:55.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.244 -07 000000576 INF: FPGA: Recv ZSGSRD 29200
17-03-18 02:40:55.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.254 -07 000000430 INF: FPGA: Recv ZSGSRD 29207
17-03-18 02:40:55.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.264 -07 000000462 INF: FPGA: Recv ZSGSRD 29206
17-03-18 02:40:55.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.274 -07 000000590 INF: FPGA: Recv ZSGSRD 29204
17-03-18 02:40:55.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.284 -07 000000455 INF: FPGA: Recv ZSGSRD 29210
17-03-18 02:40:55.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.294 -07 000000591 INF: FPGA: Recv ZSGSRD 29202
17-03-18 02:40:55.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.304 -07 000000561 INF: FPGA: Recv ZSGSRD 29206
17-03-18 02:40:55.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:55.314 -07 000000579 INF: FPGA: Recv ZSGSRD 29208
17-03-18 02:40:55.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:55.324 -07 000000618 INF: FPGA: Recv ZPIEZORD 24724
17-03-18 02:40:55.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:55.334 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.265 V. Piezo Error = -9.8 V.
17-03-18 02:40:55.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29206 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29206 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29200 (-127.1 uncal um), Max = 29210 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:55.334 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29206, posNoise = 4, negNoise = 6
17-03-18 02:40:55.334 -07 000000610 INF: Z Motor: After move to -0.127938, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:55.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:40:55.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:55.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:55.334 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:55.334 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:55.334 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:55.334 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:55.334 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:55.334 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:55.334 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:55.334 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:55.334 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:55.334 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:55.344 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:55.344 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:55.344 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:40:55.344 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:55.344 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:40:55.344 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:40:55.354 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:40:55.354 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:40:55.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28125 150\n [Camera]
17-03-18 02:40:55.554 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:40:55.954 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:40:55.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:40:55.954 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:40:55.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:40:55.954 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:55.954 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:55.964 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:55.964 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:40:55.964 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:55.964 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:40:56.014 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 3.978563,
17-03-18 02:40:56.144 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28125 782
17-03-18 02:40:56.294 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:40:56.344 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:40:56.344 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:40:56.344 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:56.344 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:40:56.344 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:40:56.344 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:56.344 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:56.344 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:40:56.344 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:40:56.354 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:40:56.484 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:40:56.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:40:56.484 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:40:56.484 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:40:56.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:40:56.484 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:40:56.494 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:40:56.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:40:56.494 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:40:56.494 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:40:56.504 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:40:56.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:40:56.674 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:40:56.674 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:40:56.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28125 150' command took 2 ms to send, 1315 ms to get response, and 1322 ms overall
17-03-18 02:40:56.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:40:56.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127948891823406. ------
17-03-18 02:40:56.804 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13432 mm
17-03-18 02:40:56.814 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:40:56.814 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:56.814 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:56.814 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:40:56.814 -07 000000502 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:40:56.814 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 29342, sync = True, waitForSettling = False)
17-03-18 02:40:56.814 -07 000000591 INF: Z Motor: Moving to -0.134319 mm, started at -0.127949 mm, distance = -6.37 um
17-03-18 02:40:56.824 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:56.824 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:56.824 -07 000000579 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:40:56.834 -07 000000591 INF: FPGA: Xmit ZDACW 29342\n [Z Motor]
17-03-18 02:40:56.834 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:40:56.834 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:56.834 -07 000000502 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:40:56.834 -07 000000502 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:40:56.834 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:40:56.844 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:40:56.844 -07 000000591 INF: FPGA: 'ZDACW 29342' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:40:56.854 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:40:56.864 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:56.864 -07 000000569 INF: FPGA: Recv ZDACR 29342
17-03-18 02:40:56.874 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:40:56.874 -07 000000591 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:40:56.884 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:40:56.884 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:40:56.884 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:56.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:40:56.884 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:40:56.884 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:56.894 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:56.894 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:40:56.894 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:40:56.904 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:40:57.044 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:40:57.044 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:40:57.224 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:40:57.224 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:40:57.264 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:57.264 -07 000000501 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:40:57.274 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:40:57.274 -07 000000502 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:57.274 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:40:57.274 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 02:40:58.224 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:40:58.224 -07 000000569 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:40:58.234 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:58.234 -07 000000502 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:40:58.254 -07 000000502 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:40:58.254 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:40:58.254 -07 000000502 INF: Y Motor: Moved to 74.0083 after 1436 ms (table move)
17-03-18 02:40:58.254 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134319 mm (DAC = 29342)
17-03-18 02:40:58.254 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.254 -07 000000569 INF: FPGA: Recv ZSGSRD 30199
17-03-18 02:40:58.264 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:40:58.264 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30195
17-03-18 02:40:58.274 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:58.274 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.274 -07 000000444 INF: FPGA: Recv ZSGSRD 30198
17-03-18 02:40:58.284 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:58.284 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.284 -07 000000501 INF: FPGA: Recv ZSGSRD 30197
17-03-18 02:40:58.294 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:58.294 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.294 -07 000000424 INF: FPGA: Recv ZSGSRD 30199
17-03-18 02:40:58.304 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:58.304 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.304 -07 000000618 INF: FPGA: Recv ZSGSRD 30196
17-03-18 02:40:58.314 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:58.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.314 -07 000000579 INF: FPGA: Recv ZSGSRD 30200
17-03-18 02:40:58.324 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:58.324 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.324 -07 000000591 INF: FPGA: Recv ZSGSRD 30202
17-03-18 02:40:58.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:58.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.334 -07 000000430 INF: FPGA: Recv ZSGSRD 30191
17-03-18 02:40:58.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:58.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:58.344 -07 000000461 INF: FPGA: Recv ZSGSRD 30201
17-03-18 02:40:58.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:58.354 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:58.354 -07 000000590 INF: FPGA: Recv ZPIEZORD 26011
17-03-18 02:40:58.364 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:58.364 -07 000000561 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.477 V. Piezo Error = -9.2 V.
17-03-18 02:40:58.364 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30198 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30198 (-133.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30191 (-133.5 uncal um), Max = 30202 (-133.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:40:58.364 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30198, posNoise = 4, negNoise = 7
17-03-18 02:40:58.364 -07 000000561 INF: Z Motor: After move to -0.134319, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:58.364 -07 000000561 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-18 02:40:58.364 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:40:58.414 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 02:40:58.414 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:40:58.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:58.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:58.414 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:58.414 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:40:58.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:58.414 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:58.414 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:40:58.414 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:40:58.424 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:40:58.424 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:40:58.424 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:40:58.424 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:40:58.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:40:58.474 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:40:58.774 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:40:58.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:40:58.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:40:58.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-18 02:40:58.814 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:40:58.814 -07 000000467 INF: FPGA: Recv CAMSNAP
17-03-18 02:40:58.814 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:40:58.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:40:58.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:40:58.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:40:58.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:40:58.914 -07 000000561 INF: Autofocus start
17-03-18 02:40:58.914 -07 000000561 INF: MeasureProfile start
17-03-18 02:40:58.914 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:40:58.914 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:40:58.924 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:40:58.924 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:40:58.924 -07 000000561 INF: MeasureProfile done
17-03-18 02:40:58.924 -07 000000561 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:40:58.924 -07 000000561 INF: Autofocus finished
17-03-18 02:40:59.124 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:40:59.124 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:40:59.124 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134321710268032. ----------
17-03-18 02:40:59.124 -07 000000610 INF: Cycle	102	Tile	18	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:40:59.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27837, sync = True, waitForSettling = True)
17-03-18 02:40:59.134 -07 000000610 INF: Z Motor: Moving to -0.127430 mm, started at -0.134322 mm, distance = 6.89 um
17-03-18 02:40:59.134 -07 000000610 INF: FPGA: Xmit ZDACW 27837\n [Z Motor]
17-03-18 02:40:59.134 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:40:59.144 -07 000000610 INF: FPGA: 'ZDACW 27837' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:40:59.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:40:59.144 -07 000000579 INF: FPGA: Recv ZDACR 27837
17-03-18 02:40:59.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:40:59.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.304 -07 000000455 INF: FPGA: Recv ZSGSRD 29120
17-03-18 02:40:59.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:40:59.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.314 -07 000000502 INF: FPGA: Recv ZSGSRD 29129
17-03-18 02:40:59.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.324 -07 000000430 INF: FPGA: Recv ZSGSRD 29126
17-03-18 02:40:59.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.334 -07 000000501 INF: FPGA: Recv ZSGSRD 29124
17-03-18 02:40:59.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.344 -07 000000512 INF: FPGA: Recv ZSGSRD 29129
17-03-18 02:40:59.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.354 -07 000000626 INF: FPGA: Recv ZSGSRD 29123
17-03-18 02:40:59.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.364 -07 000000424 INF: FPGA: Recv ZSGSRD 29125
17-03-18 02:40:59.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.374 -07 000000467 INF: FPGA: Recv ZSGSRD 29127
17-03-18 02:40:59.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.384 -07 000000606 INF: FPGA: Recv ZSGSRD 29128
17-03-18 02:40:59.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:40:59.394 -07 000000576 INF: FPGA: Recv ZSGSRD 29126
17-03-18 02:40:59.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:40:59.404 -07 000000461 INF: FPGA: Recv ZPIEZORD 24620
17-03-18 02:40:59.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:40:59.414 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -9.9 V.
17-03-18 02:40:59.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29126 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29126 (-126.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29120 (-126.6 uncal um), Max = 29129 (-126.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:40:59.414 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29126, posNoise = 3, negNoise = 6
17-03-18 02:40:59.414 -07 000000610 INF: Z Motor: After move to -0.127430, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:40:59.414 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:40:59.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:40:59.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:40:59.414 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:40:59.414 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:40:59.414 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:40:59.414 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:40:59.414 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:40:59.414 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:40:59.414 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:40:59.414 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:40:59.414 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:40:59.414 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:40:59.424 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:40:59.424 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:40:59.424 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:40:59.424 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:40:59.434 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:40:59.434 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:40:59.434 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:40:59.434 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:40:59.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 28014 150\n [Camera]
17-03-18 02:40:59.634 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:41:00.034 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:41:00.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:41:00.034 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:41:00.034 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:41:00.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:41:00.034 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:41:00.034 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:41:00.034 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:41:00.034 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:41:00.034 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:41:00.224 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28014 782
17-03-18 02:41:00.374 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 932
17-03-18 02:41:00.414 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:41:00.414 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:41:00.414 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:41:00.414 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:41:00.414 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:41:00.414 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:41:00.414 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:41:00.414 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:41:00.414 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:41:00.424 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:41:00.564 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:41:00.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:41:00.564 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:41:00.564 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:41:00.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:41:00.564 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:41:00.564 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:41:00.564 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:41:00.564 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:41:00.564 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:41:00.754 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:41:00.754 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:41:00.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 28014 150' command took 2 ms to send, 1316 ms to get response, and 1322 ms overall
17-03-18 02:41:00.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:41:00.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127434954852065. ------
17-03-18 02:41:00.764 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:41:00.764 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13338 mm
17-03-18 02:41:00.764 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:41:00.764 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29138, sync = True, waitForSettling = False)
17-03-18 02:41:00.764 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:41:00.764 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:41:00.764 -07 000000618 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:41:00.764 -07 000000424 INF: Z Motor: Moving to -0.133385 mm, started at -0.127435 mm, distance = -5.95 um
17-03-18 02:41:00.774 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:00.774 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:41:00.774 -07 000000579 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:41:00.784 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:41:00.784 -07 000000618 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:41:00.784 -07 000000424 INF: FPGA: Xmit ZDACW 29138\n [Z Motor]
17-03-18 02:41:00.784 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:41:00.784 -07 000000618 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:41:00.784 -07 000000618 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:41:00.794 -07 000000424 INF: FPGA: 'ZDACW 29138' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:41:00.794 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:41:00.804 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:41:00.814 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:41:00.814 -07 000000501 INF: FPGA: Recv ZDACR 29138
17-03-18 02:41:00.824 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:41:00.824 -07 000000424 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:41:00.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:41:00.964 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:41:00.964 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:41:00.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:41:00.964 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:41:00.964 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:41:00.974 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:41:00.974 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:41:00.974 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:41:00.974 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:41:00.994 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:41:00.994 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:41:01.174 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:41:01.174 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 394 ms overall
17-03-18 02:41:01.204 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:41:01.214 -07 000000501 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:41:01.214 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:41:01.214 -07 000000618 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:41:01.214 -07 000000618 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:41:01.214 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.143 mm/sec
17-03-18 02:41:01.374 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.008536,
17-03-18 02:41:01.504 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:41:01.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 101. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:41:02.164 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:41:02.164 -07 000000430 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:41:02.174 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:41:02.174 -07 000000618 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:41:02.184 -07 000000618 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:41:02.184 -07 000000618 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:41:02.184 -07 000000618 INF: Y Motor: Moved to 74.8320 after 1421 ms (table move)
17-03-18 02:41:02.194 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133385 mm (DAC = 29138)
17-03-18 02:41:02.194 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.194 -07 000000430 INF: FPGA: Recv ZSGSRD 30055
17-03-18 02:41:02.204 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:41:02.204 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.204 -07 000000606 INF: FPGA: Recv ZSGSRD 30055
17-03-18 02:41:02.214 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.214 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.214 -07 000000618 INF: FPGA: Recv ZSGSRD 30053
17-03-18 02:41:02.224 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.224 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.224 -07 000000569 INF: FPGA: Recv ZSGSRD 30052
17-03-18 02:41:02.234 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.234 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.234 -07 000000606 INF: FPGA: Recv ZSGSRD 30058
17-03-18 02:41:02.244 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.244 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.244 -07 000000501 INF: FPGA: Recv ZSGSRD 30059
17-03-18 02:41:02.254 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.254 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30059
17-03-18 02:41:02.264 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.264 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30050
17-03-18 02:41:02.274 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.274 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.274 -07 000000569 INF: FPGA: Recv ZSGSRD 30043
17-03-18 02:41:02.284 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.284 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:02.284 -07 000000606 INF: FPGA: Recv ZSGSRD 30054
17-03-18 02:41:02.294 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.294 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:41:02.294 -07 000000455 INF: FPGA: Recv ZPIEZORD 25833
17-03-18 02:41:02.304 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:02.304 -07 000000512 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.3 V.
17-03-18 02:41:02.304 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30054 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30054 (-132.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30043 (-132.5 uncal um), Max = 30059 (-132.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:41:02.304 -07 000000512 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30054, posNoise = 5, negNoise = 11
17-03-18 02:41:02.304 -07 000000512 INF: Z Motor: After move to -0.133385, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:41:02.304 -07 000000512 INF: Z Motor: Settle wait time = 1424 ms, measure time = 109 ms (allowed 150 ms), total time = 1533 ms
17-03-18 02:41:02.304 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:41:02.354 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-18 02:41:02.354 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:41:02.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:41:02.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:41:02.354 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:41:02.354 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:41:02.354 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:41:02.354 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:41:02.354 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:41:02.354 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:41:02.364 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:41:02.364 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:41:02.374 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:41:02.374 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:41:02.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:41:02.414 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:41:02.714 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:41:02.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:41:02.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:41:02.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-18 02:41:02.754 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:41:02.754 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:41:02.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:41:02.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:41:02.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:41:02.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:41:02.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:41:02.954 -07 000000629 INF: Autofocus start
17-03-18 02:41:02.954 -07 000000629 INF: MeasureProfile start
17-03-18 02:41:02.954 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:41:02.954 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:41:02.964 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:41:02.964 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:41:02.964 -07 000000629 INF: MeasureProfile done
17-03-18 02:41:02.964 -07 000000629 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:41:02.964 -07 000000629 INF: Autofocus finished
17-03-18 02:41:03.164 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:41:03.164 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:41:03.174 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133396623719619. ----------
17-03-18 02:41:03.174 -07 000000610 INF: Cycle	102	Tile	19	Exposure Settings		A	397	G	191	T	191	C	397
17-03-18 02:41:03.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27645, sync = True, waitForSettling = True)
17-03-18 02:41:03.174 -07 000000610 INF: Z Motor: Moving to -0.126551 mm, started at -0.133397 mm, distance = 6.85 um
17-03-18 02:41:03.174 -07 000000610 INF: FPGA: Xmit ZDACW 27645\n [Z Motor]
17-03-18 02:41:03.174 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:41:03.184 -07 000000610 INF: FPGA: 'ZDACW 27645' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:41:03.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:41:03.184 -07 000000512 INF: FPGA: Recv ZDACR 27645
17-03-18 02:41:03.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:41:03.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.344 -07 000000626 INF: FPGA: Recv ZSGSRD 28982
17-03-18 02:41:03.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:41:03.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.354 -07 000000579 INF: FPGA: Recv ZSGSRD 28991
17-03-18 02:41:03.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.364 -07 000000590 INF: FPGA: Recv ZSGSRD 28994
17-03-18 02:41:03.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.374 -07 000000606 INF: FPGA: Recv ZSGSRD 28986
17-03-18 02:41:03.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.384 -07 000000462 INF: FPGA: Recv ZSGSRD 28989
17-03-18 02:41:03.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.394 -07 000000424 INF: FPGA: Recv ZSGSRD 28986
17-03-18 02:41:03.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.404 -07 000000502 INF: FPGA: Recv ZSGSRD 28989
17-03-18 02:41:03.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.414 -07 000000576 INF: FPGA: Recv ZSGSRD 28993
17-03-18 02:41:03.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.424 -07 000000569 INF: FPGA: Recv ZSGSRD 28983
17-03-18 02:41:03.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:41:03.434 -07 000000467 INF: FPGA: Recv ZSGSRD 28991
17-03-18 02:41:03.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:41:03.444 -07 000000461 INF: FPGA: Recv ZPIEZORD 24469
17-03-18 02:41:03.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:03.454 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -9.9 V.
17-03-18 02:41:03.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28988 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28989 (-125.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 28982 (-125.7 uncal um), Max = 28994 (-125.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:41:03.454 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28988, posNoise = 6, negNoise = 6
17-03-18 02:41:03.454 -07 000000610 INF: Z Motor: After move to -0.126551, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:41:03.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:41:03.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:41:03.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:41:03.454 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:41:03.454 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:41:03.454 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:41:03.454 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:41:03.454 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:41:03.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:41:03.454 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:41:03.454 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:41:03.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:41:03.454 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:41:03.464 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:41:03.464 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:41:03.464 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:41:03.464 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:41:03.474 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:41:03.474 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:41:03.474 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:41:03.474 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:41:03.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 397 397 191 191 27822 150\n [Camera]
17-03-18 02:41:03.674 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:41:04.064 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 589
17-03-18 02:41:04.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 589
17-03-18 02:41:04.074 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:41:04.074 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:41:04.074 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:41:04.074 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 589
17-03-18 02:41:04.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 589
17-03-18 02:41:04.074 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:41:04.074 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:41:04.074 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:41:04.264 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27822 782
17-03-18 02:41:04.414 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:41:04.454 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:41:04.454 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:41:04.454 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:41:04.454 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:41:04.454 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:41:04.454 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:41:04.464 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:41:04.464 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:41:04.464 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:41:04.464 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:41:04.604 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1123
17-03-18 02:41:04.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1123
17-03-18 02:41:04.604 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:41:04.604 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:41:04.604 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:41:04.614 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1123
17-03-18 02:41:04.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1123
17-03-18 02:41:04.614 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:41:04.614 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:41:04.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:41:04.794 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1315
17-03-18 02:41:04.794 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:41:04.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 397 397 191 191 27822 150' command took 2 ms to send, 1315 ms to get response, and 1322 ms overall
17-03-18 02:41:04.994 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:41:04.994 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:41:04.994 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:41:04.994 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:41:04.994 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:41:04.994 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:41:04.994 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:41:05.004 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:41:05.004 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:41:05.004 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:41:05.004 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:41:05.044 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:41:05.044 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:41:05.084 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:41:05.224 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-18 02:41:05.224 -07 000000610 INF: Imaging Cycle 102: ScanTilesCommand Cycle 102 time end. Duration was 161771 ms.
17-03-18 02:41:05.224 -07 000000610 INF: =================== Cycle #102 ===================
17-03-18 02:41:05.224 -07 000000610 INF: ===================  ===================
17-03-18 02:41:05.224 -07 000000561 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:41:05.224 -07 000000430 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 02:41:05.234 -07 000000561 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:41:05.234 -07 000000561 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 02:41:05.234 -07 000000561 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 102, FrontChillerTemperature: 4.008536, FrontChillerHeatSinkTemperature: 0.54924, AmbientTemperature: 18.71372, FlowCellCompartmentTemperature: 22.0027, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.46126, GreenLEDSensorTemperature: 27.10184, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 02:41:05.314 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.