17-03-18 02:41:05.374 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:41:05.374 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:41:05.374 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 02:41:05.374 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:41:05.374 -07 000000461 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:41:05.384 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:41:05.384 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:41:05.384 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:41:05.384 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:41:05.384 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:41:05.494 -07 000000618 INF: FPGA: Recv YMVTO 154379 878
17-03-18 02:41:05.494 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 118 ms overall
17-03-18 02:41:05.494 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 02:41:05.494 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 02:41:05.494 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 02:41:06.504 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:41:06.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1520, R2=1584, Total=3104. Warn if over 250 bubbles per interval.
17-03-18 02:41:06.754 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.001704,
17-03-18 02:41:08.494 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:41:08.494 -07 000000467 INF: FPGA: Recv YRDPOS 154387
17-03-18 02:41:08.504 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:41:08.504 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:41:08.524 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:41:08.524 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 02:41:08.524 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3156 ms
17-03-18 02:41:08.534 -07 000000610 INF: =================== Cycle #103, Flow Cell Temp 60° ===================
17-03-18 02:41:08.534 -07 000000610 INF: =================== Cycle #103, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:41:08.534 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 02:41:08.534 -07 000000467 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:41:08.544 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:41:08.544 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:41:08.544 -07 000000430 INF: FPGA: Recv TEC2EN 
17-03-18 02:41:08.554 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:08.554 -07 000000610 INF: =================== Cycle #103, Flow Cell Temp 60° ===================
17-03-18 02:41:08.554 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:41:08.554 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:41:08.554 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:08.584 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:41:08.584 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:41:08.584 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:41:08.884 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:41:08.904 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:41:08.904 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:41:08.954 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:08.974 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:41:08.974 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:41:09.074 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:41:09.074 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:41:09.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:09.104 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:41:09.104 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:41:09.104 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:41:09.234 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:41:09.274 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:11.504 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-18 02:41:11.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1522, R2=1584, Total=3106. Warn if over 250 bubbles per interval.
17-03-18 02:41:12.114 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.996267,
17-03-18 02:41:12.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:12.434 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:12.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:12.884 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:13.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:13.334 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:13.334 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:41:13.334 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:41:13.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:13.494 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:41:13.494 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:41:13.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:13.654 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:41:13.654 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:41:13.654 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:41:13.784 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:41:13.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:14.244 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:14.274 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:14.274 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:41:14.274 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:41:15.494 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:41:15.494 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:41:15.494 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:15.514 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:41:15.514 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:41:15.514 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:41:15.644 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:41:15.664 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:41:15.664 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:41:15.714 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:15.734 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:41:15.734 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:41:15.834 -07 000000610 INF: =================== Cycle #103, Pumping Reagent CMS (4) ===================
17-03-18 02:41:15.834 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:41:15.834 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:15.864 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:41:15.864 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:41:15.864 -07 000000610 INF: =================== Cycle #103, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:41:15.994 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:41:16.034 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:16.504 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-18 02:41:16.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1523, R2=1586, Total=3109. Warn if over 250 bubbles per interval.
17-03-18 02:41:17.474 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:17.484 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.000345,
17-03-18 02:41:17.504 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:17.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:17.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:17.954 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:41:17.954 -07 000000610 INF: =================== Cycle #103, Pumping Reagent CMS (4) ===================
17-03-18 02:41:18.084 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:18.114 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:41:18.114 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:41:18.244 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:18.274 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:41:18.274 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:41:18.274 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:41:18.404 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:41:18.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:18.864 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:18.894 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:18.894 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:41:18.894 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:41:20.114 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:41:20.114 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:41:20.114 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:20.134 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:41:20.134 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:41:20.134 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:41:20.284 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:41:20.304 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:41:20.304 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:41:20.354 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:20.374 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:41:20.374 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:41:20.474 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:41:20.474 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:41:20.474 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:20.504 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:41:20.504 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:41:20.504 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:41:20.634 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:41:20.674 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:21.504 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:41:21.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1523, R2=1587, Total=3110. Warn if over 250 bubbles per interval.
17-03-18 02:41:21.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:21.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:21.574 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:41:21.574 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:41:21.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:21.734 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:41:21.734 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:41:21.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:21.894 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:41:21.894 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:41:21.894 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:41:22.024 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:41:22.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:22.484 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:22.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:22.514 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:41:22.514 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:41:22.514 -07 000000512 INF: WaitCommand(10000) start
17-03-18 02:41:22.514 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:41:22.514 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:41:22.864 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.990831,
17-03-18 02:41:23.734 -07 000000501 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:41:23.734 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-18 02:41:23.764 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:41:23.764 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:41:23.894 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:41:23.934 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:25.464 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:25.494 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:25.914 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:25.944 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:25.944 -07 000000501 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:41:25.944 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:41:25.944 -07 000000501 INF: ===================  ===================
17-03-18 02:41:26.504 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:41:26.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1523, R2=1587, Total=3110. Warn if over 250 bubbles per interval.
17-03-18 02:41:28.224 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.003063,
17-03-18 02:41:31.504 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:41:31.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1523, R2=1587, Total=3110. Warn if over 250 bubbles per interval.
17-03-18 02:41:32.524 -07 000000512 INF: WaitCommand(10000) end
17-03-18 02:41:32.524 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:41:32.524 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:41:32.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:32.554 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:41:32.554 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:41:32.554 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:41:32.684 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:41:32.724 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:33.604 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.979922,
17-03-18 02:41:36.504 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:41:36.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1523, R2=1587, Total=3110. Warn if over 250 bubbles per interval.
17-03-18 02:41:38.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:38.884 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:38.964 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.994908,
17-03-18 02:41:39.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:39.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:39.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:39.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:40.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:40.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:40.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:40.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:40.684 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:41:40.684 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:41:40.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:40.844 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:41:40.844 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:41:40.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:41.004 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:41:41.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:41:41.004 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:41:41.134 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:41:41.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:41.504 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-18 02:41:41.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1527, R2=1591, Total=3118. Warn if over 250 bubbles per interval.
17-03-18 02:41:41.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:41.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:41.624 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:41:41.624 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:41:42.844 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:41:42.844 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:41:42.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:42.864 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:41:42.864 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:41:42.864 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:41:43.074 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:41:43.094 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:41:43.094 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:41:43.144 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:43.164 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:41:43.164 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:41:43.264 -07 000000610 INF: =================== Cycle #103, Pumping Reagent IMT (1) ===================
17-03-18 02:41:43.264 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:41:43.264 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:43.294 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:41:43.294 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:41:43.294 -07 000000610 INF: =================== Cycle #103, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:41:43.424 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:41:43.464 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:44.334 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.994908,
17-03-18 02:41:44.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:44.934 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:45.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:45.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:45.384 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:41:45.384 -07 000000610 INF: =================== Cycle #103, Pumping Reagent IMT (1) ===================
17-03-18 02:41:45.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:45.544 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:41:45.544 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:41:45.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:45.704 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:41:45.704 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:41:45.704 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:41:45.834 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:41:45.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:46.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:46.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:46.324 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:41:46.324 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:41:46.504 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:41:46.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1527, R2=1591, Total=3118. Warn if over 250 bubbles per interval.
17-03-18 02:41:47.544 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:41:47.544 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:41:47.544 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:47.564 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:41:47.564 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:41:47.564 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:41:47.794 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:41:47.814 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:41:47.814 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:41:47.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:41:47.884 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:41:47.884 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:41:47.984 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:41:47.984 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:41:47.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:48.014 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:41:48.014 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:41:48.014 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:41:48.144 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:41:48.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:41:49.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:49.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:49.084 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:41:49.084 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:41:49.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:49.244 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:41:49.244 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:41:49.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:41:49.404 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:41:49.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:41:49.404 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:41:49.534 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:41:49.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:49.704 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.964938,
17-03-18 02:41:49.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:41:50.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:41:50.024 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:41:50.024 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:41:50.024 -07 000000610 INF: =================== Cycle #103, Flow Cell Temp 65° ===================
17-03-18 02:41:50.024 -07 000000610 INF: =================== Cycle #103, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:41:50.024 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:41:50.024 -07 000000462 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:41:50.034 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:41:50.034 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:41:50.034 -07 000000579 INF: FPGA: Recv TEC2EN 
17-03-18 02:41:50.044 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:41:50.044 -07 000000610 INF: =================== Cycle #103, Flow Cell Temp 65° ===================
17-03-18 02:41:50.044 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:41:50.044 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:41:51.504 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-18 02:41:51.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1591, Total=3121. Warn if over 250 bubbles per interval.
17-03-18 02:41:55.074 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.004458,
17-03-18 02:41:56.504 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 02:41:56.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1593, Total=3123. Warn if over 250 bubbles per interval.
17-03-18 02:42:00.454 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.011254,
17-03-18 02:42:01.504 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:42:01.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:05.814 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.027603,
17-03-18 02:42:06.504 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:06.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:11.194 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.014009,
17-03-18 02:42:11.504 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:11.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:16.504 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:16.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:16.554 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.989471,
17-03-18 02:42:20.054 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:42:20.054 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:42:20.054 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:42:20.154 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:42:20.184 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:42:20.184 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:42:20.184 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:42:20.314 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:42:20.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:42:20.894 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:42:20.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:42:20.924 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 02:42:20.924 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:42:21.054 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:42:21.084 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:42:21.084 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:42:21.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:42:21.244 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:42:21.244 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:42:21.244 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:42:21.374 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:42:21.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:42:21.504 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:21.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:21.834 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:42:21.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:42:21.864 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:42:21.864 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:42:21.864 -07 000000569 INF: WaitCommand(30000) start
17-03-18 02:42:21.864 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:42:21.864 -07 000000576 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:42:21.924 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.989471,
17-03-18 02:42:23.084 -07 000000576 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:42:23.084 -07 000000576 INF: LanePump: Xmit /1?\r
17-03-18 02:42:23.114 -07 000000576 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:42:23.114 -07 000000576 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:42:23.244 -07 000000576 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:42:23.284 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:42:25.624 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-18 02:42:25.654 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:42:26.074 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-18 02:42:26.104 -07 000000576 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:42:26.104 -07 000000576 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 02:42:26.104 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:42:26.104 -07 000000576 INF: ===================  ===================
17-03-18 02:42:26.504 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:26.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:27.294 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.001704,
17-03-18 02:42:31.504 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:31.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:32.674 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.978563,
17-03-18 02:42:36.504 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:36.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:38.034 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.005817,
17-03-18 02:42:41.504 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:41.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:43.414 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.001704,
17-03-18 02:42:46.504 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:46.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:48.774 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.007176,
17-03-18 02:42:51.504 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:42:51.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1530, R2=1594, Total=3124. Warn if over 250 bubbles per interval.
17-03-18 02:42:51.874 -07 000000569 INF: WaitCommand(30000) end
17-03-18 02:42:51.874 -07 000000610 INF: =================== Cycle #103, Flow Cell Temp 22° ===================
17-03-18 02:42:51.874 -07 000000610 INF: =================== Cycle #103, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:42:51.874 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 02:42:51.874 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:42:51.884 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:42:51.884 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:42:51.884 -07 000000502 INF: FPGA: Recv TEC2EN 
17-03-18 02:42:51.894 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:42:51.894 -07 000000610 INF: =================== Cycle #103, Flow Cell Temp 22° ===================
17-03-18 02:42:51.894 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:42:51.894 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:42:51.894 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:42:51.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:42:51.934 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:42:51.934 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:42:51.934 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:42:52.064 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:42:52.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:42:54.144 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.983999,
17-03-18 02:42:55.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:42:55.264 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:42:55.684 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:42:55.714 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:42:56.134 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:42:56.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:42:56.164 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:42:56.164 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:42:56.294 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:42:56.324 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:42:56.324 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:42:56.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:42:56.484 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:42:56.484 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:42:56.484 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:42:56.504 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:42:56.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:42:56.614 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:42:56.644 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:42:57.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:42:57.104 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:42:57.104 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:42:57.104 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:42:58.324 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:42:58.324 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:42:58.324 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:42:58.344 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:42:58.344 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:42:58.344 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:42:58.494 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:42:58.514 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:42:58.514 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:42:58.564 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:42:58.584 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:42:58.584 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:42:58.684 -07 000000610 INF: =================== Cycle #103, Pumping Reagent USM (2) ===================
17-03-18 02:42:58.684 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:42:58.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:42:58.714 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:42:58.714 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:42:58.714 -07 000000610 INF: =================== Cycle #103, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:42:58.844 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:42:58.884 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:42:59.514 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.014009,
17-03-18 02:43:00.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:43:00.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:43:00.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:43:00.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:43:00.804 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 02:43:00.804 -07 000000610 INF: =================== Cycle #103, Pumping Reagent USM (2) ===================
17-03-18 02:43:00.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:43:00.964 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:43:00.964 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:43:01.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:43:01.124 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:43:01.124 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:43:01.124 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:43:01.254 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:43:01.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:43:01.504 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:01.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:01.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:43:01.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:43:01.744 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:43:01.744 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:43:02.964 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:43:02.964 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:43:02.964 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:43:02.984 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:43:02.984 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:43:02.984 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:43:03.134 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:43:03.154 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:43:03.154 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:43:03.204 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:43:03.224 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:43:03.224 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:43:03.324 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:43:03.324 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:43:03.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:43:03.354 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:43:03.354 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:43:03.354 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:43:03.484 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:43:03.524 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:43:04.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:43:04.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:43:04.424 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:43:04.424 -07 000000610 INF: =================== Cycle #103, Pumping Reagent PR2 (3) ===================
17-03-18 02:43:04.554 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:43:04.584 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:43:04.584 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:43:04.714 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:43:04.744 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:43:04.744 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:43:04.744 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:43:04.874 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:43:04.894 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.99219,
17-03-18 02:43:04.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:43:05.334 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:43:05.364 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:43:05.364 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:43:05.364 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:43:05.364 -07 000000561 INF: WaitCommand(10000) start
17-03-18 02:43:05.364 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:43:05.364 -07 000000579 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:43:06.504 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:06.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:06.584 -07 000000579 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:43:06.584 -07 000000579 INF: LanePump: Xmit /1?\r
17-03-18 02:43:06.614 -07 000000579 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:43:06.614 -07 000000579 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:43:06.744 -07 000000579 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:43:06.784 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:43:08.314 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 02:43:08.344 -07 000000579 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:43:08.764 -07 000000579 INF: LanePump: Xmit /1Q\r
17-03-18 02:43:08.794 -07 000000579 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:43:08.794 -07 000000579 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:43:08.794 -07 000000579 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:43:08.794 -07 000000579 INF: ===================  ===================
17-03-18 02:43:10.254 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.994908,
17-03-18 02:43:11.504 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:11.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:15.374 -07 000000561 INF: WaitCommand(10000) end
17-03-18 02:43:15.374 -07 000000610 INF: =================== Cycle #103, Imaging ===================
17-03-18 02:43:15.374 -07 000000610 INF: Imaging Cycle 103: ScanTilesCommand Cycle 103 time start.
17-03-18 02:43:15.374 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:43:15.374 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:43:15.404 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:43:15.404 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:43:15.404 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:43:15.624 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.02213,
17-03-18 02:43:15.704 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:43:15.724 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:43:15.724 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:43:15.774 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:43:15.794 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:43:15.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:15.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:15.794 -07 000000461 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:43:15.794 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:15.794 -07 000000461 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:43:15.804 -07 000000561 INF: FPGA: Recv EXLED1ON 
17-03-18 02:43:15.804 -07 000000461 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:43:15.804 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:43:15.804 -07 000000569 INF: FPGA: Recv EXLED1ADCR 23200
17-03-18 02:43:15.814 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:15.814 -07 000000461 INF: RedLED: Using Red data: Photodiode ADC 23200 --> 7.4 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW
17-03-18 02:43:15.814 -07 000000461 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:43:15.814 -07 000000430 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:43:15.824 -07 000000461 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:15.824 -07 000000461 INF: RedLED: LED was on for 19 ms
17-03-18 02:43:15.824 -07 000000461 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-18 02:43:15.824 -07 000000461 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:43:15.824 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:15.824 -07 000000461 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:43:15.824 -07 000000590 INF: FPGA: Recv EXLED2ON 
17-03-18 02:43:15.834 -07 000000461 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:15.834 -07 000000461 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:43:15.834 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2100
17-03-18 02:43:15.844 -07 000000461 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:15.844 -07 000000461 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-18 02:43:15.844 -07 000000461 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:43:15.844 -07 000000455 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:43:15.854 -07 000000461 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:15.854 -07 000000461 INF: GreenLED: LED was on for 19 ms
17-03-18 02:43:15.854 -07 000000461 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 02:43:15.854 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:43:15.854 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 02:43:15.864 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:43:15.864 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:43:16.364 -07 000000626 INF: FPGA: Recv EMOUT
17-03-18 02:43:16.364 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:43:16.364 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:43:16.364 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-18 02:43:16.374 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:16.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:16.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126548413576502. ------
17-03-18 02:43:16.374 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:16.374 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17863 mm
17-03-18 02:43:16.374 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:16.384 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:16.384 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:43:16.384 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:43:16.384 -07 000000455 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 02:43:16.384 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:16.384 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 39022, sync = True, waitForSettling = False)
17-03-18 02:43:16.384 -07 000000467 INF: Z Motor: Moving to -0.178631 mm, started at -0.126548 mm, distance = -52.08 um
17-03-18 02:43:16.394 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:16.394 -07 000000591 INF: FPGA: Recv YRDPOS 154387
17-03-18 02:43:16.404 -07 000000467 INF: FPGA: Xmit ZDACW 39022\n [Z Motor]
17-03-18 02:43:16.404 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:43:16.404 -07 000000455 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:16.404 -07 000000455 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:43:16.404 -07 000000455 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:43:16.404 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:43:16.414 -07 000000467 INF: FPGA: 'ZDACW 39022' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:43:16.414 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:16.414 -07 000000569 INF: FPGA: Recv ZDACR 39022
17-03-18 02:43:16.424 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:16.424 -07 000000467 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:43:16.424 -07 000000455 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:43:16.504 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:16.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:16.584 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:16.584 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:43:18.104 -07 000000512 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 02:43:18.104 -07 000000455 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1679 ms to get response, and 1708 ms overall
17-03-18 02:43:18.114 -07 000000455 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:43:18.114 -07 000000455 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 02:43:18.114 -07 000000455 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1709 ms, distance = 15.472 mm, average velocity = 9.053 mm/sec
17-03-18 02:43:20.964 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:20.964 -07 000000626 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:43:20.974 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:20.974 -07 000000455 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:20.994 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.011254,
17-03-18 02:43:21.004 -07 000000455 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:21.004 -07 000000455 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 02:43:21.004 -07 000000455 INF: Y Motor: Moved to 59.9102 after 4619 ms
17-03-18 02:43:21.004 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178631 mm (DAC = 39022)
17-03-18 02:43:21.014 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.014 -07 000000455 INF: FPGA: Recv ZSGSRD 37097
17-03-18 02:43:21.024 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:43:21.024 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.024 -07 000000626 INF: FPGA: Recv ZSGSRD 37092
17-03-18 02:43:21.034 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:21.054 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.054 -07 000000430 INF: FPGA: Recv ZSGSRD 37097
17-03-18 02:43:21.064 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:43:21.064 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.064 -07 000000590 INF: FPGA: Recv ZSGSRD 37102
17-03-18 02:43:21.074 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.074 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.074 -07 000000444 INF: FPGA: Recv ZSGSRD 37095
17-03-18 02:43:21.084 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.084 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.084 -07 000000561 INF: FPGA: Recv ZSGSRD 37101
17-03-18 02:43:21.094 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.094 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.094 -07 000000502 INF: FPGA: Recv ZSGSRD 37099
17-03-18 02:43:21.104 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.104 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.104 -07 000000430 INF: FPGA: Recv ZSGSRD 37095
17-03-18 02:43:21.114 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.114 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.114 -07 000000626 INF: FPGA: Recv ZSGSRD 37095
17-03-18 02:43:21.124 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.124 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:21.124 -07 000000512 INF: FPGA: Recv ZSGSRD 37097
17-03-18 02:43:21.134 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.134 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:21.134 -07 000000569 INF: FPGA: Recv ZPIEZORD 33315
17-03-18 02:43:21.144 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.144 -07 000000501 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.954 V. Piezo Error = -8.4 V.
17-03-18 02:43:21.144 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37097 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37097 (-177.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37092 (-177.7 uncal um), Max = 37102 (-177.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:43:21.144 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37097, posNoise = 5, negNoise = 5
17-03-18 02:43:21.144 -07 000000501 INF: Z Motor: After move to -0.178631, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:21.144 -07 000000501 INF: Z Motor: Settle wait time = 4622 ms, measure time = 136 ms (allowed 150 ms), total time = 4758 ms
17-03-18 02:43:21.144 -07 000000501 INF: Z Motor: Waiting extra 14 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:21.164 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4783 ms
17-03-18 02:43:21.164 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:21.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:21.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:21.164 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:21.164 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:21.164 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:21.164 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:21.164 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:21.164 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:43:21.194 -07 000000590 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 02:43:21.194 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:21.194 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:43:21.194 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:21.204 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:43:21.204 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 02:43:21.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:21.254 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:21.504 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:21.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:21.554 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:21.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:21.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:21.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592212048, 0x0, 559484976) start.
17-03-18 02:43:21.594 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:21.594 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:21.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:43:21.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592212048, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:43:21.684 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:21.684 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:43:21.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:43:21.694 -07 000000461 INF: Image SNR check: start
17-03-18 02:43:21.694 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:21.694 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:21.704 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:21.704 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:21.704 -07 000000461 INF: Image SNR check: pass  [peak (Max-Min)=153.64]
17-03-18 02:43:21.704 -07 000000461 INF: Autofocus start
17-03-18 02:43:21.704 -07 000000461 INF: MeasureProfile start
17-03-18 02:43:21.714 -07 000000461 INF: MeasureProfile done
17-03-18 02:43:21.714 -07 000000461 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:43:21.714 -07 000000461 INF: Autofocus finished
17-03-18 02:43:21.904 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:21.904 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:43:21.904 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178642349834041. ----------
17-03-18 02:43:21.904 -07 000000610 INF: Cycle	103	Tile	1	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:21.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37502, sync = True, waitForSettling = True)
17-03-18 02:43:21.914 -07 000000610 INF: Z Motor: Moving to -0.171673 mm, started at -0.178642 mm, distance = 6.97 um
17-03-18 02:43:21.914 -07 000000610 INF: FPGA: Xmit ZDACW 37502\n [Z Motor]
17-03-18 02:43:21.914 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:43:21.924 -07 000000610 INF: FPGA: 'ZDACW 37502' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:21.924 -07 000000569 INF: FPGA: Recv ZDACR 37502
17-03-18 02:43:21.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:21.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:22.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.084 -07 000000626 INF: FPGA: Recv ZSGSRD 36012
17-03-18 02:43:22.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:22.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.094 -07 000000424 INF: FPGA: Recv ZSGSRD 36018
17-03-18 02:43:22.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.104 -07 000000579 INF: FPGA: Recv ZSGSRD 36015
17-03-18 02:43:22.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.114 -07 000000462 INF: FPGA: Recv ZSGSRD 36013
17-03-18 02:43:22.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.124 -07 000000501 INF: FPGA: Recv ZSGSRD 36015
17-03-18 02:43:22.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.134 -07 000000626 INF: FPGA: Recv ZSGSRD 36014
17-03-18 02:43:22.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.144 -07 000000502 INF: FPGA: Recv ZSGSRD 36019
17-03-18 02:43:22.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.154 -07 000000455 INF: FPGA: Recv ZSGSRD 36015
17-03-18 02:43:22.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.164 -07 000000467 INF: FPGA: Recv ZSGSRD 36014
17-03-18 02:43:22.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:22.174 -07 000000629 INF: FPGA: Recv ZSGSRD 36013
17-03-18 02:43:22.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:22.184 -07 000000618 INF: FPGA: Recv ZPIEZORD 31904
17-03-18 02:43:22.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:22.194 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-18 02:43:22.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36015 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36014 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36012 (-170.8 uncal um), Max = 36019 (-170.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:43:22.194 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36015, posNoise = 4, negNoise = 3
17-03-18 02:43:22.194 -07 000000610 INF: Z Motor: After move to -0.171673, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:22.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:43:22.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:22.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:22.194 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:22.194 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:22.194 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:22.194 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:22.194 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:22.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:22.194 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:22.194 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:22.194 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:43:22.194 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:43:22.204 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:43:22.204 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:22.214 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:43:22.214 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:43:22.214 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 02:43:22.224 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:22.224 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:43:22.224 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:22.234 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:43:22.234 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-18 02:43:22.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37679 150\n [Camera]
17-03-18 02:43:22.444 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:43:22.844 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:22.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:22.844 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:22.844 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:22.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:22.844 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:22.844 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:22.844 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:43:22.854 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:22.854 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:43:23.034 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37679 783
17-03-18 02:43:23.184 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:23.244 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:43:23.244 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:43:23.244 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:23.244 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:43:23.244 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:43:23.244 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:23.244 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:23.244 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:43:23.254 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:43:23.264 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:43:23.374 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:43:23.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:43:23.374 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:23.494 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:43:23.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:43:23.494 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:23.494 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:23.494 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:43:23.494 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:23.494 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:43:23.564 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:43:23.564 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:43:23.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37679 150' command took 2 ms to send, 1317 ms to get response, and 1325 ms overall
17-03-18 02:43:23.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:23.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171691352296656. ------
17-03-18 02:43:23.574 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:23.574 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17782 mm
17-03-18 02:43:23.574 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:23.574 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:43:23.574 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:23.574 -07 000000591 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 02:43:23.574 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38845, sync = True, waitForSettling = False)
17-03-18 02:43:23.574 -07 000000467 INF: Z Motor: Moving to -0.177821 mm, started at -0.171691 mm, distance = -6.13 um
17-03-18 02:43:23.584 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:23.584 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:23.584 -07 000000512 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:43:23.594 -07 000000467 INF: FPGA: Xmit ZDACW 38845\n [Z Motor]
17-03-18 02:43:23.594 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:43:23.594 -07 000000591 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:23.594 -07 000000591 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:43:23.594 -07 000000591 INF: Y Motor: Moving 1332 steps2
17-03-18 02:43:23.594 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:43:23.604 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:23.604 -07 000000467 INF: FPGA: 'ZDACW 38845' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:43:23.614 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:43:23.624 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:23.624 -07 000000444 INF: FPGA: Recv ZDACR 38845
17-03-18 02:43:23.634 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:43:23.634 -07 000000467 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:43:23.804 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:23.804 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:43:23.894 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:43:23.894 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:43:23.894 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:23.894 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:43:23.894 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:43:23.894 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:23.904 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:23.904 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 02:43:23.904 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:43:23.914 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-18 02:43:23.984 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:43:23.984 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:43:24.024 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:24.024 -07 000000424 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:43:24.034 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:43:24.034 -07 000000591 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:24.034 -07 000000591 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:43:24.034 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-18 02:43:24.984 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:24.984 -07 000000618 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:43:24.994 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:24.994 -07 000000591 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:25.014 -07 000000591 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:25.014 -07 000000591 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:43:25.014 -07 000000591 INF: Y Motor: Moved to 60.7324 after 1443 ms (table move)
17-03-18 02:43:25.024 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177821 mm (DAC = 38845)
17-03-18 02:43:25.024 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.024 -07 000000629 INF: FPGA: Recv ZSGSRD 36974
17-03-18 02:43:25.034 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:25.034 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.034 -07 000000606 INF: FPGA: Recv ZSGSRD 36968
17-03-18 02:43:25.044 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:43:25.044 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.044 -07 000000561 INF: FPGA: Recv ZSGSRD 36971
17-03-18 02:43:25.054 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:25.054 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.054 -07 000000576 INF: FPGA: Recv ZSGSRD 36975
17-03-18 02:43:25.064 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:25.064 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.064 -07 000000501 INF: FPGA: Recv ZSGSRD 36972
17-03-18 02:43:25.074 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:25.074 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.074 -07 000000569 INF: FPGA: Recv ZSGSRD 36974
17-03-18 02:43:25.084 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:25.084 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.084 -07 000000606 INF: FPGA: Recv ZSGSRD 36964
17-03-18 02:43:25.094 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:25.094 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.094 -07 000000561 INF: FPGA: Recv ZSGSRD 36969
17-03-18 02:43:25.104 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:25.104 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.104 -07 000000455 INF: FPGA: Recv ZSGSRD 36970
17-03-18 02:43:25.114 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:25.114 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:25.114 -07 000000501 INF: FPGA: Recv ZSGSRD 36964
17-03-18 02:43:25.124 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:25.124 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:25.124 -07 000000591 INF: FPGA: Recv ZPIEZORD 33188
17-03-18 02:43:25.134 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:25.134 -07 000000430 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -8.4 V.
17-03-18 02:43:25.134 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36970 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36970 (-176.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36964 (-176.9 uncal um), Max = 36975 (-177.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:43:25.134 -07 000000430 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36970, posNoise = 5, negNoise = 6
17-03-18 02:43:25.134 -07 000000430 INF: Z Motor: After move to -0.177821, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:25.134 -07 000000430 INF: Z Motor: Settle wait time = 1445 ms, measure time = 108 ms (allowed 150 ms), total time = 1553 ms
17-03-18 02:43:25.134 -07 000000430 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:25.184 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:43:25.184 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:25.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:25.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:25.184 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:25.184 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:25.184 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:25.184 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:25.184 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:25.184 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:25.194 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:43:25.194 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:25.194 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:43:25.194 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:43:25.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:25.244 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:25.544 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:25.544 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:25.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:25.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592212048, 0x0, 559484976) start.
17-03-18 02:43:25.584 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:25.584 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:25.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:43:25.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 592212048, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:43:25.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:25.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:43:25.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:43:25.784 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:25.784 -07 000000590 INF: Autofocus start
17-03-18 02:43:25.784 -07 000000590 INF: MeasureProfile start
17-03-18 02:43:25.784 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:25.794 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:43:25.794 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:25.794 -07 000000590 INF: MeasureProfile done
17-03-18 02:43:25.794 -07 000000590 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:43:25.794 -07 000000590 INF: Autofocus finished
17-03-18 02:43:25.994 -07 000000467 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:25.994 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:43:25.994 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177826474892038. ----------
17-03-18 02:43:25.994 -07 000000610 INF: Cycle	103	Tile	2	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:26.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37395, sync = True, waitForSettling = True)
17-03-18 02:43:26.004 -07 000000610 INF: Z Motor: Moving to -0.171183 mm, started at -0.177826 mm, distance = 6.64 um
17-03-18 02:43:26.004 -07 000000610 INF: FPGA: Xmit ZDACW 37395\n [Z Motor]
17-03-18 02:43:26.004 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:43:26.014 -07 000000610 INF: FPGA: 'ZDACW 37395' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:26.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:26.014 -07 000000618 INF: FPGA: Recv ZDACR 37395
17-03-18 02:43:26.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:26.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.174 -07 000000461 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:43:26.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:26.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.184 -07 000000591 INF: FPGA: Recv ZSGSRD 35941
17-03-18 02:43:26.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.194 -07 000000569 INF: FPGA: Recv ZSGSRD 35935
17-03-18 02:43:26.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.204 -07 000000462 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:43:26.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.214 -07 000000576 INF: FPGA: Recv ZSGSRD 35942
17-03-18 02:43:26.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.224 -07 000000626 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:43:26.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.234 -07 000000590 INF: FPGA: Recv ZSGSRD 35937
17-03-18 02:43:26.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.244 -07 000000502 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:43:26.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.254 -07 000000424 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:43:26.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:26.264 -07 000000430 INF: FPGA: Recv ZSGSRD 35941
17-03-18 02:43:26.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:26.274 -07 000000444 INF: FPGA: Recv ZPIEZORD 31807
17-03-18 02:43:26.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:26.284 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.1 V.
17-03-18 02:43:26.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35938 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35936 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35934 (-170.3 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:43:26.284 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35938, posNoise = 4, negNoise = 4
17-03-18 02:43:26.284 -07 000000610 INF: Z Motor: After move to -0.171183, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:26.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:43:26.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:26.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:26.284 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:26.284 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:26.284 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:26.284 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:26.284 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:26.284 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:26.284 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:26.284 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:26.284 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:43:26.284 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:26.294 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:26.294 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:26.294 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:43:26.294 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:26.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:43:26.304 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:43:26.304 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:43:26.304 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:43:26.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37572 150\n [Camera]
17-03-18 02:43:26.374 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.019446,
17-03-18 02:43:26.504 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:26.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:26.514 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:43:26.914 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:26.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:26.914 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:26.914 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:26.914 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:26.914 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) start.
17-03-18 02:43:26.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:26.914 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:26.914 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:26.914 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) start.
17-03-18 02:43:27.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37572 783
17-03-18 02:43:27.254 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:27.304 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1169999632, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:43:27.304 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:43:27.304 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:27.304 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1134577368, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:43:27.304 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:43:27.304 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:27.304 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:27.304 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:27.304 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:43:27.314 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:43:27.444 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:43:27.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:43:27.444 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:27.444 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:27.444 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:43:27.444 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:43:27.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:43:27.444 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:27.444 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:27.444 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:43:27.634 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:43:27.634 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:43:27.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37572 150' command took 2 ms to send, 1314 ms to get response, and 1323 ms overall
17-03-18 02:43:27.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:27.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.17119668796174. ------
17-03-18 02:43:27.754 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:27.754 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17799 mm
17-03-18 02:43:27.754 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:27.754 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:27.764 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:43:27.764 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:27.764 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:43:27.764 -07 000000424 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:43:27.764 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38882, sync = True, waitForSettling = False)
17-03-18 02:43:27.764 -07 000000512 INF: Z Motor: Moving to -0.177990 mm, started at -0.171197 mm, distance = -6.79 um
17-03-18 02:43:27.774 -07 000000512 INF: FPGA: Xmit ZDACW 38882\n [Z Motor]
17-03-18 02:43:27.774 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:43:27.784 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:27.784 -07 000000512 INF: FPGA: 'ZDACW 38882' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:43:27.784 -07 000000430 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:43:27.794 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:43:27.794 -07 000000424 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:27.794 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:27.794 -07 000000590 INF: FPGA: Recv ZDACR 38882
17-03-18 02:43:27.794 -07 000000424 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:43:27.794 -07 000000424 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:43:27.804 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:43:27.804 -07 000000512 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:43:27.804 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:43:27.844 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:43:27.844 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:43:27.844 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:27.844 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:43:27.844 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:43:27.844 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:27.854 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:27.854 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:43:27.854 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:43:27.854 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:43:27.964 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:27.964 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:43:28.174 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:43:28.174 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:43:28.224 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:28.224 -07 000000579 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:43:28.234 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:28.234 -07 000000424 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:28.234 -07 000000424 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:43:28.234 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.182 mm/sec
17-03-18 02:43:29.184 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:29.184 -07 000000590 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:43:29.194 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:29.194 -07 000000424 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:29.214 -07 000000424 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:29.214 -07 000000424 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:43:29.214 -07 000000424 INF: Y Motor: Moved to 61.5630 after 1458 ms (table move)
17-03-18 02:43:29.224 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177990 mm (DAC = 38882)
17-03-18 02:43:29.224 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.224 -07 000000629 INF: FPGA: Recv ZSGSRD 36997
17-03-18 02:43:29.234 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:43:29.234 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.234 -07 000000502 INF: FPGA: Recv ZSGSRD 36994
17-03-18 02:43:29.244 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.244 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.244 -07 000000626 INF: FPGA: Recv ZSGSRD 36997
17-03-18 02:43:29.254 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.254 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.254 -07 000000467 INF: FPGA: Recv ZSGSRD 37008
17-03-18 02:43:29.264 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.264 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.264 -07 000000461 INF: FPGA: Recv ZSGSRD 36996
17-03-18 02:43:29.274 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.274 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.274 -07 000000629 INF: FPGA: Recv ZSGSRD 36995
17-03-18 02:43:29.284 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.284 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.284 -07 000000579 INF: FPGA: Recv ZSGSRD 36994
17-03-18 02:43:29.294 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.294 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.294 -07 000000424 INF: FPGA: Recv ZSGSRD 36989
17-03-18 02:43:29.304 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.304 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.304 -07 000000462 INF: FPGA: Recv ZSGSRD 36995
17-03-18 02:43:29.314 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.314 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:29.314 -07 000000461 INF: FPGA: Recv ZSGSRD 37002
17-03-18 02:43:29.324 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.324 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:29.324 -07 000000561 INF: FPGA: Recv ZPIEZORD 33185
17-03-18 02:43:29.334 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:29.334 -07 000000444 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.933 V. Piezo Error = -8.4 V.
17-03-18 02:43:29.334 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36997 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36996 (-177.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36989 (-177.1 uncal um), Max = 37008 (-177.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:43:29.334 -07 000000444 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36997, posNoise = 11, negNoise = 8
17-03-18 02:43:29.334 -07 000000444 INF: Z Motor: After move to -0.177990, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:29.334 -07 000000444 INF: Z Motor: Settle wait time = 1460 ms, measure time = 109 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:43:29.334 -07 000000444 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:29.384 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:43:29.384 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:29.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:29.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:29.384 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:29.384 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:29.384 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:29.384 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:29.384 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:43:29.384 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:29.394 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:29.394 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:29.404 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:43:29.404 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:43:29.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:29.454 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:29.754 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:29.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:29.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:29.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:43:29.794 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:29.794 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:29.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 387 ms overall
17-03-18 02:43:29.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:43:29.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:29.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:43:29.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:43:29.894 -07 000000462 INF: Autofocus start
17-03-18 02:43:29.894 -07 000000462 INF: MeasureProfile start
17-03-18 02:43:29.894 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:29.894 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:29.904 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:43:29.904 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:29.904 -07 000000462 INF: MeasureProfile done
17-03-18 02:43:29.904 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:43:29.904 -07 000000462 INF: Autofocus finished
17-03-18 02:43:30.104 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:30.104 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:43:30.104 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.177999928619865. ----------
17-03-18 02:43:30.104 -07 000000610 INF: Cycle	103	Tile	3	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:30.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37361, sync = True, waitForSettling = True)
17-03-18 02:43:30.114 -07 000000610 INF: Z Motor: Moving to -0.171028 mm, started at -0.178000 mm, distance = 6.97 um
17-03-18 02:43:30.114 -07 000000610 INF: FPGA: Xmit ZDACW 37361\n [Z Motor]
17-03-18 02:43:30.114 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:43:30.124 -07 000000610 INF: FPGA: 'ZDACW 37361' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:43:30.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:30.124 -07 000000501 INF: FPGA: Recv ZDACR 37361
17-03-18 02:43:30.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:30.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.284 -07 000000430 INF: FPGA: Recv ZSGSRD 35921
17-03-18 02:43:30.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:30.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.294 -07 000000502 INF: FPGA: Recv ZSGSRD 35919
17-03-18 02:43:30.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.304 -07 000000579 INF: FPGA: Recv ZSGSRD 35914
17-03-18 02:43:30.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.314 -07 000000467 INF: FPGA: Recv ZSGSRD 35912
17-03-18 02:43:30.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.324 -07 000000462 INF: FPGA: Recv ZSGSRD 35909
17-03-18 02:43:30.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.344 -07 000000576 INF: FPGA: Recv ZSGSRD 35920
17-03-18 02:43:30.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:30.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.344 -07 000000569 INF: FPGA: Recv ZSGSRD 35917
17-03-18 02:43:30.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.354 -07 000000579 INF: FPGA: Recv ZSGSRD 35913
17-03-18 02:43:30.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.364 -07 000000461 INF: FPGA: Recv ZSGSRD 35917
17-03-18 02:43:30.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:30.374 -07 000000501 INF: FPGA: Recv ZSGSRD 35910
17-03-18 02:43:30.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:30.384 -07 000000430 INF: FPGA: Recv ZPIEZORD 31806
17-03-18 02:43:30.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:30.394 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.1 V.
17-03-18 02:43:30.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35915 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35909 (-170.1 uncal um), Max = 35921 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:43:30.394 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35915, posNoise = 6, negNoise = 6
17-03-18 02:43:30.394 -07 000000610 INF: Z Motor: After move to -0.171028, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:30.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:43:30.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:30.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:30.394 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:30.394 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:30.394 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:30.394 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:30.394 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:30.394 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:30.404 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:30.404 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:30.404 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:43:30.404 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:30.404 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:43:30.404 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:30.404 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:43:30.404 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:30.414 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:43:30.414 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:43:30.414 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:43:30.414 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:43:30.414 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37538 150\n [Camera]
17-03-18 02:43:30.614 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:43:31.014 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:31.014 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:31.014 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:31.014 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:31.014 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:31.014 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:31.014 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:31.014 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:43:31.024 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:31.024 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:43:31.204 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37538 783
17-03-18 02:43:31.354 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:31.394 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:43:31.394 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:43:31.394 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:31.394 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:43:31.394 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:43:31.404 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:31.404 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:43:31.404 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:31.404 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:43:31.414 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:43:31.504 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:31.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:31.554 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:43:31.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:43:31.554 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:31.554 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:31.554 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:43:31.554 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:43:31.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:43:31.554 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:31.554 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:31.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:43:31.734 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.989471,
17-03-18 02:43:31.734 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:43:31.744 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:43:31.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37538 150' command took 2 ms to send, 1320 ms to get response, and 1323 ms overall
17-03-18 02:43:31.744 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:31.744 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.17104893108248. ------
17-03-18 02:43:31.744 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17726 mm
17-03-18 02:43:31.744 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:31.744 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:43:31.744 -07 000000430 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 02:43:31.754 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38723, sync = True, waitForSettling = False)
17-03-18 02:43:31.754 -07 000000626 INF: Z Motor: Moving to -0.177263 mm, started at -0.171049 mm, distance = -6.21 um
17-03-18 02:43:31.754 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:31.754 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:31.764 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:43:31.764 -07 000000626 INF: FPGA: Xmit ZDACW 38723\n [Z Motor]
17-03-18 02:43:31.764 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:43:31.774 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:31.774 -07 000000626 INF: FPGA: 'ZDACW 38723' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:43:31.774 -07 000000461 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:43:31.784 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:43:31.784 -07 000000430 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:31.784 -07 000000430 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:43:31.784 -07 000000430 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:43:31.794 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:31.804 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:31.804 -07 000000444 INF: FPGA: Recv ZDACR 38723
17-03-18 02:43:31.814 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:43:31.814 -07 000000626 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-18 02:43:31.814 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:43:31.944 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:43:31.944 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:43:31.944 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:31.944 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:43:31.944 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:43:31.944 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:31.944 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:31.944 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:31.944 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:43:31.954 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:43:31.994 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:31.994 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 02:43:32.184 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:43:32.184 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-18 02:43:32.234 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:32.234 -07 000000561 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:43:32.244 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:32.244 -07 000000430 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:32.244 -07 000000430 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:43:32.244 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.840 mm, average velocity = 2.078 mm/sec
17-03-18 02:43:33.194 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:33.194 -07 000000606 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:43:33.204 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.204 -07 000000430 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:33.224 -07 000000430 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:33.224 -07 000000430 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:43:33.224 -07 000000430 INF: Y Motor: Moved to 62.3950 after 1479 ms (table move)
17-03-18 02:43:33.234 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177263 mm (DAC = 38723)
17-03-18 02:43:33.234 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.234 -07 000000467 INF: FPGA: Recv ZSGSRD 36880
17-03-18 02:43:33.244 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:33.244 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.244 -07 000000606 INF: FPGA: Recv ZSGSRD 36885
17-03-18 02:43:33.254 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.254 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.264 -07 000000501 INF: FPGA: Recv ZSGSRD 36890
17-03-18 02:43:33.264 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:43:33.264 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.264 -07 000000576 INF: FPGA: Recv ZSGSRD 36883
17-03-18 02:43:33.274 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.274 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.274 -07 000000629 INF: FPGA: Recv ZSGSRD 36885
17-03-18 02:43:33.284 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.284 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.284 -07 000000430 INF: FPGA: Recv ZSGSRD 36874
17-03-18 02:43:33.294 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.294 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.294 -07 000000461 INF: FPGA: Recv ZSGSRD 36880
17-03-18 02:43:33.304 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.304 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.304 -07 000000579 INF: FPGA: Recv ZSGSRD 36880
17-03-18 02:43:33.314 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.314 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.314 -07 000000569 INF: FPGA: Recv ZSGSRD 36878
17-03-18 02:43:33.324 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.324 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:33.324 -07 000000579 INF: FPGA: Recv ZSGSRD 36888
17-03-18 02:43:33.334 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.334 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:33.334 -07 000000455 INF: FPGA: Recv ZPIEZORD 33088
17-03-18 02:43:33.344 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:33.344 -07 000000618 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.909 V. Piezo Error = -8.4 V.
17-03-18 02:43:33.344 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36882 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36882 (-176.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36874 (-176.3 uncal um), Max = 36890 (-176.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:43:33.344 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36882, posNoise = 8, negNoise = 8
17-03-18 02:43:33.344 -07 000000618 INF: Z Motor: After move to -0.177263, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:33.344 -07 000000618 INF: Z Motor: Settle wait time = 1482 ms, measure time = 108 ms (allowed 150 ms), total time = 1590 ms
17-03-18 02:43:33.344 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:33.394 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1644 ms
17-03-18 02:43:33.394 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:33.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:33.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:33.394 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:33.394 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:33.394 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:33.394 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:33.394 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:43:33.394 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:33.404 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:33.404 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:33.404 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:43:33.404 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:43:33.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:33.454 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:33.754 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:33.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:33.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:33.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:43:33.794 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:33.794 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:33.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:43:33.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:43:33.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:33.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:43:33.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:43:33.894 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:33.894 -07 000000576 INF: Autofocus start
17-03-18 02:43:33.894 -07 000000576 INF: MeasureProfile start
17-03-18 02:43:33.894 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:33.904 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:33.904 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:33.904 -07 000000576 INF: MeasureProfile done
17-03-18 02:43:33.904 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:43:33.904 -07 000000576 INF: Autofocus finished
17-03-18 02:43:34.104 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:34.104 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:43:34.104 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177261144223563. ----------
17-03-18 02:43:34.104 -07 000000610 INF: Cycle	103	Tile	4	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:34.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37256, sync = True, waitForSettling = True)
17-03-18 02:43:34.114 -07 000000610 INF: Z Motor: Moving to -0.170547 mm, started at -0.177261 mm, distance = 6.71 um
17-03-18 02:43:34.114 -07 000000610 INF: FPGA: Xmit ZDACW 37256\n [Z Motor]
17-03-18 02:43:34.114 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:43:34.124 -07 000000610 INF: FPGA: 'ZDACW 37256' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:34.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:34.124 -07 000000461 INF: FPGA: Recv ZDACR 37256
17-03-18 02:43:34.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:34.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:34.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.284 -07 000000512 INF: FPGA: Recv ZSGSRD 35835
17-03-18 02:43:34.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:34.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.294 -07 000000591 INF: FPGA: Recv ZSGSRD 35843
17-03-18 02:43:34.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:34.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.304 -07 000000618 INF: FPGA: Recv ZSGSRD 35836
17-03-18 02:43:34.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:34.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.314 -07 000000579 INF: FPGA: Recv ZSGSRD 35842
17-03-18 02:43:34.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:34.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.324 -07 000000424 INF: FPGA: Recv ZSGSRD 35839
17-03-18 02:43:34.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:34.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.334 -07 000000561 INF: FPGA: Recv ZSGSRD 35835
17-03-18 02:43:34.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:34.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.344 -07 000000502 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:43:34.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 13 ms overall
17-03-18 02:43:34.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.354 -07 000000462 INF: FPGA: Recv ZSGSRD 35847
17-03-18 02:43:34.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:43:34.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.364 -07 000000579 INF: FPGA: Recv ZSGSRD 35837
17-03-18 02:43:34.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:34.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:34.374 -07 000000424 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:43:34.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:34.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:34.384 -07 000000455 INF: FPGA: Recv ZPIEZORD 31719
17-03-18 02:43:34.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:34.394 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.685 V. Piezo Error = -9.1 V.
17-03-18 02:43:34.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35840 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35840 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35835 (-169.7 uncal um), Max = 35847 (-169.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:43:34.394 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35840, posNoise = 7, negNoise = 5
17-03-18 02:43:34.394 -07 000000610 INF: Z Motor: After move to -0.170547, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:34.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:43:34.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:34.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:34.394 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:34.394 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:34.394 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:34.394 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:34.394 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:34.394 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:34.404 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 02:43:34.404 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:34.404 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:43:34.404 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:34.404 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:34.404 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:34.404 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:43:34.404 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:34.414 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:43:34.414 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:43:34.414 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:43:34.414 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:43:34.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37433 150\n [Camera]
17-03-18 02:43:34.624 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:43:35.024 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:35.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:35.024 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:35.024 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:35.024 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:43:35.024 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:35.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:35.024 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:35.024 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:35.024 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:43:35.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37433 783
17-03-18 02:43:35.364 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:35.424 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:43:35.424 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:43:35.424 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:35.424 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:43:35.424 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:43:35.424 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:35.434 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:35.434 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:43:35.434 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:35.444 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:43:35.554 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:43:35.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:43:35.554 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:35.554 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:35.554 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:43:35.564 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:43:35.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:43:35.564 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:35.564 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:35.564 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:43:35.744 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:43:35.754 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:43:35.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37433 150' command took 2 ms to send, 1321 ms to get response, and 1326 ms overall
17-03-18 02:43:35.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:35.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170567115171848. ------
17-03-18 02:43:35.754 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:35.754 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17711 mm
17-03-18 02:43:35.754 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:35.754 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:35.754 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:43:35.754 -07 000000424 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:43:35.884 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:35.884 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38689, sync = True, waitForSettling = False)
17-03-18 02:43:35.884 -07 000000591 INF: Z Motor: Moving to -0.177107 mm, started at -0.170567 mm, distance = -6.54 um
17-03-18 02:43:35.884 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 02:43:35.884 -07 000000444 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:43:35.894 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:43:35.894 -07 000000424 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:35.894 -07 000000424 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:43:35.894 -07 000000424 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:43:35.894 -07 000000591 INF: FPGA: Xmit ZDACW 38689\n [Z Motor]
17-03-18 02:43:35.894 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:43:35.904 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:35.904 -07 000000591 INF: FPGA: 'ZDACW 38689' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:43:35.914 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:43:35.924 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:35.924 -07 000000461 INF: FPGA: Recv ZDACR 38689
17-03-18 02:43:35.934 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:43:35.934 -07 000000591 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:43:35.964 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:43:35.964 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:43:35.964 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:35.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:43:35.964 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:43:35.964 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:35.964 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:35.974 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:43:35.974 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:43:35.974 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:43:36.104 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:36.104 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 02:43:36.284 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:43:36.284 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 02:43:36.334 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:36.334 -07 000000591 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:43:36.344 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:43:36.344 -07 000000424 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:36.344 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:43:36.344 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-18 02:43:36.504 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:36.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:37.154 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.997626,
17-03-18 02:43:37.294 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:37.294 -07 000000629 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:43:37.304 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.304 -07 000000424 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:37.334 -07 000000424 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:37.334 -07 000000424 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:43:37.334 -07 000000424 INF: Y Motor: Moved to 63.2236 after 1571 ms (table move)
17-03-18 02:43:37.334 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177107 mm (DAC = 38689)
17-03-18 02:43:37.334 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.334 -07 000000461 INF: FPGA: Recv ZSGSRD 36865
17-03-18 02:43:37.344 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:43:37.344 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.344 -07 000000444 INF: FPGA: Recv ZSGSRD 36861
17-03-18 02:43:37.354 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.354 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.354 -07 000000455 INF: FPGA: Recv ZSGSRD 36861
17-03-18 02:43:37.364 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.364 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.364 -07 000000501 INF: FPGA: Recv ZSGSRD 36856
17-03-18 02:43:37.374 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.374 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.374 -07 000000462 INF: FPGA: Recv ZSGSRD 36863
17-03-18 02:43:37.384 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.384 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.384 -07 000000461 INF: FPGA: Recv ZSGSRD 36860
17-03-18 02:43:37.394 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.394 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.394 -07 000000561 INF: FPGA: Recv ZSGSRD 36849
17-03-18 02:43:37.404 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.404 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.404 -07 000000606 INF: FPGA: Recv ZSGSRD 36861
17-03-18 02:43:37.414 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.414 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.414 -07 000000501 INF: FPGA: Recv ZSGSRD 36853
17-03-18 02:43:37.424 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.424 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:37.424 -07 000000626 INF: FPGA: Recv ZSGSRD 36868
17-03-18 02:43:37.434 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.434 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:37.434 -07 000000430 INF: FPGA: Recv ZPIEZORD 33065
17-03-18 02:43:37.444 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:37.444 -07 000000618 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.4 V.
17-03-18 02:43:37.444 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36860 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36861 (-176.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36849 (-176.2 uncal um), Max = 36868 (-176.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:43:37.444 -07 000000618 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36860, posNoise = 8, negNoise = 11
17-03-18 02:43:37.444 -07 000000618 INF: Z Motor: After move to -0.177107, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:37.444 -07 000000618 INF: Z Motor: Settle wait time = 1452 ms, measure time = 106 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:43:37.444 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:37.494 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1733 ms
17-03-18 02:43:37.494 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:37.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:37.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:37.494 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:37.494 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:37.494 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:37.494 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:37.494 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:43:37.494 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:37.504 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:37.504 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:37.504 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:43:37.504 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:43:37.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:37.554 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:37.854 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:37.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:37.854 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:37.854 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:43:37.894 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:37.894 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:37.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:43:37.974 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:43:37.974 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:37.974 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:43:37.974 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:43:37.994 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:37.994 -07 000000629 INF: Autofocus start
17-03-18 02:43:37.994 -07 000000629 INF: MeasureProfile start
17-03-18 02:43:37.994 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:38.004 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:43:38.004 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:38.004 -07 000000629 INF: MeasureProfile done
17-03-18 02:43:38.004 -07 000000629 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:43:38.004 -07 000000629 INF: Autofocus finished
17-03-18 02:43:38.204 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:38.204 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:43:38.204 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177119811556444. ----------
17-03-18 02:43:38.214 -07 000000610 INF: Cycle	103	Tile	5	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:38.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37204, sync = True, waitForSettling = True)
17-03-18 02:43:38.214 -07 000000610 INF: Z Motor: Moving to -0.170309 mm, started at -0.177120 mm, distance = 6.81 um
17-03-18 02:43:38.214 -07 000000610 INF: FPGA: Xmit ZDACW 37204\n [Z Motor]
17-03-18 02:43:38.214 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:43:38.224 -07 000000610 INF: FPGA: 'ZDACW 37204' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:43:38.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:38.224 -07 000000462 INF: FPGA: Recv ZDACR 37204
17-03-18 02:43:38.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:38.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.384 -07 000000501 INF: FPGA: Recv ZSGSRD 35804
17-03-18 02:43:38.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:38.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.394 -07 000000629 INF: FPGA: Recv ZSGSRD 35803
17-03-18 02:43:38.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.404 -07 000000606 INF: FPGA: Recv ZSGSRD 35802
17-03-18 02:43:38.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.414 -07 000000502 INF: FPGA: Recv ZSGSRD 35803
17-03-18 02:43:38.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.424 -07 000000462 INF: FPGA: Recv ZSGSRD 35805
17-03-18 02:43:38.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.434 -07 000000626 INF: FPGA: Recv ZSGSRD 35802
17-03-18 02:43:38.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.444 -07 000000579 INF: FPGA: Recv ZSGSRD 35803
17-03-18 02:43:38.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.454 -07 000000461 INF: FPGA: Recv ZSGSRD 35801
17-03-18 02:43:38.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.464 -07 000000590 INF: FPGA: Recv ZSGSRD 35806
17-03-18 02:43:38.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:38.474 -07 000000618 INF: FPGA: Recv ZSGSRD 35806
17-03-18 02:43:38.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:38.484 -07 000000569 INF: FPGA: Recv ZPIEZORD 31639
17-03-18 02:43:38.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:38.494 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.2 V.
17-03-18 02:43:38.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35804 (-169.5 uncal um), Error = 0.8 uncal um, Median = 35803 (-169.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35801 (-169.4 uncal um), Max = 35806 (-169.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:43:38.494 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35804, posNoise = 2, negNoise = 3
17-03-18 02:43:38.494 -07 000000610 INF: Z Motor: After move to -0.170309, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:38.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:43:38.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:38.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:38.494 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:38.494 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:38.494 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:38.494 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:38.494 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:38.494 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:38.494 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:43:38.494 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:38.494 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:43:38.494 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:38.504 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:38.504 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:43:38.504 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:38.504 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:38.514 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:43:38.514 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:43:38.514 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:43:38.514 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:43:38.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37380 150\n [Camera]
17-03-18 02:43:38.714 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 02:43:39.114 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:39.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:39.114 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:39.114 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:39.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:39.114 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:39.114 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:39.114 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:43:39.124 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:39.124 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:43:39.304 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37380 783
17-03-18 02:43:39.454 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:39.504 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:43:39.514 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:43:39.514 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:39.514 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:43:39.514 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:43:39.514 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:39.514 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:43:39.514 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:43:39.514 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:43:39.524 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:43:39.644 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:43:39.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:43:39.644 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:39.644 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:39.644 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:43:39.644 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:43:39.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:43:39.644 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:39.644 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:39.644 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:43:39.834 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:43:39.834 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:43:39.834 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37380 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:43:39.834 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:39.834 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170335843534744. ------
17-03-18 02:43:39.844 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:39.844 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17669 mm
17-03-18 02:43:39.844 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:39.964 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:39.964 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-18 02:43:39.964 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:43:39.964 -07 000000576 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-18 02:43:39.964 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:39.964 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38598, sync = True, waitForSettling = False)
17-03-18 02:43:39.964 -07 000000561 INF: Z Motor: Moving to -0.176690 mm, started at -0.170336 mm, distance = -6.35 um
17-03-18 02:43:39.974 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:39.974 -07 000000606 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:43:39.984 -07 000000561 INF: FPGA: Xmit ZDACW 38598\n [Z Motor]
17-03-18 02:43:39.984 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:43:39.984 -07 000000576 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:39.984 -07 000000576 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:43:39.984 -07 000000576 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:43:39.984 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:43:39.994 -07 000000561 INF: FPGA: 'ZDACW 38598' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:43:39.994 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:39.994 -07 000000462 INF: FPGA: Recv ZDACR 38598
17-03-18 02:43:40.004 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:40.004 -07 000000561 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 02:43:40.004 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:43:40.054 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:43:40.054 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:43:40.054 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:40.054 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:43:40.054 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:43:40.054 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:40.054 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:40.054 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:43:40.054 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:40.064 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:43:40.164 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:40.164 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-18 02:43:40.374 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:43:40.374 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:43:40.424 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:40.424 -07 000000569 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:43:40.434 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:43:40.434 -07 000000576 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:40.434 -07 000000576 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 02:43:40.434 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 02:43:41.384 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:41.384 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:43:41.394 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.394 -07 000000576 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:41.414 -07 000000576 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:41.414 -07 000000576 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:43:41.414 -07 000000576 INF: Y Motor: Moved to 64.0566 after 1451 ms (table move)
17-03-18 02:43:41.414 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176690 mm (DAC = 38598)
17-03-18 02:43:41.414 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.424 -07 000000618 INF: FPGA: Recv ZSGSRD 36801
17-03-18 02:43:41.434 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:41.434 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.434 -07 000000626 INF: FPGA: Recv ZSGSRD 36795
17-03-18 02:43:41.444 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.444 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.444 -07 000000455 INF: FPGA: Recv ZSGSRD 36795
17-03-18 02:43:41.454 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.454 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.454 -07 000000569 INF: FPGA: Recv ZSGSRD 36798
17-03-18 02:43:41.464 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.464 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.464 -07 000000462 INF: FPGA: Recv ZSGSRD 36792
17-03-18 02:43:41.474 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.474 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.474 -07 000000502 INF: FPGA: Recv ZSGSRD 36791
17-03-18 02:43:41.484 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.484 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.484 -07 000000512 INF: FPGA: Recv ZSGSRD 36793
17-03-18 02:43:41.494 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.494 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.494 -07 000000455 INF: FPGA: Recv ZSGSRD 36793
17-03-18 02:43:41.504 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.504 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.504 -07 000000629 INF: FPGA: Recv ZSGSRD 36802
17-03-18 02:43:41.504 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:41.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:41.514 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.514 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:41.514 -07 000000455 INF: FPGA: Recv ZSGSRD 36788
17-03-18 02:43:41.524 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.524 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:41.524 -07 000000629 INF: FPGA: Recv ZPIEZORD 32992
17-03-18 02:43:41.534 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:41.534 -07 000000579 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.890 V. Piezo Error = -8.4 V.
17-03-18 02:43:41.534 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36795 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36794 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36788 (-175.8 uncal um), Max = 36802 (-175.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:43:41.534 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36795, posNoise = 7, negNoise = 7
17-03-18 02:43:41.534 -07 000000579 INF: Z Motor: After move to -0.176690, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:41.534 -07 000000579 INF: Z Motor: Settle wait time = 1454 ms, measure time = 111 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:43:41.534 -07 000000579 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:41.574 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-18 02:43:41.574 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:41.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:41.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:41.574 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:41.574 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:41.574 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:41.574 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:41.584 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:41.584 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:41.584 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:41.584 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:41.594 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:43:41.594 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:43:41.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:41.634 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:41.934 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:41.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:41.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:41.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:43:41.974 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:41.974 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:41.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:43:42.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:43:42.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:42.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:43:42.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:43:42.074 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:42.074 -07 000000569 INF: Autofocus start
17-03-18 02:43:42.074 -07 000000569 INF: MeasureProfile start
17-03-18 02:43:42.074 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:42.084 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:43:42.084 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:42.084 -07 000000569 INF: MeasureProfile done
17-03-18 02:43:42.084 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:43:42.084 -07 000000569 INF: Autofocus finished
17-03-18 02:43:42.284 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:42.284 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:43:42.284 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176702237767229. ----------
17-03-18 02:43:42.284 -07 000000610 INF: Cycle	103	Tile	6	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:42.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37130, sync = True, waitForSettling = True)
17-03-18 02:43:42.294 -07 000000610 INF: Z Motor: Moving to -0.169970 mm, started at -0.176702 mm, distance = 6.73 um
17-03-18 02:43:42.294 -07 000000610 INF: FPGA: Xmit ZDACW 37130\n [Z Motor]
17-03-18 02:43:42.294 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:43:42.304 -07 000000610 INF: FPGA: 'ZDACW 37130' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:43:42.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:42.304 -07 000000502 INF: FPGA: Recv ZDACR 37130
17-03-18 02:43:42.314 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:42.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:42.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.464 -07 000000455 INF: FPGA: Recv ZSGSRD 35752
17-03-18 02:43:42.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:42.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.474 -07 000000569 INF: FPGA: Recv ZSGSRD 35750
17-03-18 02:43:42.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:42.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.484 -07 000000618 INF: FPGA: Recv ZSGSRD 35747
17-03-18 02:43:42.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:42.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.494 -07 000000576 INF: FPGA: Recv ZSGSRD 35744
17-03-18 02:43:42.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:42.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.514 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.994908,
17-03-18 02:43:42.514 -07 000000618 INF: FPGA: Recv ZSGSRD 35748
17-03-18 02:43:42.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:43:42.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.544 -07 000000626 INF: FPGA: Recv ZSGSRD 35755
17-03-18 02:43:42.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:43:42.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.564 -07 000000455 INF: FPGA: Recv ZSGSRD 35748
17-03-18 02:43:42.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:43:42.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.584 -07 000000501 INF: FPGA: Recv ZSGSRD 35744
17-03-18 02:43:42.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:43:42.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.594 -07 000000430 INF: FPGA: Recv ZSGSRD 35749
17-03-18 02:43:42.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:42.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:42.604 -07 000000424 INF: FPGA: Recv ZSGSRD 35747
17-03-18 02:43:42.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:42.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:42.614 -07 000000590 INF: FPGA: Recv ZPIEZORD 31594
17-03-18 02:43:42.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:42.624 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.2 V.
17-03-18 02:43:42.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35748 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35748 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35744 (-169.1 uncal um), Max = 35755 (-169.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:43:42.624 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35748, posNoise = 7, negNoise = 4
17-03-18 02:43:42.624 -07 000000610 INF: Z Motor: After move to -0.169970, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:42.624 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-18 02:43:42.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:42.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:42.624 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:42.624 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:42.624 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:42.624 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:42.624 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:42.624 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:42.624 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:43:42.624 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:42.624 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:43:42.624 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:42.634 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:43:42.634 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:42.634 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:43:42.634 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:42.644 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:43:42.644 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:43:42.644 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:43:42.644 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:43:42.644 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37307 150\n [Camera]
17-03-18 02:43:42.844 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:43:43.244 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:43.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:43.244 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:43.244 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:43.244 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:43.244 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:43.244 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:43.244 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:43:43.244 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:43.244 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:43:43.434 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37307 783
17-03-18 02:43:43.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:43.624 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:43:43.624 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:43:43.624 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:43.634 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:43:43.634 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:43:43.634 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:43.634 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:43.634 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:43.634 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:43:43.644 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:43:43.774 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:43:43.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:43:43.774 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:43.774 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:43.774 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:43:43.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:43:43.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:43:43.774 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:43.774 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:43.774 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:43:43.964 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:43:43.964 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:43:43.964 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37307 150' command took 2 ms to send, 1316 ms to get response, and 1324 ms overall
17-03-18 02:43:43.964 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:43.964 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169976087654806. ------
17-03-18 02:43:43.974 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:43.974 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17643 mm
17-03-18 02:43:43.974 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:43.974 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:43:43.974 -07 000000606 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 02:43:43.974 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:43.974 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38541, sync = True, waitForSettling = False)
17-03-18 02:43:43.974 -07 000000461 INF: Z Motor: Moving to -0.176429 mm, started at -0.169976 mm, distance = -6.45 um
17-03-18 02:43:43.984 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:43.984 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:43.984 -07 000000576 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:43:43.994 -07 000000461 INF: FPGA: Xmit ZDACW 38541\n [Z Motor]
17-03-18 02:43:43.994 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:43:43.994 -07 000000606 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:43.994 -07 000000606 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:43:43.994 -07 000000606 INF: Y Motor: Moving 1338 steps-13
17-03-18 02:43:43.994 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:43:44.004 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:44.004 -07 000000461 INF: FPGA: 'ZDACW 38541' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:43:44.014 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:43:44.024 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:44.024 -07 000000455 INF: FPGA: Recv ZDACR 38541
17-03-18 02:43:44.034 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:43:44.034 -07 000000461 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:43:44.184 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:43:44.184 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:43:44.184 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:44.184 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:43:44.184 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:43:44.184 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:44.184 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:44.184 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:43:44.184 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:43:44.194 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:43:44.204 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:44.204 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:43:44.394 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:43:44.394 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-18 02:43:44.434 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:44.434 -07 000000424 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:43:44.444 -07 000000606 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:43:44.444 -07 000000606 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:44.444 -07 000000606 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:43:44.444 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.836 mm, average velocity = 2.090 mm/sec
17-03-18 02:43:45.394 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:45.394 -07 000000462 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:43:45.404 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:45.404 -07 000000606 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:45.424 -07 000000606 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:45.424 -07 000000606 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:43:45.424 -07 000000606 INF: Y Motor: Moved to 64.8784 after 1454 ms (table move)
17-03-18 02:43:45.434 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176429 mm (DAC = 38541)
17-03-18 02:43:45.434 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.434 -07 000000626 INF: FPGA: Recv ZSGSRD 36743
17-03-18 02:43:45.444 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:45.444 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.444 -07 000000461 INF: FPGA: Recv ZSGSRD 36751
17-03-18 02:43:45.454 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.454 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.454 -07 000000569 INF: FPGA: Recv ZSGSRD 36757
17-03-18 02:43:45.464 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.464 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.464 -07 000000618 INF: FPGA: Recv ZSGSRD 36751
17-03-18 02:43:45.474 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.474 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.474 -07 000000444 INF: FPGA: Recv ZSGSRD 36752
17-03-18 02:43:45.484 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.484 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.484 -07 000000626 INF: FPGA: Recv ZSGSRD 36753
17-03-18 02:43:45.494 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.494 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.494 -07 000000461 INF: FPGA: Recv ZSGSRD 36753
17-03-18 02:43:45.504 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.504 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.504 -07 000000606 INF: FPGA: Recv ZSGSRD 36758
17-03-18 02:43:45.514 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.514 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.514 -07 000000618 INF: FPGA: Recv ZSGSRD 36746
17-03-18 02:43:45.524 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.524 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:45.524 -07 000000444 INF: FPGA: Recv ZSGSRD 36753
17-03-18 02:43:45.534 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.534 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:45.534 -07 000000626 INF: FPGA: Recv ZPIEZORD 32916
17-03-18 02:43:45.544 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:45.544 -07 000000501 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.5 V.
17-03-18 02:43:45.544 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36752 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36752 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36743 (-175.5 uncal um), Max = 36758 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:43:45.544 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36752, posNoise = 6, negNoise = 9
17-03-18 02:43:45.544 -07 000000501 INF: Z Motor: After move to -0.176429, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:45.544 -07 000000501 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:43:45.544 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:45.594 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:43:45.594 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:45.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:45.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:45.594 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:45.594 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:45.594 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:45.594 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:45.604 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:45.604 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:45.604 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:45.604 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:45.614 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:43:45.614 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:43:45.614 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:45.654 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:45.954 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:45.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:45.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:45.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:43:45.994 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:45.994 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:45.994 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:43:46.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:43:46.074 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:46.074 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:43:46.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:43:46.094 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:46.094 -07 000000591 INF: Autofocus start
17-03-18 02:43:46.094 -07 000000591 INF: MeasureProfile start
17-03-18 02:43:46.094 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:46.104 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:46.104 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:46.104 -07 000000591 INF: MeasureProfile done
17-03-18 02:43:46.104 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:43:46.104 -07 000000591 INF: Autofocus finished
17-03-18 02:43:46.304 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:46.304 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:43:46.304 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176425996645134. ----------
17-03-18 02:43:46.314 -07 000000610 INF: Cycle	103	Tile	7	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:46.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37038, sync = True, waitForSettling = True)
17-03-18 02:43:46.314 -07 000000610 INF: Z Motor: Moving to -0.169549 mm, started at -0.176426 mm, distance = 6.88 um
17-03-18 02:43:46.314 -07 000000610 INF: FPGA: Xmit ZDACW 37038\n [Z Motor]
17-03-18 02:43:46.314 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:43:46.324 -07 000000610 INF: FPGA: 'ZDACW 37038' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:46.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:46.324 -07 000000430 INF: FPGA: Recv ZDACR 37038
17-03-18 02:43:46.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.344 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:46.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.504 -07 000000629 INF: FPGA: Recv ZSGSRD 35686
17-03-18 02:43:46.504 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:46.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:46.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:46.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.514 -07 000000512 INF: FPGA: Recv ZSGSRD 35687
17-03-18 02:43:46.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.524 -07 000000467 INF: FPGA: Recv ZSGSRD 35685
17-03-18 02:43:46.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.534 -07 000000590 INF: FPGA: Recv ZSGSRD 35686
17-03-18 02:43:46.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.544 -07 000000461 INF: FPGA: Recv ZSGSRD 35682
17-03-18 02:43:46.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.554 -07 000000618 INF: FPGA: Recv ZSGSRD 35677
17-03-18 02:43:46.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.564 -07 000000590 INF: FPGA: Recv ZSGSRD 35678
17-03-18 02:43:46.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.574 -07 000000561 INF: FPGA: Recv ZSGSRD 35683
17-03-18 02:43:46.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.584 -07 000000569 INF: FPGA: Recv ZSGSRD 35681
17-03-18 02:43:46.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:46.594 -07 000000424 INF: FPGA: Recv ZSGSRD 35683
17-03-18 02:43:46.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:46.604 -07 000000618 INF: FPGA: Recv ZPIEZORD 31503
17-03-18 02:43:46.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:46.614 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.2 V.
17-03-18 02:43:46.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35683 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35683 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35677 (-168.6 uncal um), Max = 35687 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:43:46.614 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35683, posNoise = 4, negNoise = 6
17-03-18 02:43:46.614 -07 000000610 INF: Z Motor: After move to -0.169549, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:46.614 -07 000000610 INF: Z Motor: MoveAbsStepped took 297 ms)
17-03-18 02:43:46.614 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:46.614 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:46.614 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:46.614 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:46.614 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:46.614 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:46.614 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:46.614 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:46.614 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:46.614 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:46.614 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:43:46.614 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:46.614 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:43:46.624 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:46.624 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:43:46.624 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:46.624 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:43:46.624 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:43:46.624 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:43:46.624 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:43:46.634 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37215 150\n [Camera]
17-03-18 02:43:46.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:43:47.234 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:47.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:47.234 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:47.234 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:47.234 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:43:47.234 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:47.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:47.234 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:47.234 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:47.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:43:47.424 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37215 783
17-03-18 02:43:47.574 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:47.634 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:43:47.634 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:43:47.634 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:47.634 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:43:47.634 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:43:47.634 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:47.634 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:47.634 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:43:47.644 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:47.644 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:43:47.764 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:43:47.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:43:47.764 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:47.764 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:47.764 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:43:47.764 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:43:47.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:43:47.764 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:47.764 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:47.764 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:43:47.904 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.014009,
17-03-18 02:43:48.024 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:43:48.024 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:43:48.024 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37215 150' command took 2 ms to send, 1382 ms to get response, and 1389 ms overall
17-03-18 02:43:48.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:48.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169558513865591. ------
17-03-18 02:43:48.024 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17605 mm
17-03-18 02:43:48.024 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:48.034 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:48.034 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:43:48.034 -07 000000462 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:43:48.034 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38457, sync = True, waitForSettling = False)
17-03-18 02:43:48.034 -07 000000467 INF: Z Motor: Moving to -0.176045 mm, started at -0.169559 mm, distance = -6.49 um
17-03-18 02:43:48.034 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:48.044 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:48.054 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:48.054 -07 000000579 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:43:48.064 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:43:48.064 -07 000000462 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:48.064 -07 000000462 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:43:48.064 -07 000000462 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:43:48.064 -07 000000467 INF: FPGA: Xmit ZDACW 38457\n [Z Motor]
17-03-18 02:43:48.064 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:43:48.074 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:48.074 -07 000000467 INF: FPGA: 'ZDACW 38457' command took 1 ms to send, 0 ms to get response, and 36 ms overall
17-03-18 02:43:48.094 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:43:48.104 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:48.104 -07 000000444 INF: FPGA: Recv ZDACR 38457
17-03-18 02:43:48.114 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:43:48.114 -07 000000467 INF: Z Motor: MoveAbsStepped took 77 ms (did NOT wait for settling yet))
17-03-18 02:43:48.164 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:43:48.164 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:43:48.164 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:48.164 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:43:48.174 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:43:48.174 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:48.174 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:48.174 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:43:48.174 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:43:48.184 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:43:48.274 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:48.274 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-18 02:43:48.464 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:43:48.464 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 407 ms overall
17-03-18 02:43:48.514 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:48.514 -07 000000590 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:43:48.524 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:48.524 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:48.524 -07 000000462 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:43:48.524 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.844 mm, average velocity = 2.074 mm/sec
17-03-18 02:43:49.474 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:49.474 -07 000000579 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:43:49.484 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.484 -07 000000462 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:49.514 -07 000000462 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:49.514 -07 000000462 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:43:49.514 -07 000000462 INF: Y Motor: Moved to 65.7134 after 1480 ms (table move)
17-03-18 02:43:49.514 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176045 mm (DAC = 38457)
17-03-18 02:43:49.514 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.514 -07 000000467 INF: FPGA: Recv ZSGSRD 36693
17-03-18 02:43:49.524 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:43:49.524 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.524 -07 000000512 INF: FPGA: Recv ZSGSRD 36702
17-03-18 02:43:49.534 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.534 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.534 -07 000000430 INF: FPGA: Recv ZSGSRD 36693
17-03-18 02:43:49.544 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.544 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.544 -07 000000424 INF: FPGA: Recv ZSGSRD 36694
17-03-18 02:43:49.554 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.554 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.554 -07 000000501 INF: FPGA: Recv ZSGSRD 36690
17-03-18 02:43:49.564 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.564 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.564 -07 000000591 INF: FPGA: Recv ZSGSRD 36691
17-03-18 02:43:49.574 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.574 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.574 -07 000000462 INF: FPGA: Recv ZSGSRD 36689
17-03-18 02:43:49.584 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.584 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.584 -07 000000590 INF: FPGA: Recv ZSGSRD 36693
17-03-18 02:43:49.594 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.594 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.594 -07 000000430 INF: FPGA: Recv ZSGSRD 36695
17-03-18 02:43:49.604 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.604 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:49.604 -07 000000561 INF: FPGA: Recv ZSGSRD 36697
17-03-18 02:43:49.614 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.614 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:49.614 -07 000000461 INF: FPGA: Recv ZPIEZORD 32819
17-03-18 02:43:49.624 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:49.624 -07 000000576 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.868 V. Piezo Error = -8.6 V.
17-03-18 02:43:49.624 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36694 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36693 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36689 (-175.1 uncal um), Max = 36702 (-175.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:43:49.624 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36694, posNoise = 8, negNoise = 5
17-03-18 02:43:49.624 -07 000000576 INF: Z Motor: After move to -0.176045, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:49.624 -07 000000576 INF: Z Motor: Settle wait time = 1483 ms, measure time = 104 ms (allowed 150 ms), total time = 1587 ms
17-03-18 02:43:49.624 -07 000000576 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:49.674 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1640 ms
17-03-18 02:43:49.674 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:49.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:49.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:49.674 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:49.674 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:49.674 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:49.674 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:49.674 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:49.674 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:49.684 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:49.684 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:49.694 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:43:49.694 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:43:49.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:49.734 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:50.034 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:50.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:50.034 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:50.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:43:50.074 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:50.074 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:50.074 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:43:50.154 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:43:50.154 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:50.154 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:43:50.154 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:43:50.174 -07 000000618 INF: Autofocus start
17-03-18 02:43:50.174 -07 000000618 INF: MeasureProfile start
17-03-18 02:43:50.174 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:50.174 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:50.184 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:50.184 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:50.184 -07 000000618 INF: MeasureProfile done
17-03-18 02:43:50.184 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:43:50.184 -07 000000618 INF: Autofocus finished
17-03-18 02:43:50.384 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:50.384 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:43:50.384 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176053392340911. ----------
17-03-18 02:43:50.384 -07 000000610 INF: Cycle	103	Tile	8	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:50.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36990, sync = True, waitForSettling = True)
17-03-18 02:43:50.394 -07 000000610 INF: Z Motor: Moving to -0.169329 mm, started at -0.176053 mm, distance = 6.72 um
17-03-18 02:43:50.394 -07 000000610 INF: FPGA: Xmit ZDACW 36990\n [Z Motor]
17-03-18 02:43:50.394 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:43:50.404 -07 000000610 INF: FPGA: 'ZDACW 36990' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:43:50.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:50.404 -07 000000501 INF: FPGA: Recv ZDACR 36990
17-03-18 02:43:50.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:50.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.564 -07 000000512 INF: FPGA: Recv ZSGSRD 35650
17-03-18 02:43:50.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.574 -07 000000561 INF: FPGA: Recv ZSGSRD 35648
17-03-18 02:43:50.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.584 -07 000000461 INF: FPGA: Recv ZSGSRD 35652
17-03-18 02:43:50.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.594 -07 000000590 INF: FPGA: Recv ZSGSRD 35647
17-03-18 02:43:50.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.604 -07 000000579 INF: FPGA: Recv ZSGSRD 35642
17-03-18 02:43:50.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.614 -07 000000626 INF: FPGA: Recv ZSGSRD 35649
17-03-18 02:43:50.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.624 -07 000000591 INF: FPGA: Recv ZSGSRD 35649
17-03-18 02:43:50.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.634 -07 000000462 INF: FPGA: Recv ZSGSRD 35653
17-03-18 02:43:50.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.644 -07 000000606 INF: FPGA: Recv ZSGSRD 35643
17-03-18 02:43:50.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:50.654 -07 000000501 INF: FPGA: Recv ZSGSRD 35648
17-03-18 02:43:50.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:50.664 -07 000000569 INF: FPGA: Recv ZPIEZORD 31426
17-03-18 02:43:50.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:50.674 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.3 V.
17-03-18 02:43:50.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35648 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35648 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35642 (-168.4 uncal um), Max = 35653 (-168.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:43:50.674 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35648, posNoise = 5, negNoise = 6
17-03-18 02:43:50.674 -07 000000610 INF: Z Motor: After move to -0.169329, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:50.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:43:50.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:50.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:50.674 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:50.674 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:50.674 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:50.674 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:50.674 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:50.674 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:50.674 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:50.674 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:50.674 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:43:50.674 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:50.684 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:50.684 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:50.684 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:43:50.684 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:50.684 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:43:50.684 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:43:50.694 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:43:50.694 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:43:50.694 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37167 150\n [Camera]
17-03-18 02:43:50.894 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:43:51.294 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:51.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:51.294 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:51.294 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:51.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:51.294 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:51.294 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:51.294 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:43:51.304 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:51.304 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:43:51.484 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37167 783
17-03-18 02:43:51.504 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:51.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:51.634 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:51.674 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 02:43:51.674 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 02:43:51.674 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:51.674 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:43:51.674 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:43:51.674 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:51.674 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:51.674 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:51.674 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:43:51.684 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:43:51.824 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:43:51.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:43:51.824 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:51.824 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:43:51.824 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:51.824 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:43:51.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:43:51.824 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:51.824 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:51.824 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:43:52.014 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:43:52.014 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:43:52.014 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37167 150' command took 2 ms to send, 1319 ms to get response, and 1326 ms overall
17-03-18 02:43:52.024 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:52.024 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.16933366644063. ------
17-03-18 02:43:52.024 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:52.024 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17589 mm
17-03-18 02:43:52.024 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:52.024 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:43:52.164 -07 000000512 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 02:43:52.164 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38422, sync = True, waitForSettling = False)
17-03-18 02:43:52.164 -07 000000618 INF: Z Motor: Moving to -0.175885 mm, started at -0.169334 mm, distance = -6.55 um
17-03-18 02:43:52.164 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:52.164 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 137 ms overall
17-03-18 02:43:52.164 -07 000000618 INF: FPGA: Xmit ZDACW 38422\n [Z Motor]
17-03-18 02:43:52.164 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:43:52.174 -07 000000618 INF: FPGA: 'ZDACW 38422' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:52.174 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:52.174 -07 000000591 INF: FPGA: Recv ZDACR 38422
17-03-18 02:43:52.184 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:52.184 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:52.184 -07 000000618 INF: Z Motor: MoveAbsStepped took 17 ms (did NOT wait for settling yet))
17-03-18 02:43:52.194 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:52.194 -07 000000467 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:43:52.204 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-18 02:43:52.204 -07 000000512 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:52.204 -07 000000512 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:43:52.204 -07 000000512 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:43:52.204 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:43:52.214 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:43:52.214 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:43:52.214 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:52.214 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:43:52.224 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:43:52.224 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:52.224 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:52.224 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:43:52.224 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:52.234 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:43:52.384 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:52.384 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 02:43:52.584 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:43:52.584 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 374 ms to get response, and 378 ms overall
17-03-18 02:43:52.624 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:52.634 -07 000000576 INF: FPGA: Recv YRDPOS 136270
17-03-18 02:43:52.634 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:43:52.634 -07 000000512 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:52.634 -07 000000512 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:43:52.634 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-18 02:43:53.414 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.004458,
17-03-18 02:43:53.584 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:53.584 -07 000000561 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:43:53.594 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:53.594 -07 000000512 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:53.634 -07 000000512 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:53.634 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:43:53.634 -07 000000512 INF: Y Motor: Moved to 66.5386 after 1472 ms (table move)
17-03-18 02:43:53.634 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175885 mm (DAC = 38422)
17-03-18 02:43:53.634 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.644 -07 000000590 INF: FPGA: Recv ZSGSRD 36667
17-03-18 02:43:53.644 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:43:53.644 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.644 -07 000000467 INF: FPGA: Recv ZSGSRD 36667
17-03-18 02:43:53.654 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:53.654 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.654 -07 000000501 INF: FPGA: Recv ZSGSRD 36664
17-03-18 02:43:53.664 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:53.664 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.664 -07 000000430 INF: FPGA: Recv ZSGSRD 36667
17-03-18 02:43:53.674 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:53.674 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.674 -07 000000591 INF: FPGA: Recv ZSGSRD 36664
17-03-18 02:43:53.684 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:53.684 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.684 -07 000000569 INF: FPGA: Recv ZSGSRD 36666
17-03-18 02:43:53.694 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:53.694 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.694 -07 000000424 INF: FPGA: Recv ZSGSRD 36669
17-03-18 02:43:53.704 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:53.704 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.704 -07 000000461 INF: FPGA: Recv ZSGSRD 36674
17-03-18 02:43:53.714 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:53.714 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.714 -07 000000576 INF: FPGA: Recv ZSGSRD 36674
17-03-18 02:43:53.724 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:53.724 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:53.724 -07 000000579 INF: FPGA: Recv ZSGSRD 36665
17-03-18 02:43:53.734 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:53.734 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:53.734 -07 000000444 INF: FPGA: Recv ZPIEZORD 32812
17-03-18 02:43:53.744 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:53.744 -07 000000626 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.5 V.
17-03-18 02:43:53.744 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36668 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36667 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36664 (-175.0 uncal um), Max = 36674 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:43:53.744 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36668, posNoise = 6, negNoise = 4
17-03-18 02:43:53.744 -07 000000626 INF: Z Motor: After move to -0.175885, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:53.744 -07 000000626 INF: Z Motor: Settle wait time = 1476 ms, measure time = 101 ms (allowed 150 ms), total time = 1577 ms
17-03-18 02:43:53.744 -07 000000626 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:53.794 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1764 ms
17-03-18 02:43:53.794 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:53.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:53.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:53.794 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:53.794 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:53.794 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:53.794 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:53.804 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:43:53.804 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:53.804 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:53.804 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:53.814 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:43:53.814 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:43:53.814 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:53.864 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:54.154 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:54.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:54.164 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:54.164 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:43:54.194 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:54.194 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:54.204 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 02:43:54.274 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:43:54.274 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:54.274 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:43:54.274 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:43:54.304 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:54.304 -07 000000467 INF: Autofocus start
17-03-18 02:43:54.304 -07 000000467 INF: MeasureProfile start
17-03-18 02:43:54.304 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:54.314 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:43:54.314 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:54.324 -07 000000467 INF: MeasureProfile done
17-03-18 02:43:54.324 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:43:54.324 -07 000000467 INF: Autofocus finished
17-03-18 02:43:54.514 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:54.514 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:43:54.524 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175886362825226. ----------
17-03-18 02:43:54.524 -07 000000610 INF: Cycle	103	Tile	9	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:54.524 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36937, sync = True, waitForSettling = True)
17-03-18 02:43:54.524 -07 000000610 INF: Z Motor: Moving to -0.169087 mm, started at -0.175886 mm, distance = 6.80 um
17-03-18 02:43:54.524 -07 000000610 INF: FPGA: Xmit ZDACW 36937\n [Z Motor]
17-03-18 02:43:54.524 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:43:54.534 -07 000000610 INF: FPGA: 'ZDACW 36937' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:54.534 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:54.534 -07 000000462 INF: FPGA: Recv ZDACR 36937
17-03-18 02:43:54.544 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.544 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:54.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.694 -07 000000512 INF: FPGA: Recv ZSGSRD 35607
17-03-18 02:43:54.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.704 -07 000000467 INF: FPGA: Recv ZSGSRD 35619
17-03-18 02:43:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.714 -07 000000576 INF: FPGA: Recv ZSGSRD 35615
17-03-18 02:43:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.724 -07 000000424 INF: FPGA: Recv ZSGSRD 35605
17-03-18 02:43:54.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.734 -07 000000591 INF: FPGA: Recv ZSGSRD 35615
17-03-18 02:43:54.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.744 -07 000000569 INF: FPGA: Recv ZSGSRD 35618
17-03-18 02:43:54.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.754 -07 000000618 INF: FPGA: Recv ZSGSRD 35607
17-03-18 02:43:54.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.764 -07 000000444 INF: FPGA: Recv ZSGSRD 35610
17-03-18 02:43:54.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.774 -07 000000501 INF: FPGA: Recv ZSGSRD 35609
17-03-18 02:43:54.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:54.784 -07 000000462 INF: FPGA: Recv ZSGSRD 35615
17-03-18 02:43:54.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.794 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:54.794 -07 000000590 INF: FPGA: Recv ZPIEZORD 31415
17-03-18 02:43:54.804 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:54.804 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.3 V.
17-03-18 02:43:54.804 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35612 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35612 (-168.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35605 (-168.2 uncal um), Max = 35619 (-168.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:43:54.804 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35612, posNoise = 7, negNoise = 7
17-03-18 02:43:54.804 -07 000000610 INF: Z Motor: After move to -0.169087, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:54.804 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:43:54.804 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:54.804 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:54.804 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:54.804 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:54.804 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:54.804 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:54.804 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:54.804 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:54.804 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:43:54.804 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:54.804 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:54.804 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:54.814 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:54.814 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:54.814 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:43:54.814 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:54.824 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:43:54.824 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:43:54.824 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:43:54.824 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:43:54.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37114 150\n [Camera]
17-03-18 02:43:55.024 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:43:55.424 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:55.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:55.424 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:55.424 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:55.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:55.424 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:55.424 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:55.424 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:43:55.424 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:55.424 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:43:55.614 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37114 783
17-03-18 02:43:55.764 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:55.804 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:43:55.804 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:43:55.804 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:55.804 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:55.814 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:43:55.814 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:43:55.814 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:43:55.814 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:55.814 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:55.814 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:43:55.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:43:55.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:43:55.964 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:55.964 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:55.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:43:55.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:43:55.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:43:55.964 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:55.964 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:55.964 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:43:56.144 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:43:56.144 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:43:56.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37114 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:43:56.154 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:43:56.154 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169102394803526. ------
17-03-18 02:43:56.154 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17592 mm
17-03-18 02:43:56.154 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:43:56.154 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:56.154 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:43:56.154 -07 000000461 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 02:43:56.154 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:56.154 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38430, sync = True, waitForSettling = False)
17-03-18 02:43:56.154 -07 000000512 INF: Z Motor: Moving to -0.175921 mm, started at -0.169102 mm, distance = -6.82 um
17-03-18 02:43:56.164 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:56.164 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:43:56.164 -07 000000501 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:43:56.174 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:43:56.174 -07 000000461 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:56.174 -07 000000461 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:43:56.174 -07 000000461 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:43:56.174 -07 000000512 INF: FPGA: Xmit ZDACW 38430\n [Z Motor]
17-03-18 02:43:56.174 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:43:56.184 -07 000000512 INF: FPGA: 'ZDACW 38430' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:43:56.184 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:43:56.194 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:43:56.204 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:56.204 -07 000000467 INF: FPGA: Recv ZDACR 38430
17-03-18 02:43:56.214 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:43:56.214 -07 000000512 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:43:56.364 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:43:56.364 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:43:56.364 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:56.364 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 02:43:56.364 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:43:56.364 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:56.374 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:43:56.374 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:43:56.374 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:43:56.384 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:43:56.384 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:43:56.384 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:43:56.504 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:43:56.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:43:56.564 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:43:56.564 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:43:56.614 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:56.614 -07 000000626 INF: FPGA: Recv YRDPOS 137976
17-03-18 02:43:56.624 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:56.624 -07 000000461 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:56.624 -07 000000461 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 02:43:56.624 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:43:57.574 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:43:57.574 -07 000000424 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:43:57.584 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.584 -07 000000461 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:43:57.604 -07 000000461 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:43:57.604 -07 000000461 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:43:57.604 -07 000000461 INF: Y Motor: Moved to 67.3716 after 1450 ms (table move)
17-03-18 02:43:57.614 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175921 mm (DAC = 38430)
17-03-18 02:43:57.614 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.614 -07 000000591 INF: FPGA: Recv ZSGSRD 36674
17-03-18 02:43:57.624 -07 000000579 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:43:57.624 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.624 -07 000000569 INF: FPGA: Recv ZSGSRD 36684
17-03-18 02:43:57.634 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.634 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.634 -07 000000461 INF: FPGA: Recv ZSGSRD 36678
17-03-18 02:43:57.644 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.644 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.644 -07 000000626 INF: FPGA: Recv ZSGSRD 36676
17-03-18 02:43:57.654 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.654 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.654 -07 000000461 INF: FPGA: Recv ZSGSRD 36676
17-03-18 02:43:57.664 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.664 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.664 -07 000000462 INF: FPGA: Recv ZSGSRD 36673
17-03-18 02:43:57.674 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.674 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.674 -07 000000424 INF: FPGA: Recv ZSGSRD 36671
17-03-18 02:43:57.684 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.684 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.684 -07 000000467 INF: FPGA: Recv ZSGSRD 36667
17-03-18 02:43:57.694 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.694 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.694 -07 000000591 INF: FPGA: Recv ZSGSRD 36678
17-03-18 02:43:57.704 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.704 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:57.704 -07 000000512 INF: FPGA: Recv ZSGSRD 36680
17-03-18 02:43:57.714 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.714 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:57.714 -07 000000430 INF: FPGA: Recv ZPIEZORD 32838
17-03-18 02:43:57.724 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:57.724 -07 000000579 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.5 V.
17-03-18 02:43:57.724 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36676 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36676 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36667 (-175.0 uncal um), Max = 36684 (-175.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:43:57.724 -07 000000579 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36676, posNoise = 8, negNoise = 9
17-03-18 02:43:57.724 -07 000000579 INF: Z Motor: After move to -0.175921, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:57.724 -07 000000579 INF: Z Motor: Settle wait time = 1453 ms, measure time = 108 ms (allowed 150 ms), total time = 1561 ms
17-03-18 02:43:57.724 -07 000000579 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:43:57.774 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:43:57.774 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:43:57.774 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:57.774 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:57.774 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:57.774 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:57.774 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:43:57.774 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:57.774 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:43:57.774 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:43:57.784 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:57.784 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:43:57.784 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:43:57.784 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:43:57.794 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:43:57.834 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:43:58.134 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:43:58.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:43:58.134 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:43:58.134 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:43:58.174 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:43:58.174 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:43:58.174 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:43:58.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:43:58.254 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:58.254 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:43:58.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:43:58.274 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:43:58.274 -07 000000455 INF: Autofocus start
17-03-18 02:43:58.274 -07 000000455 INF: MeasureProfile start
17-03-18 02:43:58.274 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:43:58.284 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:43:58.284 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:43:58.294 -07 000000455 INF: MeasureProfile done
17-03-18 02:43:58.294 -07 000000455 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:43:58.294 -07 000000455 INF: Autofocus finished
17-03-18 02:43:58.484 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:43:58.484 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 02:43:58.484 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.17593775652236. ----------
17-03-18 02:43:58.484 -07 000000610 INF: Cycle	103	Tile	10	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:43:58.494 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36927, sync = True, waitForSettling = True)
17-03-18 02:43:58.494 -07 000000610 INF: Z Motor: Moving to -0.169041 mm, started at -0.175938 mm, distance = 6.90 um
17-03-18 02:43:58.494 -07 000000610 INF: FPGA: Xmit ZDACW 36927\n [Z Motor]
17-03-18 02:43:58.494 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:43:58.504 -07 000000610 INF: FPGA: 'ZDACW 36927' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:43:58.504 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:43:58.504 -07 000000561 INF: FPGA: Recv ZDACR 36927
17-03-18 02:43:58.514 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.514 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:43:58.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.664 -07 000000576 INF: FPGA: Recv ZSGSRD 35603
17-03-18 02:43:58.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:43:58.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.674 -07 000000430 INF: FPGA: Recv ZSGSRD 35604
17-03-18 02:43:58.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.684 -07 000000590 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:43:58.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.694 -07 000000591 INF: FPGA: Recv ZSGSRD 35599
17-03-18 02:43:58.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.704 -07 000000455 INF: FPGA: Recv ZSGSRD 35608
17-03-18 02:43:58.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.714 -07 000000629 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:43:58.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.724 -07 000000444 INF: FPGA: Recv ZSGSRD 35607
17-03-18 02:43:58.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.734 -07 000000424 INF: FPGA: Recv ZSGSRD 35604
17-03-18 02:43:58.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.744 -07 000000461 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:43:58.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:43:58.754 -07 000000561 INF: FPGA: Recv ZSGSRD 35610
17-03-18 02:43:58.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:43:58.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:43:58.774 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.99219,
17-03-18 02:43:58.774 -07 000000591 INF: FPGA: Recv ZPIEZORD 31426
17-03-18 02:43:58.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:43:58.784 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -9.2 V.
17-03-18 02:43:58.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35604 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35604 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35599 (-168.1 uncal um), Max = 35610 (-168.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:43:58.784 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35604, posNoise = 6, negNoise = 5
17-03-18 02:43:58.784 -07 000000610 INF: Z Motor: After move to -0.169041, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:43:58.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 02:43:58.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:43:58.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:43:58.784 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:43:58.784 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:43:58.784 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:43:58.784 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:43:58.784 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:43:58.784 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:43:58.784 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:43:58.784 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:43:58.784 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:43:58.784 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:43:58.794 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:43:58.794 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:43:58.794 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:43:58.794 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:43:58.804 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:43:58.804 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:43:58.804 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:43:58.804 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:43:58.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37103 150\n [Camera]
17-03-18 02:43:59.004 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:43:59.404 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:43:59.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:43:59.404 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:59.404 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:59.404 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:43:59.414 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:43:59.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:43:59.414 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:59.414 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:59.414 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:43:59.604 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37103 783
17-03-18 02:43:59.754 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:43:59.804 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:43:59.804 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:43:59.804 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:59.814 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:59.814 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:43:59.814 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:43:59.814 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:43:59.814 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:43:59.814 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:43:59.824 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:43:59.944 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:43:59.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:43:59.944 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:43:59.944 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:43:59.944 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:43:59.944 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:43:59.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:43:59.944 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:43:59.944 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:43:59.944 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:44:00.134 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:00.134 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:00.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37103 150' command took 2 ms to send, 1313 ms to get response, and 1330 ms overall
17-03-18 02:44:00.134 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:44:00.134 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169051001106392. ------
17-03-18 02:44:00.134 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:00.134 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17525 mm
17-03-18 02:44:00.134 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:00.264 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:00.264 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 02:44:00.264 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:00.264 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:44:00.264 -07 000000430 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:44:00.264 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38283, sync = True, waitForSettling = False)
17-03-18 02:44:00.264 -07 000000512 INF: Z Motor: Moving to -0.175248 mm, started at -0.169051 mm, distance = -6.20 um
17-03-18 02:44:00.274 -07 000000512 INF: FPGA: Xmit ZDACW 38283\n [Z Motor]
17-03-18 02:44:00.274 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:44:00.284 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:00.284 -07 000000512 INF: FPGA: 'ZDACW 38283' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:44:00.284 -07 000000576 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:44:00.294 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:44:00.294 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:00.294 -07 000000430 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:00.294 -07 000000430 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:00.294 -07 000000430 INF: Y Motor: Moving 1346 steps-24
17-03-18 02:44:00.294 -07 000000462 INF: FPGA: Recv ZDACR 38283
17-03-18 02:44:00.304 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:44:00.304 -07 000000512 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:44:00.304 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:00.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:44:00.344 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:44:00.344 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:00.354 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 02:44:00.354 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:44:00.354 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:00.354 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:00.354 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:44:00.354 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:44:00.364 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 02:44:00.464 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:00.464 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 02:44:00.674 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:44:00.674 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:44:00.724 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:00.724 -07 000000467 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:44:00.734 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:00.734 -07 000000430 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:00.734 -07 000000430 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:44:00.734 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.168 mm/sec
17-03-18 02:44:01.504 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:01.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:01.684 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:01.684 -07 000000462 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:44:01.694 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:01.694 -07 000000430 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:01.714 -07 000000430 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:01.714 -07 000000430 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:01.714 -07 000000430 INF: Y Motor: Moved to 68.2046 after 1454 ms (table move)
17-03-18 02:44:01.724 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175248 mm (DAC = 38283)
17-03-18 02:44:01.724 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.724 -07 000000626 INF: FPGA: Recv ZSGSRD 36566
17-03-18 02:44:01.734 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:01.734 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.734 -07 000000590 INF: FPGA: Recv ZSGSRD 36573
17-03-18 02:44:01.744 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:01.744 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.744 -07 000000591 INF: FPGA: Recv ZSGSRD 36573
17-03-18 02:44:01.754 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:01.754 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.754 -07 000000512 INF: FPGA: Recv ZSGSRD 36564
17-03-18 02:44:01.764 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:01.764 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.764 -07 000000629 INF: FPGA: Recv ZSGSRD 36566
17-03-18 02:44:01.774 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:01.774 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.774 -07 000000444 INF: FPGA: Recv ZSGSRD 36573
17-03-18 02:44:01.784 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:01.784 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.784 -07 000000461 INF: FPGA: Recv ZSGSRD 36570
17-03-18 02:44:01.794 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:01.794 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.794 -07 000000424 INF: FPGA: Recv ZSGSRD 36569
17-03-18 02:44:01.804 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:01.804 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.804 -07 000000626 INF: FPGA: Recv ZSGSRD 36568
17-03-18 02:44:01.814 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:01.814 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:01.814 -07 000000501 INF: FPGA: Recv ZSGSRD 36575
17-03-18 02:44:01.824 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:01.824 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:01.824 -07 000000629 INF: FPGA: Recv ZPIEZORD 32714
17-03-18 02:44:01.834 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:01.834 -07 000000455 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.5 V.
17-03-18 02:44:01.834 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36570 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36570 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36564 (-174.3 uncal um), Max = 36575 (-174.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:44:01.834 -07 000000455 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36570, posNoise = 5, negNoise = 6
17-03-18 02:44:01.834 -07 000000455 INF: Z Motor: After move to -0.175248, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:01.834 -07 000000455 INF: Z Motor: Settle wait time = 1458 ms, measure time = 108 ms (allowed 150 ms), total time = 1566 ms
17-03-18 02:44:01.834 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:01.884 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1741 ms
17-03-18 02:44:01.884 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:01.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:01.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:01.884 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:01.884 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:01.884 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:01.884 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:01.884 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:44:01.884 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:01.894 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:01.894 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:01.904 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:44:01.904 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:44:01.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:01.954 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:02.254 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:02.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:02.254 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:02.254 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:02.294 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:02.294 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:02.294 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:44:02.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:44:02.374 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:02.374 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:44:02.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:44:02.394 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:02.394 -07 000000512 INF: Autofocus start
17-03-18 02:44:02.394 -07 000000512 INF: MeasureProfile start
17-03-18 02:44:02.394 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:02.404 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:02.404 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:02.404 -07 000000512 INF: MeasureProfile done
17-03-18 02:44:02.404 -07 000000512 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:44:02.404 -07 000000512 INF: Autofocus finished
17-03-18 02:44:02.604 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:02.604 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:02.604 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175256790035333. ----------
17-03-18 02:44:02.604 -07 000000610 INF: Cycle	103	Tile	11	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:02.614 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36780, sync = True, waitForSettling = True)
17-03-18 02:44:02.614 -07 000000610 INF: Z Motor: Moving to -0.168368 mm, started at -0.175257 mm, distance = 6.89 um
17-03-18 02:44:02.614 -07 000000610 INF: FPGA: Xmit ZDACW 36780\n [Z Motor]
17-03-18 02:44:02.624 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:44:02.624 -07 000000610 INF: FPGA: 'ZDACW 36780' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:44:02.624 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:02.624 -07 000000590 INF: FPGA: Recv ZDACR 36780
17-03-18 02:44:02.634 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.634 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:02.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.784 -07 000000430 INF: FPGA: Recv ZSGSRD 35505
17-03-18 02:44:02.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:02.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.794 -07 000000512 INF: FPGA: Recv ZSGSRD 35503
17-03-18 02:44:02.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.804 -07 000000561 INF: FPGA: Recv ZSGSRD 35498
17-03-18 02:44:02.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.814 -07 000000424 INF: FPGA: Recv ZSGSRD 35503
17-03-18 02:44:02.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.824 -07 000000501 INF: FPGA: Recv ZSGSRD 35502
17-03-18 02:44:02.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.834 -07 000000579 INF: FPGA: Recv ZSGSRD 35497
17-03-18 02:44:02.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.844 -07 000000576 INF: FPGA: Recv ZSGSRD 35501
17-03-18 02:44:02.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.854 -07 000000569 INF: FPGA: Recv ZSGSRD 35494
17-03-18 02:44:02.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.864 -07 000000462 INF: FPGA: Recv ZSGSRD 35505
17-03-18 02:44:02.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:02.874 -07 000000501 INF: FPGA: Recv ZSGSRD 35501
17-03-18 02:44:02.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.884 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:02.884 -07 000000430 INF: FPGA: Recv ZPIEZORD 31284
17-03-18 02:44:02.894 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:02.894 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.612 V. Piezo Error = -9.3 V.
17-03-18 02:44:02.894 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35501 (-167.5 uncal um), Error = 0.8 uncal um, Median = 35502 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35494 (-167.5 uncal um), Max = 35505 (-167.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:44:02.894 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35501, posNoise = 4, negNoise = 7
17-03-18 02:44:02.894 -07 000000610 INF: Z Motor: After move to -0.168368, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:02.894 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:44:02.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:02.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:02.894 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:02.894 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:02.894 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:02.894 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:02.894 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:02.894 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:02.894 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:02.894 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:02.894 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:44:02.894 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:02.904 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:44:02.904 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:02.904 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:44:02.904 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:02.914 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:44:02.914 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:44:02.914 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:44:02.914 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:44:02.914 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36957 150\n [Camera]
17-03-18 02:44:03.114 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:03.514 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:03.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:03.514 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:03.514 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:03.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:03.514 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:03.514 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:03.514 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:44:03.524 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:03.524 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:44:03.704 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36957 783
17-03-18 02:44:03.854 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:03.894 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:44:03.894 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:44:03.894 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:03.894 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:44:03.894 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:44:03.894 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:03.894 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:44:03.894 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:03.904 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:44:03.914 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:44:04.044 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:04.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:04.044 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:04.054 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:04.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:04.054 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:04.054 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:04.054 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:04.054 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:44:04.054 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:44:04.154 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.993549,
17-03-18 02:44:04.234 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:04.234 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:04.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36957 150' command took 2 ms to send, 1319 ms to get response, and 1325 ms overall
17-03-18 02:44:04.244 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:44:04.244 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168389307255791. ------
17-03-18 02:44:04.244 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:04.244 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17501 mm
17-03-18 02:44:04.244 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:04.374 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:04.374 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 02:44:04.374 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:04.374 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:44:04.374 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38232, sync = True, waitForSettling = False)
17-03-18 02:44:04.374 -07 000000461 INF: Z Motor: Moving to -0.175015 mm, started at -0.168389 mm, distance = -6.63 um
17-03-18 02:44:04.374 -07 000000501 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 02:44:04.384 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:04.384 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:44:04.394 -07 000000461 INF: FPGA: Xmit ZDACW 38232\n [Z Motor]
17-03-18 02:44:04.394 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:44:04.394 -07 000000501 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:04.394 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:44:04.394 -07 000000501 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:04.394 -07 000000501 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:44:04.404 -07 000000461 INF: FPGA: 'ZDACW 38232' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:44:04.404 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:04.404 -07 000000579 INF: FPGA: Recv ZDACR 38232
17-03-18 02:44:04.414 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:04.414 -07 000000461 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:44:04.414 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:04.444 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:44:04.444 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:44:04.444 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:04.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:44:04.444 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:44:04.444 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:04.444 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:04.444 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:04.444 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:44:04.454 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:44:04.574 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:04.574 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:44:04.784 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:44:04.784 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:44:04.834 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:04.834 -07 000000455 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:44:04.844 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:04.844 -07 000000501 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:04.844 -07 000000501 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:44:04.844 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.127 mm/sec
17-03-18 02:44:05.794 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:05.794 -07 000000591 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:44:05.804 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:05.804 -07 000000501 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:05.824 -07 000000501 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:05.824 -07 000000501 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:44:05.824 -07 000000501 INF: Y Motor: Moved to 69.0269 after 1456 ms (table move)
17-03-18 02:44:05.834 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175015 mm (DAC = 38232)
17-03-18 02:44:05.834 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.834 -07 000000512 INF: FPGA: Recv ZSGSRD 36526
17-03-18 02:44:05.844 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:05.844 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.844 -07 000000467 INF: FPGA: Recv ZSGSRD 36536
17-03-18 02:44:05.854 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.854 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.854 -07 000000444 INF: FPGA: Recv ZSGSRD 36538
17-03-18 02:44:05.864 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.864 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.864 -07 000000462 INF: FPGA: Recv ZSGSRD 36528
17-03-18 02:44:05.874 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.874 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.874 -07 000000618 INF: FPGA: Recv ZSGSRD 36530
17-03-18 02:44:05.884 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.884 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.884 -07 000000591 INF: FPGA: Recv ZSGSRD 36534
17-03-18 02:44:05.894 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.894 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.894 -07 000000461 INF: FPGA: Recv ZSGSRD 36530
17-03-18 02:44:05.904 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.904 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.904 -07 000000569 INF: FPGA: Recv ZSGSRD 36540
17-03-18 02:44:05.914 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.914 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.914 -07 000000590 INF: FPGA: Recv ZSGSRD 36535
17-03-18 02:44:05.924 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.924 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:05.924 -07 000000462 INF: FPGA: Recv ZSGSRD 36542
17-03-18 02:44:05.934 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.934 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:05.934 -07 000000455 INF: FPGA: Recv ZPIEZORD 32679
17-03-18 02:44:05.944 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:05.944 -07 000000424 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.834 V. Piezo Error = -8.5 V.
17-03-18 02:44:05.944 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36534 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36534 (-174.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36526 (-174.1 uncal um), Max = 36542 (-174.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:44:05.944 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36534, posNoise = 8, negNoise = 8
17-03-18 02:44:05.944 -07 000000424 INF: Z Motor: After move to -0.175015, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:05.944 -07 000000424 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:44:05.944 -07 000000424 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:05.994 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1744 ms
17-03-18 02:44:05.994 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:05.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:05.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:05.994 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:05.994 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:05.994 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:05.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:05.994 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:05.994 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:06.004 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:06.004 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:06.014 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:44:06.014 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:44:06.014 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:06.064 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:06.364 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:06.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:06.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:06.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:06.404 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:06.404 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:06.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 388 ms overall
17-03-18 02:44:06.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:44:06.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:06.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:44:06.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:44:06.504 -07 000000626 INF: Autofocus start
17-03-18 02:44:06.504 -07 000000626 INF: MeasureProfile start
17-03-18 02:44:06.504 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:06.504 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:06.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:06.504 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:06.514 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:44:06.514 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:06.514 -07 000000626 INF: MeasureProfile done
17-03-18 02:44:06.514 -07 000000626 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:44:06.514 -07 000000626 INF: Autofocus finished
17-03-18 02:44:06.714 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:06.714 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:06.714 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.17502551839823. ----------
17-03-18 02:44:06.714 -07 000000610 INF: Cycle	103	Tile	12	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:06.724 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36747, sync = True, waitForSettling = True)
17-03-18 02:44:06.724 -07 000000610 INF: Z Motor: Moving to -0.168217 mm, started at -0.175026 mm, distance = 6.81 um
17-03-18 02:44:06.724 -07 000000610 INF: FPGA: Xmit ZDACW 36747\n [Z Motor]
17-03-18 02:44:06.724 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:44:06.734 -07 000000610 INF: FPGA: 'ZDACW 36747' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:06.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:06.734 -07 000000626 INF: FPGA: Recv ZDACR 36747
17-03-18 02:44:06.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:06.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.894 -07 000000569 INF: FPGA: Recv ZSGSRD 35478
17-03-18 02:44:06.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:06.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.904 -07 000000629 INF: FPGA: Recv ZSGSRD 35472
17-03-18 02:44:06.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.914 -07 000000561 INF: FPGA: Recv ZSGSRD 35478
17-03-18 02:44:06.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.924 -07 000000590 INF: FPGA: Recv ZSGSRD 35473
17-03-18 02:44:06.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.934 -07 000000502 INF: FPGA: Recv ZSGSRD 35473
17-03-18 02:44:06.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.944 -07 000000512 INF: FPGA: Recv ZSGSRD 35479
17-03-18 02:44:06.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.954 -07 000000430 INF: FPGA: Recv ZSGSRD 35473
17-03-18 02:44:06.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.964 -07 000000606 INF: FPGA: Recv ZSGSRD 35485
17-03-18 02:44:06.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.974 -07 000000444 INF: FPGA: Recv ZSGSRD 35475
17-03-18 02:44:06.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:06.984 -07 000000626 INF: FPGA: Recv ZSGSRD 35474
17-03-18 02:44:06.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:06.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:06.994 -07 000000462 INF: FPGA: Recv ZPIEZORD 31260
17-03-18 02:44:07.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:07.004 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.607 V. Piezo Error = -9.3 V.
17-03-18 02:44:07.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35476 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35474 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35472 (-167.3 uncal um), Max = 35485 (-167.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:44:07.004 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35476, posNoise = 9, negNoise = 4
17-03-18 02:44:07.004 -07 000000610 INF: Z Motor: After move to -0.168217, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:07.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:44:07.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:07.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:07.004 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:07.004 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:07.004 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:07.004 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:07.004 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:07.004 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:07.004 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:07.004 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:07.004 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:07.004 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:07.014 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:44:07.014 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:07.014 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:44:07.014 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:07.024 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:44:07.024 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:44:07.024 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:44:07.024 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:44:07.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36923 150\n [Camera]
17-03-18 02:44:07.224 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:07.624 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:44:07.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:44:07.624 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:07.624 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-18 02:44:07.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-18 02:44:07.624 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:07.624 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:07.634 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:44:07.634 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:07.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:44:07.814 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36923 783
17-03-18 02:44:07.964 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:08.004 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:44:08.014 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:44:08.014 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:08.014 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:44:08.014 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:44:08.014 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:08.014 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:44:08.014 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:44:08.014 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:08.024 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:44:08.154 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:08.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:08.154 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:08.154 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:08.154 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:44:08.164 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:08.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:08.164 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:08.164 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:08.164 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:44:08.344 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:08.344 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:08.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36923 150' command took 2 ms to send, 1317 ms to get response, and 1324 ms overall
17-03-18 02:44:08.344 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:44:08.344 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168228701952247. ------
17-03-18 02:44:08.354 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:08.354 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17454 mm
17-03-18 02:44:08.354 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:08.354 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:08.354 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:44:08.354 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 02:44:08.354 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38129, sync = True, waitForSettling = False)
17-03-18 02:44:08.354 -07 000000561 INF: Z Motor: Moving to -0.174543 mm, started at -0.168229 mm, distance = -6.31 um
17-03-18 02:44:08.364 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:08.364 -07 000000561 INF: FPGA: Xmit ZDACW 38129\n [Z Motor]
17-03-18 02:44:08.364 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:44:08.374 -07 000000561 INF: FPGA: 'ZDACW 38129' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:44:08.374 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:08.374 -07 000000462 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:44:08.384 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:08.384 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:44:08.384 -07 000000626 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:08.384 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:08.384 -07 000000626 INF: Y Motor: Moving 1353 steps-33
17-03-18 02:44:08.394 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:08.394 -07 000000444 INF: FPGA: Recv ZDACR 38129
17-03-18 02:44:08.404 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:44:08.404 -07 000000561 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:44:08.404 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:08.544 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:44:08.544 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:44:08.544 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:08.554 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:44:08.554 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:44:08.554 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:08.554 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:08.554 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:44:08.554 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:44:08.564 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:44:08.584 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:08.584 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:44:08.774 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:44:08.774 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:44:08.824 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:08.824 -07 000000455 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:44:08.834 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:44:08.834 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:08.834 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:44:08.834 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-18 02:44:09.514 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.989471,
17-03-18 02:44:09.784 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:09.784 -07 000000576 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:44:09.794 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.794 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:09.814 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:09.814 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:09.814 -07 000000626 INF: Y Motor: Moved to 69.8628 after 1461 ms (table move)
17-03-18 02:44:09.824 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174543 mm (DAC = 38129)
17-03-18 02:44:09.824 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.824 -07 000000501 INF: FPGA: Recv ZSGSRD 36461
17-03-18 02:44:09.834 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:09.834 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.834 -07 000000424 INF: FPGA: Recv ZSGSRD 36464
17-03-18 02:44:09.844 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.844 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.844 -07 000000606 INF: FPGA: Recv ZSGSRD 36463
17-03-18 02:44:09.854 -07 000000512 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.854 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.854 -07 000000462 INF: FPGA: Recv ZSGSRD 36460
17-03-18 02:44:09.864 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.864 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.864 -07 000000626 INF: FPGA: Recv ZSGSRD 36453
17-03-18 02:44:09.874 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.874 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.874 -07 000000569 INF: FPGA: Recv ZSGSRD 36461
17-03-18 02:44:09.884 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.884 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.884 -07 000000618 INF: FPGA: Recv ZSGSRD 36456
17-03-18 02:44:09.894 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.894 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.894 -07 000000591 INF: FPGA: Recv ZSGSRD 36461
17-03-18 02:44:09.904 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.904 -07 000000590 INF: FPGA: Recv ZSGSRD 36463
17-03-18 02:44:09.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:09.914 -07 000000430 INF: FPGA: Recv ZSGSRD 36465
17-03-18 02:44:09.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.924 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:09.924 -07 000000569 INF: FPGA: Recv ZPIEZORD 32587
17-03-18 02:44:09.934 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:09.934 -07 000000512 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.6 V.
17-03-18 02:44:09.934 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36461 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36461 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36453 (-173.6 uncal um), Max = 36465 (-173.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:44:09.934 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36461, posNoise = 4, negNoise = 8
17-03-18 02:44:09.934 -07 000000512 INF: Z Motor: After move to -0.174543, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:09.934 -07 000000512 INF: Z Motor: Settle wait time = 1464 ms, measure time = 107 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:44:09.934 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:09.984 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 02:44:09.984 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:09.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:09.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:09.984 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:09.984 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:09.984 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:09.984 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:09.984 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:09.984 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:09.994 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:09.994 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:09.994 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:44:09.994 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:44:10.004 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:10.044 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:10.344 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:10.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:10.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:10.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:44:10.384 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:10.384 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:10.384 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:44:10.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:44:10.464 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:10.464 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:44:10.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:44:10.484 -07 000000512 INF: Autofocus start
17-03-18 02:44:10.484 -07 000000512 INF: MeasureProfile start
17-03-18 02:44:10.484 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:10.484 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:10.494 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:44:10.494 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:10.504 -07 000000512 INF: MeasureProfile done
17-03-18 02:44:10.504 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:44:10.504 -07 000000512 INF: Autofocus finished
17-03-18 02:44:10.694 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:10.694 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:10.694 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174556550911881. ----------
17-03-18 02:44:10.694 -07 000000610 INF: Cycle	103	Tile	13	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:10.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36644, sync = True, waitForSettling = True)
17-03-18 02:44:10.704 -07 000000610 INF: Z Motor: Moving to -0.167745 mm, started at -0.174557 mm, distance = 6.81 um
17-03-18 02:44:10.704 -07 000000610 INF: FPGA: Xmit ZDACW 36644\n [Z Motor]
17-03-18 02:44:10.704 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:44:10.714 -07 000000610 INF: FPGA: 'ZDACW 36644' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:10.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:10.714 -07 000000606 INF: FPGA: Recv ZDACR 36644
17-03-18 02:44:10.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:10.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.874 -07 000000590 INF: FPGA: Recv ZSGSRD 35411
17-03-18 02:44:10.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:10.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.884 -07 000000512 INF: FPGA: Recv ZSGSRD 35401
17-03-18 02:44:10.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.894 -07 000000501 INF: FPGA: Recv ZSGSRD 35402
17-03-18 02:44:10.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.904 -07 000000461 INF: FPGA: Recv ZSGSRD 35399
17-03-18 02:44:10.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.914 -07 000000576 INF: FPGA: Recv ZSGSRD 35409
17-03-18 02:44:10.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.924 -07 000000430 INF: FPGA: Recv ZSGSRD 35403
17-03-18 02:44:10.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.934 -07 000000569 INF: FPGA: Recv ZSGSRD 35394
17-03-18 02:44:10.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.944 -07 000000561 INF: FPGA: Recv ZSGSRD 35409
17-03-18 02:44:10.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.954 -07 000000424 INF: FPGA: Recv ZSGSRD 35402
17-03-18 02:44:10.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:10.964 -07 000000455 INF: FPGA: Recv ZSGSRD 35402
17-03-18 02:44:10.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:10.974 -07 000000591 INF: FPGA: Recv ZPIEZORD 31184
17-03-18 02:44:10.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:10.984 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.3 V.
17-03-18 02:44:10.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35403 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35402 (-166.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35394 (-166.8 uncal um), Max = 35411 (-166.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:44:10.984 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35403, posNoise = 8, negNoise = 9
17-03-18 02:44:10.984 -07 000000610 INF: Z Motor: After move to -0.167745, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:10.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:44:10.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:10.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:10.984 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:10.984 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:10.984 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:10.984 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:10.984 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:10.984 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:10.984 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:10.984 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:10.984 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:10.984 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:10.994 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:10.994 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:10.994 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:44:10.994 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:11.004 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:44:11.004 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:44:11.004 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:44:11.004 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:44:11.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36820 150\n [Camera]
17-03-18 02:44:11.204 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:11.504 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:11.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:11.604 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:11.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:11.604 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:11.604 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:11.604 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:44:11.604 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:11.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:11.604 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:11.604 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:11.604 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:44:11.794 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36820 783
17-03-18 02:44:11.944 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:11.994 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:44:11.994 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:44:11.994 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:11.994 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:44:11.994 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:44:11.994 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:11.994 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:11.994 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:11.994 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:44:12.004 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:44:12.134 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:12.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:12.134 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:12.134 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:12.134 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:44:12.134 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:12.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:12.134 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:12.134 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:12.134 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:44:12.324 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:44:12.324 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:12.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36820 150' command took 2 ms to send, 1317 ms to get response, and 1324 ms overall
17-03-18 02:44:12.324 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:44:12.324 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167759734465898. ------
17-03-18 02:44:12.334 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:12.334 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17415 mm
17-03-18 02:44:12.334 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:12.334 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:44:12.334 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 02:44:12.334 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:12.464 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:12.464 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38043, sync = True, waitForSettling = False)
17-03-18 02:44:12.464 -07 000000462 INF: Z Motor: Moving to -0.174150 mm, started at -0.167760 mm, distance = -6.39 um
17-03-18 02:44:12.464 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 127 ms overall
17-03-18 02:44:12.464 -07 000000467 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:44:12.474 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 133 ms overall
17-03-18 02:44:12.474 -07 000000626 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:12.474 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:12.474 -07 000000626 INF: Y Motor: Moving 1344 steps-20
17-03-18 02:44:12.474 -07 000000462 INF: FPGA: Xmit ZDACW 38043\n [Z Motor]
17-03-18 02:44:12.474 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:44:12.484 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:12.484 -07 000000462 INF: FPGA: 'ZDACW 38043' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:44:12.494 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:12.504 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:12.504 -07 000000561 INF: FPGA: Recv ZDACR 38043
17-03-18 02:44:12.514 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:44:12.514 -07 000000462 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:44:12.544 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:44:12.544 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:44:12.544 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:12.544 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:44:12.544 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:44:12.544 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:12.544 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:12.544 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:44:12.544 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:44:12.554 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:44:12.684 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:12.684 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-18 02:44:12.864 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:44:12.864 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:44:12.914 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:12.914 -07 000000424 INF: FPGA: Recv YRDPOS 144768
17-03-18 02:44:12.924 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:44:12.924 -07 000000626 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:12.924 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:44:12.924 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 02:44:13.874 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:13.874 -07 000000444 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:44:13.884 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:13.884 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:13.904 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:13.904 -07 000000626 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:44:13.904 -07 000000626 INF: Y Motor: Moved to 70.6880 after 1573 ms (table move)
17-03-18 02:44:13.914 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174150 mm (DAC = 38043)
17-03-18 02:44:13.914 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:13.914 -07 000000462 INF: FPGA: Recv ZSGSRD 36397
17-03-18 02:44:13.924 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:13.924 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:13.924 -07 000000444 INF: FPGA: Recv ZSGSRD 36395
17-03-18 02:44:13.934 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:13.934 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:13.934 -07 000000561 INF: FPGA: Recv ZSGSRD 36407
17-03-18 02:44:13.944 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:13.944 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:13.944 -07 000000579 INF: FPGA: Recv ZSGSRD 36404
17-03-18 02:44:13.954 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:13.954 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:13.954 -07 000000569 INF: FPGA: Recv ZSGSRD 36398
17-03-18 02:44:13.964 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:13.964 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:13.964 -07 000000467 INF: FPGA: Recv ZSGSRD 36402
17-03-18 02:44:13.974 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:13.974 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:13.974 -07 000000461 INF: FPGA: Recv ZSGSRD 36394
17-03-18 02:44:13.984 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:13.994 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:13.994 -07 000000512 INF: FPGA: Recv ZSGSRD 36401
17-03-18 02:44:14.004 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:44:14.004 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:14.004 -07 000000462 INF: FPGA: Recv ZSGSRD 36402
17-03-18 02:44:14.014 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:14.014 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:14.014 -07 000000430 INF: FPGA: Recv ZSGSRD 36403
17-03-18 02:44:14.024 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:14.024 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:14.024 -07 000000618 INF: FPGA: Recv ZPIEZORD 32511
17-03-18 02:44:14.034 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:14.034 -07 000000629 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.805 V. Piezo Error = -8.6 V.
17-03-18 02:44:14.034 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36400 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36402 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36394 (-173.2 uncal um), Max = 36407 (-173.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:44:14.034 -07 000000629 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36400, posNoise = 7, negNoise = 6
17-03-18 02:44:14.034 -07 000000629 INF: Z Motor: After move to -0.174150, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:14.034 -07 000000629 INF: Z Motor: Settle wait time = 1451 ms, measure time = 119 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:44:14.034 -07 000000629 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:14.074 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 02:44:14.074 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:14.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:14.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:14.084 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:14.084 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:14.084 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:14.084 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:14.084 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:14.084 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:14.084 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:44:14.084 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:14.094 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:44:14.094 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:44:14.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:14.144 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:14.444 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:14.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:14.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:14.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:14.484 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:14.484 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:14.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 02:44:14.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:44:14.564 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:14.564 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:44:14.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:44:14.584 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:14.584 -07 000000576 INF: Autofocus start
17-03-18 02:44:14.584 -07 000000576 INF: MeasureProfile start
17-03-18 02:44:14.584 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:14.594 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:14.594 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:14.594 -07 000000576 INF: MeasureProfile done
17-03-18 02:44:14.594 -07 000000576 INF: X=-64  Z correction [um]=-0.4038377
17-03-18 02:44:14.594 -07 000000576 INF: Autofocus finished
17-03-18 02:44:14.794 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:14.794 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:14.794 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174164673971234. ----------
17-03-18 02:44:14.794 -07 000000610 INF: Cycle	103	Tile	14	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:14.804 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36467, sync = True, waitForSettling = True)
17-03-18 02:44:14.804 -07 000000610 INF: Z Motor: Moving to -0.166935 mm, started at -0.174165 mm, distance = 7.23 um
17-03-18 02:44:14.804 -07 000000610 INF: FPGA: Xmit ZDACW 36467\n [Z Motor]
17-03-18 02:44:14.804 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:44:14.814 -07 000000610 INF: FPGA: 'ZDACW 36467' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:14.814 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:14.814 -07 000000461 INF: FPGA: Recv ZDACR 36467
17-03-18 02:44:14.824 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:14.824 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:14.874 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.019446,
17-03-18 02:44:14.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:14.974 -07 000000569 INF: FPGA: Recv ZSGSRD 35282
17-03-18 02:44:14.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:14.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:14.984 -07 000000626 INF: FPGA: Recv ZSGSRD 35277
17-03-18 02:44:14.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:14.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:14.994 -07 000000579 INF: FPGA: Recv ZSGSRD 35277
17-03-18 02:44:15.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:15.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:15.004 -07 000000591 INF: FPGA: Recv ZSGSRD 35270
17-03-18 02:44:15.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:15.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:15.014 -07 000000467 INF: FPGA: Recv ZSGSRD 35275
17-03-18 02:44:15.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:15.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:15.024 -07 000000462 INF: FPGA: Recv ZSGSRD 35281
17-03-18 02:44:15.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:15.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:15.034 -07 000000501 INF: FPGA: Recv ZSGSRD 35278
17-03-18 02:44:15.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:15.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:15.044 -07 000000576 INF: FPGA: Recv ZSGSRD 35282
17-03-18 02:44:15.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:15.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:15.054 -07 000000502 INF: FPGA: Recv ZSGSRD 35276
17-03-18 02:44:15.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:15.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:15.064 -07 000000444 INF: FPGA: Recv ZSGSRD 35278
17-03-18 02:44:15.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:15.074 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:15.074 -07 000000462 INF: FPGA: Recv ZPIEZORD 31002
17-03-18 02:44:15.084 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:15.084 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.4 V.
17-03-18 02:44:15.084 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35278 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35278 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35270 (-166.0 uncal um), Max = 35282 (-166.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:44:15.084 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35278, posNoise = 4, negNoise = 8
17-03-18 02:44:15.084 -07 000000610 INF: Z Motor: After move to -0.166935, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:15.084 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:44:15.084 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:15.084 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:15.084 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:15.084 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:15.084 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:15.084 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:15.084 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:44:15.084 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:15.084 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:15.084 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:15.084 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:15.084 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:15.094 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:44:15.094 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:15.094 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:44:15.094 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:15.104 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:44:15.104 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:44:15.104 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:44:15.104 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:44:15.104 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36644 150\n [Camera]
17-03-18 02:44:15.304 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:15.704 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:15.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:15.704 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:15.704 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:15.704 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:15.704 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:15.704 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:15.704 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:44:15.714 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:15.714 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:44:15.894 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36644 783
17-03-18 02:44:16.044 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:16.104 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:44:16.104 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:44:16.104 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:16.104 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:16.104 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:44:16.104 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:44:16.114 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:44:16.114 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:16.114 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:16.124 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:44:16.234 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:16.234 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:16.234 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:16.234 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:16.234 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:44:16.234 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:16.234 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:16.244 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:16.244 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:16.244 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:44:16.424 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:44:16.424 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:16.424 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36644 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:44:16.434 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:44:16.434 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.166956707948178. ------
17-03-18 02:44:16.434 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:16.434 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17367 mm
17-03-18 02:44:16.434 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:16.434 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:44:16.554 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:16.554 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:16.554 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 02:44:16.554 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:16.554 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:16.554 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:44:16.554 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37937, sync = True, waitForSettling = False)
17-03-18 02:44:16.554 -07 000000501 INF: Z Motor: Moving to -0.173664 mm, started at -0.166957 mm, distance = -6.71 um
17-03-18 02:44:16.564 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:16.564 -07 000000629 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:44:16.574 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:44:16.574 -07 000000569 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:16.574 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:16.574 -07 000000569 INF: Y Motor: Moving 1351 steps-31
17-03-18 02:44:16.574 -07 000000501 INF: FPGA: Xmit ZDACW 37937\n [Z Motor]
17-03-18 02:44:16.574 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:44:16.584 -07 000000501 INF: FPGA: 'ZDACW 37937' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:44:16.584 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:16.584 -07 000000606 INF: FPGA: Recv ZDACR 37937
17-03-18 02:44:16.594 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:16.594 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:16.594 -07 000000501 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 02:44:16.644 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:44:16.644 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:44:16.644 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:16.644 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:44:16.644 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:44:16.644 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:16.644 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:16.644 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:44:16.644 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:16.654 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:44:16.764 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:16.764 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-18 02:44:16.964 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:44:16.964 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:44:17.014 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:17.014 -07 000000444 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:44:17.024 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:17.024 -07 000000569 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:17.024 -07 000000569 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:44:17.024 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 02:44:17.974 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:17.974 -07 000000512 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:44:17.984 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:17.984 -07 000000569 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:18.004 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:18.004 -07 000000569 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:18.004 -07 000000569 INF: Y Motor: Moved to 71.5181 after 1452 ms (table move)
17-03-18 02:44:18.014 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173664 mm (DAC = 37937)
17-03-18 02:44:18.014 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.014 -07 000000444 INF: FPGA: Recv ZSGSRD 36326
17-03-18 02:44:18.024 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:18.024 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.024 -07 000000424 INF: FPGA: Recv ZSGSRD 36317
17-03-18 02:44:18.034 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.034 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.034 -07 000000606 INF: FPGA: Recv ZSGSRD 36329
17-03-18 02:44:18.044 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.044 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.044 -07 000000461 INF: FPGA: Recv ZSGSRD 36328
17-03-18 02:44:18.054 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.054 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.054 -07 000000569 INF: FPGA: Recv ZSGSRD 36330
17-03-18 02:44:18.064 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.064 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.064 -07 000000444 INF: FPGA: Recv ZSGSRD 36327
17-03-18 02:44:18.074 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.074 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.074 -07 000000424 INF: FPGA: Recv ZSGSRD 36313
17-03-18 02:44:18.084 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.084 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.084 -07 000000606 INF: FPGA: Recv ZSGSRD 36320
17-03-18 02:44:18.094 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.094 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.094 -07 000000629 INF: FPGA: Recv ZSGSRD 36321
17-03-18 02:44:18.104 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.104 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:18.104 -07 000000455 INF: FPGA: Recv ZSGSRD 36325
17-03-18 02:44:18.114 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.114 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:18.114 -07 000000590 INF: FPGA: Recv ZPIEZORD 32408
17-03-18 02:44:18.124 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:18.124 -07 000000467 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.7 V.
17-03-18 02:44:18.124 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36324 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36326 (-172.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36313 (-172.7 uncal um), Max = 36330 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:44:18.124 -07 000000467 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36324, posNoise = 6, negNoise = 11
17-03-18 02:44:18.124 -07 000000467 INF: Z Motor: After move to -0.173664, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:18.124 -07 000000467 INF: Z Motor: Settle wait time = 1453 ms, measure time = 109 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:44:18.124 -07 000000467 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:18.174 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 02:44:18.174 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:18.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:18.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:18.174 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:18.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:18.174 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:18.174 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:18.174 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:18.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:18.174 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:18.184 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:18.184 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:44:18.184 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:44:18.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:18.234 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:18.534 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:18.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:18.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:18.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:18.574 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:18.574 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:18.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:44:18.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:44:18.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:18.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:44:18.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:44:18.674 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:18.674 -07 000000576 INF: Autofocus start
17-03-18 02:44:18.674 -07 000000576 INF: MeasureProfile start
17-03-18 02:44:18.674 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:18.684 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:18.684 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:18.684 -07 000000576 INF: MeasureProfile done
17-03-18 02:44:18.684 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:44:18.684 -07 000000576 INF: Autofocus finished
17-03-18 02:44:18.884 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:18.884 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:44:18.884 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.17367643384846. ----------
17-03-18 02:44:18.884 -07 000000610 INF: Cycle	103	Tile	15	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:18.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36452, sync = True, waitForSettling = True)
17-03-18 02:44:18.894 -07 000000610 INF: Z Motor: Moving to -0.166867 mm, started at -0.173676 mm, distance = 6.81 um
17-03-18 02:44:18.894 -07 000000610 INF: FPGA: Xmit ZDACW 36452\n [Z Motor]
17-03-18 02:44:18.894 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:44:18.904 -07 000000610 INF: FPGA: 'ZDACW 36452' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:18.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:18.904 -07 000000462 INF: FPGA: Recv ZDACR 36452
17-03-18 02:44:18.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:18.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:19.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.064 -07 000000569 INF: FPGA: Recv ZSGSRD 35262
17-03-18 02:44:19.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:19.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.074 -07 000000606 INF: FPGA: Recv ZSGSRD 35271
17-03-18 02:44:19.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.084 -07 000000502 INF: FPGA: Recv ZSGSRD 35267
17-03-18 02:44:19.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.094 -07 000000629 INF: FPGA: Recv ZSGSRD 35264
17-03-18 02:44:19.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.104 -07 000000461 INF: FPGA: Recv ZSGSRD 35264
17-03-18 02:44:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.114 -07 000000455 INF: FPGA: Recv ZSGSRD 35272
17-03-18 02:44:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.124 -07 000000430 INF: FPGA: Recv ZSGSRD 35258
17-03-18 02:44:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.134 -07 000000462 INF: FPGA: Recv ZSGSRD 35265
17-03-18 02:44:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.144 -07 000000626 INF: FPGA: Recv ZSGSRD 35266
17-03-18 02:44:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:19.154 -07 000000424 INF: FPGA: Recv ZSGSRD 35268
17-03-18 02:44:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:19.164 -07 000000590 INF: FPGA: Recv ZPIEZORD 30983
17-03-18 02:44:19.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:19.174 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.4 V.
17-03-18 02:44:19.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35266 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35266 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35258 (-166.0 uncal um), Max = 35272 (-166.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:44:19.174 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35266, posNoise = 6, negNoise = 8
17-03-18 02:44:19.174 -07 000000610 INF: Z Motor: After move to -0.166867, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:19.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:44:19.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:19.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:19.174 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:19.174 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:19.174 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:19.174 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:19.174 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:19.174 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:19.174 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:19.174 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:19.174 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:19.174 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:19.184 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:44:19.184 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:19.184 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:44:19.184 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:19.194 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:44:19.194 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:44:19.194 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:44:19.194 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:44:19.194 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36629 150\n [Camera]
17-03-18 02:44:19.394 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:19.784 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:19.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:19.794 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:19.794 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:19.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:19.794 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:19.794 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:19.794 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:44:19.794 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:19.794 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:44:19.984 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36629 783
17-03-18 02:44:20.134 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:20.194 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:44:20.194 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:44:20.194 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:20.194 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:20.194 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:44:20.194 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:44:20.194 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:44:20.194 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:20.194 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:20.204 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:44:20.234 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.014009,
17-03-18 02:44:20.324 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:44:20.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:44:20.324 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:20.324 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:20.324 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:44:20.334 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:44:20.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:44:20.334 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:20.334 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:20.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:44:20.514 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:20.514 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:20.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36629 150' command took 2 ms to send, 1316 ms to get response, and 1324 ms overall
17-03-18 02:44:20.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:44:20.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.166879617402477. ------
17-03-18 02:44:20.524 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:20.524 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17327 mm
17-03-18 02:44:20.524 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:20.524 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:44:20.524 -07 000000579 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 02:44:20.524 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37852, sync = True, waitForSettling = False)
17-03-18 02:44:20.524 -07 000000502 INF: Z Motor: Moving to -0.173275 mm, started at -0.166880 mm, distance = -6.40 um
17-03-18 02:44:20.524 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:20.534 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:20.534 -07 000000502 INF: FPGA: Xmit ZDACW 37852\n [Z Motor]
17-03-18 02:44:20.534 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:44:20.544 -07 000000502 INF: FPGA: 'ZDACW 37852' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:44:20.544 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:20.544 -07 000000462 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:44:20.554 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:20.554 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:44:20.554 -07 000000579 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:20.554 -07 000000579 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:20.554 -07 000000579 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:44:20.564 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:20.564 -07 000000561 INF: FPGA: Recv ZDACR 37852
17-03-18 02:44:20.574 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:44:20.574 -07 000000502 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:44:20.574 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:20.724 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:44:20.734 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:44:20.734 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:20.734 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:44:20.734 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:44:20.734 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:20.734 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:20.734 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:44:20.734 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:44:20.744 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:44:20.754 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:20.754 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:44:20.944 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:44:20.944 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:44:20.994 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:20.994 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:44:21.004 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:44:21.004 -07 000000579 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:21.004 -07 000000579 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:44:21.004 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.845 mm, average velocity = 2.149 mm/sec
17-03-18 02:44:21.504 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:21.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:21.954 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:21.954 -07 000000591 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:44:21.964 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:21.964 -07 000000579 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:21.984 -07 000000579 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:21.984 -07 000000579 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:21.984 -07 000000579 INF: Y Motor: Moved to 72.3491 after 1464 ms (table move)
17-03-18 02:44:21.994 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173275 mm (DAC = 37852)
17-03-18 02:44:21.994 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:21.994 -07 000000629 INF: FPGA: Recv ZSGSRD 36262
17-03-18 02:44:22.004 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:22.004 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:22.004 -07 000000590 INF: FPGA: Recv ZSGSRD 36262
17-03-18 02:44:22.014 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.014 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:22.014 -07 000000576 INF: FPGA: Recv ZSGSRD 36266
17-03-18 02:44:22.024 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.024 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:22.024 -07 000000461 INF: FPGA: Recv ZSGSRD 36265
17-03-18 02:44:22.034 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.034 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:22.034 -07 000000591 INF: FPGA: Recv ZSGSRD 36263
17-03-18 02:44:22.044 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.044 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:22.044 -07 000000512 INF: FPGA: Recv ZSGSRD 36261
17-03-18 02:44:22.054 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.054 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:22.054 -07 000000629 INF: FPGA: Recv ZSGSRD 36260
17-03-18 02:44:22.064 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.064 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:22.064 -07 000000579 INF: FPGA: Recv ZSGSRD 36262
17-03-18 02:44:22.074 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.074 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:22.074 -07 000000576 INF: FPGA: Recv ZSGSRD 36264
17-03-18 02:44:22.084 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.084 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:22.084 -07 000000455 INF: FPGA: Recv ZSGSRD 36262
17-03-18 02:44:22.094 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.094 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:22.094 -07 000000591 INF: FPGA: Recv ZPIEZORD 32338
17-03-18 02:44:22.104 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.104 -07 000000424 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -8.7 V.
17-03-18 02:44:22.104 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36263 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36262 (-172.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36260 (-172.4 uncal um), Max = 36266 (-172.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:44:22.104 -07 000000424 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36263, posNoise = 3, negNoise = 3
17-03-18 02:44:22.104 -07 000000424 INF: Z Motor: After move to -0.173275, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:22.104 -07 000000424 INF: Z Motor: Settle wait time = 1467 ms, measure time = 108 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:44:22.104 -07 000000424 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:22.154 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:44:22.154 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:22.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:22.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:22.154 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:22.154 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:22.154 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:22.154 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:22.154 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:44:22.154 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:22.164 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:22.164 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:22.164 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:44:22.164 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:44:22.174 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:22.214 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:22.514 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:22.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:22.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:22.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:44:22.554 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:22.554 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:22.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:44:22.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:44:22.634 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:22.634 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:44:22.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:44:22.654 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:22.654 -07 000000424 INF: Autofocus start
17-03-18 02:44:22.654 -07 000000424 INF: MeasureProfile start
17-03-18 02:44:22.654 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:22.664 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:22.664 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:22.664 -07 000000424 INF: MeasureProfile done
17-03-18 02:44:22.664 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:44:22.664 -07 000000424 INF: Autofocus finished
17-03-18 02:44:22.864 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:22.864 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 02:44:22.864 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173284556907813. ----------
17-03-18 02:44:22.874 -07 000000610 INF: Cycle	103	Tile	16	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:22.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36367, sync = True, waitForSettling = True)
17-03-18 02:44:22.874 -07 000000610 INF: Z Motor: Moving to -0.166477 mm, started at -0.173285 mm, distance = 6.81 um
17-03-18 02:44:22.874 -07 000000610 INF: FPGA: Xmit ZDACW 36367\n [Z Motor]
17-03-18 02:44:22.874 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:44:22.884 -07 000000610 INF: FPGA: 'ZDACW 36367' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:22.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:22.884 -07 000000579 INF: FPGA: Recv ZDACR 36367
17-03-18 02:44:22.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:22.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:23.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.044 -07 000000444 INF: FPGA: Recv ZSGSRD 35201
17-03-18 02:44:23.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.054 -07 000000626 INF: FPGA: Recv ZSGSRD 35202
17-03-18 02:44:23.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.064 -07 000000462 INF: FPGA: Recv ZSGSRD 35206
17-03-18 02:44:23.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.074 -07 000000467 INF: FPGA: Recv ZSGSRD 35206
17-03-18 02:44:23.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.084 -07 000000462 INF: FPGA: Recv ZSGSRD 35202
17-03-18 02:44:23.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.094 -07 000000591 INF: FPGA: Recv ZSGSRD 35207
17-03-18 02:44:23.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:23.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.104 -07 000000462 INF: FPGA: Recv ZSGSRD 35211
17-03-18 02:44:23.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.114 -07 000000461 INF: FPGA: Recv ZSGSRD 35209
17-03-18 02:44:23.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.124 -07 000000606 INF: FPGA: Recv ZSGSRD 35199
17-03-18 02:44:23.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:23.134 -07 000000590 INF: FPGA: Recv ZSGSRD 35201
17-03-18 02:44:23.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:23.144 -07 000000424 INF: FPGA: Recv ZPIEZORD 30947
17-03-18 02:44:23.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:23.154 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.4 V.
17-03-18 02:44:23.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35204 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35204 (-165.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35199 (-165.6 uncal um), Max = 35211 (-165.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:44:23.154 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35204, posNoise = 7, negNoise = 5
17-03-18 02:44:23.154 -07 000000610 INF: Z Motor: After move to -0.166477, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:23.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:44:23.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:23.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:23.154 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:23.154 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:23.154 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:23.154 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:23.154 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:44:23.154 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:23.154 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:23.164 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:23.164 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:44:23.164 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:23.164 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:44:23.164 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:23.164 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:44:23.164 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:23.164 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:44:23.164 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:44:23.174 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:44:23.174 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:44:23.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36543 150\n [Camera]
17-03-18 02:44:23.374 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:23.774 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:23.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:23.774 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:23.774 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:23.774 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:44:23.774 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:23.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:23.774 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:23.774 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:23.774 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:44:23.964 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36543 784
17-03-18 02:44:24.114 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:24.154 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:44:24.154 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:44:24.154 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:24.154 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:24.164 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:44:24.164 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:44:24.164 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:24.164 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:44:24.164 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:24.164 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:44:24.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:24.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:24.304 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:24.304 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:24.304 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:44:24.314 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:24.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:24.314 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:24.314 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:24.314 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:44:24.494 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:24.494 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:24.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36543 150' command took 2 ms to send, 1319 ms to get response, and 1324 ms overall
17-03-18 02:44:24.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:44:24.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166481316249688. ------
17-03-18 02:44:24.504 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:24.504 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17306 mm
17-03-18 02:44:24.504 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:24.504 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:24.504 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:44:24.504 -07 000000629 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:44:24.504 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37804, sync = True, waitForSettling = False)
17-03-18 02:44:24.504 -07 000000576 INF: Z Motor: Moving to -0.173056 mm, started at -0.166481 mm, distance = -6.57 um
17-03-18 02:44:24.514 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:44:24.514 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:24.514 -07 000000618 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:44:24.524 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:24.644 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:24.644 -07 000000629 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:24.644 -07 000000629 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:24.644 -07 000000629 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:44:24.654 -07 000000576 INF: FPGA: Xmit ZDACW 37804\n [Z Motor]
17-03-18 02:44:24.654 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:44:24.664 -07 000000576 INF: FPGA: 'ZDACW 37804' command took 0 ms to send, 0 ms to get response, and 150 ms overall
17-03-18 02:44:24.664 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:24.674 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:24.674 -07 000000561 INF: FPGA: Recv ZDACR 37804
17-03-18 02:44:24.684 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:44:24.684 -07 000000576 INF: Z Motor: MoveAbsStepped took 170 ms (did NOT wait for settling yet))
17-03-18 02:44:24.714 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:44:24.714 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:44:24.714 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:24.714 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:44:24.714 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:44:24.714 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:24.714 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:24.724 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:44:24.724 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:44:24.724 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:44:24.844 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:24.844 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 335 ms overall
17-03-18 02:44:25.044 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:44:25.044 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 392 ms overall
17-03-18 02:44:25.084 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:25.094 -07 000000430 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:44:25.094 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:44:25.094 -07 000000629 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:25.094 -07 000000629 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 02:44:25.094 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.146 mm/sec
17-03-18 02:44:25.594 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.023489,
17-03-18 02:44:26.044 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:26.044 -07 000000444 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:44:26.054 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:26.054 -07 000000629 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:26.074 -07 000000629 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:26.074 -07 000000629 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:44:26.074 -07 000000629 INF: Y Motor: Moved to 73.1758 after 1570 ms (table move)
17-03-18 02:44:26.084 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173056 mm (DAC = 37804)
17-03-18 02:44:26.084 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.084 -07 000000462 INF: FPGA: Recv ZSGSRD 36227
17-03-18 02:44:26.094 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:26.094 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.094 -07 000000576 INF: FPGA: Recv ZSGSRD 36228
17-03-18 02:44:26.104 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.104 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.104 -07 000000444 INF: FPGA: Recv ZSGSRD 36235
17-03-18 02:44:26.114 -07 000000467 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.114 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.114 -07 000000461 INF: FPGA: Recv ZSGSRD 36225
17-03-18 02:44:26.124 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.124 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.124 -07 000000512 INF: FPGA: Recv ZSGSRD 36224
17-03-18 02:44:26.134 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.134 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.134 -07 000000501 INF: FPGA: Recv ZSGSRD 36231
17-03-18 02:44:26.144 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.144 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.144 -07 000000626 INF: FPGA: Recv ZSGSRD 36235
17-03-18 02:44:26.154 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.154 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.154 -07 000000606 INF: FPGA: Recv ZSGSRD 36232
17-03-18 02:44:26.164 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.164 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.164 -07 000000591 INF: FPGA: Recv ZSGSRD 36221
17-03-18 02:44:26.174 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.174 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:26.174 -07 000000512 INF: FPGA: Recv ZSGSRD 36233
17-03-18 02:44:26.184 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.184 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:26.184 -07 000000424 INF: FPGA: Recv ZPIEZORD 32303
17-03-18 02:44:26.194 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.194 -07 000000467 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.7 V.
17-03-18 02:44:26.194 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36229 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36230 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36221 (-172.1 uncal um), Max = 36235 (-172.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:44:26.194 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36229, posNoise = 6, negNoise = 8
17-03-18 02:44:26.194 -07 000000467 INF: Z Motor: After move to -0.173056, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:26.194 -07 000000467 INF: Z Motor: Settle wait time = 1573 ms, measure time = 107 ms (allowed 150 ms), total time = 1680 ms
17-03-18 02:44:26.194 -07 000000467 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:26.244 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 02:44:26.244 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:26.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:26.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:26.244 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:26.244 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:26.244 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:26.244 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:26.244 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:26.244 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:26.254 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:44:26.254 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:26.254 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:44:26.254 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:44:26.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:26.304 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:26.504 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:26.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:26.604 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:26.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:26.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:26.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:26.644 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:26.644 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:26.644 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 387 ms overall
17-03-18 02:44:26.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:44:26.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:26.724 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:44:26.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:44:26.744 -07 000000591 INF: Autofocus start
17-03-18 02:44:26.744 -07 000000591 INF: MeasureProfile start
17-03-18 02:44:26.744 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:26.744 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:26.754 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:44:26.754 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:26.754 -07 000000591 INF: MeasureProfile done
17-03-18 02:44:26.754 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:44:26.754 -07 000000591 INF: Autofocus finished
17-03-18 02:44:26.954 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:26.954 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:26.954 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173066133694993. ----------
17-03-18 02:44:26.954 -07 000000610 INF: Cycle	103	Tile	17	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:26.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36301, sync = True, waitForSettling = True)
17-03-18 02:44:26.964 -07 000000610 INF: Z Motor: Moving to -0.166175 mm, started at -0.173066 mm, distance = 6.89 um
17-03-18 02:44:26.964 -07 000000610 INF: FPGA: Xmit ZDACW 36301\n [Z Motor]
17-03-18 02:44:26.964 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:44:26.974 -07 000000610 INF: FPGA: 'ZDACW 36301' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:26.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:26.974 -07 000000467 INF: FPGA: Recv ZDACR 36301
17-03-18 02:44:26.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:26.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:27.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.134 -07 000000430 INF: FPGA: Recv ZSGSRD 35156
17-03-18 02:44:27.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.144 -07 000000512 INF: FPGA: Recv ZSGSRD 35158
17-03-18 02:44:27.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.154 -07 000000430 INF: FPGA: Recv ZSGSRD 35158
17-03-18 02:44:27.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.164 -07 000000424 INF: FPGA: Recv ZSGSRD 35162
17-03-18 02:44:27.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.174 -07 000000579 INF: FPGA: Recv ZSGSRD 35158
17-03-18 02:44:27.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.184 -07 000000455 INF: FPGA: Recv ZSGSRD 35159
17-03-18 02:44:27.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.194 -07 000000501 INF: FPGA: Recv ZSGSRD 35162
17-03-18 02:44:27.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.204 -07 000000629 INF: FPGA: Recv ZSGSRD 35161
17-03-18 02:44:27.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.214 -07 000000618 INF: FPGA: Recv ZSGSRD 35150
17-03-18 02:44:27.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:27.224 -07 000000444 INF: FPGA: Recv ZSGSRD 35162
17-03-18 02:44:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:27.234 -07 000000502 INF: FPGA: Recv ZPIEZORD 30893
17-03-18 02:44:27.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:27.244 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.4 V.
17-03-18 02:44:27.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35159 (-165.3 uncal um), Error = 0.8 uncal um, Median = 35158 (-165.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35150 (-165.3 uncal um), Max = 35162 (-165.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:44:27.244 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35159, posNoise = 3, negNoise = 9
17-03-18 02:44:27.244 -07 000000610 INF: Z Motor: After move to -0.166175, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:27.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:44:27.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:27.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:27.244 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:27.244 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:27.244 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:27.244 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:27.244 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:27.244 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:27.244 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:27.244 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:27.244 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:27.244 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:27.254 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:44:27.254 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:27.254 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:44:27.254 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:27.264 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:44:27.264 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:44:27.264 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:44:27.264 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:44:27.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36478 150\n [Camera]
17-03-18 02:44:27.464 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:27.864 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:27.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:27.864 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:27.864 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:27.864 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:44:27.864 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:27.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:27.864 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:27.874 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:27.874 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:44:28.054 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36478 783
17-03-18 02:44:28.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:28.264 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:44:28.264 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:44:28.264 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:28.264 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:28.264 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:44:28.274 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:44:28.274 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:44:28.274 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:28.274 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:28.284 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:44:28.394 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:28.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:28.394 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:28.394 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:28.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:28.394 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:28.394 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:44:28.394 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:28.394 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:28.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:44:28.584 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:28.584 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:28.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36478 150' command took 2 ms to send, 1317 ms to get response, and 1324 ms overall
17-03-18 02:44:28.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:44:28.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166192226703308. ------
17-03-18 02:44:28.594 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:28.594 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17251 mm
17-03-18 02:44:28.594 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:28.594 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:44:28.594 -07 000000444 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 02:44:28.594 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37685, sync = True, waitForSettling = False)
17-03-18 02:44:28.714 -07 000000455 INF: Z Motor: Moving to -0.172511 mm, started at -0.166192 mm, distance = -6.32 um
17-03-18 02:44:28.714 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:28.714 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-18 02:44:28.714 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:28.724 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:28.724 -07 000000576 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:44:28.724 -07 000000444 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 02:44:28.724 -07 000000444 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:28.724 -07 000000444 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:28.724 -07 000000444 INF: Y Motor: Moving 1355 steps-35
17-03-18 02:44:28.734 -07 000000455 INF: FPGA: Xmit ZDACW 37685\n [Z Motor]
17-03-18 02:44:28.734 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:44:28.744 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:28.744 -07 000000455 INF: FPGA: 'ZDACW 37685' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:44:28.754 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:28.754 -07 000000501 INF: FPGA: Recv ZDACR 37685
17-03-18 02:44:28.764 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:44:28.764 -07 000000455 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:44:28.804 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:44:28.804 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:44:28.804 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:44:28.804 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:44:28.804 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:28.804 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:28.804 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:28.804 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:44:28.804 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:44:28.814 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:44:28.924 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:28.924 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 205 ms overall
17-03-18 02:44:29.114 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:44:29.114 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-18 02:44:29.154 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:29.154 -07 000000502 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:44:29.164 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:44:29.164 -07 000000444 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:29.164 -07 000000444 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:44:29.164 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-18 02:44:30.114 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:30.114 -07 000000579 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:44:30.124 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.124 -07 000000444 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:30.164 -07 000000444 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:30.164 -07 000000444 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:30.164 -07 000000444 INF: Y Motor: Moved to 74.0078 after 1564 ms (table move)
17-03-18 02:44:30.164 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172511 mm (DAC = 37685)
17-03-18 02:44:30.164 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.164 -07 000000569 INF: FPGA: Recv ZSGSRD 36142
17-03-18 02:44:30.174 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:44:30.174 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.174 -07 000000502 INF: FPGA: Recv ZSGSRD 36149
17-03-18 02:44:30.184 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.184 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.184 -07 000000576 INF: FPGA: Recv ZSGSRD 36149
17-03-18 02:44:30.194 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.194 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.194 -07 000000455 INF: FPGA: Recv ZSGSRD 36145
17-03-18 02:44:30.204 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.204 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.204 -07 000000444 INF: FPGA: Recv ZSGSRD 36134
17-03-18 02:44:30.214 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.214 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.214 -07 000000561 INF: FPGA: Recv ZSGSRD 36141
17-03-18 02:44:30.224 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.224 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.224 -07 000000590 INF: FPGA: Recv ZSGSRD 36141
17-03-18 02:44:30.234 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.234 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.234 -07 000000629 INF: FPGA: Recv ZSGSRD 36138
17-03-18 02:44:30.244 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.244 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.244 -07 000000455 INF: FPGA: Recv ZSGSRD 36150
17-03-18 02:44:30.254 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.254 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:30.254 -07 000000462 INF: FPGA: Recv ZSGSRD 36141
17-03-18 02:44:30.264 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.264 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:30.264 -07 000000579 INF: FPGA: Recv ZPIEZORD 32184
17-03-18 02:44:30.274 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:30.274 -07 000000618 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.750 V. Piezo Error = -8.8 V.
17-03-18 02:44:30.274 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36143 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36142 (-171.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36134 (-171.6 uncal um), Max = 36150 (-171.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:44:30.274 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36143, posNoise = 7, negNoise = 9
17-03-18 02:44:30.274 -07 000000618 INF: Z Motor: After move to -0.172511, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:30.274 -07 000000618 INF: Z Motor: Settle wait time = 1448 ms, measure time = 105 ms (allowed 150 ms), total time = 1553 ms
17-03-18 02:44:30.274 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:30.324 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-18 02:44:30.324 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:30.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:30.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:30.324 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:30.324 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:30.324 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:30.324 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:30.324 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:30.334 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:30.334 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:30.334 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:30.334 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:44:30.344 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:44:30.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:30.384 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:30.684 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:30.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:30.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:30.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:30.724 -07 000000467 INF: FPGA: Recv @CAMSNAP 382
17-03-18 02:44:30.724 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:30.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 386 ms overall
17-03-18 02:44:30.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:44:30.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:30.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:44:30.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:44:30.824 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:30.824 -07 000000590 INF: Autofocus start
17-03-18 02:44:30.824 -07 000000590 INF: MeasureProfile start
17-03-18 02:44:30.824 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:30.834 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:30.834 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:30.834 -07 000000590 INF: MeasureProfile done
17-03-18 02:44:30.834 -07 000000590 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:44:30.834 -07 000000590 INF: Autofocus finished
17-03-18 02:44:30.954 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.023489,
17-03-18 02:44:31.034 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:31.034 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:31.034 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172513651450801. ----------
17-03-18 02:44:31.034 -07 000000610 INF: Cycle	103	Tile	18	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:31.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36200, sync = True, waitForSettling = True)
17-03-18 02:44:31.044 -07 000000610 INF: Z Motor: Moving to -0.165713 mm, started at -0.172514 mm, distance = 6.80 um
17-03-18 02:44:31.044 -07 000000610 INF: FPGA: Xmit ZDACW 36200\n [Z Motor]
17-03-18 02:44:31.044 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:44:31.054 -07 000000610 INF: FPGA: 'ZDACW 36200' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:31.054 -07 000000569 INF: FPGA: Recv ZDACR 36200
17-03-18 02:44:31.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:31.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.214 -07 000000461 INF: FPGA: Recv ZSGSRD 35085
17-03-18 02:44:31.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:31.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.224 -07 000000618 INF: FPGA: Recv ZSGSRD 35087
17-03-18 02:44:31.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.234 -07 000000626 INF: FPGA: Recv ZSGSRD 35087
17-03-18 02:44:31.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35085
17-03-18 02:44:31.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.254 -07 000000591 INF: FPGA: Recv ZSGSRD 35084
17-03-18 02:44:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.264 -07 000000455 INF: FPGA: Recv ZSGSRD 35088
17-03-18 02:44:31.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.274 -07 000000590 INF: FPGA: Recv ZSGSRD 35087
17-03-18 02:44:31.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.284 -07 000000606 INF: FPGA: Recv ZSGSRD 35085
17-03-18 02:44:31.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.294 -07 000000430 INF: FPGA: Recv ZSGSRD 35087
17-03-18 02:44:31.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:31.304 -07 000000576 INF: FPGA: Recv ZSGSRD 35086
17-03-18 02:44:31.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:31.314 -07 000000569 INF: FPGA: Recv ZPIEZORD 30801
17-03-18 02:44:31.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:31.324 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.524 V. Piezo Error = -9.4 V.
17-03-18 02:44:31.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35086 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35086 (-164.9 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35084 (-164.8 uncal um), Max = 35088 (-164.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:44:31.324 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35086, posNoise = 2, negNoise = 2
17-03-18 02:44:31.324 -07 000000610 INF: Z Motor: After move to -0.165713, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:31.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:44:31.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:31.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:31.324 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:31.324 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:31.324 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:31.324 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:31.324 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:31.324 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:31.324 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:31.324 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:31.324 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:44:31.324 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:31.324 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:44:31.334 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:44:31.334 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:31.334 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:31.344 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:44:31.344 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:44:31.344 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:44:31.344 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:44:31.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36377 150\n [Camera]
17-03-18 02:44:31.504 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:31.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:31.544 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:31.944 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:31.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:31.944 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:31.944 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:31.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:31.944 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:31.944 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:31.944 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:44:31.944 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:31.944 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:44:32.134 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36377 783
17-03-18 02:44:32.284 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:32.344 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:44:32.344 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:44:32.344 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:32.344 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:44:32.344 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:44:32.344 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:32.344 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:32.344 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:44:32.344 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:32.354 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:44:32.474 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:32.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:32.474 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:32.474 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:32.474 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:44:32.474 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:32.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:32.474 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:32.474 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:32.474 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:44:32.664 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:44:32.664 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:32.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36377 150' command took 2 ms to send, 1319 ms to get response, and 1326 ms overall
17-03-18 02:44:32.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:44:32.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.16572325921696. ------
17-03-18 02:44:32.674 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:32.674 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17154 mm
17-03-18 02:44:32.674 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:32.674 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:32.674 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 37474, sync = True, waitForSettling = False)
17-03-18 02:44:32.674 -07 000000430 INF: Z Motor: Moving to -0.171545 mm, started at -0.165723 mm, distance = -5.82 um
17-03-18 02:44:32.674 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:44:32.674 -07 000000462 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 02:44:32.684 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:32.684 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:32.684 -07 000000576 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:44:32.694 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:44:32.694 -07 000000462 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:32.694 -07 000000462 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:32.694 -07 000000462 INF: Y Motor: Moving 1352 steps-30
17-03-18 02:44:32.694 -07 000000430 INF: FPGA: Xmit ZDACW 37474\n [Z Motor]
17-03-18 02:44:32.694 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:44:32.704 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:32.704 -07 000000430 INF: FPGA: 'ZDACW 37474' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:44:32.714 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:32.724 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:32.724 -07 000000512 INF: FPGA: Recv ZDACR 37474
17-03-18 02:44:32.734 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:44:32.734 -07 000000430 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:44:32.874 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:44:32.874 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:44:32.874 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:32.884 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:44:32.884 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:44:32.884 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:32.884 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:32.884 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:44:32.884 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:44:32.894 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:44:32.904 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:32.904 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:44:33.084 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:44:33.084 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:44:33.114 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:33.114 -07 000000591 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:44:33.124 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:44:33.124 -07 000000462 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:33.124 -07 000000462 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 02:44:33.124 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 02:44:34.074 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:34.074 -07 000000579 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:44:34.084 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.084 -07 000000462 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:34.094 -07 000000462 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:34.094 -07 000000462 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:34.104 -07 000000462 INF: Y Motor: Moved to 74.8311 after 1421 ms (table move)
17-03-18 02:44:34.104 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171545 mm (DAC = 37474)
17-03-18 02:44:34.104 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.104 -07 000000424 INF: FPGA: Recv ZSGSRD 35998
17-03-18 02:44:34.114 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:34.114 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.114 -07 000000455 INF: FPGA: Recv ZSGSRD 35989
17-03-18 02:44:34.124 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.124 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.124 -07 000000576 INF: FPGA: Recv ZSGSRD 35988
17-03-18 02:44:34.134 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.134 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.134 -07 000000444 INF: FPGA: Recv ZSGSRD 35990
17-03-18 02:44:34.144 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.144 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.144 -07 000000579 INF: FPGA: Recv ZSGSRD 35996
17-03-18 02:44:34.154 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.154 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.154 -07 000000424 INF: FPGA: Recv ZSGSRD 35993
17-03-18 02:44:34.164 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.164 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.164 -07 000000591 INF: FPGA: Recv ZSGSRD 35994
17-03-18 02:44:34.174 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.174 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.174 -07 000000576 INF: FPGA: Recv ZSGSRD 35999
17-03-18 02:44:34.184 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.184 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.184 -07 000000501 INF: FPGA: Recv ZSGSRD 35994
17-03-18 02:44:34.194 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.194 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:34.194 -07 000000512 INF: FPGA: Recv ZSGSRD 35989
17-03-18 02:44:34.204 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.204 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:34.204 -07 000000424 INF: FPGA: Recv ZPIEZORD 32002
17-03-18 02:44:34.214 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:34.214 -07 000000606 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.8 V.
17-03-18 02:44:34.214 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35993 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35994 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35988 (-170.6 uncal um), Max = 35999 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:44:34.214 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35993, posNoise = 6, negNoise = 5
17-03-18 02:44:34.214 -07 000000606 INF: Z Motor: After move to -0.171545, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:34.214 -07 000000606 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-18 02:44:34.214 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:34.264 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-18 02:44:34.264 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:34.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:34.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:34.264 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:34.264 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:34.264 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:34.264 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:34.264 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:34.264 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:34.274 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:34.274 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:34.274 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:44:34.274 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:44:34.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:34.334 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 02:44:34.624 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 02:44:34.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 02:44:34.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:34.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:44:34.664 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:34.664 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:34.664 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall
17-03-18 02:44:34.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:44:34.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:34.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:44:34.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:44:34.764 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:34.764 -07 000000591 INF: Autofocus start
17-03-18 02:44:34.764 -07 000000591 INF: MeasureProfile start
17-03-18 02:44:34.774 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:34.774 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:34.774 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:34.774 -07 000000591 INF: MeasureProfile done
17-03-18 02:44:34.774 -07 000000591 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:44:34.774 -07 000000591 INF: Autofocus finished
17-03-18 02:44:34.974 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:34.974 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:34.974 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171550019629537. ----------
17-03-18 02:44:34.984 -07 000000610 INF: Cycle	103	Tile	19	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:34.984 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35989, sync = True, waitForSettling = True)
17-03-18 02:44:34.984 -07 000000610 INF: Z Motor: Moving to -0.164747 mm, started at -0.171550 mm, distance = 6.80 um
17-03-18 02:44:34.984 -07 000000610 INF: FPGA: Xmit ZDACW 35989\n [Z Motor]
17-03-18 02:44:34.984 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:44:34.994 -07 000000610 INF: FPGA: 'ZDACW 35989' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:34.994 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:34.994 -07 000000606 INF: FPGA: Recv ZDACR 35989
17-03-18 02:44:35.004 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.004 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:35.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.154 -07 000000618 INF: FPGA: Recv ZSGSRD 34939
17-03-18 02:44:35.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:35.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.164 -07 000000512 INF: FPGA: Recv ZSGSRD 34936
17-03-18 02:44:35.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.174 -07 000000576 INF: FPGA: Recv ZSGSRD 34936
17-03-18 02:44:35.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.184 -07 000000590 INF: FPGA: Recv ZSGSRD 34934
17-03-18 02:44:35.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.194 -07 000000461 INF: FPGA: Recv ZSGSRD 34937
17-03-18 02:44:35.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.204 -07 000000467 INF: FPGA: Recv ZSGSRD 34935
17-03-18 02:44:35.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.214 -07 000000591 INF: FPGA: Recv ZSGSRD 34938
17-03-18 02:44:35.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.224 -07 000000561 INF: FPGA: Recv ZSGSRD 34943
17-03-18 02:44:35.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.234 -07 000000590 INF: FPGA: Recv ZSGSRD 34939
17-03-18 02:44:35.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:35.244 -07 000000576 INF: FPGA: Recv ZSGSRD 34934
17-03-18 02:44:35.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:35.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:35.254 -07 000000590 INF: FPGA: Recv ZPIEZORD 30640
17-03-18 02:44:35.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:35.264 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.492 V. Piezo Error = -9.5 V.
17-03-18 02:44:35.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34937 (-163.9 uncal um), Error = 0.8 uncal um, Median = 34936 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34934 (-163.9 uncal um), Max = 34943 (-163.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:44:35.264 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34937, posNoise = 6, negNoise = 3
17-03-18 02:44:35.264 -07 000000610 INF: Z Motor: After move to -0.164747, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:35.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:44:35.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:35.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:35.264 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:35.264 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:35.264 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:35.264 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:35.274 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:35.274 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:35.274 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:35.274 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:35.274 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:44:35.274 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:35.274 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:44:35.274 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:35.274 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:44:35.274 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:35.294 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:44:35.294 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:44:35.294 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:44:35.294 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:44:35.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36165 150\n [Camera]
17-03-18 02:44:35.494 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:35.894 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:35.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:35.894 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:35.894 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:35.894 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:44:35.894 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:35.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:35.894 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:35.894 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:35.894 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:44:36.084 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36165 783
17-03-18 02:44:36.234 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:36.284 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:44:36.284 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:44:36.284 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:36.294 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:44:36.294 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:44:36.294 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:36.294 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:36.294 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:44:36.294 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:36.304 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:44:36.314 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.99219,
17-03-18 02:44:36.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:36.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:36.424 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:36.424 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:36.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:44:36.434 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:36.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:36.434 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:36.434 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:36.434 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:44:36.504 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:36.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:36.734 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:36.734 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:36.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36165 150' command took 3 ms to send, 1435 ms to get response, and 1442 ms overall
17-03-18 02:44:36.834 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 02:44:36.834 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:44:36.834 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:36.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:44:36.834 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:44:36.834 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:36.834 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:36.844 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:44:36.844 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 02:44:36.844 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:44:36.844 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:44:36.884 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:44:36.884 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:44:36.924 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:44:36.924 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:44:36.934 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:44:36.934 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 02:44:36.944 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:36.944 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:44:37.444 -07 000000467 INF: FPGA: Recv EMIN
17-03-18 02:44:37.444 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:44:37.444 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:44:37.444 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-18 02:44:37.454 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:37.454 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:44:37.454 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164766051607838. ------
17-03-18 02:44:37.454 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:37.454 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13945 mm
17-03-18 02:44:37.454 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:37.464 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30462, sync = True, waitForSettling = False)
17-03-18 02:44:37.464 -07 000000629 INF: Z Motor: Moving to -0.139446 mm, started at -0.164766 mm, distance = 25.32 um
17-03-18 02:44:37.464 -07 000000629 INF: FPGA: Xmit ZDACW 30462\n [Z Motor]
17-03-18 02:44:37.464 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:37.464 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:44:37.464 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:44:37.464 -07 000000467 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 02:44:37.464 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:44:37.474 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:37.474 -07 000000629 INF: FPGA: 'ZDACW 30462' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:37.484 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:37.484 -07 000000462 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:44:37.494 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:44:37.494 -07 000000467 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:37.494 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:37.494 -07 000000424 INF: FPGA: Recv ZDACR 30462
17-03-18 02:44:37.494 -07 000000467 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:44:37.494 -07 000000467 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:44:37.504 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:44:37.504 -07 000000629 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:44:37.504 -07 000000467 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:44:37.674 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:37.674 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 02:44:39.134 -07 000000618 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:44:39.134 -07 000000467 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1620 ms to get response, and 1631 ms overall
17-03-18 02:44:39.134 -07 000000467 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:44:39.134 -07 000000467 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:44:39.134 -07 000000467 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1631 ms, distance = 14.918 mm, average velocity = 9.147 mm/sec
17-03-18 02:44:41.504 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:41.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:41.674 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.978563,
17-03-18 02:44:41.984 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:41.984 -07 000000606 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:44:41.994 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:41.994 -07 000000467 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:42.024 -07 000000467 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:42.024 -07 000000467 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 02:44:42.024 -07 000000467 INF: Y Motor: Moved to 59.9111 after 4566 ms
17-03-18 02:44:42.034 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139446 mm (DAC = 30462)
17-03-18 02:44:42.034 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.034 -07 000000626 INF: FPGA: Recv ZSGSRD 31001
17-03-18 02:44:42.044 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:42.044 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.044 -07 000000618 INF: FPGA: Recv ZSGSRD 30996
17-03-18 02:44:42.054 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.054 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.054 -07 000000591 INF: FPGA: Recv ZSGSRD 30998
17-03-18 02:44:42.064 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.064 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.064 -07 000000461 INF: FPGA: Recv ZSGSRD 30998
17-03-18 02:44:42.074 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.074 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.074 -07 000000462 INF: FPGA: Recv ZSGSRD 30989
17-03-18 02:44:42.084 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.084 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.084 -07 000000467 INF: FPGA: Recv ZSGSRD 30996
17-03-18 02:44:42.094 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.094 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.094 -07 000000618 INF: FPGA: Recv ZSGSRD 31001
17-03-18 02:44:42.104 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.104 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.104 -07 000000629 INF: FPGA: Recv ZSGSRD 30999
17-03-18 02:44:42.114 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.114 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.114 -07 000000501 INF: FPGA: Recv ZSGSRD 30997
17-03-18 02:44:42.124 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.124 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:42.124 -07 000000462 INF: FPGA: Recv ZSGSRD 30995
17-03-18 02:44:42.134 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.134 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:42.134 -07 000000467 INF: FPGA: Recv ZPIEZORD 26499
17-03-18 02:44:42.144 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:42.144 -07 000000455 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.648 V. Piezo Error = -9.9 V.
17-03-18 02:44:42.144 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30997 (-138.7 uncal um), Error = 0.8 uncal um, Median = 30998 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30989 (-138.6 uncal um), Max = 31001 (-138.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:44:42.144 -07 000000455 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30997, posNoise = 4, negNoise = 8
17-03-18 02:44:42.144 -07 000000455 INF: Z Motor: After move to -0.139446, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:42.144 -07 000000455 INF: Z Motor: Settle wait time = 4571 ms, measure time = 108 ms (allowed 150 ms), total time = 4679 ms
17-03-18 02:44:42.144 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:42.194 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4731 ms
17-03-18 02:44:42.194 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:42.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:42.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:42.194 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:42.194 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:42.194 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:42.194 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:42.194 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:42.194 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:44:42.214 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 02:44:42.214 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:42.224 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:42.224 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:42.224 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:44:42.224 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 02:44:42.234 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:42.274 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:42.574 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:42.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:42.574 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:42.574 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:42.614 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:42.614 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:42.614 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:44:42.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:44:42.694 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:42.694 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:44:42.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:44:42.714 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:42.714 -07 000000455 INF: Image SNR check: start
17-03-18 02:44:42.714 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:42.724 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:44:42.724 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:42.734 -07 000000455 INF: Image SNR check: pass  [peak (Max-Min)=128.68]
17-03-18 02:44:42.734 -07 000000455 INF: Autofocus start
17-03-18 02:44:42.734 -07 000000455 INF: MeasureProfile start
17-03-18 02:44:42.744 -07 000000455 INF: MeasureProfile done
17-03-18 02:44:42.744 -07 000000455 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:44:42.744 -07 000000455 INF: Autofocus finished
17-03-18 02:44:42.924 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:42.924 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:42.924 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139454655769299. ----------
17-03-18 02:44:42.924 -07 000000610 INF: Cycle	103	Tile	1	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:42.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28969, sync = True, waitForSettling = True)
17-03-18 02:44:42.934 -07 000000610 INF: Z Motor: Moving to -0.132612 mm, started at -0.139455 mm, distance = 6.84 um
17-03-18 02:44:42.934 -07 000000610 INF: FPGA: Xmit ZDACW 28969\n [Z Motor]
17-03-18 02:44:42.934 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:44:42.944 -07 000000610 INF: FPGA: 'ZDACW 28969' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:42.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:42.944 -07 000000461 INF: FPGA: Recv ZDACR 28969
17-03-18 02:44:42.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:42.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:43.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.104 -07 000000606 INF: FPGA: Recv ZSGSRD 29932
17-03-18 02:44:43.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.114 -07 000000424 INF: FPGA: Recv ZSGSRD 29934
17-03-18 02:44:43.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.124 -07 000000462 INF: FPGA: Recv ZSGSRD 29933
17-03-18 02:44:43.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.134 -07 000000591 INF: FPGA: Recv ZSGSRD 29927
17-03-18 02:44:43.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.144 -07 000000512 INF: FPGA: Recv ZSGSRD 29934
17-03-18 02:44:43.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.154 -07 000000629 INF: FPGA: Recv ZSGSRD 29930
17-03-18 02:44:43.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.164 -07 000000467 INF: FPGA: Recv ZSGSRD 29932
17-03-18 02:44:43.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.174 -07 000000430 INF: FPGA: Recv ZSGSRD 29932
17-03-18 02:44:43.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.184 -07 000000579 INF: FPGA: Recv ZSGSRD 29930
17-03-18 02:44:43.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:43.194 -07 000000461 INF: FPGA: Recv ZSGSRD 29938
17-03-18 02:44:43.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:43.204 -07 000000618 INF: FPGA: Recv ZPIEZORD 25392
17-03-18 02:44:43.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:43.214 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.420 V. Piezo Error = -10.0 V.
17-03-18 02:44:43.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29932 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29932 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29927 (-131.8 uncal um), Max = 29938 (-131.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:44:43.214 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29932, posNoise = 6, negNoise = 5
17-03-18 02:44:43.214 -07 000000610 INF: Z Motor: After move to -0.132612, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:43.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:44:43.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:43.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:43.214 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:43.214 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:43.214 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:43.214 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:43.214 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:43.214 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:43.224 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:43.224 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:43.224 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:44:43.224 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:44:43.224 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:43.224 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:43.234 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:44:43.234 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:44:43.244 -07 000000579 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 02:44:43.244 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:43.244 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:44:43.244 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:43.254 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:44:43.254 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 02:44:43.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29146 150\n [Camera]
17-03-18 02:44:43.464 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:43.854 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:43.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:43.854 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:43.864 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:43.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:43.864 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:43.864 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:43.864 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:44:43.874 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:43.874 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:44:44.054 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29146 783
17-03-18 02:44:44.194 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:44.254 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:44:44.254 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:44:44.254 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:44.254 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:44.254 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:44:44.254 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:44:44.254 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:44:44.254 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:44.264 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:44.264 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:44:44.394 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:44.394 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:44.394 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:44.394 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:44.394 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:44.394 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:44:44.394 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:44.394 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:44.394 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:44.394 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:44:44.584 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:44.584 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:44.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29146 150' command took 2 ms to send, 1313 ms to get response, and 1324 ms overall
17-03-18 02:44:44.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:44:44.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132612869838324. ------
17-03-18 02:44:44.714 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:44.714 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13904 mm
17-03-18 02:44:44.714 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:44.714 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:44.714 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:44:44.714 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 02:44:44.714 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30372, sync = True, waitForSettling = False)
17-03-18 02:44:44.714 -07 000000618 INF: Z Motor: Moving to -0.139034 mm, started at -0.132613 mm, distance = -6.42 um
17-03-18 02:44:44.724 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:44.724 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:44.724 -07 000000579 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:44:44.734 -07 000000618 INF: FPGA: Xmit ZDACW 30372\n [Z Motor]
17-03-18 02:44:44.734 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:44:44.734 -07 000000626 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:44.734 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:44.734 -07 000000626 INF: Y Motor: Moving 1330 steps2
17-03-18 02:44:44.734 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:44:44.744 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:44.744 -07 000000618 INF: FPGA: 'ZDACW 30372' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:44:44.754 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:44.764 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:44.764 -07 000000561 INF: FPGA: Recv ZDACR 30372
17-03-18 02:44:44.774 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:44:44.774 -07 000000618 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:44:44.794 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:44:44.794 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:44:44.794 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:44.794 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:44:44.794 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:44:44.794 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:44.804 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:44.804 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:44:44.804 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:44:44.804 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:44:44.944 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:44.944 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:44:45.134 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:44:45.134 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 02:44:45.164 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:45.174 -07 000000576 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:44:45.174 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 02:44:45.174 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:45.174 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:44:45.174 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.831 mm, average velocity = 2.079 mm/sec
17-03-18 02:44:46.124 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:46.124 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:44:46.134 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:46.134 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:46.164 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:46.164 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:46.164 -07 000000626 INF: Y Motor: Moved to 60.7329 after 1444 ms (table move)
17-03-18 02:44:46.164 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139034 mm (DAC = 30372)
17-03-18 02:44:46.164 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.164 -07 000000569 INF: FPGA: Recv ZSGSRD 30932
17-03-18 02:44:46.174 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:44:46.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.174 -07 000000606 INF: FPGA: Recv ZSGSRD 30927
17-03-18 02:44:46.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.184 -07 000000461 INF: FPGA: Recv ZSGSRD 30938
17-03-18 02:44:46.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.194 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.194 -07 000000502 INF: FPGA: Recv ZSGSRD 30937
17-03-18 02:44:46.204 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.204 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30931
17-03-18 02:44:46.214 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.214 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.214 -07 000000424 INF: FPGA: Recv ZSGSRD 30934
17-03-18 02:44:46.224 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.224 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.224 -07 000000462 INF: FPGA: Recv ZSGSRD 30934
17-03-18 02:44:46.234 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.234 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.234 -07 000000576 INF: FPGA: Recv ZSGSRD 30930
17-03-18 02:44:46.244 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.244 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.244 -07 000000502 INF: FPGA: Recv ZSGSRD 30926
17-03-18 02:44:46.254 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.254 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:46.254 -07 000000501 INF: FPGA: Recv ZSGSRD 30936
17-03-18 02:44:46.264 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.264 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:46.264 -07 000000606 INF: FPGA: Recv ZPIEZORD 26705
17-03-18 02:44:46.274 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:46.274 -07 000000591 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -9.3 V.
17-03-18 02:44:46.274 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30932 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30933 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30926 (-138.2 uncal um), Max = 30938 (-138.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:44:46.274 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30932, posNoise = 6, negNoise = 6
17-03-18 02:44:46.274 -07 000000591 INF: Z Motor: After move to -0.139034, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:46.274 -07 000000591 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-18 02:44:46.274 -07 000000591 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:46.324 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:44:46.324 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:46.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:46.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:46.324 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:46.324 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:46.324 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:46.324 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:46.324 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:46.324 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:46.334 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:44:46.334 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:46.344 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:44:46.344 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:44:46.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:46.394 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:46.504 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:46.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:46.694 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:46.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:46.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:46.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:46.734 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:46.734 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:46.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 02:44:46.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:44:46.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:46.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:44:46.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:44:46.834 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:46.834 -07 000000569 INF: Autofocus start
17-03-18 02:44:46.834 -07 000000569 INF: MeasureProfile start
17-03-18 02:44:46.834 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:46.844 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:46.844 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:46.844 -07 000000569 INF: MeasureProfile done
17-03-18 02:44:46.844 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:44:46.844 -07 000000569 INF: Autofocus finished
17-03-18 02:44:47.034 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.969015,
17-03-18 02:44:47.044 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:47.044 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:44:47.044 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139037081980085. ----------
17-03-18 02:44:47.044 -07 000000610 INF: Cycle	103	Tile	2	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:47.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28896, sync = True, waitForSettling = True)
17-03-18 02:44:47.054 -07 000000610 INF: Z Motor: Moving to -0.132277 mm, started at -0.139037 mm, distance = 6.76 um
17-03-18 02:44:47.064 -07 000000610 INF: FPGA: Xmit ZDACW 28896\n [Z Motor]
17-03-18 02:44:47.064 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:44:47.074 -07 000000610 INF: FPGA: 'ZDACW 28896' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:44:47.074 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:47.074 -07 000000430 INF: FPGA: Recv ZDACR 28896
17-03-18 02:44:47.084 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:47.084 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:47.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.234 -07 000000461 INF: FPGA: Recv ZSGSRD 29881
17-03-18 02:44:47.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:47.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.244 -07 000000629 INF: FPGA: Recv ZSGSRD 29881
17-03-18 02:44:47.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.254 -07 000000430 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:44:47.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.264 -07 000000618 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:44:47.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.274 -07 000000606 INF: FPGA: Recv ZSGSRD 29881
17-03-18 02:44:47.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.284 -07 000000461 INF: FPGA: Recv ZSGSRD 29884
17-03-18 02:44:47.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.294 -07 000000606 INF: FPGA: Recv ZSGSRD 29882
17-03-18 02:44:47.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.304 -07 000000462 INF: FPGA: Recv ZSGSRD 29883
17-03-18 02:44:47.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.314 -07 000000629 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:44:47.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:47.324 -07 000000430 INF: FPGA: Recv ZSGSRD 29882
17-03-18 02:44:47.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:47.334 -07 000000501 INF: FPGA: Recv ZPIEZORD 25352
17-03-18 02:44:47.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:47.344 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.9 V.
17-03-18 02:44:47.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29881 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29881 (-131.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29878 (-131.5 uncal um), Max = 29884 (-131.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:44:47.344 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29881, posNoise = 3, negNoise = 3
17-03-18 02:44:47.344 -07 000000610 INF: Z Motor: After move to -0.132277, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:47.344 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 02:44:47.344 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:47.344 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:47.344 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:47.344 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:47.344 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:47.344 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:47.344 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:47.344 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:47.344 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:47.344 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:47.344 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:47.344 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:47.354 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:44:47.354 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:47.354 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:44:47.354 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:47.364 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:44:47.364 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:44:47.364 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:44:47.364 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:44:47.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29073 150\n [Camera]
17-03-18 02:44:47.564 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:47.964 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:47.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:47.964 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:47.964 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:47.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:47.974 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:47.974 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:47.974 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:44:47.974 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:47.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:44:48.154 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29073 783
17-03-18 02:44:48.304 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:48.364 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:44:48.364 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:44:48.364 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:48.364 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:44:48.364 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:44:48.364 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:48.364 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:48.374 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:48.374 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:44:48.374 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:44:48.504 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:48.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:48.504 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:48.504 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:48.504 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:44:48.504 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:48.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:48.504 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:48.504 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:48.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:44:48.694 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:48.694 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:48.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29073 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-18 02:44:48.694 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:44:48.694 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132285235019094. ------
17-03-18 02:44:48.694 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:48.694 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13900 mm
17-03-18 02:44:48.694 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:48.694 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:44:48.694 -07 000000461 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:44:48.694 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:48.704 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:44:48.704 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:48.704 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30364, sync = True, waitForSettling = False)
17-03-18 02:44:48.704 -07 000000618 INF: Z Motor: Moving to -0.138997 mm, started at -0.132285 mm, distance = -6.71 um
17-03-18 02:44:48.714 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:48.714 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:44:48.724 -07 000000618 INF: FPGA: Xmit ZDACW 30364\n [Z Motor]
17-03-18 02:44:48.724 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:44:48.724 -07 000000461 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:48.724 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:44:48.724 -07 000000461 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:48.724 -07 000000461 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:44:48.734 -07 000000618 INF: FPGA: 'ZDACW 30364' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:44:48.734 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:48.734 -07 000000569 INF: FPGA: Recv ZDACR 30364
17-03-18 02:44:48.744 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:48.744 -07 000000618 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:44:48.744 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:48.904 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:48.904 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:48.904 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:44:48.904 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:44:48.904 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:48.904 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 02:44:48.904 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:44:48.904 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:48.914 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:48.914 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:44:48.914 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:44:48.924 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:44:49.114 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:44:49.114 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-18 02:44:49.164 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:49.164 -07 000000591 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:44:49.174 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:49.174 -07 000000461 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:49.174 -07 000000461 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:44:49.174 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-18 02:44:50.124 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:50.124 -07 000000467 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:44:50.134 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:50.134 -07 000000461 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:50.154 -07 000000461 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:50.154 -07 000000461 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:50.154 -07 000000461 INF: Y Motor: Moved to 61.5640 after 1460 ms (table move)
17-03-18 02:44:50.164 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138997 mm (DAC = 30364)
17-03-18 02:44:50.164 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.164 -07 000000561 INF: FPGA: Recv ZSGSRD 30936
17-03-18 02:44:50.174 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:50.174 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.174 -07 000000502 INF: FPGA: Recv ZSGSRD 30928
17-03-18 02:44:50.184 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.184 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.184 -07 000000430 INF: FPGA: Recv ZSGSRD 30931
17-03-18 02:44:50.194 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.194 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.194 -07 000000455 INF: FPGA: Recv ZSGSRD 30932
17-03-18 02:44:50.204 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.204 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.204 -07 000000626 INF: FPGA: Recv ZSGSRD 30928
17-03-18 02:44:50.214 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.214 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.214 -07 000000591 INF: FPGA: Recv ZSGSRD 30928
17-03-18 02:44:50.224 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.224 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.224 -07 000000629 INF: FPGA: Recv ZSGSRD 30927
17-03-18 02:44:50.234 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.234 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.234 -07 000000462 INF: FPGA: Recv ZSGSRD 30921
17-03-18 02:44:50.244 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.244 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.244 -07 000000569 INF: FPGA: Recv ZSGSRD 30926
17-03-18 02:44:50.254 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.254 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:50.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30928
17-03-18 02:44:50.264 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.264 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:50.264 -07 000000591 INF: FPGA: Recv ZPIEZORD 26763
17-03-18 02:44:50.274 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:50.274 -07 000000576 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -9.2 V.
17-03-18 02:44:50.274 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30928 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30928 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30921 (-138.2 uncal um), Max = 30936 (-138.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:44:50.274 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30928, posNoise = 8, negNoise = 7
17-03-18 02:44:50.274 -07 000000576 INF: Z Motor: After move to -0.138997, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:50.274 -07 000000576 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:44:50.274 -07 000000576 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:50.324 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:44:50.324 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:50.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:50.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:50.324 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:50.324 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:50.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:50.324 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:50.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:50.324 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:50.334 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:50.334 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:50.344 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:44:50.344 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:44:50.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:50.394 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:50.694 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:50.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:50.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:50.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:44:50.734 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:50.734 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:50.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 373 ms to get response, and 384 ms overall
17-03-18 02:44:50.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:44:50.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:50.814 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:44:50.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:44:50.834 -07 000000467 INF: Autofocus start
17-03-18 02:44:50.834 -07 000000467 INF: MeasureProfile start
17-03-18 02:44:50.834 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:50.834 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:50.844 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:50.844 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:50.844 -07 000000467 INF: MeasureProfile done
17-03-18 02:44:50.844 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:44:50.844 -07 000000467 INF: Autofocus finished
17-03-18 02:44:51.044 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:51.044 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:51.044 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139011385131518. ----------
17-03-18 02:44:51.044 -07 000000610 INF: Cycle	103	Tile	3	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:51.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28888, sync = True, waitForSettling = True)
17-03-18 02:44:51.054 -07 000000610 INF: Z Motor: Moving to -0.132241 mm, started at -0.139011 mm, distance = 6.77 um
17-03-18 02:44:51.054 -07 000000610 INF: FPGA: Xmit ZDACW 28888\n [Z Motor]
17-03-18 02:44:51.054 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:44:51.064 -07 000000610 INF: FPGA: 'ZDACW 28888' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:51.064 -07 000000561 INF: FPGA: Recv ZDACR 28888
17-03-18 02:44:51.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:51.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.224 -07 000000444 INF: FPGA: Recv ZSGSRD 29873
17-03-18 02:44:51.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:51.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.234 -07 000000590 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:44:51.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.244 -07 000000461 INF: FPGA: Recv ZSGSRD 29876
17-03-18 02:44:51.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.254 -07 000000618 INF: FPGA: Recv ZSGSRD 29871
17-03-18 02:44:51.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.264 -07 000000590 INF: FPGA: Recv ZSGSRD 29879
17-03-18 02:44:51.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.274 -07 000000576 INF: FPGA: Recv ZSGSRD 29877
17-03-18 02:44:51.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.284 -07 000000430 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:44:51.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.294 -07 000000461 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:44:51.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.304 -07 000000444 INF: FPGA: Recv ZSGSRD 29877
17-03-18 02:44:51.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:51.314 -07 000000629 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:44:51.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:51.324 -07 000000561 INF: FPGA: Recv ZPIEZORD 25363
17-03-18 02:44:51.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:51.334 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.9 V.
17-03-18 02:44:51.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29876 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29876 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29871 (-131.4 uncal um), Max = 29880 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:44:51.334 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29876, posNoise = 4, negNoise = 5
17-03-18 02:44:51.334 -07 000000610 INF: Z Motor: After move to -0.132241, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:51.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:44:51.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:51.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:51.334 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:51.334 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:51.334 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:51.334 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:51.334 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:51.334 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:51.334 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:44:51.334 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:51.334 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:51.334 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:51.334 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:51.334 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:51.334 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:44:51.334 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:51.344 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:44:51.344 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:44:51.344 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:44:51.344 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:44:51.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29065 150\n [Camera]
17-03-18 02:44:51.514 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:51.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:51.554 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:51.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:51.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:51.954 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:51.954 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:51.954 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:44:51.954 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:51.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:51.954 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:51.954 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:51.954 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:44:52.144 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29065 783
17-03-18 02:44:52.294 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:52.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:44:52.334 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:44:52.334 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:52.344 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:52.344 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:44:52.344 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:44:52.344 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:52.344 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:52.344 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:44:52.344 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:44:52.414 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.977204,
17-03-18 02:44:52.484 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:44:52.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:44:52.484 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:44:52.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:44:52.484 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:52.484 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:52.484 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:44:52.484 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:52.484 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:52.484 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:44:52.674 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:52.674 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:52.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29065 150' command took 2 ms to send, 1316 ms to get response, and 1324 ms overall
17-03-18 02:44:52.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:44:52.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132253113958385. ------
17-03-18 02:44:52.684 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:52.684 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13867 mm
17-03-18 02:44:52.684 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:52.684 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:44:52.684 -07 000000444 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:44:52.684 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:52.684 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30292, sync = True, waitForSettling = False)
17-03-18 02:44:52.684 -07 000000461 INF: Z Motor: Moving to -0.138668 mm, started at -0.132253 mm, distance = -6.41 um
17-03-18 02:44:52.694 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:52.694 -07 000000461 INF: FPGA: Xmit ZDACW 30292\n [Z Motor]
17-03-18 02:44:52.694 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:44:52.704 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:52.704 -07 000000461 INF: FPGA: 'ZDACW 30292' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:44:52.824 -07 000000424 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:44:52.824 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 137 ms overall
17-03-18 02:44:52.824 -07 000000444 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:52.824 -07 000000444 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:52.824 -07 000000444 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:44:52.824 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:52.834 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:52.844 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:52.844 -07 000000590 INF: FPGA: Recv ZDACR 30292
17-03-18 02:44:52.854 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:44:52.854 -07 000000461 INF: Z Motor: MoveAbsStepped took 164 ms (did NOT wait for settling yet))
17-03-18 02:44:52.894 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 02:44:52.894 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:44:52.894 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:52.894 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:44:52.894 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:44:52.894 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:52.894 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:52.904 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:44:52.904 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:44:52.904 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:44:53.024 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:53.024 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 335 ms overall
17-03-18 02:44:53.204 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:44:53.204 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 02:44:53.254 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:53.254 -07 000000512 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:44:53.264 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:44:53.264 -07 000000444 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:53.264 -07 000000444 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:44:53.264 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.178 mm/sec
17-03-18 02:44:54.214 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:54.214 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:44:54.224 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:54.224 -07 000000444 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:54.264 -07 000000444 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:54.264 -07 000000444 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:54.264 -07 000000444 INF: Y Motor: Moved to 62.3955 after 1576 ms (table move)
17-03-18 02:44:54.264 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138668 mm (DAC = 30292)
17-03-18 02:44:54.264 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.264 -07 000000576 INF: FPGA: Recv ZSGSRD 30877
17-03-18 02:44:54.274 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:44:54.274 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.274 -07 000000590 INF: FPGA: Recv ZSGSRD 30870
17-03-18 02:44:54.284 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.284 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.284 -07 000000591 INF: FPGA: Recv ZSGSRD 30873
17-03-18 02:44:54.294 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.294 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.294 -07 000000569 INF: FPGA: Recv ZSGSRD 30869
17-03-18 02:44:54.304 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.304 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.304 -07 000000629 INF: FPGA: Recv ZSGSRD 30873
17-03-18 02:44:54.314 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.314 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.314 -07 000000462 INF: FPGA: Recv ZSGSRD 30873
17-03-18 02:44:54.324 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.324 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.324 -07 000000590 INF: FPGA: Recv ZSGSRD 30876
17-03-18 02:44:54.334 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.334 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.334 -07 000000424 INF: FPGA: Recv ZSGSRD 30874
17-03-18 02:44:54.344 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.344 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.344 -07 000000569 INF: FPGA: Recv ZSGSRD 30879
17-03-18 02:44:54.354 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.354 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:54.354 -07 000000501 INF: FPGA: Recv ZSGSRD 30881
17-03-18 02:44:54.364 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.364 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:54.364 -07 000000591 INF: FPGA: Recv ZPIEZORD 26682
17-03-18 02:44:54.374 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:54.374 -07 000000618 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.622 V. Piezo Error = -9.2 V.
17-03-18 02:44:54.374 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30874 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30874 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30869 (-137.8 uncal um), Max = 30881 (-137.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:44:54.374 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30874, posNoise = 7, negNoise = 5
17-03-18 02:44:54.374 -07 000000618 INF: Z Motor: After move to -0.138668, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:54.374 -07 000000618 INF: Z Motor: Settle wait time = 1578 ms, measure time = 106 ms (allowed 150 ms), total time = 1684 ms
17-03-18 02:44:54.374 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:54.424 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1737 ms
17-03-18 02:44:54.424 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:54.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:54.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:54.424 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:54.424 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:54.424 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:54.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:54.424 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:54.424 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:54.434 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:54.434 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:54.434 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:44:54.434 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:44:54.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:54.484 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:44:54.784 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:44:54.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:44:54.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:54.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:54.824 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:54.824 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:54.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:44:54.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:44:54.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:54.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:44:54.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:44:54.924 -07 000000629 INF: Autofocus start
17-03-18 02:44:54.924 -07 000000629 INF: MeasureProfile start
17-03-18 02:44:54.924 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:54.924 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:54.934 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:54.934 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:54.934 -07 000000629 INF: MeasureProfile done
17-03-18 02:44:54.934 -07 000000629 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:44:54.934 -07 000000629 INF: Autofocus finished
17-03-18 02:44:55.134 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:55.134 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 02:44:55.134 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138664477675863. ----------
17-03-18 02:44:55.134 -07 000000610 INF: Cycle	103	Tile	4	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:55.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28799, sync = True, waitForSettling = True)
17-03-18 02:44:55.144 -07 000000610 INF: Z Motor: Moving to -0.131833 mm, started at -0.138664 mm, distance = 6.83 um
17-03-18 02:44:55.144 -07 000000610 INF: FPGA: Xmit ZDACW 28799\n [Z Motor]
17-03-18 02:44:55.144 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:44:55.154 -07 000000610 INF: FPGA: 'ZDACW 28799' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:55.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:55.154 -07 000000579 INF: FPGA: Recv ZDACR 28799
17-03-18 02:44:55.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:55.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.314 -07 000000467 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:44:55.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.324 -07 000000501 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:44:55.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 10 ms overall
17-03-18 02:44:55.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.334 -07 000000424 INF: FPGA: Recv ZSGSRD 29805
17-03-18 02:44:55.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:55.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.344 -07 000000444 INF: FPGA: Recv ZSGSRD 29809
17-03-18 02:44:55.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.354 -07 000000579 INF: FPGA: Recv ZSGSRD 29810
17-03-18 02:44:55.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.364 -07 000000502 INF: FPGA: Recv ZSGSRD 29813
17-03-18 02:44:55.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.374 -07 000000501 INF: FPGA: Recv ZSGSRD 29810
17-03-18 02:44:55.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.384 -07 000000629 INF: FPGA: Recv ZSGSRD 29820
17-03-18 02:44:55.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.394 -07 000000424 INF: FPGA: Recv ZSGSRD 29814
17-03-18 02:44:55.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:55.404 -07 000000626 INF: FPGA: Recv ZSGSRD 29812
17-03-18 02:44:55.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:55.414 -07 000000430 INF: FPGA: Recv ZPIEZORD 25296
17-03-18 02:44:55.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:55.424 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.9 V.
17-03-18 02:44:55.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29812 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29812 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29805 (-131.0 uncal um), Max = 29820 (-131.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:44:55.424 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29812, posNoise = 8, negNoise = 7
17-03-18 02:44:55.424 -07 000000610 INF: Z Motor: After move to -0.131833, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:55.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:44:55.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:55.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:55.424 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:55.424 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:55.424 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:55.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:55.424 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:55.424 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:55.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:44:55.424 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:55.424 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:55.424 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:55.424 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:55.434 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:55.434 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:44:55.434 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:55.434 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:44:55.434 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:44:55.444 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:44:55.444 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:44:55.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28976 150\n [Camera]
17-03-18 02:44:55.644 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:44:56.044 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:44:56.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:44:56.044 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:56.044 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:44:56.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:44:56.044 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:56.044 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:56.044 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:44:56.054 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:56.054 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:44:56.234 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28976 785
17-03-18 02:44:56.384 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:44:56.434 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:44:56.434 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:44:56.434 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:56.444 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:56.444 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:44:56.444 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:44:56.444 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:44:56.444 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:56.444 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:44:56.454 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:44:56.504 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:44:56.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:44:56.574 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:44:56.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:44:56.574 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:44:56.584 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:44:56.584 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:44:56.584 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:44:56.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:44:56.584 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:44:56.584 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:44:56.584 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:44:56.764 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:44:56.764 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:44:56.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28976 150' command took 2 ms to send, 1318 ms to get response, and 1323 ms overall
17-03-18 02:44:56.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:44:56.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131841964381313. ------
17-03-18 02:44:56.894 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:56.894 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13853 mm
17-03-18 02:44:56.894 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:44:56.894 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:44:56.894 -07 000000629 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:44:56.894 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 30263, sync = True, waitForSettling = False)
17-03-18 02:44:56.894 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:56.894 -07 000000430 INF: Z Motor: Moving to -0.138535 mm, started at -0.131842 mm, distance = -6.69 um
17-03-18 02:44:56.904 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:56.904 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:56.904 -07 000000569 INF: FPGA: Recv YRDPOS 127787
17-03-18 02:44:56.914 -07 000000430 INF: FPGA: Xmit ZDACW 30263\n [Z Motor]
17-03-18 02:44:56.914 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:44:56.914 -07 000000629 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:56.914 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:44:56.914 -07 000000629 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:44:56.914 -07 000000629 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:44:56.924 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:44:56.924 -07 000000430 INF: FPGA: 'ZDACW 30263' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:44:56.934 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:44:56.944 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:56.944 -07 000000606 INF: FPGA: Recv ZDACR 30263
17-03-18 02:44:56.954 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:44:56.954 -07 000000430 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-18 02:44:56.964 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:44:56.964 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:44:56.964 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:56.974 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:44:56.974 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:44:56.974 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:56.974 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:56.974 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:44:56.974 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:44:56.984 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:44:57.124 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:44:57.124 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:44:57.304 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:44:57.304 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-18 02:44:57.354 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:57.354 -07 000000461 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:44:57.364 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:44:57.364 -07 000000629 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:57.364 -07 000000629 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:44:57.364 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.837 mm, average velocity = 2.114 mm/sec
17-03-18 02:44:57.774 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.99219,
17-03-18 02:44:58.314 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:44:58.314 -07 000000512 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:44:58.324 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.324 -07 000000629 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:44:58.344 -07 000000629 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:44:58.344 -07 000000629 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:44:58.344 -07 000000629 INF: Y Motor: Moved to 63.2241 after 1454 ms (table move)
17-03-18 02:44:58.354 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138535 mm (DAC = 30263)
17-03-18 02:44:58.354 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.354 -07 000000444 INF: FPGA: Recv ZSGSRD 30853
17-03-18 02:44:58.364 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:44:58.364 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.364 -07 000000561 INF: FPGA: Recv ZSGSRD 30858
17-03-18 02:44:58.374 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.374 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.374 -07 000000576 INF: FPGA: Recv ZSGSRD 30848
17-03-18 02:44:58.384 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.384 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.384 -07 000000461 INF: FPGA: Recv ZSGSRD 30855
17-03-18 02:44:58.394 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.394 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.394 -07 000000569 INF: FPGA: Recv ZSGSRD 30854
17-03-18 02:44:58.404 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.404 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.404 -07 000000590 INF: FPGA: Recv ZSGSRD 30850
17-03-18 02:44:58.414 -07 000000591 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.414 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.414 -07 000000430 INF: FPGA: Recv ZSGSRD 30853
17-03-18 02:44:58.424 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.424 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.424 -07 000000444 INF: FPGA: Recv ZSGSRD 30860
17-03-18 02:44:58.434 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.434 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.434 -07 000000462 INF: FPGA: Recv ZSGSRD 30851
17-03-18 02:44:58.444 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.444 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:58.444 -07 000000576 INF: FPGA: Recv ZSGSRD 30859
17-03-18 02:44:58.454 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.454 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:58.454 -07 000000512 INF: FPGA: Recv ZPIEZORD 26700
17-03-18 02:44:58.464 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:58.464 -07 000000591 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.1 V.
17-03-18 02:44:58.464 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30854 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30848 (-137.7 uncal um), Max = 30860 (-137.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:44:58.464 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30854, posNoise = 6, negNoise = 6
17-03-18 02:44:58.464 -07 000000591 INF: Z Motor: After move to -0.138535, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:58.464 -07 000000591 INF: Z Motor: Settle wait time = 1457 ms, measure time = 108 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:44:58.464 -07 000000591 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:44:58.514 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:44:58.514 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:44:58.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:58.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:58.514 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:58.514 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:58.514 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:44:58.514 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:58.514 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:44:58.514 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:44:58.524 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:44:58.524 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:44:58.524 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:44:58.524 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:44:58.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:44:58.574 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 02:44:58.874 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 02:44:58.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 02:44:58.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:44:58.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:44:58.914 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:44:58.914 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:44:58.914 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 376 ms to get response, and 385 ms overall
17-03-18 02:44:58.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:44:58.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:44:58.994 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:44:58.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:44:59.014 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:44:59.014 -07 000000569 INF: Autofocus start
17-03-18 02:44:59.014 -07 000000569 INF: MeasureProfile start
17-03-18 02:44:59.014 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:44:59.024 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:44:59.024 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:44:59.024 -07 000000569 INF: MeasureProfile done
17-03-18 02:44:59.024 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:44:59.024 -07 000000569 INF: Autofocus finished
17-03-18 02:44:59.224 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:44:59.224 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:44:59.224 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138535993433028. ----------
17-03-18 02:44:59.224 -07 000000610 INF: Cycle	103	Tile	5	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:44:59.234 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28770, sync = True, waitForSettling = True)
17-03-18 02:44:59.234 -07 000000610 INF: Z Motor: Moving to -0.131701 mm, started at -0.138536 mm, distance = 6.84 um
17-03-18 02:44:59.234 -07 000000610 INF: FPGA: Xmit ZDACW 28770\n [Z Motor]
17-03-18 02:44:59.234 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:44:59.244 -07 000000610 INF: FPGA: 'ZDACW 28770' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:44:59.244 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:44:59.244 -07 000000430 INF: FPGA: Recv ZDACR 28770
17-03-18 02:44:59.254 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.254 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:44:59.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.404 -07 000000569 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:44:59.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:44:59.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.414 -07 000000626 INF: FPGA: Recv ZSGSRD 29794
17-03-18 02:44:59.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.424 -07 000000561 INF: FPGA: Recv ZSGSRD 29789
17-03-18 02:44:59.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.434 -07 000000576 INF: FPGA: Recv ZSGSRD 29791
17-03-18 02:44:59.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.444 -07 000000501 INF: FPGA: Recv ZSGSRD 29794
17-03-18 02:44:59.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.454 -07 000000430 INF: FPGA: Recv ZSGSRD 29791
17-03-18 02:44:59.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.464 -07 000000591 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:44:59.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.474 -07 000000502 INF: FPGA: Recv ZSGSRD 29797
17-03-18 02:44:59.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.484 -07 000000590 INF: FPGA: Recv ZSGSRD 29795
17-03-18 02:44:59.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:44:59.494 -07 000000512 INF: FPGA: Recv ZSGSRD 29787
17-03-18 02:44:59.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.504 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:44:59.504 -07 000000618 INF: FPGA: Recv ZPIEZORD 25296
17-03-18 02:44:59.514 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:44:59.514 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.9 V.
17-03-18 02:44:59.514 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29792 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29791 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29787 (-130.9 uncal um), Max = 29797 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:44:59.514 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29792, posNoise = 5, negNoise = 5
17-03-18 02:44:59.514 -07 000000610 INF: Z Motor: After move to -0.131701, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:44:59.514 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:44:59.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:44:59.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:44:59.514 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:44:59.514 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:44:59.514 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:44:59.514 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:44:59.514 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:44:59.514 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:44:59.514 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:44:59.514 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:44:59.514 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:44:59.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:44:59.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:44:59.514 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:44:59.514 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:44:59.514 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:44:59.524 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:44:59.524 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:44:59.524 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:44:59.524 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:44:59.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28947 150\n [Camera]
17-03-18 02:44:59.734 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:00.134 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:00.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:00.134 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:00.134 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:00.134 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:00.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:00.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:00.134 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:00.134 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:00.134 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:45:00.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28947 783
17-03-18 02:45:00.474 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:00.534 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:45:00.534 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:45:00.534 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:00.534 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:00.534 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:45:00.534 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:45:00.534 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:45:00.534 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:00.544 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:00.544 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:45:00.664 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:00.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:00.664 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:00.664 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:00.664 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:45:00.664 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:00.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:00.664 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:00.664 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:00.664 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:45:00.854 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:00.854 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:00.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28947 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-18 02:45:00.864 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:00.864 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131713480138477. ------
17-03-18 02:45:00.864 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:00.864 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13821 mm
17-03-18 02:45:00.864 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:00.864 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:45:00.864 -07 000000606 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:45:00.864 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30192, sync = True, waitForSettling = False)
17-03-18 02:45:00.864 -07 000000501 INF: Z Motor: Moving to -0.138210 mm, started at -0.131713 mm, distance = -6.50 um
17-03-18 02:45:00.864 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:00.874 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:00.874 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:00.874 -07 000000424 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:45:00.884 -07 000000501 INF: FPGA: Xmit ZDACW 30192\n [Z Motor]
17-03-18 02:45:00.884 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:45:00.884 -07 000000606 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:00.884 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:45:00.884 -07 000000606 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:00.884 -07 000000606 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:45:00.894 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:00.894 -07 000000501 INF: FPGA: 'ZDACW 30192' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:45:00.904 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:00.914 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:00.914 -07 000000512 INF: FPGA: Recv ZDACR 30192
17-03-18 02:45:00.924 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:00.924 -07 000000501 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:45:01.064 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:45:01.064 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:45:01.064 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:01.064 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:45:01.064 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:45:01.064 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:01.074 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:01.074 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:45:01.074 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:45:01.074 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:45:01.094 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:01.094 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:01.274 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:45:01.274 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:45:01.324 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:01.324 -07 000000561 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:45:01.334 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:45:01.334 -07 000000606 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:01.334 -07 000000606 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 02:45:01.334 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.134 mm/sec
17-03-18 02:45:01.504 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:01.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:02.284 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:02.284 -07 000000462 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:45:02.294 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:02.294 -07 000000606 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:02.314 -07 000000606 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:02.314 -07 000000606 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:02.314 -07 000000606 INF: Y Motor: Moved to 64.0571 after 1448 ms (table move)
17-03-18 02:45:02.314 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138210 mm (DAC = 30192)
17-03-18 02:45:02.314 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.324 -07 000000502 INF: FPGA: Recv ZSGSRD 30807
17-03-18 02:45:02.334 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:02.334 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.334 -07 000000501 INF: FPGA: Recv ZSGSRD 30804
17-03-18 02:45:02.344 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.344 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.344 -07 000000606 INF: FPGA: Recv ZSGSRD 30811
17-03-18 02:45:02.354 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.354 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.354 -07 000000430 INF: FPGA: Recv ZSGSRD 30807
17-03-18 02:45:02.364 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.364 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.364 -07 000000618 INF: FPGA: Recv ZSGSRD 30803
17-03-18 02:45:02.374 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.374 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.374 -07 000000444 INF: FPGA: Recv ZSGSRD 30802
17-03-18 02:45:02.384 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.384 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.384 -07 000000424 INF: FPGA: Recv ZSGSRD 30805
17-03-18 02:45:02.394 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.394 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.394 -07 000000569 INF: FPGA: Recv ZSGSRD 30798
17-03-18 02:45:02.404 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.404 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.404 -07 000000512 INF: FPGA: Recv ZSGSRD 30802
17-03-18 02:45:02.414 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.414 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:02.414 -07 000000591 INF: FPGA: Recv ZSGSRD 30807
17-03-18 02:45:02.424 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.424 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:02.424 -07 000000444 INF: FPGA: Recv ZPIEZORD 26626
17-03-18 02:45:02.434 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:02.434 -07 000000579 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.607 V. Piezo Error = -9.2 V.
17-03-18 02:45:02.434 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30805 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30804 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30798 (-137.4 uncal um), Max = 30811 (-137.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:45:02.434 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30805, posNoise = 6, negNoise = 7
17-03-18 02:45:02.434 -07 000000579 INF: Z Motor: After move to -0.138210, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:02.434 -07 000000579 INF: Z Motor: Settle wait time = 1453 ms, measure time = 110 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:45:02.434 -07 000000579 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:02.474 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:45:02.474 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:02.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:02.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:02.474 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:02.474 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:02.474 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:02.474 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:02.474 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:02.474 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:02.484 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:02.484 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:02.484 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:45:02.484 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:45:02.494 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:02.534 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 02:45:02.834 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 341
17-03-18 02:45:02.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 341
17-03-18 02:45:02.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:02.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:45:02.874 -07 000000606 INF: FPGA: Recv @CAMSNAP 382
17-03-18 02:45:02.874 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:02.874 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 387 ms overall
17-03-18 02:45:02.954 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:45:02.954 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:02.954 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:45:02.954 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:45:02.974 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:02.974 -07 000000462 INF: Autofocus start
17-03-18 02:45:02.974 -07 000000462 INF: MeasureProfile start
17-03-18 02:45:02.974 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:02.984 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:02.984 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:02.984 -07 000000462 INF: MeasureProfile done
17-03-18 02:45:02.984 -07 000000462 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:45:02.984 -07 000000462 INF: Autofocus finished
17-03-18 02:45:03.134 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.989471,
17-03-18 02:45:03.184 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:03.184 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:03.184 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138221207038081. ----------
17-03-18 02:45:03.184 -07 000000610 INF: Cycle	103	Tile	6	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:03.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28687, sync = True, waitForSettling = True)
17-03-18 02:45:03.194 -07 000000610 INF: Z Motor: Moving to -0.131321 mm, started at -0.138221 mm, distance = 6.90 um
17-03-18 02:45:03.194 -07 000000610 INF: FPGA: Xmit ZDACW 28687\n [Z Motor]
17-03-18 02:45:03.194 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:45:03.204 -07 000000610 INF: FPGA: 'ZDACW 28687' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:03.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:03.204 -07 000000444 INF: FPGA: Recv ZDACR 28687
17-03-18 02:45:03.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:03.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.364 -07 000000461 INF: FPGA: Recv ZSGSRD 29732
17-03-18 02:45:03.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:03.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.374 -07 000000512 INF: FPGA: Recv ZSGSRD 29730
17-03-18 02:45:03.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.384 -07 000000561 INF: FPGA: Recv ZSGSRD 29731
17-03-18 02:45:03.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.394 -07 000000512 INF: FPGA: Recv ZSGSRD 29739
17-03-18 02:45:03.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.404 -07 000000467 INF: FPGA: Recv ZSGSRD 29726
17-03-18 02:45:03.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.414 -07 000000512 INF: FPGA: Recv ZSGSRD 29733
17-03-18 02:45:03.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29730
17-03-18 02:45:03.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.434 -07 000000502 INF: FPGA: Recv ZSGSRD 29734
17-03-18 02:45:03.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.444 -07 000000606 INF: FPGA: Recv ZSGSRD 29731
17-03-18 02:45:03.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:03.454 -07 000000579 INF: FPGA: Recv ZSGSRD 29727
17-03-18 02:45:03.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:03.464 -07 000000618 INF: FPGA: Recv ZPIEZORD 25233
17-03-18 02:45:03.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:03.474 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.9 V.
17-03-18 02:45:03.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29731 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29731 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29726 (-130.5 uncal um), Max = 29739 (-130.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:45:03.474 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29731, posNoise = 8, negNoise = 5
17-03-18 02:45:03.474 -07 000000610 INF: Z Motor: After move to -0.131321, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:03.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:45:03.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:03.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:03.474 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:03.474 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:03.474 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:03.474 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:03.474 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:03.474 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:03.474 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:03.474 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:03.474 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:03.474 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:03.484 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:45:03.484 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:03.484 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:03.484 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:03.494 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:45:03.494 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:45:03.494 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:45:03.494 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:45:03.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28864 150\n [Camera]
17-03-18 02:45:03.694 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:04.094 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:04.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:04.094 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:04.104 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:04.104 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:45:04.104 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:04.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:04.104 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:04.104 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:04.104 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:04.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28864 783
17-03-18 02:45:04.434 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:04.474 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:45:04.474 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:45:04.474 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:04.474 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:04.484 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:45:04.484 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:45:04.484 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:04.484 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:45:04.484 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:04.484 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:45:04.634 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:04.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:04.634 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:04.634 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:04.634 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:45:04.634 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:04.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:04.634 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:04.634 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:04.634 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:45:04.824 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:45:04.824 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:04.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28864 150' command took 2 ms to send, 1313 ms to get response, and 1324 ms overall
17-03-18 02:45:04.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:04.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.13132160319783. ------
17-03-18 02:45:04.824 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:04.824 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13788 mm
17-03-18 02:45:04.954 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:04.954 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:04.954 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-18 02:45:04.954 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:04.954 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:45:04.954 -07 000000626 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:45:04.954 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30120, sync = True, waitForSettling = False)
17-03-18 02:45:04.954 -07 000000501 INF: Z Motor: Moving to -0.137881 mm, started at -0.131322 mm, distance = -6.56 um
17-03-18 02:45:04.964 -07 000000501 INF: FPGA: Xmit ZDACW 30120\n [Z Motor]
17-03-18 02:45:04.964 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:45:04.974 -07 000000501 INF: FPGA: 'ZDACW 30120' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:45:04.974 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:04.974 -07 000000430 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:45:04.984 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:45:04.984 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:04.984 -07 000000626 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:04.984 -07 000000626 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:04.984 -07 000000626 INF: Y Motor: Moving 1337 steps-11
17-03-18 02:45:04.984 -07 000000569 INF: FPGA: Recv ZDACR 30120
17-03-18 02:45:04.994 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:45:04.994 -07 000000501 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 02:45:04.994 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:05.034 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:45:05.034 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:45:05.034 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:05.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:45:05.034 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:45:05.034 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:05.044 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:05.044 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:45:05.044 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:45:05.054 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:45:05.154 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:05.154 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:45:05.364 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:45:05.364 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:45:05.414 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:05.414 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:45:05.424 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:45:05.424 -07 000000626 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:05.424 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:45:05.424 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.835 mm, average velocity = 2.153 mm/sec
17-03-18 02:45:06.374 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:06.374 -07 000000629 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:45:06.384 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:06.384 -07 000000626 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:06.414 -07 000000626 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:06.414 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:06.414 -07 000000626 INF: Y Motor: Moved to 64.8789 after 1454 ms (table move)
17-03-18 02:45:06.414 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137881 mm (DAC = 30120)
17-03-18 02:45:06.414 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.414 -07 000000579 INF: FPGA: Recv ZSGSRD 30759
17-03-18 02:45:06.424 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:45:06.424 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.424 -07 000000561 INF: FPGA: Recv ZSGSRD 30754
17-03-18 02:45:06.434 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.434 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.434 -07 000000501 INF: FPGA: Recv ZSGSRD 30759
17-03-18 02:45:06.444 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.444 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.444 -07 000000591 INF: FPGA: Recv ZSGSRD 30753
17-03-18 02:45:06.454 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.454 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.454 -07 000000444 INF: FPGA: Recv ZSGSRD 30755
17-03-18 02:45:06.464 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.464 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.464 -07 000000576 INF: FPGA: Recv ZSGSRD 30754
17-03-18 02:45:06.474 -07 000000461 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.474 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.474 -07 000000512 INF: FPGA: Recv ZSGSRD 30750
17-03-18 02:45:06.484 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.484 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.484 -07 000000502 INF: FPGA: Recv ZSGSRD 30745
17-03-18 02:45:06.494 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.494 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.494 -07 000000606 INF: FPGA: Recv ZSGSRD 30748
17-03-18 02:45:06.504 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.504 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:06.504 -07 000000569 INF: FPGA: Recv ZSGSRD 30762
17-03-18 02:45:06.504 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:06.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:06.514 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.514 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:06.514 -07 000000618 INF: FPGA: Recv ZPIEZORD 26548
17-03-18 02:45:06.524 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:06.524 -07 000000461 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.596 V. Piezo Error = -9.2 V.
17-03-18 02:45:06.524 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30754 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30754 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30745 (-137.0 uncal um), Max = 30762 (-137.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:45:06.524 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30754, posNoise = 8, negNoise = 9
17-03-18 02:45:06.524 -07 000000461 INF: Z Motor: After move to -0.137881, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:06.524 -07 000000461 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:45:06.524 -07 000000461 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:06.574 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1741 ms
17-03-18 02:45:06.574 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:06.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:06.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:06.574 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:06.574 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:06.574 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:06.574 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:06.574 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:45:06.574 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:06.584 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:06.584 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:06.584 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:45:06.584 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:45:06.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:06.634 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 02:45:06.934 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 02:45:06.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 02:45:06.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:06.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:45:06.974 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:06.974 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:06.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 387 ms overall
17-03-18 02:45:07.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:45:07.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:07.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:45:07.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:45:07.074 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:07.074 -07 000000576 INF: Autofocus start
17-03-18 02:45:07.074 -07 000000576 INF: MeasureProfile start
17-03-18 02:45:07.084 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:07.084 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:07.084 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:07.094 -07 000000576 INF: MeasureProfile done
17-03-18 02:45:07.094 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:45:07.094 -07 000000576 INF: Autofocus finished
17-03-18 02:45:07.284 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:07.284 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:07.284 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137893572218851. ----------
17-03-18 02:45:07.284 -07 000000610 INF: Cycle	103	Tile	7	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:07.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28644, sync = True, waitForSettling = True)
17-03-18 02:45:07.294 -07 000000610 INF: Z Motor: Moving to -0.131124 mm, started at -0.137894 mm, distance = 6.77 um
17-03-18 02:45:07.294 -07 000000610 INF: FPGA: Xmit ZDACW 28644\n [Z Motor]
17-03-18 02:45:07.294 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:45:07.304 -07 000000610 INF: FPGA: 'ZDACW 28644' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:07.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:07.304 -07 000000462 INF: FPGA: Recv ZDACR 28644
17-03-18 02:45:07.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:07.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.464 -07 000000502 INF: FPGA: Recv ZSGSRD 29697
17-03-18 02:45:07.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:07.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.474 -07 000000576 INF: FPGA: Recv ZSGSRD 29703
17-03-18 02:45:07.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.484 -07 000000455 INF: FPGA: Recv ZSGSRD 29701
17-03-18 02:45:07.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.494 -07 000000591 INF: FPGA: Recv ZSGSRD 29696
17-03-18 02:45:07.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.504 -07 000000462 INF: FPGA: Recv ZSGSRD 29705
17-03-18 02:45:07.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.514 -07 000000502 INF: FPGA: Recv ZSGSRD 29706
17-03-18 02:45:07.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.524 -07 000000569 INF: FPGA: Recv ZSGSRD 29697
17-03-18 02:45:07.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.534 -07 000000444 INF: FPGA: Recv ZSGSRD 29701
17-03-18 02:45:07.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.544 -07 000000561 INF: FPGA: Recv ZSGSRD 29703
17-03-18 02:45:07.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:07.554 -07 000000461 INF: FPGA: Recv ZSGSRD 29702
17-03-18 02:45:07.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:07.564 -07 000000618 INF: FPGA: Recv ZPIEZORD 25205
17-03-18 02:45:07.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:07.574 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.9 V.
17-03-18 02:45:07.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29701 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29702 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29696 (-130.3 uncal um), Max = 29706 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:45:07.574 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29701, posNoise = 5, negNoise = 5
17-03-18 02:45:07.574 -07 000000610 INF: Z Motor: After move to -0.131124, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:07.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:45:07.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:07.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:07.574 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:07.574 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:07.574 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:07.574 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:07.574 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:07.574 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:07.574 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:07.574 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:07.574 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:07.574 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:07.584 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:45:07.584 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:07.584 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:07.584 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:07.594 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:45:07.594 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:45:07.594 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:45:07.594 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:45:07.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28820 150\n [Camera]
17-03-18 02:45:07.794 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:08.194 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:08.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:08.194 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:08.194 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:08.194 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:08.194 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:08.194 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:08.204 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:08.204 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:08.204 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:08.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28820 783
17-03-18 02:45:08.494 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.988112,
17-03-18 02:45:08.534 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:08.594 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:45:08.594 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:45:08.594 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:08.594 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:08.594 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:45:08.594 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:45:08.594 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:45:08.594 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:08.604 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:08.604 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:45:08.724 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:08.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:08.724 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:08.724 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:08.724 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:45:08.724 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:08.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:08.734 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:08.734 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:08.734 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:45:08.914 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:45:08.914 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:08.914 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28820 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:45:08.924 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:08.924 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131128876833577. ------
17-03-18 02:45:09.044 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13771 mm
17-03-18 02:45:09.044 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:09.044 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:09.044 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:09.044 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:45:09.044 -07 000000501 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:45:09.044 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 30082, sync = True, waitForSettling = False)
17-03-18 02:45:09.044 -07 000000455 INF: Z Motor: Moving to -0.137707 mm, started at -0.131129 mm, distance = -6.58 um
17-03-18 02:45:09.054 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:09.054 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:09.054 -07 000000444 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:45:09.064 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:45:09.064 -07 000000501 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:09.064 -07 000000455 INF: FPGA: Xmit ZDACW 30082\n [Z Motor]
17-03-18 02:45:09.064 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:45:09.064 -07 000000501 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:09.064 -07 000000501 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:45:09.074 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:09.074 -07 000000455 INF: FPGA: 'ZDACW 30082' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:45:09.084 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:09.094 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:09.094 -07 000000467 INF: FPGA: Recv ZDACR 30082
17-03-18 02:45:09.104 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:09.104 -07 000000455 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:45:09.124 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:45:09.124 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:45:09.124 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:09.124 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:45:09.124 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:45:09.124 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:09.124 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:09.134 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:09.134 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:45:09.134 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:45:09.274 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:09.274 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:09.454 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:45:09.454 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall
17-03-18 02:45:09.504 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:09.504 -07 000000424 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:45:09.514 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:09.514 -07 000000501 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:09.514 -07 000000501 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:45:09.514 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-18 02:45:10.464 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:10.464 -07 000000455 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:45:10.474 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:10.474 -07 000000501 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:10.504 -07 000000501 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:10.504 -07 000000501 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:10.504 -07 000000501 INF: Y Motor: Moved to 65.7144 after 1455 ms (table move)
17-03-18 02:45:10.504 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137707 mm (DAC = 30082)
17-03-18 02:45:10.504 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.504 -07 000000618 INF: FPGA: Recv ZSGSRD 30728
17-03-18 02:45:10.514 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:10.514 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.514 -07 000000512 INF: FPGA: Recv ZSGSRD 30727
17-03-18 02:45:10.524 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.524 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.524 -07 000000618 INF: FPGA: Recv ZSGSRD 30729
17-03-18 02:45:10.534 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.534 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.534 -07 000000569 INF: FPGA: Recv ZSGSRD 30730
17-03-18 02:45:10.544 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.544 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.544 -07 000000455 INF: FPGA: Recv ZSGSRD 30726
17-03-18 02:45:10.554 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.554 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.554 -07 000000579 INF: FPGA: Recv ZSGSRD 30726
17-03-18 02:45:10.564 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.564 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.564 -07 000000461 INF: FPGA: Recv ZSGSRD 30724
17-03-18 02:45:10.574 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.574 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.574 -07 000000561 INF: FPGA: Recv ZSGSRD 30722
17-03-18 02:45:10.584 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.584 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.584 -07 000000424 INF: FPGA: Recv ZSGSRD 30726
17-03-18 02:45:10.594 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.594 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:10.594 -07 000000512 INF: FPGA: Recv ZSGSRD 30727
17-03-18 02:45:10.604 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.604 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:10.604 -07 000000502 INF: FPGA: Recv ZPIEZORD 26568
17-03-18 02:45:10.614 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:10.614 -07 000000591 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -9.1 V.
17-03-18 02:45:10.614 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30726 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30726 (-136.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30722 (-136.9 uncal um), Max = 30730 (-136.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:45:10.614 -07 000000591 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30726, posNoise = 4, negNoise = 4
17-03-18 02:45:10.614 -07 000000591 INF: Z Motor: After move to -0.137707, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:10.614 -07 000000591 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:45:10.614 -07 000000591 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:10.664 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:45:10.664 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:10.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:10.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:10.664 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:10.664 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:10.664 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:10.664 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:10.664 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:45:10.664 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:10.674 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:10.674 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:10.674 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:45:10.684 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:45:10.684 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:10.724 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:11.024 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:11.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:11.024 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:11.024 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:45:11.064 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:11.064 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:11.064 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:45:11.144 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:45:11.144 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:11.144 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:45:11.144 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:45:11.164 -07 000000579 INF: Autofocus start
17-03-18 02:45:11.164 -07 000000579 INF: MeasureProfile start
17-03-18 02:45:11.164 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:11.164 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:11.174 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:11.174 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:11.174 -07 000000579 INF: MeasureProfile done
17-03-18 02:45:11.174 -07 000000579 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:45:11.174 -07 000000579 INF: Autofocus finished
17-03-18 02:45:11.374 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:11.374 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:11.374 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137713694278882. ----------
17-03-18 02:45:11.374 -07 000000610 INF: Cycle	103	Tile	8	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:11.384 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28606, sync = True, waitForSettling = True)
17-03-18 02:45:11.384 -07 000000610 INF: Z Motor: Moving to -0.130950 mm, started at -0.137714 mm, distance = 6.76 um
17-03-18 02:45:11.384 -07 000000610 INF: FPGA: Xmit ZDACW 28606\n [Z Motor]
17-03-18 02:45:11.384 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:45:11.394 -07 000000610 INF: FPGA: 'ZDACW 28606' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:11.394 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:11.394 -07 000000467 INF: FPGA: Recv ZDACR 28606
17-03-18 02:45:11.404 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.404 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:11.504 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:11.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:11.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.554 -07 000000590 INF: FPGA: Recv ZSGSRD 29678
17-03-18 02:45:11.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:11.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.564 -07 000000501 INF: FPGA: Recv ZSGSRD 29677
17-03-18 02:45:11.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.574 -07 000000576 INF: FPGA: Recv ZSGSRD 29674
17-03-18 02:45:11.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.584 -07 000000467 INF: FPGA: Recv ZSGSRD 29671
17-03-18 02:45:11.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.594 -07 000000462 INF: FPGA: Recv ZSGSRD 29679
17-03-18 02:45:11.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.604 -07 000000590 INF: FPGA: Recv ZSGSRD 29674
17-03-18 02:45:11.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.614 -07 000000501 INF: FPGA: Recv ZSGSRD 29670
17-03-18 02:45:11.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.624 -07 000000576 INF: FPGA: Recv ZSGSRD 29677
17-03-18 02:45:11.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.634 -07 000000467 INF: FPGA: Recv ZSGSRD 29679
17-03-18 02:45:11.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:11.644 -07 000000561 INF: FPGA: Recv ZSGSRD 29681
17-03-18 02:45:11.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:45:11.654 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:11.654 -07 000000455 INF: FPGA: Recv ZPIEZORD 25147
17-03-18 02:45:11.664 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:11.664 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -9.9 V.
17-03-18 02:45:11.664 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29676 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29677 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29670 (-130.1 uncal um), Max = 29681 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:45:11.664 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29676, posNoise = 5, negNoise = 6
17-03-18 02:45:11.664 -07 000000610 INF: Z Motor: After move to -0.130950, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:11.664 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:45:11.664 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:11.664 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:11.664 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:11.664 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:11.664 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:11.664 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:11.664 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:11.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:11.664 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:11.664 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:11.664 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:11.664 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:11.664 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:11.664 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:11.674 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:45:11.674 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:11.674 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:45:11.674 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:45:11.674 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:45:11.674 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:45:11.684 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28783 150\n [Camera]
17-03-18 02:45:11.884 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:12.284 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:45:12.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:45:12.284 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:12.284 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:45:12.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:45:12.284 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:12.284 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:12.284 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:45:12.284 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:12.284 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:12.474 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28783 783
17-03-18 02:45:12.624 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:12.674 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:45:12.674 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:45:12.674 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:12.674 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:45:12.674 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:45:12.674 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:12.674 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:12.674 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:45:12.674 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:12.684 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:45:12.814 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:12.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:12.814 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:12.814 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:12.814 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:45:12.814 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:12.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:12.814 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:12.814 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:12.814 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:45:13.004 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:13.004 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:13.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28783 150' command took 2 ms to send, 1317 ms to get response, and 1324 ms overall
17-03-18 02:45:13.004 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:13.004 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130968271530033. ------
17-03-18 02:45:13.014 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:13.014 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13731 mm
17-03-18 02:45:13.014 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:13.014 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29995, sync = True, waitForSettling = False)
17-03-18 02:45:13.014 -07 000000444 INF: Z Motor: Moving to -0.137308 mm, started at -0.130968 mm, distance = -6.34 um
17-03-18 02:45:13.014 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:13.014 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:45:13.014 -07 000000461 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:45:13.024 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:13.024 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:13.024 -07 000000590 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:45:13.034 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:45:13.034 -07 000000461 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:13.034 -07 000000461 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:13.034 -07 000000461 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:45:13.034 -07 000000444 INF: FPGA: Xmit ZDACW 29995\n [Z Motor]
17-03-18 02:45:13.034 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:45:13.044 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:13.044 -07 000000444 INF: FPGA: 'ZDACW 29995' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:45:13.054 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:13.064 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:13.064 -07 000000606 INF: FPGA: Recv ZDACR 29995
17-03-18 02:45:13.074 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:13.074 -07 000000444 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:45:13.214 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:45:13.214 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:45:13.224 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:13.224 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:45:13.224 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:45:13.224 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:13.224 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:13.224 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:45:13.224 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:45:13.234 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:45:13.244 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:13.244 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:13.424 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:45:13.424 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:45:13.474 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:13.474 -07 000000590 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:45:13.484 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:13.484 -07 000000461 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:13.484 -07 000000461 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:45:13.484 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 02:45:13.854 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.000345,
17-03-18 02:45:14.434 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:14.434 -07 000000561 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:45:14.444 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.444 -07 000000461 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:14.474 -07 000000461 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:14.474 -07 000000461 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:14.474 -07 000000461 INF: Y Motor: Moved to 66.5391 after 1453 ms (table move)
17-03-18 02:45:14.474 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137308 mm (DAC = 29995)
17-03-18 02:45:14.474 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.484 -07 000000591 INF: FPGA: Recv ZSGSRD 30661
17-03-18 02:45:14.484 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 02:45:14.484 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.484 -07 000000576 INF: FPGA: Recv ZSGSRD 30663
17-03-18 02:45:14.494 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:45:14.494 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.494 -07 000000618 INF: FPGA: Recv ZSGSRD 30672
17-03-18 02:45:14.504 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.504 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.504 -07 000000512 INF: FPGA: Recv ZSGSRD 30669
17-03-18 02:45:14.514 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.514 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.514 -07 000000461 INF: FPGA: Recv ZSGSRD 30670
17-03-18 02:45:14.524 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.524 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.524 -07 000000455 INF: FPGA: Recv ZSGSRD 30658
17-03-18 02:45:14.534 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.534 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.534 -07 000000502 INF: FPGA: Recv ZSGSRD 30661
17-03-18 02:45:14.544 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.544 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.544 -07 000000626 INF: FPGA: Recv ZSGSRD 30660
17-03-18 02:45:14.554 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.554 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.554 -07 000000444 INF: FPGA: Recv ZSGSRD 30657
17-03-18 02:45:14.564 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.564 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:14.564 -07 000000461 INF: FPGA: Recv ZSGSRD 30668
17-03-18 02:45:14.574 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.574 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:14.574 -07 000000629 INF: FPGA: Recv ZPIEZORD 26505
17-03-18 02:45:14.584 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:14.584 -07 000000430 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.1 V.
17-03-18 02:45:14.584 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30664 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30662 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30657 (-136.5 uncal um), Max = 30672 (-136.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:45:14.584 -07 000000430 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30664, posNoise = 8, negNoise = 7
17-03-18 02:45:14.584 -07 000000430 INF: Z Motor: After move to -0.137308, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:14.584 -07 000000430 INF: Z Motor: Settle wait time = 1457 ms, measure time = 105 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:45:14.584 -07 000000430 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:14.634 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:45:14.634 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:14.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:14.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:14.634 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:14.634 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:14.634 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:14.634 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:14.634 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:45:14.634 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:14.644 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:14.644 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:14.644 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:45:14.644 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:45:14.654 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:14.694 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:14.994 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:14.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:14.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:14.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:45:15.034 -07 000000561 INF: FPGA: Recv @CAMSNAP 383
17-03-18 02:45:15.044 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:15.044 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 02:45:15.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:45:15.114 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:15.114 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:45:15.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:45:15.144 -07 000000467 INF: Autofocus start
17-03-18 02:45:15.144 -07 000000467 INF: MeasureProfile start
17-03-18 02:45:15.144 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:15.144 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:15.154 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:15.154 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:15.154 -07 000000467 INF: MeasureProfile done
17-03-18 02:45:15.154 -07 000000467 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:45:15.154 -07 000000467 INF: Autofocus finished
17-03-18 02:45:15.354 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:15.354 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:15.354 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137315393126093. ----------
17-03-18 02:45:15.364 -07 000000610 INF: Cycle	103	Tile	9	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:15.364 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28519, sync = True, waitForSettling = True)
17-03-18 02:45:15.364 -07 000000610 INF: Z Motor: Moving to -0.130552 mm, started at -0.137315 mm, distance = 6.76 um
17-03-18 02:45:15.364 -07 000000610 INF: FPGA: Xmit ZDACW 28519\n [Z Motor]
17-03-18 02:45:15.364 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:45:15.374 -07 000000610 INF: FPGA: 'ZDACW 28519' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:15.374 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:15.374 -07 000000561 INF: FPGA: Recv ZDACR 28519
17-03-18 02:45:15.384 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.384 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:15.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.534 -07 000000569 INF: FPGA: Recv ZSGSRD 29610
17-03-18 02:45:15.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:15.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.544 -07 000000467 INF: FPGA: Recv ZSGSRD 29608
17-03-18 02:45:15.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.554 -07 000000629 INF: FPGA: Recv ZSGSRD 29612
17-03-18 02:45:15.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.564 -07 000000462 INF: FPGA: Recv ZSGSRD 29615
17-03-18 02:45:15.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.574 -07 000000591 INF: FPGA: Recv ZSGSRD 29608
17-03-18 02:45:15.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.584 -07 000000512 INF: FPGA: Recv ZSGSRD 29617
17-03-18 02:45:15.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.594 -07 000000576 INF: FPGA: Recv ZSGSRD 29616
17-03-18 02:45:15.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.604 -07 000000502 INF: FPGA: Recv ZSGSRD 29614
17-03-18 02:45:15.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.614 -07 000000579 INF: FPGA: Recv ZSGSRD 29609
17-03-18 02:45:15.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:15.624 -07 000000461 INF: FPGA: Recv ZSGSRD 29615
17-03-18 02:45:15.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:15.634 -07 000000606 INF: FPGA: Recv ZPIEZORD 25141
17-03-18 02:45:15.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:15.644 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.8 V.
17-03-18 02:45:15.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29612 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29613 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29608 (-129.8 uncal um), Max = 29617 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:45:15.644 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29612, posNoise = 5, negNoise = 4
17-03-18 02:45:15.644 -07 000000610 INF: Z Motor: After move to -0.130552, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:15.644 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:45:15.644 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:15.644 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:15.644 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:15.644 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:15.644 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:15.644 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:15.644 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:15.644 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:15.644 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:15.644 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:15.644 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:15.644 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:15.654 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:15.654 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:15.654 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:45:15.654 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:15.654 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:45:15.654 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:45:15.664 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:45:15.664 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:45:15.664 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28696 150\n [Camera]
17-03-18 02:45:15.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:16.264 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:16.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:16.264 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:16.264 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:16.264 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:45:16.264 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:16.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:16.264 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:16.264 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:16.264 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:16.454 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28696 783
17-03-18 02:45:16.504 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:16.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:16.604 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:16.664 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:45:16.664 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:45:16.664 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:16.664 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:45:16.664 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:45:16.664 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:16.664 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:16.664 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:45:16.674 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:16.674 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:45:16.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:16.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:16.794 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:16.794 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:16.794 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:45:16.794 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:16.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:16.794 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:16.794 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:16.794 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:45:16.984 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:17.114 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:17.114 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28696 150' command took 2 ms to send, 1441 ms to get response, and 1447 ms overall
17-03-18 02:45:17.114 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:17.114 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.13055712195296. ------
17-03-18 02:45:17.114 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:17.114 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13742 mm
17-03-18 02:45:17.114 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:17.124 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:45:17.124 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30020, sync = True, waitForSettling = False)
17-03-18 02:45:17.124 -07 000000569 INF: Z Motor: Moving to -0.137423 mm, started at -0.130557 mm, distance = -6.87 um
17-03-18 02:45:17.124 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:45:17.124 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:17.124 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:45:17.124 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:17.124 -07 000000455 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:45:17.134 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:17.134 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:17.134 -07 000000576 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:17.134 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:17.134 -07 000000576 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:45:17.144 -07 000000569 INF: FPGA: Xmit ZDACW 30020\n [Z Motor]
17-03-18 02:45:17.144 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:45:17.154 -07 000000569 INF: FPGA: 'ZDACW 30020' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:17.154 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:17.164 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:17.164 -07 000000618 INF: FPGA: Recv ZDACR 30020
17-03-18 02:45:17.174 -07 000000569 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:45:17.174 -07 000000569 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:45:17.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:45:17.194 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:45:17.194 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:17.194 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:45:17.194 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:45:17.194 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:17.194 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:17.194 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:45:17.194 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:45:17.204 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:45:17.334 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:17.334 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 02:45:17.524 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:45:17.524 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:45:17.574 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:17.574 -07 000000461 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:45:17.584 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:17.584 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:17.584 -07 000000576 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 02:45:17.584 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.119 mm/sec
17-03-18 02:45:18.534 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:18.534 -07 000000606 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:45:18.544 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:18.544 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:18.564 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:18.564 -07 000000576 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:18.564 -07 000000576 INF: Y Motor: Moved to 67.3721 after 1448 ms (table move)
17-03-18 02:45:18.574 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137423 mm (DAC = 30020)
17-03-18 02:45:18.574 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.574 -07 000000462 INF: FPGA: Recv ZSGSRD 30688
17-03-18 02:45:18.584 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:18.584 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.584 -07 000000626 INF: FPGA: Recv ZSGSRD 30687
17-03-18 02:45:18.594 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:18.594 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.594 -07 000000590 INF: FPGA: Recv ZSGSRD 30689
17-03-18 02:45:18.604 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:18.604 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.604 -07 000000629 INF: FPGA: Recv ZSGSRD 30679
17-03-18 02:45:18.614 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:18.614 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.614 -07 000000455 INF: FPGA: Recv ZSGSRD 30687
17-03-18 02:45:18.624 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:18.624 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.624 -07 000000618 INF: FPGA: Recv ZSGSRD 30683
17-03-18 02:45:18.634 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:18.654 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.654 -07 000000576 INF: FPGA: Recv ZSGSRD 30674
17-03-18 02:45:18.664 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:18.684 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.684 -07 000000591 INF: FPGA: Recv ZSGSRD 30684
17-03-18 02:45:18.694 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:18.704 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.704 -07 000000618 INF: FPGA: Recv ZSGSRD 30681
17-03-18 02:45:18.714 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:45:18.714 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:18.714 -07 000000626 INF: FPGA: Recv ZSGSRD 30683
17-03-18 02:45:18.724 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:18.724 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:18.724 -07 000000430 INF: FPGA: Recv ZPIEZORD 26508
17-03-18 02:45:18.734 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:18.734 -07 000000579 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -9.2 V.
17-03-18 02:45:18.734 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30684 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30684 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30674 (-136.6 uncal um), Max = 30689 (-136.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:45:18.734 -07 000000579 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30684, posNoise = 5, negNoise = 10
17-03-18 02:45:18.734 -07 000000579 INF: Z Motor: After move to -0.137423, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:18.734 -07 000000579 INF: Z Motor: Settle wait time = 1452 ms, measure time = 158 ms (allowed 150 ms), total time = 1610 ms
17-03-18 02:45:18.734 -07 000000579 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-18 02:45:18.734 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:45:18.734 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:18.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:18.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:18.744 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:18.744 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:18.744 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:18.744 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:18.744 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:18.744 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:18.754 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:18.754 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:18.754 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:45:18.754 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:45:18.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:18.804 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:19.104 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:19.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:19.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:19.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:45:19.144 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:19.144 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:19.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:45:19.214 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.996267,
17-03-18 02:45:19.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:45:19.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:19.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:45:19.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:45:19.244 -07 000000569 INF: Autofocus start
17-03-18 02:45:19.244 -07 000000569 INF: MeasureProfile start
17-03-18 02:45:19.254 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:19.254 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:19.254 -07 000000569 INF: MeasureProfile done
17-03-18 02:45:19.254 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:45:19.254 -07 000000569 INF: Autofocus finished
17-03-18 02:45:19.264 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:45:19.264 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:19.464 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:19.464 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:19.464 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137443877368928. ----------
17-03-18 02:45:19.464 -07 000000610 INF: Cycle	103	Tile	10	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:19.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28515, sync = True, waitForSettling = True)
17-03-18 02:45:19.474 -07 000000610 INF: Z Motor: Moving to -0.130533 mm, started at -0.137444 mm, distance = 6.91 um
17-03-18 02:45:19.474 -07 000000610 INF: FPGA: Xmit ZDACW 28515\n [Z Motor]
17-03-18 02:45:19.474 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:45:19.484 -07 000000610 INF: FPGA: 'ZDACW 28515' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:19.484 -07 000000502 INF: FPGA: Recv ZDACR 28515
17-03-18 02:45:19.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:19.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.644 -07 000000626 INF: FPGA: Recv ZSGSRD 29611
17-03-18 02:45:19.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.654 -07 000000576 INF: FPGA: Recv ZSGSRD 29612
17-03-18 02:45:19.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.664 -07 000000590 INF: FPGA: Recv ZSGSRD 29612
17-03-18 02:45:19.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.674 -07 000000576 INF: FPGA: Recv ZSGSRD 29604
17-03-18 02:45:19.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.684 -07 000000590 INF: FPGA: Recv ZSGSRD 29616
17-03-18 02:45:19.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.694 -07 000000626 INF: FPGA: Recv ZSGSRD 29611
17-03-18 02:45:19.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.704 -07 000000461 INF: FPGA: Recv ZSGSRD 29613
17-03-18 02:45:19.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.714 -07 000000462 INF: FPGA: Recv ZSGSRD 29611
17-03-18 02:45:19.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.724 -07 000000444 INF: FPGA: Recv ZSGSRD 29607
17-03-18 02:45:19.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:19.734 -07 000000590 INF: FPGA: Recv ZSGSRD 29615
17-03-18 02:45:19.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:19.744 -07 000000626 INF: FPGA: Recv ZPIEZORD 25122
17-03-18 02:45:19.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:19.754 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.8 V.
17-03-18 02:45:19.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29611 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29612 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29604 (-129.7 uncal um), Max = 29616 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:45:19.754 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29611, posNoise = 5, negNoise = 7
17-03-18 02:45:19.754 -07 000000610 INF: Z Motor: After move to -0.130533, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:19.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:45:19.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:19.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:19.754 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:19.754 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:19.754 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:19.754 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:19.754 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:19.754 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:19.754 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:19.754 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:19.754 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:45:19.754 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:19.764 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:45:19.764 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:19.764 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:19.764 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:19.774 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:45:19.774 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:45:19.774 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:45:19.774 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:45:19.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28691 150\n [Camera]
17-03-18 02:45:19.974 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:20.374 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:20.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:20.374 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:20.374 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:20.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:20.374 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:20.384 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:20.384 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:20.384 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:20.384 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:20.564 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28691 783
17-03-18 02:45:20.714 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:20.774 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:45:20.774 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:45:20.774 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:20.774 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:45:20.774 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:45:20.774 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:20.774 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:20.774 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:45:20.774 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:20.784 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:45:20.904 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:20.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:20.914 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:20.914 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:20.914 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:20.914 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:45:20.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:20.914 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:20.914 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:20.914 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:45:21.104 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:45:21.104 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:21.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28691 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-18 02:45:21.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:21.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130550697740819. ------
17-03-18 02:45:21.104 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:21.104 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13689 mm
17-03-18 02:45:21.104 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:21.104 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:21.114 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:21.114 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:21.114 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:45:21.114 -07 000000579 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:45:21.114 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29904, sync = True, waitForSettling = False)
17-03-18 02:45:21.114 -07 000000629 INF: Z Motor: Moving to -0.136892 mm, started at -0.130551 mm, distance = -6.34 um
17-03-18 02:45:21.124 -07 000000629 INF: FPGA: Xmit ZDACW 29904\n [Z Motor]
17-03-18 02:45:21.124 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:45:21.134 -07 000000629 INF: FPGA: 'ZDACW 29904' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:45:21.134 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:21.134 -07 000000606 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:45:21.144 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:21.144 -07 000000579 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:21.144 -07 000000579 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:21.144 -07 000000579 INF: Y Motor: Moving 1345 steps-22
17-03-18 02:45:21.254 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:21.264 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:21.264 -07 000000590 INF: FPGA: Recv ZDACR 29904
17-03-18 02:45:21.264 -07 000000629 INF: FPGA: 'ZDACR' command took 119 ms to send, 1 ms to get response, and 131 ms overall
17-03-18 02:45:21.264 -07 000000629 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-18 02:45:21.314 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:21.314 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:21.314 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:45:21.314 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:45:21.314 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:21.314 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:45:21.314 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:45:21.314 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:21.314 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:21.314 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:45:21.324 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:21.324 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:45:21.504 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:21.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:21.644 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:45:21.644 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 381 ms overall
17-03-18 02:45:21.684 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:21.684 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:45:21.694 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:45:21.694 -07 000000579 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:21.694 -07 000000579 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:45:21.694 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 500 ms, distance = 0.841 mm, average velocity = 1.681 mm/sec
17-03-18 02:45:22.644 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:22.644 -07 000000444 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:45:22.654 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:22.654 -07 000000579 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:22.674 -07 000000579 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:22.674 -07 000000579 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:45:22.674 -07 000000579 INF: Y Motor: Moved to 68.2056 after 1566 ms (table move)
17-03-18 02:45:22.684 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136892 mm (DAC = 29904)
17-03-18 02:45:22.684 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.684 -07 000000424 INF: FPGA: Recv ZSGSRD 30597
17-03-18 02:45:22.694 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.694 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.694 -07 000000591 INF: FPGA: Recv ZSGSRD 30603
17-03-18 02:45:22.704 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.704 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.704 -07 000000462 INF: FPGA: Recv ZSGSRD 30603
17-03-18 02:45:22.714 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.714 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.714 -07 000000618 INF: FPGA: Recv ZSGSRD 30595
17-03-18 02:45:22.724 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.724 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.724 -07 000000626 INF: FPGA: Recv ZSGSRD 30593
17-03-18 02:45:22.734 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.734 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.734 -07 000000569 INF: FPGA: Recv ZSGSRD 30593
17-03-18 02:45:22.744 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.744 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.744 -07 000000629 INF: FPGA: Recv ZSGSRD 30601
17-03-18 02:45:22.754 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.754 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.754 -07 000000462 INF: FPGA: Recv ZSGSRD 30601
17-03-18 02:45:22.764 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.764 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.764 -07 000000576 INF: FPGA: Recv ZSGSRD 30596
17-03-18 02:45:22.774 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.774 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:22.774 -07 000000591 INF: FPGA: Recv ZSGSRD 30605
17-03-18 02:45:22.784 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.784 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:22.784 -07 000000461 INF: FPGA: Recv ZPIEZORD 26418
17-03-18 02:45:22.794 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:22.794 -07 000000501 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.2 V.
17-03-18 02:45:22.794 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30599 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30599 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30593 (-136.1 uncal um), Max = 30605 (-136.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:45:22.794 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30599, posNoise = 6, negNoise = 6
17-03-18 02:45:22.794 -07 000000501 INF: Z Motor: After move to -0.136892, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:22.794 -07 000000501 INF: Z Motor: Settle wait time = 1569 ms, measure time = 110 ms (allowed 150 ms), total time = 1679 ms
17-03-18 02:45:22.794 -07 000000501 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:22.834 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms
17-03-18 02:45:22.834 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:22.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:22.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:22.834 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:22.834 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:22.834 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:22.834 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:22.834 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:22.844 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:22.844 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:22.844 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:22.854 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 02:45:22.854 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:45:22.854 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:22.894 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:23.194 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:23.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:23.194 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:23.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:45:23.234 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:23.244 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:23.244 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 02:45:23.314 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:45:23.314 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:23.314 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:45:23.314 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:45:23.344 -07 000000590 INF: Autofocus start
17-03-18 02:45:23.344 -07 000000590 INF: MeasureProfile start
17-03-18 02:45:23.344 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:23.344 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:23.354 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:23.354 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:23.354 -07 000000590 INF: MeasureProfile done
17-03-18 02:45:23.354 -07 000000590 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:45:23.354 -07 000000590 INF: Autofocus finished
17-03-18 02:45:23.554 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:23.554 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:23.564 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136897819336879. ----------
17-03-18 02:45:23.564 -07 000000610 INF: Cycle	103	Tile	11	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:23.564 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28399, sync = True, waitForSettling = True)
17-03-18 02:45:23.564 -07 000000610 INF: Z Motor: Moving to -0.130002 mm, started at -0.136898 mm, distance = 6.90 um
17-03-18 02:45:23.564 -07 000000610 INF: FPGA: Xmit ZDACW 28399\n [Z Motor]
17-03-18 02:45:23.574 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:45:23.574 -07 000000610 INF: FPGA: 'ZDACW 28399' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:45:23.574 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:23.574 -07 000000502 INF: FPGA: Recv ZDACR 28399
17-03-18 02:45:23.584 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:23.584 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:23.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.734 -07 000000569 INF: FPGA: Recv ZSGSRD 29526
17-03-18 02:45:23.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:23.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.744 -07 000000618 INF: FPGA: Recv ZSGSRD 29528
17-03-18 02:45:23.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:23.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.754 -07 000000590 INF: FPGA: Recv ZSGSRD 29530
17-03-18 02:45:23.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:23.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.764 -07 000000591 INF: FPGA: Recv ZSGSRD 29522
17-03-18 02:45:23.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:23.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.774 -07 000000430 INF: FPGA: Recv ZSGSRD 29528
17-03-18 02:45:23.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:23.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.784 -07 000000455 INF: FPGA: Recv ZSGSRD 29531
17-03-18 02:45:23.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:23.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.794 -07 000000512 INF: FPGA: Recv ZSGSRD 29529
17-03-18 02:45:23.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:23.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.804 -07 000000502 INF: FPGA: Recv ZSGSRD 29526
17-03-18 02:45:23.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:23.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.814 -07 000000455 INF: FPGA: Recv ZSGSRD 29529
17-03-18 02:45:23.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:45:23.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:23.824 -07 000000591 INF: FPGA: Recv ZSGSRD 29526
17-03-18 02:45:23.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:23.834 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:23.834 -07 000000606 INF: FPGA: Recv ZPIEZORD 25048
17-03-18 02:45:23.844 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:23.844 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -9.8 V.
17-03-18 02:45:23.844 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29528 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29528 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29522 (-129.2 uncal um), Max = 29531 (-129.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:45:23.844 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29528, posNoise = 3, negNoise = 6
17-03-18 02:45:23.844 -07 000000610 INF: Z Motor: After move to -0.130002, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:23.844 -07 000000610 INF: Z Motor: MoveAbsStepped took 271 ms)
17-03-18 02:45:23.844 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:23.844 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:23.844 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:23.844 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:23.844 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:23.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:23.844 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:23.844 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:23.844 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:23.844 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:23.844 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:23.844 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:23.844 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:23.844 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:23.844 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:45:23.844 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:23.854 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:45:23.854 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:45:23.854 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:45:23.854 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:45:23.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28576 150\n [Camera]
17-03-18 02:45:24.064 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:24.464 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:24.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:24.464 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:24.464 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:24.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:24.464 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:24.464 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:24.464 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:45:24.464 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:24.464 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:24.574 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.98264,
17-03-18 02:45:24.654 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28576 783
17-03-18 02:45:24.804 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:24.864 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:45:24.864 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:45:24.864 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:24.864 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:24.864 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:45:24.864 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:45:24.864 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:45:24.864 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:24.864 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:24.874 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:45:24.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:24.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:24.994 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:24.994 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:24.994 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:45:24.994 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:24.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:24.994 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:24.994 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:24.994 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:45:25.184 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:25.184 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:25.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28576 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-18 02:45:25.194 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:25.194 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130017488133053. ------
17-03-18 02:45:25.194 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:25.194 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13671 mm
17-03-18 02:45:25.194 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:25.194 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:45:25.194 -07 000000591 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 02:45:25.194 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:25.194 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29863, sync = True, waitForSettling = False)
17-03-18 02:45:25.194 -07 000000561 INF: Z Motor: Moving to -0.136704 mm, started at -0.130017 mm, distance = -6.69 um
17-03-18 02:45:25.204 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:25.204 -07 000000561 INF: FPGA: Xmit ZDACW 29863\n [Z Motor]
17-03-18 02:45:25.204 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:45:25.214 -07 000000561 INF: FPGA: 'ZDACW 29863' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:45:25.214 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:25.214 -07 000000629 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:45:25.224 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:25.224 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:45:25.224 -07 000000591 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:25.224 -07 000000591 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:25.224 -07 000000591 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:45:25.234 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:25.234 -07 000000430 INF: FPGA: Recv ZDACR 29863
17-03-18 02:45:25.244 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:25.244 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:25.244 -07 000000561 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:45:25.394 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-18 02:45:25.394 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:45:25.394 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:25.394 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:45:25.394 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:45:25.404 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:25.404 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:25.404 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:45:25.404 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:45:25.414 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:45:25.424 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:25.424 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:25.614 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:45:25.614 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:45:25.664 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:25.664 -07 000000467 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:45:25.674 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:25.674 -07 000000591 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:25.674 -07 000000591 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:45:25.674 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.108 mm/sec
17-03-18 02:45:26.504 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:26.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:26.624 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:26.624 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:45:26.634 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:26.634 -07 000000591 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:26.654 -07 000000591 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:26.654 -07 000000591 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:26.664 -07 000000591 INF: Y Motor: Moved to 69.0273 after 1464 ms (table move)
17-03-18 02:45:26.664 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136704 mm (DAC = 29863)
17-03-18 02:45:26.664 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.664 -07 000000569 INF: FPGA: Recv ZSGSRD 30572
17-03-18 02:45:26.674 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:45:26.674 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.674 -07 000000424 INF: FPGA: Recv ZSGSRD 30568
17-03-18 02:45:26.684 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.684 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.684 -07 000000618 INF: FPGA: Recv ZSGSRD 30567
17-03-18 02:45:26.694 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.694 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.694 -07 000000561 INF: FPGA: Recv ZSGSRD 30569
17-03-18 02:45:26.704 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.704 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.704 -07 000000512 INF: FPGA: Recv ZSGSRD 30569
17-03-18 02:45:26.714 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.714 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.714 -07 000000444 INF: FPGA: Recv ZSGSRD 30567
17-03-18 02:45:26.724 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.724 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.724 -07 000000569 INF: FPGA: Recv ZSGSRD 30565
17-03-18 02:45:26.734 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.734 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.734 -07 000000591 INF: FPGA: Recv ZSGSRD 30569
17-03-18 02:45:26.744 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.744 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.744 -07 000000629 INF: FPGA: Recv ZSGSRD 30567
17-03-18 02:45:26.754 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.754 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:26.754 -07 000000512 INF: FPGA: Recv ZSGSRD 30568
17-03-18 02:45:26.764 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.764 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:26.764 -07 000000430 INF: FPGA: Recv ZPIEZORD 26432
17-03-18 02:45:26.774 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:26.774 -07 000000576 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -9.1 V.
17-03-18 02:45:26.774 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30568 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30568 (-135.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30565 (-135.9 uncal um), Max = 30572 (-135.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:45:26.774 -07 000000576 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30568, posNoise = 4, negNoise = 3
17-03-18 02:45:26.774 -07 000000576 INF: Z Motor: After move to -0.136704, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:26.774 -07 000000576 INF: Z Motor: Settle wait time = 1466 ms, measure time = 106 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:45:26.774 -07 000000576 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:26.824 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 02:45:26.824 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:26.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:26.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:26.824 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:26.824 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:26.824 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:26.824 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:26.824 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:45:26.824 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:26.834 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:26.834 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:26.834 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:45:26.834 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:45:26.844 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:26.884 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:27.184 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:27.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:27.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:27.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:45:27.224 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:27.224 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:27.224 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:45:27.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:45:27.304 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:27.304 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:45:27.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 02:45:27.324 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:27.324 -07 000000579 INF: Autofocus start
17-03-18 02:45:27.324 -07 000000579 INF: MeasureProfile start
17-03-18 02:45:27.324 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:27.334 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:27.334 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:27.334 -07 000000579 INF: MeasureProfile done
17-03-18 02:45:27.334 -07 000000579 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:45:27.334 -07 000000579 INF: Autofocus finished
17-03-18 02:45:27.534 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:27.534 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:27.544 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136698668760484. ----------
17-03-18 02:45:27.544 -07 000000610 INF: Cycle	103	Tile	12	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:27.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28388, sync = True, waitForSettling = True)
17-03-18 02:45:27.544 -07 000000610 INF: Z Motor: Moving to -0.129952 mm, started at -0.136699 mm, distance = 6.75 um
17-03-18 02:45:27.544 -07 000000610 INF: FPGA: Xmit ZDACW 28388\n [Z Motor]
17-03-18 02:45:27.544 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:45:27.554 -07 000000610 INF: FPGA: 'ZDACW 28388' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:45:27.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:27.554 -07 000000424 INF: FPGA: Recv ZDACR 28388
17-03-18 02:45:27.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:27.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.714 -07 000000512 INF: FPGA: Recv ZSGSRD 29525
17-03-18 02:45:27.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:27.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.724 -07 000000462 INF: FPGA: Recv ZSGSRD 29525
17-03-18 02:45:27.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.734 -07 000000618 INF: FPGA: Recv ZSGSRD 29511
17-03-18 02:45:27.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.744 -07 000000606 INF: FPGA: Recv ZSGSRD 29519
17-03-18 02:45:27.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:27.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.754 -07 000000579 INF: FPGA: Recv ZSGSRD 29516
17-03-18 02:45:27.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.764 -07 000000501 INF: FPGA: Recv ZSGSRD 29517
17-03-18 02:45:27.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.774 -07 000000591 INF: FPGA: Recv ZSGSRD 29515
17-03-18 02:45:27.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.784 -07 000000512 INF: FPGA: Recv ZSGSRD 29519
17-03-18 02:45:27.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.794 -07 000000462 INF: FPGA: Recv ZSGSRD 29522
17-03-18 02:45:27.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:27.804 -07 000000618 INF: FPGA: Recv ZSGSRD 29518
17-03-18 02:45:27.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:27.814 -07 000000606 INF: FPGA: Recv ZPIEZORD 25013
17-03-18 02:45:27.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:27.824 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.9 V.
17-03-18 02:45:27.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29519 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29518 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29511 (-129.1 uncal um), Max = 29525 (-129.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:45:27.824 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29519, posNoise = 6, negNoise = 8
17-03-18 02:45:27.824 -07 000000610 INF: Z Motor: After move to -0.129952, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:27.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:45:27.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:27.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:27.824 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:27.824 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:27.824 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:27.824 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:27.824 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:27.824 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:27.824 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:45:27.824 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:27.824 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:27.824 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:27.834 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:45:27.834 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:27.834 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:45:27.834 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:27.844 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:45:27.844 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:45:27.844 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:45:27.844 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:45:27.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28564 150\n [Camera]
17-03-18 02:45:28.044 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:28.444 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:28.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:28.614 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:28.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:28.614 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:28.614 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:28.614 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:45:28.614 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:28.614 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:28.614 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:28.634 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28564 783
17-03-18 02:45:28.784 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:28.984 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:28.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:28.984 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:28.984 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:28.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:28.984 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:28.994 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:45:28.994 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:45:29.004 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:29.004 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:29.004 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 389 ms.
17-03-18 02:45:29.004 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:45:29.004 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:29.004 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:29.004 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:45:29.004 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:29.014 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:45:29.014 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:45:29.014 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:29.014 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:45:29.174 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:29.174 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:29.174 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28564 150' command took 4 ms to send, 1312 ms to get response, and 1324 ms overall
17-03-18 02:45:29.174 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:29.174 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129959670223777. ------
17-03-18 02:45:29.304 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:29.304 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13634 mm
17-03-18 02:45:29.304 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:29.304 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:29.304 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:45:29.304 -07 000000579 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:45:29.304 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29784, sync = True, waitForSettling = False)
17-03-18 02:45:29.304 -07 000000629 INF: Z Motor: Moving to -0.136342 mm, started at -0.129960 mm, distance = -6.38 um
17-03-18 02:45:29.314 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:29.314 -07 000000629 INF: FPGA: Xmit ZDACW 29784\n [Z Motor]
17-03-18 02:45:29.314 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:45:29.324 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:29.324 -07 000000629 INF: FPGA: 'ZDACW 29784' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:45:29.324 -07 000000467 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:45:29.334 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:29.334 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:45:29.334 -07 000000579 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:29.334 -07 000000579 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:29.334 -07 000000579 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:45:29.344 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:29.344 -07 000000576 INF: FPGA: Recv ZDACR 29784
17-03-18 02:45:29.354 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:29.354 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:29.354 -07 000000629 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:45:29.414 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 02:45:29.414 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 406 ms.
17-03-18 02:45:29.414 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:45:29.414 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:29.414 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:45:29.414 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:29.424 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:29.424 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:45:29.424 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 445 ms.
17-03-18 02:45:29.434 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 443 ms.
17-03-18 02:45:29.534 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:29.534 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:29.724 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:45:29.724 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:45:29.774 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:29.774 -07 000000455 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:45:29.784 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:29.784 -07 000000579 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:29.784 -07 000000579 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:45:29.784 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-18 02:45:29.934 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.02213,
17-03-18 02:45:30.734 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:30.734 -07 000000626 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:45:30.744 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:30.744 -07 000000579 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:30.764 -07 000000579 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:30.764 -07 000000579 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:30.764 -07 000000579 INF: Y Motor: Moved to 69.8633 after 1462 ms (table move)
17-03-18 02:45:30.774 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136342 mm (DAC = 29784)
17-03-18 02:45:30.774 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.774 -07 000000618 INF: FPGA: Recv ZSGSRD 30514
17-03-18 02:45:30.784 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:45:30.784 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.784 -07 000000461 INF: FPGA: Recv ZSGSRD 30507
17-03-18 02:45:30.794 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.794 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.794 -07 000000430 INF: FPGA: Recv ZSGSRD 30511
17-03-18 02:45:30.804 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.804 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.804 -07 000000502 INF: FPGA: Recv ZSGSRD 30515
17-03-18 02:45:30.814 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.814 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.814 -07 000000561 INF: FPGA: Recv ZSGSRD 30515
17-03-18 02:45:30.824 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.824 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.824 -07 000000455 INF: FPGA: Recv ZSGSRD 30512
17-03-18 02:45:30.834 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.834 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.834 -07 000000462 INF: FPGA: Recv ZSGSRD 30509
17-03-18 02:45:30.844 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.844 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.844 -07 000000590 INF: FPGA: Recv ZSGSRD 30512
17-03-18 02:45:30.854 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.854 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.854 -07 000000618 INF: FPGA: Recv ZSGSRD 30516
17-03-18 02:45:30.864 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.864 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:30.864 -07 000000576 INF: FPGA: Recv ZSGSRD 30516
17-03-18 02:45:30.874 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.874 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:30.874 -07 000000444 INF: FPGA: Recv ZPIEZORD 26299
17-03-18 02:45:30.884 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:30.884 -07 000000606 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.545 V. Piezo Error = -9.3 V.
17-03-18 02:45:30.884 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30513 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30513 (-135.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30507 (-135.5 uncal um), Max = 30516 (-135.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:45:30.884 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30513, posNoise = 3, negNoise = 6
17-03-18 02:45:30.884 -07 000000606 INF: Z Motor: After move to -0.136342, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:30.884 -07 000000606 INF: Z Motor: Settle wait time = 1465 ms, measure time = 109 ms (allowed 150 ms), total time = 1574 ms
17-03-18 02:45:30.884 -07 000000606 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:30.934 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:45:30.934 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:30.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:30.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:30.934 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:30.934 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:30.934 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:30.934 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:30.934 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:30.934 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:30.944 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:30.944 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:30.954 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:45:30.954 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:45:30.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:31.004 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:31.304 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:31.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:31.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:31.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:45:31.344 -07 000000467 INF: FPGA: Recv @CAMSNAP 383
17-03-18 02:45:31.344 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:31.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 385 ms to get response, and 388 ms overall
17-03-18 02:45:31.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 02:45:31.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:31.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:45:31.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-18 02:45:31.444 -07 000000579 INF: Autofocus start
17-03-18 02:45:31.444 -07 000000579 INF: MeasureProfile start
17-03-18 02:45:31.444 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:31.444 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:31.454 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:31.454 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:31.454 -07 000000579 INF: MeasureProfile done
17-03-18 02:45:31.454 -07 000000579 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:45:31.454 -07 000000579 INF: Autofocus finished
17-03-18 02:45:31.504 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:31.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:31.654 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:31.654 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:31.654 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136345337092687. ----------
17-03-18 02:45:31.654 -07 000000610 INF: Cycle	103	Tile	13	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:31.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28279, sync = True, waitForSettling = True)
17-03-18 02:45:31.664 -07 000000610 INF: Z Motor: Moving to -0.129453 mm, started at -0.136345 mm, distance = 6.89 um
17-03-18 02:45:31.664 -07 000000610 INF: FPGA: Xmit ZDACW 28279\n [Z Motor]
17-03-18 02:45:31.664 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:45:31.674 -07 000000610 INF: FPGA: 'ZDACW 28279' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:31.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:31.674 -07 000000618 INF: FPGA: Recv ZDACR 28279
17-03-18 02:45:31.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:31.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.834 -07 000000591 INF: FPGA: Recv ZSGSRD 29439
17-03-18 02:45:31.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:31.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.844 -07 000000590 INF: FPGA: Recv ZSGSRD 29440
17-03-18 02:45:31.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.854 -07 000000626 INF: FPGA: Recv ZSGSRD 29440
17-03-18 02:45:31.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.864 -07 000000579 INF: FPGA: Recv ZSGSRD 29434
17-03-18 02:45:31.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.874 -07 000000618 INF: FPGA: Recv ZSGSRD 29444
17-03-18 02:45:31.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.884 -07 000000462 INF: FPGA: Recv ZSGSRD 29440
17-03-18 02:45:31.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.894 -07 000000455 INF: FPGA: Recv ZSGSRD 29439
17-03-18 02:45:31.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.904 -07 000000502 INF: FPGA: Recv ZSGSRD 29443
17-03-18 02:45:31.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.914 -07 000000424 INF: FPGA: Recv ZSGSRD 29442
17-03-18 02:45:31.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:31.924 -07 000000501 INF: FPGA: Recv ZSGSRD 29437
17-03-18 02:45:31.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:31.934 -07 000000591 INF: FPGA: Recv ZPIEZORD 24907
17-03-18 02:45:31.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:31.944 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -9.9 V.
17-03-18 02:45:31.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29440 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29440 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29434 (-128.6 uncal um), Max = 29444 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:45:31.944 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29440, posNoise = 4, negNoise = 6
17-03-18 02:45:31.944 -07 000000610 INF: Z Motor: After move to -0.129453, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:31.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:45:31.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:31.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:31.944 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:31.944 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:31.944 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:31.944 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:31.944 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:31.944 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:31.944 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:31.944 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:31.944 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:31.944 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:31.954 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:31.954 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:31.954 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:45:31.954 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:31.964 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:45:31.964 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:45:31.964 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:45:31.964 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:45:31.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28456 150\n [Camera]
17-03-18 02:45:32.164 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:32.564 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:32.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:32.564 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:32.564 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:32.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:32.564 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:32.574 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:32.574 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:32.574 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:32.574 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:32.754 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28456 783
17-03-18 02:45:32.904 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:32.944 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:45:32.944 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:45:32.944 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:32.954 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:32.954 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:45:32.954 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:45:32.954 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:45:32.954 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:32.954 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:32.964 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:45:33.094 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:33.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:33.104 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:33.104 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:33.104 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:45:33.104 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:33.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:33.104 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:33.104 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:33.104 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:45:33.294 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:33.294 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:33.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28456 150' command took 2 ms to send, 1311 ms to get response, and 1324 ms overall
17-03-18 02:45:33.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:33.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129452157464578. ------
17-03-18 02:45:33.424 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13549 mm
17-03-18 02:45:33.424 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:33.424 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:33.434 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:45:33.434 -07 000000591 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:45:33.434 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29598, sync = True, waitForSettling = False)
17-03-18 02:45:33.434 -07 000000606 INF: Z Motor: Moving to -0.135491 mm, started at -0.129452 mm, distance = -6.04 um
17-03-18 02:45:33.434 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:33.444 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:45:33.444 -07 000000606 INF: FPGA: Xmit ZDACW 29598\n [Z Motor]
17-03-18 02:45:33.444 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:45:33.454 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:33.454 -07 000000606 INF: FPGA: 'ZDACW 29598' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:45:33.454 -07 000000576 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:45:33.464 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:33.464 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:45:33.464 -07 000000591 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:33.464 -07 000000591 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:33.464 -07 000000591 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:45:33.474 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:33.474 -07 000000576 INF: FPGA: Recv ZDACR 29598
17-03-18 02:45:33.484 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:33.484 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:33.484 -07 000000606 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:45:33.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:45:33.494 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:45:33.494 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:33.494 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:45:33.494 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:45:33.494 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:33.494 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:33.494 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:33.494 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:45:33.504 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:45:33.664 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:33.664 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:33.864 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:45:33.864 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 396 ms overall
17-03-18 02:45:33.904 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:33.904 -07 000000467 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:45:33.914 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:33.914 -07 000000591 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:33.914 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:45:33.914 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 02:45:34.864 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:34.864 -07 000000455 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:45:34.874 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:34.874 -07 000000591 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:34.904 -07 000000591 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:34.904 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:34.904 -07 000000591 INF: Y Motor: Moved to 70.6885 after 1468 ms (table move)
17-03-18 02:45:34.904 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135491 mm (DAC = 29598)
17-03-18 02:45:34.904 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:34.904 -07 000000576 INF: FPGA: Recv ZSGSRD 30383
17-03-18 02:45:34.914 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:34.914 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:34.914 -07 000000618 INF: FPGA: Recv ZSGSRD 30376
17-03-18 02:45:34.924 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:34.924 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:34.924 -07 000000455 INF: FPGA: Recv ZSGSRD 30374
17-03-18 02:45:34.934 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:34.934 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:34.934 -07 000000424 INF: FPGA: Recv ZSGSRD 30379
17-03-18 02:45:34.944 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:34.944 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:34.944 -07 000000590 INF: FPGA: Recv ZSGSRD 30382
17-03-18 02:45:34.954 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:34.954 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:34.954 -07 000000501 INF: FPGA: Recv ZSGSRD 30386
17-03-18 02:45:34.964 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:34.964 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:34.964 -07 000000462 INF: FPGA: Recv ZSGSRD 30381
17-03-18 02:45:34.974 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:34.984 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:34.984 -07 000000512 INF: FPGA: Recv ZSGSRD 30375
17-03-18 02:45:34.994 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:45:34.994 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:34.994 -07 000000502 INF: FPGA: Recv ZSGSRD 30374
17-03-18 02:45:35.004 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:35.004 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:35.004 -07 000000561 INF: FPGA: Recv ZSGSRD 30382
17-03-18 02:45:35.014 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:35.014 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:35.014 -07 000000467 INF: FPGA: Recv ZPIEZORD 26197
17-03-18 02:45:35.024 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:35.024 -07 000000569 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.2 V.
17-03-18 02:45:35.024 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30379 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30380 (-134.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30374 (-134.7 uncal um), Max = 30386 (-134.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:45:35.024 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30379, posNoise = 7, negNoise = 5
17-03-18 02:45:35.024 -07 000000569 INF: Z Motor: After move to -0.135491, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:35.024 -07 000000569 INF: Z Motor: Settle wait time = 1472 ms, measure time = 115 ms (allowed 150 ms), total time = 1587 ms
17-03-18 02:45:35.024 -07 000000569 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:35.064 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1631 ms
17-03-18 02:45:35.064 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:35.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:35.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:35.064 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:35.064 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:35.064 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:35.064 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:35.064 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:35.064 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:35.074 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:35.074 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:35.074 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:45:35.074 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:45:35.084 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:35.124 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:35.294 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 3.999021,
17-03-18 02:45:35.424 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:35.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:35.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:35.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:45:35.464 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:35.464 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:35.464 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 02:45:35.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:45:35.544 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:35.544 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:45:35.544 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:45:35.564 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:35.564 -07 000000606 INF: Autofocus start
17-03-18 02:45:35.564 -07 000000606 INF: MeasureProfile start
17-03-18 02:45:35.564 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:35.574 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:45:35.574 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:35.584 -07 000000606 INF: MeasureProfile done
17-03-18 02:45:35.584 -07 000000606 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:45:35.584 -07 000000606 INF: Autofocus finished
17-03-18 02:45:35.774 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:35.774 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:35.774 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135484492665691. ----------
17-03-18 02:45:35.784 -07 000000610 INF: Cycle	103	Tile	14	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:35.784 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28106, sync = True, waitForSettling = True)
17-03-18 02:45:35.784 -07 000000610 INF: Z Motor: Moving to -0.128661 mm, started at -0.135484 mm, distance = 6.82 um
17-03-18 02:45:35.784 -07 000000610 INF: FPGA: Xmit ZDACW 28106\n [Z Motor]
17-03-18 02:45:35.784 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:45:35.794 -07 000000610 INF: FPGA: 'ZDACW 28106' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:35.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:35.794 -07 000000579 INF: FPGA: Recv ZDACR 28106
17-03-18 02:45:35.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:35.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:35.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:35.954 -07 000000569 INF: FPGA: Recv ZSGSRD 29315
17-03-18 02:45:35.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:35.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:35.964 -07 000000606 INF: FPGA: Recv ZSGSRD 29318
17-03-18 02:45:35.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:35.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:35.974 -07 000000424 INF: FPGA: Recv ZSGSRD 29314
17-03-18 02:45:35.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:35.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:35.984 -07 000000502 INF: FPGA: Recv ZSGSRD 29315
17-03-18 02:45:35.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:35.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:35.994 -07 000000430 INF: FPGA: Recv ZSGSRD 29320
17-03-18 02:45:36.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:36.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:36.004 -07 000000461 INF: FPGA: Recv ZSGSRD 29321
17-03-18 02:45:36.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:36.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:36.014 -07 000000591 INF: FPGA: Recv ZSGSRD 29319
17-03-18 02:45:36.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:36.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:36.024 -07 000000424 INF: FPGA: Recv ZSGSRD 29318
17-03-18 02:45:36.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:36.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:36.034 -07 000000512 INF: FPGA: Recv ZSGSRD 29317
17-03-18 02:45:36.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:36.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:36.044 -07 000000430 INF: FPGA: Recv ZSGSRD 29315
17-03-18 02:45:36.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:36.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:36.054 -07 000000569 INF: FPGA: Recv ZPIEZORD 24820
17-03-18 02:45:36.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:36.064 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.9 V.
17-03-18 02:45:36.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29317 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29314 (-127.9 uncal um), Max = 29321 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:45:36.064 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29317, posNoise = 4, negNoise = 3
17-03-18 02:45:36.064 -07 000000610 INF: Z Motor: After move to -0.128661, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:36.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:45:36.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:36.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:36.064 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:36.064 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:36.064 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:36.064 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:36.064 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:36.064 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:36.064 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:36.064 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:36.064 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:36.064 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:36.074 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:36.074 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:36.074 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:45:36.074 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:36.084 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:45:36.084 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:45:36.084 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:45:36.084 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:45:36.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28283 150\n [Camera]
17-03-18 02:45:36.284 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:36.504 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:36.504 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:36.684 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:45:36.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:45:36.684 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:36.694 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:45:36.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:45:36.694 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:36.694 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:36.694 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:45:36.694 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:36.694 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:36.884 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28283 783
17-03-18 02:45:37.024 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:37.084 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:45:37.084 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:45:37.084 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:37.084 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:45:37.084 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:45:37.084 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:37.084 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:37.084 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:45:37.094 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:37.094 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:45:37.224 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:37.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:37.224 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:37.224 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:37.224 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:45:37.224 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:37.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:37.224 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:37.224 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:37.224 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:45:37.414 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:37.414 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:37.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28283 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-18 02:45:37.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:37.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128661979371141. ------
17-03-18 02:45:37.414 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:37.424 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13534 mm
17-03-18 02:45:37.424 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:37.424 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:37.424 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29565, sync = True, waitForSettling = False)
17-03-18 02:45:37.424 -07 000000512 INF: Z Motor: Moving to -0.135340 mm, started at -0.128662 mm, distance = -6.68 um
17-03-18 02:45:37.424 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:45:37.424 -07 000000502 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:45:37.434 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:37.434 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:37.434 -07 000000462 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:45:37.444 -07 000000512 INF: FPGA: Xmit ZDACW 29565\n [Z Motor]
17-03-18 02:45:37.444 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:45:37.444 -07 000000502 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:37.444 -07 000000502 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:37.444 -07 000000502 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:45:37.444 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:45:37.454 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:37.454 -07 000000512 INF: FPGA: 'ZDACW 29565' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:45:37.464 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:37.474 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:37.474 -07 000000579 INF: FPGA: Recv ZDACR 29565
17-03-18 02:45:37.484 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:37.484 -07 000000512 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-18 02:45:37.624 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:45:37.624 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:45:37.624 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:37.624 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:45:37.624 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:45:37.624 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:37.624 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:37.624 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:45:37.624 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:45:37.634 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:45:37.654 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:37.654 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:37.834 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:45:37.834 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:45:37.884 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:37.884 -07 000000461 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:45:37.894 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:37.894 -07 000000502 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:37.894 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:45:37.894 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 02:45:38.844 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:38.844 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:45:38.854 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:38.854 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:38.874 -07 000000502 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:38.874 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:45:38.874 -07 000000502 INF: Y Motor: Moved to 71.5190 after 1454 ms (table move)
17-03-18 02:45:38.884 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135340 mm (DAC = 29565)
17-03-18 02:45:38.884 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.884 -07 000000501 INF: FPGA: Recv ZSGSRD 30358
17-03-18 02:45:38.894 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:38.894 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.894 -07 000000462 INF: FPGA: Recv ZSGSRD 30350
17-03-18 02:45:38.904 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.904 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.904 -07 000000467 INF: FPGA: Recv ZSGSRD 30369
17-03-18 02:45:38.914 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.914 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.914 -07 000000444 INF: FPGA: Recv ZSGSRD 30359
17-03-18 02:45:38.924 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.924 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.924 -07 000000461 INF: FPGA: Recv ZSGSRD 30359
17-03-18 02:45:38.934 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.934 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.934 -07 000000501 INF: FPGA: Recv ZSGSRD 30361
17-03-18 02:45:38.944 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.944 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.944 -07 000000626 INF: FPGA: Recv ZSGSRD 30361
17-03-18 02:45:38.954 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.954 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.954 -07 000000512 INF: FPGA: Recv ZSGSRD 30357
17-03-18 02:45:38.964 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.964 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.964 -07 000000561 INF: FPGA: Recv ZSGSRD 30356
17-03-18 02:45:38.974 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.974 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:38.974 -07 000000618 INF: FPGA: Recv ZSGSRD 30353
17-03-18 02:45:38.984 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.984 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:38.984 -07 000000502 INF: FPGA: Recv ZPIEZORD 26212
17-03-18 02:45:38.994 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:38.994 -07 000000590 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -9.1 V.
17-03-18 02:45:38.994 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30358 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30358 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30350 (-134.5 uncal um), Max = 30369 (-134.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:45:38.994 -07 000000590 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30358, posNoise = 11, negNoise = 8
17-03-18 02:45:38.994 -07 000000590 INF: Z Motor: After move to -0.135340, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:38.994 -07 000000590 INF: Z Motor: Settle wait time = 1459 ms, measure time = 108 ms (allowed 150 ms), total time = 1567 ms
17-03-18 02:45:38.994 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:39.044 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:45:39.044 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:39.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:39.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:39.044 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:39.044 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:39.044 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:39.044 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:39.044 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:39.054 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:39.054 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:39.054 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:39.064 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:45:39.064 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:45:39.064 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:39.114 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:39.404 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:39.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:39.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:39.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:45:39.444 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:39.454 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:39.454 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:45:39.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 121 ms.
17-03-18 02:45:39.534 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:39.534 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:45:39.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 02:45:39.554 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:39.554 -07 000000424 INF: Autofocus start
17-03-18 02:45:39.554 -07 000000424 INF: MeasureProfile start
17-03-18 02:45:39.554 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:39.564 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:39.564 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:39.564 -07 000000424 INF: MeasureProfile done
17-03-18 02:45:39.564 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:45:39.564 -07 000000424 INF: Autofocus finished
17-03-18 02:45:39.764 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:39.764 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:39.764 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135349584210714. ----------
17-03-18 02:45:39.764 -07 000000610 INF: Cycle	103	Tile	15	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:39.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28073, sync = True, waitForSettling = True)
17-03-18 02:45:39.774 -07 000000610 INF: Z Motor: Moving to -0.128510 mm, started at -0.135350 mm, distance = 6.84 um
17-03-18 02:45:39.774 -07 000000610 INF: FPGA: Xmit ZDACW 28073\n [Z Motor]
17-03-18 02:45:39.774 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:45:39.784 -07 000000610 INF: FPGA: 'ZDACW 28073' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:45:39.794 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:39.794 -07 000000576 INF: FPGA: Recv ZDACR 28073
17-03-18 02:45:39.804 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:45:39.804 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:39.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:39.954 -07 000000569 INF: FPGA: Recv ZSGSRD 29298
17-03-18 02:45:39.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:39.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:39.964 -07 000000501 INF: FPGA: Recv ZSGSRD 29294
17-03-18 02:45:39.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:39.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:39.974 -07 000000561 INF: FPGA: Recv ZSGSRD 29294
17-03-18 02:45:39.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:39.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:39.984 -07 000000501 INF: FPGA: Recv ZSGSRD 29296
17-03-18 02:45:39.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:39.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:39.994 -07 000000590 INF: FPGA: Recv ZSGSRD 29295
17-03-18 02:45:40.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:40.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:40.004 -07 000000430 INF: FPGA: Recv ZSGSRD 29291
17-03-18 02:45:40.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:40.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:40.014 -07 000000502 INF: FPGA: Recv ZSGSRD 29295
17-03-18 02:45:40.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:40.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:40.024 -07 000000424 INF: FPGA: Recv ZSGSRD 29295
17-03-18 02:45:40.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:40.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:40.034 -07 000000618 INF: FPGA: Recv ZSGSRD 29294
17-03-18 02:45:40.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:40.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:40.044 -07 000000444 INF: FPGA: Recv ZSGSRD 29292
17-03-18 02:45:40.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:40.054 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:40.054 -07 000000569 INF: FPGA: Recv ZPIEZORD 24783
17-03-18 02:45:40.064 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:40.064 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.9 V.
17-03-18 02:45:40.064 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29294 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29294 (-127.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29291 (-127.7 uncal um), Max = 29298 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:45:40.064 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29294, posNoise = 4, negNoise = 3
17-03-18 02:45:40.064 -07 000000610 INF: Z Motor: After move to -0.128510, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:40.064 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:45:40.064 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:40.064 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:40.064 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:40.064 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:40.064 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:40.064 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:40.064 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:40.064 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:40.064 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:40.064 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:40.064 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:40.064 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:40.074 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:45:40.074 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:40.074 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:40.074 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:40.084 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:45:40.084 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:45:40.084 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:45:40.084 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:45:40.084 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28249 150\n [Camera]
17-03-18 02:45:40.284 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:40.654 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.003063,
17-03-18 02:45:40.684 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:40.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:40.684 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:40.684 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:40.684 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:45:40.684 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:40.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:40.684 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:40.684 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:40.684 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:40.874 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28249 783
17-03-18 02:45:41.024 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:41.064 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:45:41.064 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:45:41.064 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:41.064 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:45:41.064 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:45:41.064 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:41.074 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:45:41.074 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:45:41.074 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:45:41.084 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:45:41.214 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:41.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:41.214 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:41.214 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:41.214 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:45:41.214 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:41.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:41.214 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:41.214 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:41.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:45:41.404 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:41.404 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:41.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28249 150' command took 2 ms to send, 1317 ms to get response, and 1324 ms overall
17-03-18 02:45:41.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:41.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.12851422249188. ------
17-03-18 02:45:41.534 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:41.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:41.544 -07 000000444 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13480 mm
17-03-18 02:45:41.544 -07 000000444 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:41.544 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:41.544 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29446, sync = True, waitForSettling = False)
17-03-18 02:45:41.544 -07 000000512 INF: Z Motor: Moving to -0.134795 mm, started at -0.128514 mm, distance = -6.28 um
17-03-18 02:45:41.544 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:45:41.544 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:45:41.544 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:41.554 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:41.554 -07 000000512 INF: FPGA: Xmit ZDACW 29446\n [Z Motor]
17-03-18 02:45:41.554 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:45:41.564 -07 000000512 INF: FPGA: 'ZDACW 29446' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:45:41.564 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:41.564 -07 000000569 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:45:41.574 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:41.574 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:45:41.574 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:41.574 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:41.574 -07 000000462 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:45:41.584 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:41.584 -07 000000569 INF: FPGA: Recv ZDACR 29446
17-03-18 02:45:41.594 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:41.594 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:45:41.594 -07 000000512 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:45:41.614 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:45:41.614 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:45:41.614 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:41.614 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:45:41.614 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:45:41.614 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:41.614 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:41.624 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:45:41.624 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:45:41.624 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:45:41.774 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:41.774 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:41.964 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:45:41.964 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:45:42.014 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:42.014 -07 000000576 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:45:42.024 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:42.024 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:42.024 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:45:42.024 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 02:45:42.974 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:42.974 -07 000000512 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:45:42.984 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:42.984 -07 000000462 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:43.004 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:43.004 -07 000000462 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:45:43.004 -07 000000462 INF: Y Motor: Moved to 72.3501 after 1465 ms (table move)
17-03-18 02:45:43.014 -07 000000444 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134795 mm (DAC = 29446)
17-03-18 02:45:43.014 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.014 -07 000000430 INF: FPGA: Recv ZSGSRD 30276
17-03-18 02:45:43.024 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:45:43.024 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.024 -07 000000629 INF: FPGA: Recv ZSGSRD 30269
17-03-18 02:45:43.034 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.034 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.034 -07 000000512 INF: FPGA: Recv ZSGSRD 30275
17-03-18 02:45:43.044 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.044 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.044 -07 000000618 INF: FPGA: Recv ZSGSRD 30280
17-03-18 02:45:43.054 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.054 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.054 -07 000000606 INF: FPGA: Recv ZSGSRD 30268
17-03-18 02:45:43.064 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.064 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.064 -07 000000424 INF: FPGA: Recv ZSGSRD 30274
17-03-18 02:45:43.074 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.074 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.074 -07 000000569 INF: FPGA: Recv ZSGSRD 30276
17-03-18 02:45:43.084 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.084 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.084 -07 000000512 INF: FPGA: Recv ZSGSRD 30268
17-03-18 02:45:43.094 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.094 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.094 -07 000000618 INF: FPGA: Recv ZSGSRD 30268
17-03-18 02:45:43.104 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.104 -07 000000444 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:43.104 -07 000000502 INF: FPGA: Recv ZSGSRD 30274
17-03-18 02:45:43.114 -07 000000444 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.114 -07 000000444 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:43.114 -07 000000424 INF: FPGA: Recv ZPIEZORD 26105
17-03-18 02:45:43.124 -07 000000444 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:43.124 -07 000000444 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.493 V. Piezo Error = -9.2 V.
17-03-18 02:45:43.124 -07 000000444 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30273 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30274 (-134.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30268 (-134.0 uncal um), Max = 30280 (-134.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:45:43.124 -07 000000444 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30273, posNoise = 7, negNoise = 5
17-03-18 02:45:43.124 -07 000000444 INF: Z Motor: After move to -0.134795, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:43.124 -07 000000444 INF: Z Motor: Settle wait time = 1470 ms, measure time = 107 ms (allowed 150 ms), total time = 1577 ms
17-03-18 02:45:43.124 -07 000000444 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:43.174 -07 000000444 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-18 02:45:43.174 -07 000000444 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:43.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:43.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:43.184 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:43.184 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:43.184 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:43.184 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:43.184 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:45:43.184 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:43.184 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:43.184 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:43.194 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:45:43.194 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:45:43.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:43.234 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:43.534 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:43.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:43.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:43.544 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:45:43.574 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:43.574 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:43.574 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:45:43.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 02:45:43.664 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:43.664 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:43.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:45:43.774 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:43.774 -07 000000629 INF: Autofocus start
17-03-18 02:45:43.774 -07 000000629 INF: MeasureProfile start
17-03-18 02:45:43.774 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:43.784 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:43.784 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:43.784 -07 000000629 INF: MeasureProfile done
17-03-18 02:45:43.784 -07 000000629 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:45:43.784 -07 000000629 INF: Autofocus finished
17-03-18 02:45:43.984 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:43.984 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:43.984 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.134803526178664. ----------
17-03-18 02:45:43.984 -07 000000610 INF: Cycle	103	Tile	16	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:43.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27987, sync = True, waitForSettling = True)
17-03-18 02:45:43.994 -07 000000610 INF: Z Motor: Moving to -0.128116 mm, started at -0.134804 mm, distance = 6.69 um
17-03-18 02:45:43.994 -07 000000610 INF: FPGA: Xmit ZDACW 27987\n [Z Motor]
17-03-18 02:45:43.994 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:45:44.004 -07 000000610 INF: FPGA: 'ZDACW 27987' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:45:44.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:44.004 -07 000000590 INF: FPGA: Recv ZDACR 27987
17-03-18 02:45:44.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:44.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.164 -07 000000591 INF: FPGA: Recv ZSGSRD 29232
17-03-18 02:45:44.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:44.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.174 -07 000000444 INF: FPGA: Recv ZSGSRD 29234
17-03-18 02:45:44.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.184 -07 000000502 INF: FPGA: Recv ZSGSRD 29230
17-03-18 02:45:44.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.194 -07 000000579 INF: FPGA: Recv ZSGSRD 29237
17-03-18 02:45:44.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.204 -07 000000430 INF: FPGA: Recv ZSGSRD 29236
17-03-18 02:45:44.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.214 -07 000000591 INF: FPGA: Recv ZSGSRD 29230
17-03-18 02:45:44.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.224 -07 000000455 INF: FPGA: Recv ZSGSRD 29232
17-03-18 02:45:44.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.234 -07 000000424 INF: FPGA: Recv ZSGSRD 29239
17-03-18 02:45:44.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.244 -07 000000576 INF: FPGA: Recv ZSGSRD 29238
17-03-18 02:45:44.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:44.254 -07 000000590 INF: FPGA: Recv ZSGSRD 29234
17-03-18 02:45:44.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:44.264 -07 000000501 INF: FPGA: Recv ZPIEZORD 24699
17-03-18 02:45:44.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:44.274 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.9 V.
17-03-18 02:45:44.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29234 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29234 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29230 (-127.3 uncal um), Max = 29239 (-127.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:45:44.274 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29234, posNoise = 5, negNoise = 4
17-03-18 02:45:44.274 -07 000000610 INF: Z Motor: After move to -0.128116, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:44.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:45:44.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:44.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:44.274 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:44.274 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:44.274 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:44.274 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:44.274 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:44.274 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:44.274 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:44.274 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:44.274 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:44.274 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:44.284 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:45:44.284 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:44.284 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:44.284 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:44.294 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:45:44.294 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:45:44.294 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:45:44.294 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:45:44.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28164 150\n [Camera]
17-03-18 02:45:44.494 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:44.894 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:45:44.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:45:44.894 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:45:44.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:45:44.894 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:44.894 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:44.904 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:44.904 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:44.904 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:44.904 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:45.084 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28164 783
17-03-18 02:45:45.234 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:45.294 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:45:45.294 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:45:45.294 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:45.304 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:45:45.304 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:45:45.304 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:45.304 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:45.304 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:45:45.304 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:45.314 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:45:45.424 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:45.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:45.424 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:45.424 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:45.424 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:45.424 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:45:45.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:45.424 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:45.424 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:45.424 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:45:45.614 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:45:45.614 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:45.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28164 150' command took 2 ms to send, 1317 ms to get response, and 1324 ms overall
17-03-18 02:45:45.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:45.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128128769763375. ------
17-03-18 02:45:45.744 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13473 mm
17-03-18 02:45:45.744 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:45.744 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:45:45.744 -07 000000606 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-18 02:45:45.744 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29432, sync = True, waitForSettling = False)
17-03-18 02:45:45.744 -07 000000424 INF: Z Motor: Moving to -0.134731 mm, started at -0.128129 mm, distance = -6.60 um
17-03-18 02:45:45.754 -07 000000424 INF: FPGA: Xmit ZDACW 29432\n [Z Motor]
17-03-18 02:45:45.754 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:45:45.764 -07 000000424 INF: FPGA: 'ZDACW 29432' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:45:45.764 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:45.764 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:45.774 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:45:45.774 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:45.774 -07 000000444 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:45:45.784 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:45.784 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 02:45:45.784 -07 000000606 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:45.784 -07 000000606 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:45.784 -07 000000606 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:45:45.784 -07 000000561 INF: FPGA: Recv ZDACR 29432
17-03-18 02:45:45.794 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:45.794 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:45.794 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:45:45.804 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:45.824 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:45:45.824 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:45:45.824 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:45.824 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:45:45.824 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:45:45.824 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:45.834 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:45.834 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:45:45.834 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:45.844 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:45:45.994 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:45.994 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:46.064 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.0344,
17-03-18 02:45:46.174 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:45:46.174 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:45:46.224 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:46.224 -07 000000467 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:45:46.234 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:46.234 -07 000000606 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:46.234 -07 000000606 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:45:46.234 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-18 02:45:46.504 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:46.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:47.184 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:47.184 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:45:47.194 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:47.194 -07 000000606 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:47.214 -07 000000606 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:47.214 -07 000000606 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:47.214 -07 000000606 INF: Y Motor: Moved to 73.1763 after 1471 ms (table move)
17-03-18 02:45:47.224 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134731 mm (DAC = 29432)
17-03-18 02:45:47.224 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.224 -07 000000579 INF: FPGA: Recv ZSGSRD 30270
17-03-18 02:45:47.234 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:47.234 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.234 -07 000000512 INF: FPGA: Recv ZSGSRD 30259
17-03-18 02:45:47.244 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.244 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.244 -07 000000424 INF: FPGA: Recv ZSGSRD 30257
17-03-18 02:45:47.254 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.254 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.254 -07 000000590 INF: FPGA: Recv ZSGSRD 30265
17-03-18 02:45:47.264 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.264 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.264 -07 000000561 INF: FPGA: Recv ZSGSRD 30269
17-03-18 02:45:47.274 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.274 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.274 -07 000000461 INF: FPGA: Recv ZSGSRD 30264
17-03-18 02:45:47.284 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.284 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.284 -07 000000444 INF: FPGA: Recv ZSGSRD 30259
17-03-18 02:45:47.294 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.294 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.294 -07 000000462 INF: FPGA: Recv ZSGSRD 30258
17-03-18 02:45:47.304 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.304 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.304 -07 000000502 INF: FPGA: Recv ZSGSRD 30262
17-03-18 02:45:47.314 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.314 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:47.314 -07 000000561 INF: FPGA: Recv ZSGSRD 30266
17-03-18 02:45:47.324 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.324 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:47.324 -07 000000591 INF: FPGA: Recv ZPIEZORD 26034
17-03-18 02:45:47.334 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:47.334 -07 000000455 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.3 V.
17-03-18 02:45:47.334 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30263 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30263 (-133.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30257 (-133.9 uncal um), Max = 30270 (-134.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:45:47.334 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30263, posNoise = 7, negNoise = 6
17-03-18 02:45:47.334 -07 000000455 INF: Z Motor: After move to -0.134731, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:47.334 -07 000000455 INF: Z Motor: Settle wait time = 1476 ms, measure time = 107 ms (allowed 150 ms), total time = 1583 ms
17-03-18 02:45:47.334 -07 000000455 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:47.384 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1637 ms
17-03-18 02:45:47.384 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:47.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:47.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:47.384 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:47.384 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:47.384 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:47.384 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:47.384 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:47.384 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:47.394 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:45:47.394 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:47.404 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:45:47.404 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:45:47.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:47.454 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:47.754 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:47.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:47.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:47.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:45:47.784 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:47.794 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:47.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 387 ms overall
17-03-18 02:45:47.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:45:47.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:47.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:45:47.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:45:47.894 -07 000000569 INF: Autofocus start
17-03-18 02:45:47.894 -07 000000569 INF: MeasureProfile start
17-03-18 02:45:47.894 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:47.904 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:47.914 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:47.914 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:47.914 -07 000000569 INF: MeasureProfile done
17-03-18 02:45:47.914 -07 000000569 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:45:47.914 -07 000000569 INF: Autofocus finished
17-03-18 02:45:48.114 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:48.114 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:48.114 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134739284057247. ----------
17-03-18 02:45:48.114 -07 000000610 INF: Cycle	103	Tile	17	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:48.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27926, sync = True, waitForSettling = True)
17-03-18 02:45:48.124 -07 000000610 INF: Z Motor: Moving to -0.127837 mm, started at -0.134739 mm, distance = 6.90 um
17-03-18 02:45:48.124 -07 000000610 INF: FPGA: Xmit ZDACW 27926\n [Z Motor]
17-03-18 02:45:48.124 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:45:48.134 -07 000000610 INF: FPGA: 'ZDACW 27926' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:45:48.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:48.134 -07 000000501 INF: FPGA: Recv ZDACR 27926
17-03-18 02:45:48.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:48.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.294 -07 000000561 INF: FPGA: Recv ZSGSRD 29193
17-03-18 02:45:48.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:48.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.304 -07 000000629 INF: FPGA: Recv ZSGSRD 29190
17-03-18 02:45:48.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.314 -07 000000626 INF: FPGA: Recv ZSGSRD 29183
17-03-18 02:45:48.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.324 -07 000000424 INF: FPGA: Recv ZSGSRD 29190
17-03-18 02:45:48.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.334 -07 000000502 INF: FPGA: Recv ZSGSRD 29191
17-03-18 02:45:48.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.344 -07 000000444 INF: FPGA: Recv ZSGSRD 29188
17-03-18 02:45:48.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.354 -07 000000569 INF: FPGA: Recv ZSGSRD 29182
17-03-18 02:45:48.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.364 -07 000000626 INF: FPGA: Recv ZSGSRD 29188
17-03-18 02:45:48.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.374 -07 000000591 INF: FPGA: Recv ZSGSRD 29192
17-03-18 02:45:48.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:48.384 -07 000000502 INF: FPGA: Recv ZSGSRD 29189
17-03-18 02:45:48.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:48.394 -07 000000561 INF: FPGA: Recv ZPIEZORD 24663
17-03-18 02:45:48.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:48.404 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.261 V. Piezo Error = -9.9 V.
17-03-18 02:45:48.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29189 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29190 (-127.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29182 (-127.0 uncal um), Max = 29193 (-127.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:45:48.404 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29189, posNoise = 4, negNoise = 7
17-03-18 02:45:48.404 -07 000000610 INF: Z Motor: After move to -0.127837, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:48.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:45:48.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:48.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:48.404 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:48.404 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:48.404 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:48.404 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:48.404 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:48.404 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:48.404 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:48.404 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:48.404 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:48.404 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:48.414 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:48.414 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:48.414 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:45:48.414 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:48.424 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:45:48.424 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:45:48.424 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:45:48.424 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:45:48.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28103 150\n [Camera]
17-03-18 02:45:48.624 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:49.024 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:49.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:49.024 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:49.024 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:49.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:49.024 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:49.024 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:49.024 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:45:49.024 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:49.024 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:49.214 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28103 783
17-03-18 02:45:49.364 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:49.404 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:45:49.404 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:45:49.404 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:49.404 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:45:49.404 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:45:49.404 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:49.414 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:49.414 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:49.414 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:45:49.414 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:45:49.554 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:49.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:49.554 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:49.554 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:49.554 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:45:49.554 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:49.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:49.554 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:49.554 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:49.554 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:45:49.744 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:49.744 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:49.744 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28103 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:45:49.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:49.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127839680216996. ------
17-03-18 02:45:49.754 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:49.754 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13422 mm
17-03-18 02:45:49.754 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:49.754 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:49.754 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:45:49.754 -07 000000569 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:45:49.754 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29321, sync = True, waitForSettling = False)
17-03-18 02:45:49.754 -07 000000576 INF: Z Motor: Moving to -0.134223 mm, started at -0.127840 mm, distance = -6.38 um
17-03-18 02:45:49.764 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:49.764 -07 000000576 INF: FPGA: Xmit ZDACW 29321\n [Z Motor]
17-03-18 02:45:49.764 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:45:49.774 -07 000000576 INF: FPGA: 'ZDACW 29321' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:45:49.774 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:49.774 -07 000000579 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:45:49.784 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:49.784 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:45:49.784 -07 000000569 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:49.784 -07 000000569 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:49.784 -07 000000569 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:45:49.794 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:49.794 -07 000000462 INF: FPGA: Recv ZDACR 29321
17-03-18 02:45:49.804 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:49.804 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:45:49.804 -07 000000576 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:45:49.954 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:45:49.954 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:45:49.954 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:49.964 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:45:49.964 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:45:49.964 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:49.964 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:49.964 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:45:49.964 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:45:49.974 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:45:49.984 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:49.984 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:45:50.174 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:45:50.174 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:45:50.214 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:50.214 -07 000000512 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:45:50.224 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:45:50.224 -07 000000569 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:50.224 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:45:50.224 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-18 02:45:51.174 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:51.174 -07 000000455 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:45:51.184 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:51.184 -07 000000569 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:51.204 -07 000000569 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:51.204 -07 000000569 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:51.204 -07 000000569 INF: Y Motor: Moved to 74.0083 after 1443 ms (table move)
17-03-18 02:45:51.204 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134223 mm (DAC = 29321)
17-03-18 02:45:51.204 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.204 -07 000000606 INF: FPGA: Recv ZSGSRD 30184
17-03-18 02:45:51.214 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:51.214 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.214 -07 000000455 INF: FPGA: Recv ZSGSRD 30185
17-03-18 02:45:51.224 -07 000000467 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.224 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.224 -07 000000569 INF: FPGA: Recv ZSGSRD 30180
17-03-18 02:45:51.234 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.234 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.234 -07 000000579 INF: FPGA: Recv ZSGSRD 30187
17-03-18 02:45:51.244 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.244 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.244 -07 000000424 INF: FPGA: Recv ZSGSRD 30186
17-03-18 02:45:51.254 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.254 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.254 -07 000000629 INF: FPGA: Recv ZSGSRD 30188
17-03-18 02:45:51.264 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.264 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.264 -07 000000455 INF: FPGA: Recv ZSGSRD 30183
17-03-18 02:45:51.274 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.274 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.274 -07 000000569 INF: FPGA: Recv ZSGSRD 30184
17-03-18 02:45:51.284 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.284 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.284 -07 000000579 INF: FPGA: Recv ZSGSRD 30180
17-03-18 02:45:51.294 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.294 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:51.294 -07 000000424 INF: FPGA: Recv ZSGSRD 30182
17-03-18 02:45:51.304 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.304 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:51.304 -07 000000626 INF: FPGA: Recv ZPIEZORD 25994
17-03-18 02:45:51.314 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:51.314 -07 000000467 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.474 V. Piezo Error = -9.2 V.
17-03-18 02:45:51.314 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30184 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30184 (-133.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30180 (-133.4 uncal um), Max = 30188 (-133.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:45:51.314 -07 000000467 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30184, posNoise = 4, negNoise = 4
17-03-18 02:45:51.314 -07 000000467 INF: Z Motor: After move to -0.134223, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:51.314 -07 000000467 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-18 02:45:51.314 -07 000000467 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:51.364 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 02:45:51.364 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:51.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:51.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:51.364 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:51.364 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:51.364 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:51.364 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:51.364 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:51.364 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:51.374 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:51.374 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:51.374 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:45:51.374 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:45:51.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:51.424 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.03576,
17-03-18 02:45:51.424 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:51.504 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:51.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:51.724 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:51.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:51.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:51.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-18 02:45:51.764 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:51.764 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:51.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:45:51.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:45:51.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:51.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:45:51.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:45:51.864 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:51.864 -07 000000424 INF: Autofocus start
17-03-18 02:45:51.864 -07 000000424 INF: MeasureProfile start
17-03-18 02:45:51.864 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:51.874 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:51.874 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:51.874 -07 000000424 INF: MeasureProfile done
17-03-18 02:45:51.874 -07 000000424 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:45:51.874 -07 000000424 INF: Autofocus finished
17-03-18 02:45:52.074 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:52.074 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 02:45:52.074 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134231771298048. ----------
17-03-18 02:45:52.084 -07 000000610 INF: Cycle	103	Tile	18	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:52.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27816, sync = True, waitForSettling = True)
17-03-18 02:45:52.084 -07 000000610 INF: Z Motor: Moving to -0.127333 mm, started at -0.134232 mm, distance = 6.90 um
17-03-18 02:45:52.084 -07 000000610 INF: FPGA: Xmit ZDACW 27816\n [Z Motor]
17-03-18 02:45:52.084 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:45:52.094 -07 000000610 INF: FPGA: 'ZDACW 27816' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:52.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:52.094 -07 000000501 INF: FPGA: Recv ZDACR 27816
17-03-18 02:45:52.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:52.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.254 -07 000000618 INF: FPGA: Recv ZSGSRD 29117
17-03-18 02:45:52.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:52.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.264 -07 000000502 INF: FPGA: Recv ZSGSRD 29118
17-03-18 02:45:52.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.274 -07 000000455 INF: FPGA: Recv ZSGSRD 29112
17-03-18 02:45:52.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.284 -07 000000561 INF: FPGA: Recv ZSGSRD 29108
17-03-18 02:45:52.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.294 -07 000000569 INF: FPGA: Recv ZSGSRD 29111
17-03-18 02:45:52.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.304 -07 000000591 INF: FPGA: Recv ZSGSRD 29112
17-03-18 02:45:52.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.314 -07 000000629 INF: FPGA: Recv ZSGSRD 29114
17-03-18 02:45:52.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.324 -07 000000444 INF: FPGA: Recv ZSGSRD 29109
17-03-18 02:45:52.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.334 -07 000000430 INF: FPGA: Recv ZSGSRD 29110
17-03-18 02:45:52.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:52.344 -07 000000501 INF: FPGA: Recv ZSGSRD 29109
17-03-18 02:45:52.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:52.354 -07 000000590 INF: FPGA: Recv ZPIEZORD 24574
17-03-18 02:45:52.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:52.364 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.9 V.
17-03-18 02:45:52.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29112 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29112 (-126.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29108 (-126.5 uncal um), Max = 29118 (-126.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:45:52.364 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29112, posNoise = 6, negNoise = 4
17-03-18 02:45:52.364 -07 000000610 INF: Z Motor: After move to -0.127333, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:52.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:45:52.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:52.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:52.364 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:52.364 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:52.364 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:52.364 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:52.364 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:52.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:52.364 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:45:52.364 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:52.364 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:52.364 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:52.374 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:52.374 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:52.374 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:45:52.374 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:52.384 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:45:52.384 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:45:52.384 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:45:52.384 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:45:52.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 27992 150\n [Camera]
17-03-18 02:45:52.584 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:52.984 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:52.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:52.984 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:52.984 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:52.984 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:45:52.984 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:52.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:52.984 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:52.984 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:52.984 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:53.174 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27992 783
17-03-18 02:45:53.324 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:53.374 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:45:53.374 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:45:53.374 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:53.374 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:45:53.374 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:45:53.374 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:53.384 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:53.384 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:45:53.384 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:45:53.384 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:45:53.514 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:53.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:53.524 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:53.524 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:53.524 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:45:53.524 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:53.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:53.524 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:53.524 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:53.524 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:45:53.714 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:53.714 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:53.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 27992 150' command took 2 ms to send, 1321 ms to get response, and 1326 ms overall
17-03-18 02:45:53.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:45:53.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.12734501588208. ------
17-03-18 02:45:53.714 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:53.714 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13329 mm
17-03-18 02:45:53.714 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:45:53.844 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:53.844 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 02:45:53.844 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:45:53.844 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:45:53.844 -07 000000455 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:45:53.844 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29116, sync = True, waitForSettling = False)
17-03-18 02:45:53.844 -07 000000501 INF: Z Motor: Moving to -0.133285 mm, started at -0.127345 mm, distance = -5.94 um
17-03-18 02:45:53.854 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:53.854 -07 000000424 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:45:53.864 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:45:53.864 -07 000000455 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:53.864 -07 000000501 INF: FPGA: Xmit ZDACW 29116\n [Z Motor]
17-03-18 02:45:53.864 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:45:53.864 -07 000000455 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:45:53.864 -07 000000455 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:45:53.874 -07 000000501 INF: FPGA: 'ZDACW 29116' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:45:53.874 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:53.874 -07 000000467 INF: FPGA: Recv ZDACR 29116
17-03-18 02:45:53.884 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:45:53.884 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:53.884 -07 000000501 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:45:53.924 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 02:45:53.924 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:45:53.924 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:53.924 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 02:45:53.924 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:45:53.924 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:53.934 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:53.934 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:45:53.934 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:45:53.934 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:45:54.044 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:45:54.044 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:45:54.254 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:45:54.254 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:45:54.284 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:54.294 -07 000000629 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:45:54.294 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-18 02:45:54.294 -07 000000455 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:54.294 -07 000000455 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:45:54.294 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-18 02:45:55.244 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:55.244 -07 000000444 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:45:55.254 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:45:55.254 -07 000000455 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:55.264 -07 000000455 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:45:55.264 -07 000000455 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:45:55.264 -07 000000455 INF: Y Motor: Moved to 74.8320 after 1426 ms (table move)
17-03-18 02:45:55.274 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133285 mm (DAC = 29116)
17-03-18 02:45:55.274 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.274 -07 000000561 INF: FPGA: Recv ZSGSRD 30045
17-03-18 02:45:55.284 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:55.284 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.284 -07 000000576 INF: FPGA: Recv ZSGSRD 30035
17-03-18 02:45:55.294 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.294 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.294 -07 000000590 INF: FPGA: Recv ZSGSRD 30031
17-03-18 02:45:55.304 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.304 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.304 -07 000000455 INF: FPGA: Recv ZSGSRD 30036
17-03-18 02:45:55.314 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.314 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.314 -07 000000461 INF: FPGA: Recv ZSGSRD 30039
17-03-18 02:45:55.324 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.324 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.324 -07 000000606 INF: FPGA: Recv ZSGSRD 30039
17-03-18 02:45:55.334 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.334 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.334 -07 000000561 INF: FPGA: Recv ZSGSRD 30041
17-03-18 02:45:55.344 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.344 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.344 -07 000000591 INF: FPGA: Recv ZSGSRD 30046
17-03-18 02:45:55.354 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.354 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.354 -07 000000467 INF: FPGA: Recv ZSGSRD 30037
17-03-18 02:45:55.364 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.364 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:55.364 -07 000000501 INF: FPGA: Recv ZSGSRD 30034
17-03-18 02:45:55.374 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.374 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:55.374 -07 000000606 INF: FPGA: Recv ZPIEZORD 25828
17-03-18 02:45:55.384 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:55.384 -07 000000569 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.3 V.
17-03-18 02:45:55.384 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30038 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30038 (-132.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30031 (-132.5 uncal um), Max = 30046 (-132.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:45:55.384 -07 000000569 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30038, posNoise = 8, negNoise = 7
17-03-18 02:45:55.384 -07 000000569 INF: Z Motor: After move to -0.133285, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:55.384 -07 000000569 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-18 02:45:55.384 -07 000000569 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:45:55.434 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-18 02:45:55.434 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:45:55.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:55.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:55.434 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:55.434 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:55.434 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:45:55.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:55.434 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:45:55.434 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:45:55.444 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:45:55.444 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:45:55.454 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:45:55.454 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 02:45:55.454 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:45:55.504 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:45:55.804 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:45:55.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:45:55.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:45:55.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:45:55.844 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:45:55.844 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 02:45:55.844 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:45:55.924 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:45:55.924 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:55.924 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:45:55.924 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:45:55.944 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:45:55.944 -07 000000561 INF: Autofocus start
17-03-18 02:45:55.944 -07 000000561 INF: MeasureProfile start
17-03-18 02:45:55.944 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:45:55.954 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:45:55.954 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:45:55.954 -07 000000561 INF: MeasureProfile done
17-03-18 02:45:55.954 -07 000000561 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:45:55.954 -07 000000561 INF: Autofocus finished
17-03-18 02:45:56.154 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:45:56.154 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:45:56.154 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133293836325351. ----------
17-03-18 02:45:56.154 -07 000000610 INF: Cycle	103	Tile	19	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:45:56.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27657, sync = True, waitForSettling = True)
17-03-18 02:45:56.164 -07 000000610 INF: Z Motor: Moving to -0.126606 mm, started at -0.133294 mm, distance = 6.69 um
17-03-18 02:45:56.164 -07 000000610 INF: FPGA: Xmit ZDACW 27657\n [Z Motor]
17-03-18 02:45:56.164 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:45:56.174 -07 000000610 INF: FPGA: 'ZDACW 27657' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:45:56.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:45:56.184 -07 000000444 INF: FPGA: Recv ZDACR 27657
17-03-18 02:45:56.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:45:56.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:45:56.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.344 -07 000000579 INF: FPGA: Recv ZSGSRD 28999
17-03-18 02:45:56.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.354 -07 000000461 INF: FPGA: Recv ZSGSRD 28995
17-03-18 02:45:56.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.364 -07 000000626 INF: FPGA: Recv ZSGSRD 29001
17-03-18 02:45:56.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.374 -07 000000430 INF: FPGA: Recv ZSGSRD 28998
17-03-18 02:45:56.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.384 -07 000000512 INF: FPGA: Recv ZSGSRD 28992
17-03-18 02:45:56.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.394 -07 000000629 INF: FPGA: Recv ZSGSRD 29007
17-03-18 02:45:56.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.404 -07 000000576 INF: FPGA: Recv ZSGSRD 28992
17-03-18 02:45:56.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.414 -07 000000590 INF: FPGA: Recv ZSGSRD 28992
17-03-18 02:45:56.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.424 -07 000000502 INF: FPGA: Recv ZSGSRD 29000
17-03-18 02:45:56.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:45:56.434 -07 000000626 INF: FPGA: Recv ZSGSRD 28991
17-03-18 02:45:56.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:45:56.444 -07 000000462 INF: FPGA: Recv ZPIEZORD 24488
17-03-18 02:45:56.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:45:56.454 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.220 V. Piezo Error = -9.9 V.
17-03-18 02:45:56.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.6 um, Read 10 ADC samples: Avg = 28997 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28996 (-125.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 28991 (-125.8 uncal um), Max = 29007 (-125.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:45:56.454 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28997, posNoise = 10, negNoise = 6
17-03-18 02:45:56.454 -07 000000610 INF: Z Motor: After move to -0.126606, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:45:56.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-18 02:45:56.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:45:56.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:45:56.454 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:45:56.454 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:45:56.454 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:45:56.454 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:45:56.454 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:45:56.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:45:56.454 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:45:56.454 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:45:56.454 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:45:56.454 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:45:56.464 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:45:56.464 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:45:56.464 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:45:56.464 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:45:56.474 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:45:56.474 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:45:56.474 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:45:56.474 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:45:56.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 27834 150\n [Camera]
17-03-18 02:45:56.514 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:45:56.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 102. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:45:56.674 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:45:56.784 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.011254,
17-03-18 02:45:57.074 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:45:57.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:45:57.074 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:57.074 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:45:57.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:45:57.074 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:57.074 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:57.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:45:57.084 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:57.084 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:45:57.264 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27834 783
17-03-18 02:45:57.414 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:45:57.454 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:45:57.454 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 02:45:57.454 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:57.454 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:57.454 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:45:57.454 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:45:57.454 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:45:57.454 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:57.464 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:57.464 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:45:57.604 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:45:57.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:45:57.604 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:45:57.604 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:45:57.614 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-18 02:45:57.614 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:45:57.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:45:57.614 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:45:57.614 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:45:57.614 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:45:57.794 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:45:57.794 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:45:57.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 27834 150' command took 2 ms to send, 1319 ms to get response, and 1323 ms overall
17-03-18 02:45:58.004 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:45:58.004 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:45:58.004 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:58.004 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:45:58.004 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:45:58.004 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:45:58.004 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:58.004 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:45:58.004 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:45:58.004 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:45:58.014 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:45:58.054 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-18 02:45:58.054 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:45:58.094 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:45:58.224 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-18 02:45:58.224 -07 000000610 INF: Imaging Cycle 103: ScanTilesCommand Cycle 103 time end. Duration was 162844 ms.
17-03-18 02:45:58.224 -07 000000610 INF: =================== Cycle #103 ===================
17-03-18 02:45:58.224 -07 000000610 INF: ===================  ===================
17-03-18 02:45:58.224 -07 000000579 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:45:58.224 -07 000000512 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 02:45:58.234 -07 000000579 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:45:58.234 -07 000000579 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 02:45:58.234 -07 000000579 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 103, FrontChillerTemperature: 4.011254, FrontChillerHeatSinkTemperature: 0.308617, AmbientTemperature: 18.69508, FlowCellCompartmentTemperature: 21.98528, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.42499, GreenLEDSensorTemperature: 27.12177, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 02:45:58.314 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.