17-03-18 02:45:58.364 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:45:58.374 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:45:58.374 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 02:45:58.374 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:45:58.374 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:45:58.384 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:45:58.384 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:45:58.384 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:45:58.384 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:45:58.384 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:45:58.494 -07 000000430 INF: FPGA: Recv YMVTO 154379 878
17-03-18 02:45:58.494 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 118 ms overall
17-03-18 02:45:58.494 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 02:45:58.494 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 02:45:58.494 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 02:46:01.494 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:46:01.494 -07 000000606 INF: FPGA: Recv YRDPOS 154387
17-03-18 02:46:01.504 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:46:01.504 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:46:01.514 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:46:01.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1531, R2=1595, Total=3126. Warn if over 250 bubbles per interval.
17-03-18 02:46:01.524 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:46:01.524 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 02:46:01.524 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3152 ms
17-03-18 02:46:01.524 -07 000000610 INF: =================== Cycle #104, Flow Cell Temp 60° ===================
17-03-18 02:46:01.524 -07 000000610 INF: =================== Cycle #104, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:46:01.594 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:46:01.594 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-18 02:46:01.604 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:46:01.604 -07 000000610 INF: =================== Cycle #104, Flow Cell Temp 60° ===================
17-03-18 02:46:01.604 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:46:01.604 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:46:01.604 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:01.634 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:46:01.634 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:46:01.634 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:46:01.934 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:46:01.954 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:46:01.954 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:46:02.004 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:02.024 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:46:02.024 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:46:02.124 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:46:02.124 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:46:02.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:02.144 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.005817,
17-03-18 02:46:02.154 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:46:02.154 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:46:02.154 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:46:02.284 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:46:02.324 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:05.454 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:05.484 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:05.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:05.934 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:06.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:06.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:06.384 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:46:06.384 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:46:06.514 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:06.514 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 4
17-03-18 02:46:06.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=4, R2=2, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1535, R2=1597, Total=3132. Warn if over 250 bubbles per interval.
17-03-18 02:46:06.544 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:46:06.544 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:46:06.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:06.704 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:46:06.704 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:46:06.704 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:46:06.834 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:46:06.864 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:07.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:07.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:07.324 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:46:07.324 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:46:07.504 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.999021,
17-03-18 02:46:08.544 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:46:08.544 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:46:08.544 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:08.564 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:46:08.564 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:46:08.564 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:46:08.704 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:46:08.724 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:46:08.724 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:46:08.774 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:08.794 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:46:08.794 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:46:08.894 -07 000000610 INF: =================== Cycle #104, Pumping Reagent CMS (4) ===================
17-03-18 02:46:08.894 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:46:08.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:08.924 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:46:08.924 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:46:08.924 -07 000000610 INF: =================== Cycle #104, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:46:09.054 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:46:09.094 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:10.534 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:10.564 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:10.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:11.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:11.014 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:46:11.014 -07 000000610 INF: =================== Cycle #104, Pumping Reagent CMS (4) ===================
17-03-18 02:46:11.144 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:11.174 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:46:11.174 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:46:11.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:11.334 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:46:11.334 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:46:11.334 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:46:11.464 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:46:11.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:11.514 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-18 02:46:11.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1535, R2=1599, Total=3134. Warn if over 250 bubbles per interval.
17-03-18 02:46:11.924 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:11.954 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:11.954 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:46:11.954 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:46:12.864 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.014009,
17-03-18 02:46:13.174 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:46:13.174 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:46:13.174 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:13.194 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:46:13.194 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:46:13.194 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:46:13.344 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:46:13.364 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:46:13.364 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:46:13.414 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:13.434 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:46:13.434 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:46:13.534 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:46:13.534 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:46:13.534 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:13.564 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:46:13.564 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:46:13.564 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:46:13.694 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:46:13.734 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:14.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:14.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:14.634 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:46:14.634 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:46:14.764 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:14.794 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:46:14.794 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:46:14.924 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:14.954 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:46:14.954 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:46:14.954 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:46:15.084 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:46:15.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:15.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:15.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:15.574 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:46:15.574 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:46:15.574 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:46:15.574 -07 000000629 INF: WaitCommand(10000) start
17-03-18 02:46:15.574 -07 000000455 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:46:16.514 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:46:16.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1535, R2=1599, Total=3134. Warn if over 250 bubbles per interval.
17-03-18 02:46:16.794 -07 000000455 INF: AsyncDelayTimer waited 1215ms
17-03-18 02:46:16.794 -07 000000455 INF: LanePump: Xmit /1?\r
17-03-18 02:46:16.824 -07 000000455 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:46:16.824 -07 000000455 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:46:16.954 -07 000000455 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:46:16.994 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:18.224 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.019446,
17-03-18 02:46:18.524 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:18.554 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:18.974 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:19.004 -07 000000455 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:19.004 -07 000000455 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:46:19.004 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:46:19.004 -07 000000455 INF: ===================  ===================
17-03-18 02:46:21.514 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:46:21.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1535, R2=1599, Total=3134. Warn if over 250 bubbles per interval.
17-03-18 02:46:23.584 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.011254,
17-03-18 02:46:25.584 -07 000000629 INF: WaitCommand(10000) end
17-03-18 02:46:25.584 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:46:25.584 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:46:25.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:25.614 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:46:25.614 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:46:25.614 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:46:25.744 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:46:25.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:26.514 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 02:46:26.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1536, R2=1599, Total=3135. Warn if over 250 bubbles per interval.
17-03-18 02:46:28.944 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.981281,
17-03-18 02:46:31.514 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:46:31.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1536, R2=1600, Total=3136. Warn if over 250 bubbles per interval.
17-03-18 02:46:31.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:31.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:32.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:32.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:32.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:32.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:33.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:33.294 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:33.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:33.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:33.744 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:46:33.744 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:46:33.874 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:33.904 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:46:33.904 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:46:34.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:34.064 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:46:34.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:46:34.064 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:46:34.194 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:46:34.224 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:34.304 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.989471,
17-03-18 02:46:34.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:34.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:34.684 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:46:34.684 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:46:35.904 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:46:35.904 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:46:35.904 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:35.924 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:46:35.924 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:46:35.924 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:46:36.134 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:46:36.154 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:46:36.154 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:46:36.204 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:36.224 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:46:36.224 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:46:36.324 -07 000000610 INF: =================== Cycle #104, Pumping Reagent IMT (1) ===================
17-03-18 02:46:36.324 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:46:36.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:36.354 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:46:36.354 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:46:36.354 -07 000000610 INF: =================== Cycle #104, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:46:36.484 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:46:36.514 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:46:36.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:46:36.524 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:37.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:37.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:38.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:38.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:38.444 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:46:38.444 -07 000000610 INF: =================== Cycle #104, Pumping Reagent IMT (1) ===================
17-03-18 02:46:38.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:38.604 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:46:38.604 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:46:38.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:38.764 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:46:38.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:46:38.764 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:46:38.894 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:46:38.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:39.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:39.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:39.384 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:46:39.384 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:46:39.664 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.99219,
17-03-18 02:46:40.604 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:46:40.604 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:46:40.604 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:40.624 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:46:40.624 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:46:40.624 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:46:40.854 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:46:40.874 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:46:40.874 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:46:40.924 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:46:40.944 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:46:40.944 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:46:41.044 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:46:41.044 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:46:41.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:41.084 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:46:41.084 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:46:41.084 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:46:41.214 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:46:41.254 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:46:41.514 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:46:41.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:46:42.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:42.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:42.154 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:46:42.154 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:46:42.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:42.314 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:46:42.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:46:42.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:46:42.474 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:46:42.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:46:42.474 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:46:42.604 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:46:42.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:43.064 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:46:43.094 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:46:43.094 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:46:43.094 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:46:43.094 -07 000000610 INF: =================== Cycle #104, Flow Cell Temp 65° ===================
17-03-18 02:46:43.094 -07 000000610 INF: =================== Cycle #104, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:46:43.094 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:46:43.094 -07 000000629 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:46:43.104 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:46:43.104 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:46:43.104 -07 000000591 INF: FPGA: Recv TEC2EN 
17-03-18 02:46:43.114 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:46:43.114 -07 000000610 INF: =================== Cycle #104, Flow Cell Temp 65° ===================
17-03-18 02:46:43.114 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:46:43.114 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:46:45.024 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.975845,
17-03-18 02:46:46.514 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:46:46.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:46:50.384 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.014009,
17-03-18 02:46:51.514 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:46:51.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:46:55.744 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.027603,
17-03-18 02:46:56.514 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:46:56.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:01.104 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.983999,
17-03-18 02:47:01.514 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:01.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:06.464 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.001704,
17-03-18 02:47:06.514 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:06.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:11.514 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:11.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:11.824 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.994908,
17-03-18 02:47:13.124 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:47:13.124 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:47:13.124 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:47:13.224 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:13.254 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:47:13.254 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:47:13.254 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:47:13.384 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:47:13.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:47:13.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:13.994 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:13.994 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 02:47:13.994 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:47:14.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:14.154 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:47:14.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:47:14.284 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:14.314 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:47:14.314 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:47:14.314 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:47:14.444 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:47:14.474 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:14.904 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:14.934 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:14.934 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:47:14.934 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:47:14.934 -07 000000579 INF: WaitCommand(30000) start
17-03-18 02:47:14.934 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:47:14.934 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:47:16.154 -07 000000626 INF: AsyncDelayTimer waited 1214ms
17-03-18 02:47:16.154 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-18 02:47:16.184 -07 000000626 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:47:16.184 -07 000000626 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:47:16.314 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:47:16.354 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:47:16.514 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:16.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:17.184 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.98264,
17-03-18 02:47:18.694 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:18.724 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:47:19.144 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:19.174 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:19.174 -07 000000626 INF: LanePump: Waited 2820 ms for pump motion to complete
17-03-18 02:47:19.174 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:47:19.174 -07 000000626 INF: ===================  ===================
17-03-18 02:47:21.514 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:21.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:22.544 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.98264,
17-03-18 02:47:26.514 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:26.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:27.904 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.975845,
17-03-18 02:47:31.514 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:31.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:33.264 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.02213,
17-03-18 02:47:36.514 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:36.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:38.624 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.99219,
17-03-18 02:47:41.514 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:41.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:43.984 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.005817,
17-03-18 02:47:44.944 -07 000000579 INF: WaitCommand(30000) end
17-03-18 02:47:44.944 -07 000000610 INF: =================== Cycle #104, Flow Cell Temp 22° ===================
17-03-18 02:47:44.944 -07 000000610 INF: =================== Cycle #104, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:47:44.944 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 02:47:44.954 -07 000000424 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:47:44.954 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:47:44.954 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:47:44.954 -07 000000430 INF: FPGA: Recv TEC2EN 
17-03-18 02:47:44.964 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:47:44.964 -07 000000610 INF: =================== Cycle #104, Flow Cell Temp 22° ===================
17-03-18 02:47:44.964 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:47:44.964 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:47:44.964 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:47:44.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:45.004 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:47:45.004 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:47:45.004 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:47:45.134 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:47:45.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:47:46.514 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:46.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1537, R2=1601, Total=3138. Warn if over 250 bubbles per interval.
17-03-18 02:47:48.304 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:48.334 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:47:48.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:48.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:47:49.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:49.234 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:49.234 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:47:49.234 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:47:49.344 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.033041,
17-03-18 02:47:49.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:49.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:47:49.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:47:49.524 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:49.554 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:47:49.554 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:47:49.554 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:47:49.684 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:47:49.714 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:50.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:50.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:50.174 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:47:50.174 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:47:51.394 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:47:51.394 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:47:51.394 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:47:51.414 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:47:51.414 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:47:51.414 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:47:51.514 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 02:47:51.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:47:51.564 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:47:51.584 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:47:51.584 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:47:51.634 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:47:51.654 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:47:51.654 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:47:51.754 -07 000000610 INF: =================== Cycle #104, Pumping Reagent USM (2) ===================
17-03-18 02:47:51.754 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:47:51.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:51.784 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:47:51.784 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:47:51.784 -07 000000610 INF: =================== Cycle #104, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:47:51.914 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:47:51.954 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:47:53.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:53.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:47:53.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:53.874 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:53.874 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:47:53.874 -07 000000610 INF: =================== Cycle #104, Pumping Reagent USM (2) ===================
17-03-18 02:47:54.004 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:54.034 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:47:54.034 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:47:54.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:54.194 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:47:54.194 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:47:54.194 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:47:54.324 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:47:54.354 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:54.704 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.024884,
17-03-18 02:47:54.784 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:54.814 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:54.814 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:47:54.814 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:47:56.034 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 02:47:56.034 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:47:56.034 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:47:56.054 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:47:56.054 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:47:56.054 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:47:56.204 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:47:56.224 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:47:56.224 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:47:56.274 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:47:56.294 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:47:56.294 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:47:56.394 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:47:56.394 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:47:56.394 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:56.424 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:47:56.424 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:47:56.424 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:47:56.514 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:47:56.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:47:56.554 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:47:56.594 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:47:57.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:57.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:57.494 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:47:57.494 -07 000000610 INF: =================== Cycle #104, Pumping Reagent PR2 (3) ===================
17-03-18 02:47:57.624 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:57.654 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:47:57.654 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:47:57.784 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:47:57.814 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:47:57.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:47:57.814 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:47:57.944 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:47:57.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:58.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:47:58.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:47:58.434 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:47:58.434 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:47:58.434 -07 000000462 INF: WaitCommand(10000) start
17-03-18 02:47:58.434 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:47:58.434 -07 000000590 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:47:59.654 -07 000000590 INF: AsyncDelayTimer waited 1214ms
17-03-18 02:47:59.654 -07 000000590 INF: LanePump: Xmit /1?\r
17-03-18 02:47:59.684 -07 000000590 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:47:59.684 -07 000000590 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:47:59.814 -07 000000590 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:47:59.854 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:48:00.064 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.001704,
17-03-18 02:48:01.384 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 02:48:01.414 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:48:01.514 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:01.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:01.834 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 02:48:01.864 -07 000000590 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:48:01.864 -07 000000590 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:48:01.864 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:48:01.864 -07 000000590 INF: ===================  ===================
17-03-18 02:48:05.424 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.001704,
17-03-18 02:48:06.514 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:06.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:08.444 -07 000000462 INF: WaitCommand(10000) end
17-03-18 02:48:08.444 -07 000000610 INF: =================== Cycle #104, Imaging ===================
17-03-18 02:48:08.444 -07 000000610 INF: Imaging Cycle 104: ScanTilesCommand Cycle 104 time start.
17-03-18 02:48:08.444 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:48:08.444 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:48:08.474 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:48:08.474 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:48:08.474 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:48:08.774 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:48:08.794 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:48:08.794 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:48:08.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:48:08.864 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:48:08.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:08.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:08.864 -07 000000579 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:48:08.864 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:08.864 -07 000000579 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:48:08.874 -07 000000569 INF: FPGA: Recv EXLED1ON 
17-03-18 02:48:08.874 -07 000000579 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:48:08.874 -07 000000579 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:48:08.874 -07 000000606 INF: FPGA: Recv EXLED1ADCR 23153
17-03-18 02:48:08.884 -07 000000579 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:08.884 -07 000000579 INF: RedLED: Using Red data: Photodiode ADC 23153 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-18 02:48:08.884 -07 000000579 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:48:08.884 -07 000000590 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:48:08.894 -07 000000579 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:48:08.894 -07 000000579 INF: RedLED: LED was on for 19 ms
17-03-18 02:48:08.894 -07 000000579 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-18 02:48:08.894 -07 000000579 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:48:08.894 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:08.894 -07 000000579 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:48:08.894 -07 000000618 INF: FPGA: Recv EXLED2ON 
17-03-18 02:48:08.904 -07 000000579 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:08.904 -07 000000579 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:48:08.904 -07 000000606 INF: FPGA: Recv EXLED1ADCR 2099
17-03-18 02:48:08.914 -07 000000579 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:08.914 -07 000000579 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-18 02:48:08.914 -07 000000579 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:48:08.914 -07 000000512 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:48:08.924 -07 000000579 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:08.924 -07 000000579 INF: GreenLED: LED was on for 19 ms
17-03-18 02:48:08.924 -07 000000579 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 02:48:08.924 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:48:08.924 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-18 02:48:08.934 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:08.934 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:48:09.434 -07 000000626 INF: FPGA: Recv EMOUT
17-03-18 02:48:09.434 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 496 ms to get response, and 505 ms overall
17-03-18 02:48:09.434 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:48:09.434 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-18 02:48:09.444 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:48:09.444 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:09.444 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126606231485777. ------
17-03-18 02:48:09.444 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:09.444 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17855 mm
17-03-18 02:48:09.444 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:09.444 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:48:09.444 -07 000000455 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 02:48:09.444 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 39004, sync = True, waitForSettling = False)
17-03-18 02:48:09.454 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:09.454 -07 000000424 INF: Z Motor: Moving to -0.178549 mm, started at -0.126606 mm, distance = -51.94 um
17-03-18 02:48:09.454 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:09.454 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:48:09.454 -07 000000591 INF: FPGA: Recv YRDPOS 154387
17-03-18 02:48:09.464 -07 000000424 INF: FPGA: Xmit ZDACW 39004\n [Z Motor]
17-03-18 02:48:09.464 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:09.464 -07 000000455 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:09.464 -07 000000455 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:48:09.464 -07 000000455 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:48:09.464 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:48:09.474 -07 000000424 INF: FPGA: 'ZDACW 39004' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:48:09.474 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:09.484 -07 000000455 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:48:09.494 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:09.494 -07 000000579 INF: FPGA: Recv ZDACR 39004
17-03-18 02:48:09.504 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:48:09.504 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:48:09.674 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:09.674 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:48:10.784 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.997626,
17-03-18 02:48:11.164 -07 000000430 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 02:48:11.164 -07 000000455 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-18 02:48:11.164 -07 000000455 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:48:11.164 -07 000000455 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 02:48:11.164 -07 000000455 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.472 mm, average velocity = 9.074 mm/sec
17-03-18 02:48:11.514 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:11.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:14.014 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:14.014 -07 000000430 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:48:14.024 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:14.024 -07 000000455 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:14.044 -07 000000455 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:14.044 -07 000000455 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 02:48:14.044 -07 000000455 INF: Y Motor: Moved to 59.9102 after 4599 ms
17-03-18 02:48:14.054 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178549 mm (DAC = 39004)
17-03-18 02:48:14.054 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.054 -07 000000501 INF: FPGA: Recv ZSGSRD 37090
17-03-18 02:48:14.064 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:14.064 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.064 -07 000000591 INF: FPGA: Recv ZSGSRD 37079
17-03-18 02:48:14.074 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.074 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.074 -07 000000430 INF: FPGA: Recv ZSGSRD 37078
17-03-18 02:48:14.084 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.084 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.084 -07 000000579 INF: FPGA: Recv ZSGSRD 37082
17-03-18 02:48:14.094 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.094 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.094 -07 000000462 INF: FPGA: Recv ZSGSRD 37081
17-03-18 02:48:14.104 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.104 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.104 -07 000000455 INF: FPGA: Recv ZSGSRD 37089
17-03-18 02:48:14.114 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.114 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.114 -07 000000629 INF: FPGA: Recv ZSGSRD 37081
17-03-18 02:48:14.124 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.124 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.124 -07 000000430 INF: FPGA: Recv ZSGSRD 37082
17-03-18 02:48:14.134 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.134 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.134 -07 000000579 INF: FPGA: Recv ZSGSRD 37093
17-03-18 02:48:14.144 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.144 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:14.144 -07 000000462 INF: FPGA: Recv ZSGSRD 37075
17-03-18 02:48:14.154 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.154 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:14.154 -07 000000444 INF: FPGA: Recv ZPIEZORD 33339
17-03-18 02:48:14.164 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.164 -07 000000618 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.952 V. Piezo Error = -8.3 V.
17-03-18 02:48:14.164 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37083 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37082 (-177.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37075 (-177.6 uncal um), Max = 37093 (-177.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:48:14.164 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37083, posNoise = 10, negNoise = 8
17-03-18 02:48:14.164 -07 000000618 INF: Z Motor: After move to -0.178549, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:14.164 -07 000000618 INF: Z Motor: Settle wait time = 4602 ms, measure time = 108 ms (allowed 150 ms), total time = 4710 ms
17-03-18 02:48:14.164 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:14.214 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-18 02:48:14.214 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:14.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:14.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:14.214 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:14.214 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:14.214 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:14.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:14.214 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:14.214 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:48:14.244 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 02:48:14.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:14.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:48:14.244 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:14.264 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:48:14.264 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-18 02:48:14.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:14.304 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:14.604 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:14.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:14.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:14.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:48:14.654 -07 000000502 INF: FPGA: Recv @CAMSNAP 383
17-03-18 02:48:14.654 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:14.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 387 ms overall
17-03-18 02:48:14.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:48:14.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:14.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:14.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:48:14.754 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:14.754 -07 000000569 INF: Image SNR check: start
17-03-18 02:48:14.754 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:14.764 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:48:14.764 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:14.774 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=137.29]
17-03-18 02:48:14.774 -07 000000569 INF: Autofocus start
17-03-18 02:48:14.774 -07 000000569 INF: MeasureProfile start
17-03-18 02:48:14.784 -07 000000569 INF: MeasureProfile done
17-03-18 02:48:14.784 -07 000000569 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:48:14.784 -07 000000569 INF: Autofocus finished
17-03-18 02:48:14.964 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:14.964 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:14.964 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178552410864057. ----------
17-03-18 02:48:14.964 -07 000000610 INF: Cycle	104	Tile	1	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:14.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37519, sync = True, waitForSettling = True)
17-03-18 02:48:14.974 -07 000000610 INF: Z Motor: Moving to -0.171751 mm, started at -0.178552 mm, distance = 6.80 um
17-03-18 02:48:14.974 -07 000000610 INF: FPGA: Xmit ZDACW 37519\n [Z Motor]
17-03-18 02:48:14.974 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:48:14.984 -07 000000610 INF: FPGA: 'ZDACW 37519' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:48:14.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:14.984 -07 000000455 INF: FPGA: Recv ZDACR 37519
17-03-18 02:48:14.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:14.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:15.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.144 -07 000000424 INF: FPGA: Recv ZSGSRD 36027
17-03-18 02:48:15.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:15.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.154 -07 000000467 INF: FPGA: Recv ZSGSRD 36027
17-03-18 02:48:15.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:15.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.164 -07 000000606 INF: FPGA: Recv ZSGSRD 36024
17-03-18 02:48:15.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:15.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.174 -07 000000430 INF: FPGA: Recv ZSGSRD 36028
17-03-18 02:48:15.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:15.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.184 -07 000000461 INF: FPGA: Recv ZSGSRD 36026
17-03-18 02:48:15.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:15.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.194 -07 000000424 INF: FPGA: Recv ZSGSRD 36028
17-03-18 02:48:15.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:15.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.204 -07 000000576 INF: FPGA: Recv ZSGSRD 36027
17-03-18 02:48:15.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:15.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.214 -07 000000444 INF: FPGA: Recv ZSGSRD 36026
17-03-18 02:48:15.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:15.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.224 -07 000000462 INF: FPGA: Recv ZSGSRD 36026
17-03-18 02:48:15.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:15.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:15.244 -07 000000461 INF: FPGA: Recv ZSGSRD 36029
17-03-18 02:48:15.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:48:15.254 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:15.254 -07 000000606 INF: FPGA: Recv ZPIEZORD 31880
17-03-18 02:48:15.264 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:15.264 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.725 V. Piezo Error = -9.1 V.
17-03-18 02:48:15.264 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36027 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36027 (-170.9 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36024 (-170.9 uncal um), Max = 36029 (-170.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:48:15.264 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36027, posNoise = 2, negNoise = 3
17-03-18 02:48:15.264 -07 000000610 INF: Z Motor: After move to -0.171751, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:15.264 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 02:48:15.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:15.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:15.264 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:15.264 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:15.264 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:15.264 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:15.264 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:15.264 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:15.264 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:48:15.264 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:48:15.264 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:15.264 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:15.274 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:15.274 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:15.284 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:48:15.284 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:48:15.294 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 02:48:15.294 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:15.294 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:48:15.294 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:15.304 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:48:15.304 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-18 02:48:15.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37696 150\n [Camera]
17-03-18 02:48:15.504 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:48:15.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:48:15.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:48:15.904 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:15.904 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:48:15.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:48:15.904 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:15.904 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:15.904 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-18 02:48:15.904 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:15.904 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:48:16.094 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37696 783
17-03-18 02:48:16.144 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.015368,
17-03-18 02:48:16.244 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:16.304 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:48:16.304 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:48:16.304 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:16.304 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:48:16.304 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:48:16.304 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:16.314 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:48:16.314 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:48:16.314 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:48:16.324 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:48:16.444 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:48:16.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:48:16.444 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:16.554 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:48:16.554 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:16.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:48:16.554 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:16.554 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:16.554 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:16.554 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:48:16.564 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:16.564 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:48:16.624 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:48:16.634 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:16.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37696 150' command took 2 ms to send, 1320 ms to get response, and 1323 ms overall
17-03-18 02:48:16.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:16.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171768442842357. ------
17-03-18 02:48:16.634 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:16.634 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17807 mm
17-03-18 02:48:16.634 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:16.644 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:48:16.644 -07 000000455 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 02:48:16.644 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38899, sync = True, waitForSettling = False)
17-03-18 02:48:16.644 -07 000000626 INF: Z Motor: Moving to -0.178068 mm, started at -0.171768 mm, distance = -6.30 um
17-03-18 02:48:16.644 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:16.644 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-18 02:48:16.644 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:16.644 -07 000000606 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:48:16.654 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:16.654 -07 000000455 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:16.654 -07 000000455 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:16.654 -07 000000455 INF: Y Motor: Moving 1332 steps2
17-03-18 02:48:16.654 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:16.664 -07 000000626 INF: FPGA: Xmit ZDACW 38899\n [Z Motor]
17-03-18 02:48:16.664 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:48:16.674 -07 000000626 INF: FPGA: 'ZDACW 38899' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:48:16.674 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:16.684 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:16.684 -07 000000561 INF: FPGA: Recv ZDACR 38899
17-03-18 02:48:16.694 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:48:16.694 -07 000000626 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:48:16.854 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:16.854 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 02:48:16.954 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:48:16.954 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:48:16.954 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:16.954 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:48:16.954 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:48:16.954 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:16.954 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:16.964 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:16.964 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 02:48:16.964 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:48:17.054 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:48:17.054 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 02:48:17.084 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:17.094 -07 000000467 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:48:17.094 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:48:17.094 -07 000000455 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:17.094 -07 000000455 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:48:17.094 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.832 mm, average velocity = 2.081 mm/sec
17-03-18 02:48:18.044 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:18.044 -07 000000430 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:48:18.054 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:18.054 -07 000000455 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:18.074 -07 000000455 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:18.084 -07 000000455 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:48:18.084 -07 000000455 INF: Y Motor: Moved to 60.7324 after 1439 ms (table move)
17-03-18 02:48:18.084 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178068 mm (DAC = 38899)
17-03-18 02:48:18.084 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.084 -07 000000629 INF: FPGA: Recv ZSGSRD 37015
17-03-18 02:48:18.094 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:18.094 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.094 -07 000000569 INF: FPGA: Recv ZSGSRD 37007
17-03-18 02:48:18.104 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.104 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.104 -07 000000501 INF: FPGA: Recv ZSGSRD 37008
17-03-18 02:48:18.114 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.114 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.114 -07 000000467 INF: FPGA: Recv ZSGSRD 37016
17-03-18 02:48:18.124 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.124 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.124 -07 000000461 INF: FPGA: Recv ZSGSRD 37010
17-03-18 02:48:18.134 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.134 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.134 -07 000000455 INF: FPGA: Recv ZSGSRD 37014
17-03-18 02:48:18.144 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:18.144 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.144 -07 000000569 INF: FPGA: Recv ZSGSRD 37005
17-03-18 02:48:18.154 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.154 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.154 -07 000000501 INF: FPGA: Recv ZSGSRD 37002
17-03-18 02:48:18.164 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.164 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.164 -07 000000591 INF: FPGA: Recv ZSGSRD 37008
17-03-18 02:48:18.174 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.174 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:18.174 -07 000000626 INF: FPGA: Recv ZSGSRD 37008
17-03-18 02:48:18.184 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.184 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:18.184 -07 000000606 INF: FPGA: Recv ZPIEZORD 33249
17-03-18 02:48:18.194 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.194 -07 000000590 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.936 V. Piezo Error = -8.3 V.
17-03-18 02:48:18.194 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37009 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37008 (-177.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37002 (-177.1 uncal um), Max = 37016 (-177.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:48:18.194 -07 000000590 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37009, posNoise = 7, negNoise = 7
17-03-18 02:48:18.194 -07 000000590 INF: Z Motor: After move to -0.178068, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:18.194 -07 000000590 INF: Z Motor: Settle wait time = 1442 ms, measure time = 108 ms (allowed 150 ms), total time = 1550 ms
17-03-18 02:48:18.194 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:18.244 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 02:48:18.244 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:18.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:18.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:18.244 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:18.244 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:18.244 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:18.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:18.254 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:18.254 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:18.254 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:18.254 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:18.264 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:48:18.264 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 02:48:18.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:18.314 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:18.614 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:18.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:18.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:18.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 02:48:18.654 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:18.654 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:18.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 02:48:18.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:48:18.744 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:18.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:18.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:48:18.754 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:18.754 -07 000000629 INF: Autofocus start
17-03-18 02:48:18.754 -07 000000629 INF: MeasureProfile start
17-03-18 02:48:18.754 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:18.764 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:48:18.764 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:18.764 -07 000000629 INF: MeasureProfile done
17-03-18 02:48:18.764 -07 000000629 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:48:18.764 -07 000000629 INF: Autofocus finished
17-03-18 02:48:18.964 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:18.964 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:18.964 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178077019165566. ----------
17-03-18 02:48:18.964 -07 000000610 INF: Cycle	104	Tile	2	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:18.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37396, sync = True, waitForSettling = True)
17-03-18 02:48:18.974 -07 000000610 INF: Z Motor: Moving to -0.171188 mm, started at -0.178077 mm, distance = 6.89 um
17-03-18 02:48:18.974 -07 000000610 INF: FPGA: Xmit ZDACW 37396\n [Z Motor]
17-03-18 02:48:18.974 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:48:18.984 -07 000000610 INF: FPGA: 'ZDACW 37396' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:48:18.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:18.984 -07 000000606 INF: FPGA: Recv ZDACR 37396
17-03-18 02:48:18.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:18.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.144 -07 000000424 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:48:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.154 -07 000000561 INF: FPGA: Recv ZSGSRD 35940
17-03-18 02:48:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.164 -07 000000576 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:48:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.174 -07 000000512 INF: FPGA: Recv ZSGSRD 35939
17-03-18 02:48:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.184 -07 000000626 INF: FPGA: Recv ZSGSRD 35940
17-03-18 02:48:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.194 -07 000000455 INF: FPGA: Recv ZSGSRD 35942
17-03-18 02:48:19.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.204 -07 000000618 INF: FPGA: Recv ZSGSRD 35935
17-03-18 02:48:19.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.214 -07 000000590 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:48:19.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.224 -07 000000591 INF: FPGA: Recv ZSGSRD 35936
17-03-18 02:48:19.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:19.234 -07 000000579 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:48:19.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:19.244 -07 000000455 INF: FPGA: Recv ZPIEZORD 31802
17-03-18 02:48:19.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:19.254 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.1 V.
17-03-18 02:48:19.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35938 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35938 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35934 (-170.3 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:48:19.254 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35938, posNoise = 4, negNoise = 4
17-03-18 02:48:19.254 -07 000000610 INF: Z Motor: After move to -0.171188, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:19.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:48:19.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:19.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:19.254 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:19.254 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:19.254 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:19.254 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:19.254 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:19.254 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:19.254 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:48:19.254 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:19.254 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:19.254 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:19.264 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:48:19.264 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:19.264 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:19.264 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:19.274 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:48:19.274 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:48:19.274 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:48:19.274 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:48:19.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37573 150\n [Camera]
17-03-18 02:48:19.474 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:48:19.874 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:48:19.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:48:19.874 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:19.874 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:19.874 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:48:19.884 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:48:19.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:48:19.884 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:19.884 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:19.884 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:48:20.074 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37573 783
17-03-18 02:48:20.214 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:20.264 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:48:20.264 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:48:20.264 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:20.274 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 02:48:20.274 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:48:20.274 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:20.274 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:20.274 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:20.274 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:48:20.274 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:48:20.414 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:48:20.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:48:20.414 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:20.414 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:20.414 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:48:20.414 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:48:20.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:48:20.414 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:20.414 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:20.414 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:48:20.604 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:48:20.604 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:20.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37573 150' command took 2 ms to send, 1313 ms to get response, and 1323 ms overall
17-03-18 02:48:20.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:20.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.17119668796174. ------
17-03-18 02:48:20.604 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:20.604 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17792 mm
17-03-18 02:48:20.604 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:20.724 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:20.724 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-18 02:48:20.724 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:20.724 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38867, sync = True, waitForSettling = False)
17-03-18 02:48:20.724 -07 000000590 INF: Z Motor: Moving to -0.177922 mm, started at -0.171197 mm, distance = -6.73 um
17-03-18 02:48:20.724 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:48:20.724 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:48:20.734 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:20.734 -07 000000626 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:48:20.744 -07 000000590 INF: FPGA: Xmit ZDACW 38867\n [Z Motor]
17-03-18 02:48:20.744 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:48:20.744 -07 000000576 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:20.744 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:20.744 -07 000000576 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:48:20.744 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:48:20.754 -07 000000590 INF: FPGA: 'ZDACW 38867' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:48:20.754 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:20.754 -07 000000512 INF: FPGA: Recv ZDACR 38867
17-03-18 02:48:20.764 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:20.764 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:20.764 -07 000000590 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:48:20.804 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:48:20.804 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:48:20.804 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:20.814 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:48:20.814 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:48:20.814 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:20.814 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:20.814 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:48:20.814 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:48:20.824 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:48:20.924 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:20.924 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:48:21.144 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:48:21.144 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 02:48:21.194 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:21.194 -07 000000462 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:48:21.204 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:48:21.204 -07 000000576 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:21.204 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:48:21.204 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.840 mm, average velocity = 2.095 mm/sec
17-03-18 02:48:21.504 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.990831,
17-03-18 02:48:21.514 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:21.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:22.154 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:22.154 -07 000000444 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:48:22.164 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:22.164 -07 000000576 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:22.184 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:22.184 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:48:22.184 -07 000000576 INF: Y Motor: Moved to 61.5635 after 1465 ms (table move)
17-03-18 02:48:22.194 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177922 mm (DAC = 38867)
17-03-18 02:48:22.194 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.194 -07 000000561 INF: FPGA: Recv ZSGSRD 36985
17-03-18 02:48:22.204 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:48:22.204 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.204 -07 000000626 INF: FPGA: Recv ZSGSRD 36990
17-03-18 02:48:22.214 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.214 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.214 -07 000000455 INF: FPGA: Recv ZSGSRD 36990
17-03-18 02:48:22.224 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.224 -07 000000467 INF: FPGA: Recv ZSGSRD 36991
17-03-18 02:48:22.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.234 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.234 -07 000000618 INF: FPGA: Recv ZSGSRD 36991
17-03-18 02:48:22.244 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.244 -07 000000576 INF: FPGA: Recv ZSGSRD 36984
17-03-18 02:48:22.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.254 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.254 -07 000000626 INF: FPGA: Recv ZSGSRD 36983
17-03-18 02:48:22.264 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.264 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.264 -07 000000455 INF: FPGA: Recv ZSGSRD 36980
17-03-18 02:48:22.274 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.274 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.274 -07 000000467 INF: FPGA: Recv ZSGSRD 36985
17-03-18 02:48:22.284 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.284 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:22.284 -07 000000618 INF: FPGA: Recv ZSGSRD 36989
17-03-18 02:48:22.294 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.294 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:22.294 -07 000000576 INF: FPGA: Recv ZPIEZORD 33213
17-03-18 02:48:22.304 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:22.304 -07 000000501 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.4 V.
17-03-18 02:48:22.304 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36987 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36987 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36980 (-177.0 uncal um), Max = 36991 (-177.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:48:22.304 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36987, posNoise = 4, negNoise = 7
17-03-18 02:48:22.304 -07 000000501 INF: Z Motor: After move to -0.177922, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:22.304 -07 000000501 INF: Z Motor: Settle wait time = 1469 ms, measure time = 109 ms (allowed 150 ms), total time = 1578 ms
17-03-18 02:48:22.304 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:22.354 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1741 ms
17-03-18 02:48:22.354 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:22.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:22.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:22.354 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:22.354 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:22.354 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:22.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:22.354 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:22.354 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:22.364 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:22.364 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:22.364 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:48:22.364 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:48:22.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:22.414 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:22.714 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:22.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:22.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:22.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:48:22.754 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:22.754 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:22.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:48:22.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:48:22.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:22.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:22.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:48:22.854 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:22.854 -07 000000501 INF: Autofocus start
17-03-18 02:48:22.854 -07 000000501 INF: MeasureProfile start
17-03-18 02:48:22.854 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:22.864 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:48:22.864 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:22.864 -07 000000501 INF: MeasureProfile done
17-03-18 02:48:22.864 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:48:22.864 -07 000000501 INF: Autofocus finished
17-03-18 02:48:23.064 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:23.064 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:23.064 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.177935686498447. ----------
17-03-18 02:48:23.064 -07 000000610 INF: Cycle	104	Tile	3	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:23.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37364, sync = True, waitForSettling = True)
17-03-18 02:48:23.074 -07 000000610 INF: Z Motor: Moving to -0.171041 mm, started at -0.177936 mm, distance = 6.89 um
17-03-18 02:48:23.074 -07 000000610 INF: FPGA: Xmit ZDACW 37364\n [Z Motor]
17-03-18 02:48:23.074 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:48:23.084 -07 000000610 INF: FPGA: 'ZDACW 37364' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:23.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:23.084 -07 000000430 INF: FPGA: Recv ZDACR 37364
17-03-18 02:48:23.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:23.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35914
17-03-18 02:48:23.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:23.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.254 -07 000000561 INF: FPGA: Recv ZSGSRD 35920
17-03-18 02:48:23.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.264 -07 000000455 INF: FPGA: Recv ZSGSRD 35919
17-03-18 02:48:23.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.274 -07 000000512 INF: FPGA: Recv ZSGSRD 35909
17-03-18 02:48:23.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.284 -07 000000430 INF: FPGA: Recv ZSGSRD 35920
17-03-18 02:48:23.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.294 -07 000000618 INF: FPGA: Recv ZSGSRD 35911
17-03-18 02:48:23.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.304 -07 000000561 INF: FPGA: Recv ZSGSRD 35923
17-03-18 02:48:23.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.314 -07 000000467 INF: FPGA: Recv ZSGSRD 35909
17-03-18 02:48:23.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.324 -07 000000512 INF: FPGA: Recv ZSGSRD 35912
17-03-18 02:48:23.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:23.334 -07 000000502 INF: FPGA: Recv ZSGSRD 35926
17-03-18 02:48:23.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:23.344 -07 000000461 INF: FPGA: Recv ZPIEZORD 31758
17-03-18 02:48:23.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:23.354 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.2 V.
17-03-18 02:48:23.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35909 (-170.1 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:48:23.354 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 10, negNoise = 7
17-03-18 02:48:23.354 -07 000000610 INF: Z Motor: After move to -0.171041, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:23.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:48:23.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:23.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:23.354 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:23.354 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:23.354 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:23.354 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:23.354 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:23.354 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:23.354 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:23.354 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:23.354 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:48:23.354 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:23.364 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:23.364 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:48:23.364 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:23.364 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:23.374 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:48:23.374 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:48:23.374 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:48:23.374 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:48:23.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37541 150\n [Camera]
17-03-18 02:48:23.574 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:48:23.974 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:48:23.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:48:23.974 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:23.974 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:48:23.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:48:23.974 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:23.974 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:23.974 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:48:23.984 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:23.984 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:48:24.164 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37541 783
17-03-18 02:48:24.314 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:24.364 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:48:24.364 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:48:24.364 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:24.364 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:24.364 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:48:24.364 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:48:24.364 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:48:24.364 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:24.374 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:24.374 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:48:24.504 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:48:24.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:48:24.504 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:24.514 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:48:24.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:48:24.514 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:24.514 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:24.514 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 02:48:24.514 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:24.514 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:48:24.694 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:48:24.694 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:24.694 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37541 150' command took 2 ms to send, 1319 ms to get response, and 1324 ms overall
17-03-18 02:48:24.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:24.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171055355294621. ------
17-03-18 02:48:24.704 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:24.704 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17729 mm
17-03-18 02:48:24.704 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:24.704 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:48:24.704 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 02:48:24.704 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:24.714 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:48:24.714 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 38728, sync = True, waitForSettling = False)
17-03-18 02:48:24.714 -07 000000430 INF: Z Motor: Moving to -0.177285 mm, started at -0.171055 mm, distance = -6.23 um
17-03-18 02:48:24.714 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:24.714 -07 000000590 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:48:24.724 -07 000000430 INF: FPGA: Xmit ZDACW 38728\n [Z Motor]
17-03-18 02:48:24.724 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:24.724 -07 000000462 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:24.724 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:24.724 -07 000000462 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:48:24.724 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:48:24.734 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:24.734 -07 000000430 INF: FPGA: 'ZDACW 38728' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:48:24.744 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:24.754 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:24.754 -07 000000455 INF: FPGA: Recv ZDACR 38728
17-03-18 02:48:24.764 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:48:24.764 -07 000000430 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:48:24.914 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:48:24.914 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:48:24.914 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:24.914 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:48:24.914 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:48:24.914 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:24.914 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:24.914 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:48:24.914 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:24.924 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:48:24.934 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:24.934 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:48:25.114 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:48:25.114 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:48:25.164 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:25.164 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:48:25.174 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:48:25.174 -07 000000462 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:25.174 -07 000000462 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:48:25.174 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 02:48:26.124 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:26.124 -07 000000606 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:48:26.134 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.134 -07 000000462 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:26.154 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:26.154 -07 000000462 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:48:26.154 -07 000000462 INF: Y Motor: Moved to 62.3950 after 1451 ms (table move)
17-03-18 02:48:26.164 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177285 mm (DAC = 38728)
17-03-18 02:48:26.164 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.164 -07 000000501 INF: FPGA: Recv ZSGSRD 36887
17-03-18 02:48:26.174 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:48:26.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.174 -07 000000569 INF: FPGA: Recv ZSGSRD 36893
17-03-18 02:48:26.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.184 -07 000000444 INF: FPGA: Recv ZSGSRD 36891
17-03-18 02:48:26.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.194 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.194 -07 000000618 INF: FPGA: Recv ZSGSRD 36888
17-03-18 02:48:26.204 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.204 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.204 -07 000000561 INF: FPGA: Recv ZSGSRD 36886
17-03-18 02:48:26.214 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.214 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.214 -07 000000512 INF: FPGA: Recv ZSGSRD 36885
17-03-18 02:48:26.224 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.224 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.224 -07 000000461 INF: FPGA: Recv ZSGSRD 36885
17-03-18 02:48:26.234 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.234 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.234 -07 000000444 INF: FPGA: Recv ZSGSRD 36879
17-03-18 02:48:26.244 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.244 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.244 -07 000000618 INF: FPGA: Recv ZSGSRD 36892
17-03-18 02:48:26.254 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.254 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:26.254 -07 000000629 INF: FPGA: Recv ZSGSRD 36884
17-03-18 02:48:26.264 -07 000000591 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:26.274 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:26.274 -07 000000501 INF: FPGA: Recv ZPIEZORD 33087
17-03-18 02:48:26.284 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:48:26.284 -07 000000591 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.910 V. Piezo Error = -8.4 V.
17-03-18 02:48:26.284 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36887 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36886 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36879 (-176.3 uncal um), Max = 36893 (-176.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:48:26.284 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36887, posNoise = 6, negNoise = 8
17-03-18 02:48:26.284 -07 000000591 INF: Z Motor: After move to -0.177285, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:26.284 -07 000000591 INF: Z Motor: Settle wait time = 1451 ms, measure time = 119 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:48:26.284 -07 000000591 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:26.324 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:48:26.324 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:26.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:26.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:26.324 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:26.324 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:26.324 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:26.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:26.324 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:26.324 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:26.334 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:26.334 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:26.344 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:48:26.344 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 02:48:26.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:26.394 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:26.514 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:26.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:26.694 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:26.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:26.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:26.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) start.
17-03-18 02:48:26.734 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:26.734 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:26.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 386 ms overall
17-03-18 02:48:26.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406045800, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 02:48:26.824 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:26.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:26.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-18 02:48:26.834 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:26.834 -07 000000591 INF: Autofocus start
17-03-18 02:48:26.834 -07 000000591 INF: MeasureProfile start
17-03-18 02:48:26.834 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:26.844 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:26.844 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:26.844 -07 000000591 INF: MeasureProfile done
17-03-18 02:48:26.854 -07 000000591 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:48:26.854 -07 000000591 INF: Autofocus finished
17-03-18 02:48:26.864 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.997626,
17-03-18 02:48:27.044 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:27.044 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:27.044 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177293265284271. ----------
17-03-18 02:48:27.044 -07 000000610 INF: Cycle	104	Tile	4	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:27.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37261, sync = True, waitForSettling = True)
17-03-18 02:48:27.054 -07 000000610 INF: Z Motor: Moving to -0.170570 mm, started at -0.177293 mm, distance = 6.72 um
17-03-18 02:48:27.054 -07 000000610 INF: FPGA: Xmit ZDACW 37261\n [Z Motor]
17-03-18 02:48:27.054 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:48:27.064 -07 000000610 INF: FPGA: 'ZDACW 37261' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:27.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:27.064 -07 000000591 INF: FPGA: Recv ZDACR 37261
17-03-18 02:48:27.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.224 -07 000000455 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:48:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:27.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.234 -07 000000576 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:48:27.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.244 -07 000000430 INF: FPGA: Recv ZSGSRD 35837
17-03-18 02:48:27.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.254 -07 000000462 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:48:27.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.264 -07 000000590 INF: FPGA: Recv ZSGSRD 35838
17-03-18 02:48:27.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.274 -07 000000444 INF: FPGA: Recv ZSGSRD 35846
17-03-18 02:48:27.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.284 -07 000000626 INF: FPGA: Recv ZSGSRD 35842
17-03-18 02:48:27.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.294 -07 000000502 INF: FPGA: Recv ZSGSRD 35841
17-03-18 02:48:27.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.304 -07 000000512 INF: FPGA: Recv ZSGSRD 35845
17-03-18 02:48:27.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:27.314 -07 000000561 INF: FPGA: Recv ZSGSRD 35839
17-03-18 02:48:27.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:27.324 -07 000000444 INF: FPGA: Recv ZPIEZORD 31686
17-03-18 02:48:27.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:27.334 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.2 V.
17-03-18 02:48:27.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35842 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35842 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35837 (-169.7 uncal um), Max = 35846 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:48:27.334 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35842, posNoise = 4, negNoise = 5
17-03-18 02:48:27.334 -07 000000610 INF: Z Motor: After move to -0.170570, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:27.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:48:27.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:27.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:27.334 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:27.334 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:27.334 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:27.334 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:27.334 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:27.334 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:27.334 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:48:27.334 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:27.334 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:48:27.334 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:27.344 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:48:27.344 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:27.344 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:27.344 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:27.354 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:48:27.354 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:48:27.354 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:48:27.354 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:48:27.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37437 150\n [Camera]
17-03-18 02:48:27.554 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:48:27.954 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 02:48:27.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 02:48:27.954 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:27.954 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:27.954 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:48:27.954 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 02:48:27.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 02:48:27.954 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:27.954 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:27.954 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:48:28.144 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37437 783
17-03-18 02:48:28.294 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:28.334 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:48:28.334 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:48:28.334 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:28.334 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:48:28.334 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:48:28.334 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:28.334 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:28.344 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:28.344 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:48:28.344 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:48:28.484 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:48:28.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:48:28.484 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:28.484 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:28.484 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:48:28.484 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:48:28.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:48:28.484 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:28.494 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:28.494 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:48:28.674 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:48:28.674 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:28.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37437 150' command took 2 ms to send, 1318 ms to get response, and 1323 ms overall
17-03-18 02:48:28.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:28.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170579963596131. ------
17-03-18 02:48:28.684 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:28.684 -07 000000579 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17713 mm
17-03-18 02:48:28.684 -07 000000579 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:28.684 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:28.684 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:48:28.684 -07 000000512 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:48:28.684 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38693, sync = True, waitForSettling = False)
17-03-18 02:48:28.684 -07 000000591 INF: Z Motor: Moving to -0.177125 mm, started at -0.170580 mm, distance = -6.55 um
17-03-18 02:48:28.804 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:28.804 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 02:48:28.804 -07 000000462 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:48:28.814 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 02:48:28.814 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:28.814 -07 000000512 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:28.814 -07 000000512 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:48:28.814 -07 000000591 INF: FPGA: Xmit ZDACW 38693\n [Z Motor]
17-03-18 02:48:28.814 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:48:28.824 -07 000000591 INF: FPGA: 'ZDACW 38693' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:48:28.824 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:28.834 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:28.844 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:28.844 -07 000000424 INF: FPGA: Recv ZDACR 38693
17-03-18 02:48:28.854 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:48:28.854 -07 000000591 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-18 02:48:28.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:48:28.884 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:48:28.884 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:28.884 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:48:28.884 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:48:28.884 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:28.884 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:48:28.894 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-18 02:48:28.894 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:48:28.894 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:48:29.024 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:29.024 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 216 ms overall
17-03-18 02:48:29.204 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:48:29.204 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:48:29.254 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:29.254 -07 000000424 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:48:29.264 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:48:29.264 -07 000000512 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:29.264 -07 000000512 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:48:29.264 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 02:48:30.214 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:30.214 -07 000000502 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:48:30.224 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:30.224 -07 000000512 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:30.244 -07 000000512 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:30.244 -07 000000512 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:48:30.244 -07 000000512 INF: Y Motor: Moved to 63.2231 after 1561 ms (table move)
17-03-18 02:48:30.254 -07 000000579 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177125 mm (DAC = 38693)
17-03-18 02:48:30.254 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.254 -07 000000606 INF: FPGA: Recv ZSGSRD 36862
17-03-18 02:48:30.264 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:48:30.264 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.264 -07 000000569 INF: FPGA: Recv ZSGSRD 36863
17-03-18 02:48:30.274 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.274 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.274 -07 000000430 INF: FPGA: Recv ZSGSRD 36870
17-03-18 02:48:30.284 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.284 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.284 -07 000000461 INF: FPGA: Recv ZSGSRD 36864
17-03-18 02:48:30.294 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.294 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.294 -07 000000591 INF: FPGA: Recv ZSGSRD 36863
17-03-18 02:48:30.304 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.304 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.304 -07 000000455 INF: FPGA: Recv ZSGSRD 36860
17-03-18 02:48:30.314 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.314 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.314 -07 000000561 INF: FPGA: Recv ZSGSRD 36856
17-03-18 02:48:30.324 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.324 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.324 -07 000000444 INF: FPGA: Recv ZSGSRD 36866
17-03-18 02:48:30.334 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.334 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.334 -07 000000618 INF: FPGA: Recv ZSGSRD 36868
17-03-18 02:48:30.344 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.344 -07 000000579 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:30.344 -07 000000569 INF: FPGA: Recv ZSGSRD 36861
17-03-18 02:48:30.354 -07 000000579 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.354 -07 000000579 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:30.354 -07 000000455 INF: FPGA: Recv ZPIEZORD 33064
17-03-18 02:48:30.364 -07 000000579 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:30.364 -07 000000579 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.4 V.
17-03-18 02:48:30.364 -07 000000579 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36863 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36863 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36856 (-176.2 uncal um), Max = 36870 (-176.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:48:30.364 -07 000000579 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36863, posNoise = 7, negNoise = 7
17-03-18 02:48:30.364 -07 000000579 INF: Z Motor: After move to -0.177125, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:30.364 -07 000000579 INF: Z Motor: Settle wait time = 1446 ms, measure time = 109 ms (allowed 150 ms), total time = 1555 ms
17-03-18 02:48:30.364 -07 000000579 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:30.414 -07 000000579 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-18 02:48:30.414 -07 000000579 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:30.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:30.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:30.414 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:30.414 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:30.414 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:30.414 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:30.414 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:48:30.414 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:30.424 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:30.424 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:30.434 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:48:30.434 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:48:30.434 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:30.484 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:30.784 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:30.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:30.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:30.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:48:30.824 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:30.824 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:30.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 388 ms overall
17-03-18 02:48:30.904 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:48:30.904 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:30.904 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:30.904 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:48:30.924 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:30.924 -07 000000579 INF: Autofocus start
17-03-18 02:48:30.924 -07 000000579 INF: MeasureProfile start
17-03-18 02:48:30.924 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:30.934 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:30.934 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:30.944 -07 000000579 INF: MeasureProfile done
17-03-18 02:48:30.944 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:48:30.944 -07 000000579 INF: Autofocus finished
17-03-18 02:48:31.134 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:31.134 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:31.134 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.177139084192869. ----------
17-03-18 02:48:31.134 -07 000000610 INF: Cycle	104	Tile	5	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:31.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37190, sync = True, waitForSettling = True)
17-03-18 02:48:31.144 -07 000000610 INF: Z Motor: Moving to -0.170245 mm, started at -0.177139 mm, distance = 6.89 um
17-03-18 02:48:31.144 -07 000000610 INF: FPGA: Xmit ZDACW 37190\n [Z Motor]
17-03-18 02:48:31.144 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:48:31.154 -07 000000610 INF: FPGA: 'ZDACW 37190' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:31.154 -07 000000467 INF: FPGA: Recv ZDACR 37190
17-03-18 02:48:31.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:31.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.314 -07 000000579 INF: FPGA: Recv ZSGSRD 35789
17-03-18 02:48:31.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:31.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.334 -07 000000430 INF: FPGA: Recv ZSGSRD 35788
17-03-18 02:48:31.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:48:31.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.344 -07 000000629 INF: FPGA: Recv ZSGSRD 35787
17-03-18 02:48:31.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.354 -07 000000576 INF: FPGA: Recv ZSGSRD 35789
17-03-18 02:48:31.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.364 -07 000000502 INF: FPGA: Recv ZSGSRD 35788
17-03-18 02:48:31.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.374 -07 000000512 INF: FPGA: Recv ZSGSRD 35794
17-03-18 02:48:31.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.384 -07 000000455 INF: FPGA: Recv ZSGSRD 35796
17-03-18 02:48:31.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.394 -07 000000462 INF: FPGA: Recv ZSGSRD 35788
17-03-18 02:48:31.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.404 -07 000000618 INF: FPGA: Recv ZSGSRD 35795
17-03-18 02:48:31.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:31.414 -07 000000501 INF: FPGA: Recv ZSGSRD 35785
17-03-18 02:48:31.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:31.424 -07 000000569 INF: FPGA: Recv ZPIEZORD 31637
17-03-18 02:48:31.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:31.434 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.675 V. Piezo Error = -9.2 V.
17-03-18 02:48:31.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35790 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35788 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35785 (-169.3 uncal um), Max = 35796 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:48:31.434 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35790, posNoise = 6, negNoise = 5
17-03-18 02:48:31.434 -07 000000610 INF: Z Motor: After move to -0.170245, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:31.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-18 02:48:31.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:31.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:31.434 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:31.434 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:31.434 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:31.434 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:31.434 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:31.434 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:31.434 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:48:31.434 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:31.434 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:31.434 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:31.444 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:48:31.444 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:31.444 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:31.444 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:31.454 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:48:31.454 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:48:31.454 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:48:31.454 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:48:31.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37367 150\n [Camera]
17-03-18 02:48:31.514 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:31.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:31.654 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:48:32.054 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 02:48:32.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 02:48:32.054 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:32.054 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 02:48:32.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 02:48:32.064 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:32.064 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:32.064 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:48:32.064 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:32.064 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:48:32.224 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.003063,
17-03-18 02:48:32.244 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37367 783
17-03-18 02:48:32.394 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:32.434 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 02:48:32.434 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 02:48:32.434 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:32.434 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:32.444 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:48:32.444 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:48:32.444 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:32.444 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:32.444 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:48:32.444 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:48:32.584 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:48:32.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:48:32.584 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:32.594 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:48:32.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:48:32.594 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:32.594 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:32.594 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:48:32.594 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:32.594 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:48:32.774 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:48:32.774 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:32.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37367 150' command took 2 ms to send, 1319 ms to get response, and 1323 ms overall
17-03-18 02:48:32.784 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:32.784 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.17024590456476. ------
17-03-18 02:48:32.784 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:32.784 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17672 mm
17-03-18 02:48:32.784 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:32.784 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:48:32.784 -07 000000455 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 02:48:32.784 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38605, sync = True, waitForSettling = False)
17-03-18 02:48:32.784 -07 000000590 INF: Z Motor: Moving to -0.176722 mm, started at -0.170246 mm, distance = -6.48 um
17-03-18 02:48:32.784 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:32.904 -07 000000590 INF: FPGA: Xmit ZDACW 38605\n [Z Motor]
17-03-18 02:48:32.914 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall
17-03-18 02:48:32.914 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:48:32.924 -07 000000590 INF: FPGA: 'ZDACW 38605' command took 0 ms to send, 0 ms to get response, and 133 ms overall
17-03-18 02:48:32.924 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:32.924 -07 000000461 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:48:32.934 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 143 ms overall
17-03-18 02:48:32.934 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:32.934 -07 000000455 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:32.934 -07 000000455 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:32.934 -07 000000455 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:48:32.944 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:32.944 -07 000000606 INF: FPGA: Recv ZDACR 38605
17-03-18 02:48:32.954 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:32.954 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:48:32.954 -07 000000590 INF: Z Motor: MoveAbsStepped took 163 ms (did NOT wait for settling yet))
17-03-18 02:48:32.994 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:48:32.994 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:48:32.994 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:32.994 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:48:32.994 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:48:32.994 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:32.994 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:33.004 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:33.004 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:48:33.004 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:48:33.134 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:33.134 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:48:33.324 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:48:33.334 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-18 02:48:33.374 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:33.374 -07 000000461 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:48:33.384 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:48:33.384 -07 000000455 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:33.384 -07 000000455 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 02:48:33.384 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.120 mm/sec
17-03-18 02:48:34.334 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:34.334 -07 000000629 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:48:34.344 -07 000000455 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:34.344 -07 000000455 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:34.364 -07 000000455 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:34.364 -07 000000455 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:48:34.364 -07 000000455 INF: Y Motor: Moved to 64.0566 after 1581 ms (table move)
17-03-18 02:48:34.374 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176722 mm (DAC = 38605)
17-03-18 02:48:34.374 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.374 -07 000000424 INF: FPGA: Recv ZSGSRD 36808
17-03-18 02:48:34.384 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.384 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.384 -07 000000512 INF: FPGA: Recv ZSGSRD 36802
17-03-18 02:48:34.394 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.394 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.394 -07 000000591 INF: FPGA: Recv ZSGSRD 36796
17-03-18 02:48:34.404 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.404 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.404 -07 000000461 INF: FPGA: Recv ZSGSRD 36791
17-03-18 02:48:34.414 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.414 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.414 -07 000000501 INF: FPGA: Recv ZSGSRD 36796
17-03-18 02:48:34.424 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.424 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.424 -07 000000430 INF: FPGA: Recv ZSGSRD 36796
17-03-18 02:48:34.434 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.434 -07 000000579 INF: FPGA: Recv ZSGSRD 36801
17-03-18 02:48:34.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.444 -07 000000626 INF: FPGA: Recv ZSGSRD 36795
17-03-18 02:48:34.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.454 -07 000000569 INF: FPGA: Recv ZSGSRD 36795
17-03-18 02:48:34.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:34.464 -07 000000629 INF: FPGA: Recv ZSGSRD 36807
17-03-18 02:48:34.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.474 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:34.474 -07 000000618 INF: FPGA: Recv ZPIEZORD 32971
17-03-18 02:48:34.484 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:34.484 -07 000000467 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.5 V.
17-03-18 02:48:34.484 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36799 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36796 (-175.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36791 (-175.8 uncal um), Max = 36808 (-175.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:48:34.484 -07 000000467 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36799, posNoise = 9, negNoise = 8
17-03-18 02:48:34.484 -07 000000467 INF: Z Motor: After move to -0.176722, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:34.484 -07 000000467 INF: Z Motor: Settle wait time = 1583 ms, measure time = 110 ms (allowed 150 ms), total time = 1693 ms
17-03-18 02:48:34.484 -07 000000467 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:34.524 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1736 ms
17-03-18 02:48:34.524 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:34.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:34.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:34.524 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:34.524 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:34.524 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:34.524 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:34.534 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:34.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:34.534 -07 000000606 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:34.534 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:34.544 -07 000000606 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:48:34.544 -07 000000606 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:48:34.544 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:34.594 -07 000000461 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:34.894 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:34.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:34.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:34.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:48:34.934 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:34.934 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:34.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:48:35.014 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:48:35.014 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:35.014 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:35.014 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:48:35.034 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:35.034 -07 000000430 INF: Autofocus start
17-03-18 02:48:35.034 -07 000000430 INF: MeasureProfile start
17-03-18 02:48:35.034 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:35.044 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:35.044 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:35.044 -07 000000430 INF: MeasureProfile done
17-03-18 02:48:35.044 -07 000000430 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:48:35.044 -07 000000430 INF: Autofocus finished
17-03-18 02:48:35.244 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:35.244 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:48:35.254 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176727934615796. ----------
17-03-18 02:48:35.254 -07 000000610 INF: Cycle	104	Tile	6	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:35.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37120, sync = True, waitForSettling = True)
17-03-18 02:48:35.254 -07 000000610 INF: Z Motor: Moving to -0.169924 mm, started at -0.176728 mm, distance = 6.80 um
17-03-18 02:48:35.254 -07 000000610 INF: FPGA: Xmit ZDACW 37120\n [Z Motor]
17-03-18 02:48:35.254 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:48:35.264 -07 000000610 INF: FPGA: 'ZDACW 37120' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:35.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:35.264 -07 000000579 INF: FPGA: Recv ZDACR 37120
17-03-18 02:48:35.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:35.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.424 -07 000000576 INF: FPGA: Recv ZSGSRD 35740
17-03-18 02:48:35.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.434 -07 000000430 INF: FPGA: Recv ZSGSRD 35737
17-03-18 02:48:35.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.444 -07 000000626 INF: FPGA: Recv ZSGSRD 35736
17-03-18 02:48:35.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.454 -07 000000569 INF: FPGA: Recv ZSGSRD 35743
17-03-18 02:48:35.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.464 -07 000000455 INF: FPGA: Recv ZSGSRD 35747
17-03-18 02:48:35.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.474 -07 000000576 INF: FPGA: Recv ZSGSRD 35736
17-03-18 02:48:35.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.484 -07 000000502 INF: FPGA: Recv ZSGSRD 35746
17-03-18 02:48:35.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.494 -07 000000626 INF: FPGA: Recv ZSGSRD 35744
17-03-18 02:48:35.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.504 -07 000000590 INF: FPGA: Recv ZSGSRD 35752
17-03-18 02:48:35.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:48:35.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:35.514 -07 000000591 INF: FPGA: Recv ZSGSRD 35742
17-03-18 02:48:35.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:35.524 -07 000000455 INF: FPGA: Recv ZPIEZORD 31544
17-03-18 02:48:35.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:35.534 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.3 V.
17-03-18 02:48:35.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35742 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35742 (-169.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35736 (-169.0 uncal um), Max = 35752 (-169.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:48:35.534 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35742, posNoise = 10, negNoise = 6
17-03-18 02:48:35.534 -07 000000610 INF: Z Motor: After move to -0.169924, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:35.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:48:35.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:35.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:35.534 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:35.534 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:35.534 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:35.534 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:35.534 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:35.534 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:35.534 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:48:35.534 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:35.534 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:35.534 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:35.534 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:48:35.534 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:35.544 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:35.544 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:35.544 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:48:35.544 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:48:35.544 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:48:35.544 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:48:35.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37296 150\n [Camera]
17-03-18 02:48:35.754 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 02:48:36.154 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:48:36.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:48:36.154 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:36.154 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:48:36.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:48:36.154 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:36.164 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:36.164 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:48:36.164 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:36.164 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:48:36.344 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37296 784
17-03-18 02:48:36.494 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:36.514 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:36.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:36.534 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:48:36.534 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:48:36.534 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:36.534 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:48:36.534 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:48:36.534 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:36.534 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:36.534 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:48:36.544 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:36.544 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:48:36.694 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1125
17-03-18 02:48:36.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1125
17-03-18 02:48:36.694 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:36.694 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:36.694 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:48:36.694 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:48:36.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:48:36.694 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:36.694 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:36.694 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) start.
17-03-18 02:48:36.874 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:48:36.874 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:36.874 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37296 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:48:36.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:36.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.169937542381955. ------
17-03-18 02:48:36.884 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:36.884 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17637 mm
17-03-18 02:48:36.884 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:36.884 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:48:36.884 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38528, sync = True, waitForSettling = False)
17-03-18 02:48:36.884 -07 000000501 INF: Z Motor: Moving to -0.176370 mm, started at -0.169938 mm, distance = -6.43 um
17-03-18 02:48:36.884 -07 000000618 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 02:48:36.884 -07 000000590 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:36.894 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:48:36.894 -07 000000501 INF: FPGA: Xmit ZDACW 38528\n [Z Motor]
17-03-18 02:48:36.894 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:48:36.904 -07 000000501 INF: FPGA: 'ZDACW 38528' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:48:36.904 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:36.904 -07 000000462 INF: FPGA: Recv ZDACR 38528
17-03-18 02:48:36.914 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:36.914 -07 000000501 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 02:48:36.914 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:36.914 -07 000000629 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:48:36.924 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:36.924 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 02:48:36.924 -07 000000618 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:36.924 -07 000000618 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:36.924 -07 000000618 INF: Y Motor: Moving 1338 steps-13
17-03-18 02:48:36.934 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:37.084 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:48:37.084 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1163922192, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:48:37.084 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:48:37.084 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:37.084 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:48:37.084 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:37.094 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:37.094 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:48:37.094 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:48:37.094 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:48:37.124 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:37.124 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 02:48:37.304 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:48:37.304 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:48:37.354 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:37.354 -07 000000501 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:48:37.364 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:48:37.364 -07 000000618 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:37.364 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:48:37.364 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.836 mm, average velocity = 2.160 mm/sec
17-03-18 02:48:37.584 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.026244,
17-03-18 02:48:38.314 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:38.314 -07 000000626 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:48:38.324 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.324 -07 000000618 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:38.344 -07 000000618 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:38.344 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:48:38.344 -07 000000618 INF: Y Motor: Moved to 64.8784 after 1462 ms (table move)
17-03-18 02:48:38.354 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176370 mm (DAC = 38528)
17-03-18 02:48:38.354 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.354 -07 000000467 INF: FPGA: Recv ZSGSRD 36749
17-03-18 02:48:38.364 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:38.364 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.364 -07 000000455 INF: FPGA: Recv ZSGSRD 36742
17-03-18 02:48:38.374 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.374 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.374 -07 000000512 INF: FPGA: Recv ZSGSRD 36749
17-03-18 02:48:38.384 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.384 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.384 -07 000000590 INF: FPGA: Recv ZSGSRD 36742
17-03-18 02:48:38.394 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.394 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.394 -07 000000501 INF: FPGA: Recv ZSGSRD 36750
17-03-18 02:48:38.404 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.404 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.404 -07 000000461 INF: FPGA: Recv ZSGSRD 36746
17-03-18 02:48:38.414 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.414 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.414 -07 000000462 INF: FPGA: Recv ZSGSRD 36738
17-03-18 02:48:38.424 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.424 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.424 -07 000000512 INF: FPGA: Recv ZSGSRD 36744
17-03-18 02:48:38.434 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.434 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.434 -07 000000590 INF: FPGA: Recv ZSGSRD 36740
17-03-18 02:48:38.444 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.444 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:38.444 -07 000000501 INF: FPGA: Recv ZSGSRD 36737
17-03-18 02:48:38.454 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.454 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:38.454 -07 000000461 INF: FPGA: Recv ZPIEZORD 32868
17-03-18 02:48:38.464 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:38.464 -07 000000591 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.879 V. Piezo Error = -8.6 V.
17-03-18 02:48:38.464 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36744 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36743 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36737 (-175.4 uncal um), Max = 36750 (-175.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:48:38.464 -07 000000591 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36744, posNoise = 6, negNoise = 7
17-03-18 02:48:38.464 -07 000000591 INF: Z Motor: After move to -0.176370, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:38.464 -07 000000591 INF: Z Motor: Settle wait time = 1465 ms, measure time = 108 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:48:38.464 -07 000000591 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:38.514 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 02:48:38.514 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:38.514 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:38.514 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:38.514 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:38.514 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:38.514 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:38.514 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:38.514 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:38.514 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:38.524 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:38.524 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:38.534 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:48:38.534 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:48:38.534 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:38.584 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:38.884 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:38.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:38.884 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:38.884 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 02:48:38.924 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:38.924 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:38.924 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:48:38.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:48:38.994 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:39.004 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:48:39.004 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:48:39.024 -07 000000501 INF: Autofocus start
17-03-18 02:48:39.024 -07 000000501 INF: MeasureProfile start
17-03-18 02:48:39.024 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:39.024 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:39.034 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:39.034 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:39.034 -07 000000501 INF: MeasureProfile done
17-03-18 02:48:39.034 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:48:39.034 -07 000000501 INF: Autofocus finished
17-03-18 02:48:39.234 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:39.234 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:39.234 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176374602948. ----------
17-03-18 02:48:39.234 -07 000000610 INF: Cycle	104	Tile	7	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:39.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37060, sync = True, waitForSettling = True)
17-03-18 02:48:39.244 -07 000000610 INF: Z Motor: Moving to -0.169650 mm, started at -0.176375 mm, distance = 6.72 um
17-03-18 02:48:39.244 -07 000000610 INF: FPGA: Xmit ZDACW 37060\n [Z Motor]
17-03-18 02:48:39.244 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:48:39.254 -07 000000610 INF: FPGA: 'ZDACW 37060' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:39.254 -07 000000461 INF: FPGA: Recv ZDACR 37060
17-03-18 02:48:39.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:39.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.414 -07 000000629 INF: FPGA: Recv ZSGSRD 35700
17-03-18 02:48:39.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:39.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.424 -07 000000424 INF: FPGA: Recv ZSGSRD 35701
17-03-18 02:48:39.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.434 -07 000000512 INF: FPGA: Recv ZSGSRD 35700
17-03-18 02:48:39.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.444 -07 000000502 INF: FPGA: Recv ZSGSRD 35697
17-03-18 02:48:39.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.454 -07 000000606 INF: FPGA: Recv ZSGSRD 35695
17-03-18 02:48:39.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.464 -07 000000444 INF: FPGA: Recv ZSGSRD 35700
17-03-18 02:48:39.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.474 -07 000000430 INF: FPGA: Recv ZSGSRD 35698
17-03-18 02:48:39.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.484 -07 000000462 INF: FPGA: Recv ZSGSRD 35699
17-03-18 02:48:39.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.494 -07 000000467 INF: FPGA: Recv ZSGSRD 35700
17-03-18 02:48:39.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:39.504 -07 000000579 INF: FPGA: Recv ZSGSRD 35700
17-03-18 02:48:39.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:39.514 -07 000000569 INF: FPGA: Recv ZPIEZORD 31511
17-03-18 02:48:39.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:39.524 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -9.2 V.
17-03-18 02:48:39.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35699 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35700 (-168.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35695 (-168.8 uncal um), Max = 35701 (-168.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:48:39.524 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35699, posNoise = 2, negNoise = 4
17-03-18 02:48:39.524 -07 000000610 INF: Z Motor: After move to -0.169650, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:39.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:48:39.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:39.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:39.524 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:39.524 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:39.524 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:39.524 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:39.524 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:39.524 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:39.524 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:48:39.524 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:39.524 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:39.524 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:39.534 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:39.534 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:39.534 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:48:39.534 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:39.534 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:48:39.534 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:48:39.544 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:48:39.544 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:48:39.544 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37237 150\n [Camera]
17-03-18 02:48:39.744 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:48:40.144 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:48:40.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:48:40.144 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:40.144 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:40.144 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:48:40.144 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:48:40.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:48:40.144 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:40.144 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:40.144 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:48:40.334 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37237 783
17-03-18 02:48:40.484 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:40.524 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:48:40.524 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:48:40.524 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:40.524 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:48:40.524 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:48:40.524 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:40.524 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:40.524 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:40.524 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:48:40.534 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:48:40.674 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:48:40.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:48:40.674 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:40.674 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:40.674 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:48:40.674 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:48:40.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:48:40.674 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:40.674 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:40.674 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:48:40.864 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:48:40.864 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:40.864 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37237 150' command took 2 ms to send, 1317 ms to get response, and 1324 ms overall
17-03-18 02:48:40.994 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:40.994 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169661301259859. ------
17-03-18 02:48:40.994 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:40.994 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17624 mm
17-03-18 02:48:40.994 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:41.004 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:41.004 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38500, sync = True, waitForSettling = False)
17-03-18 02:48:41.004 -07 000000629 INF: Z Motor: Moving to -0.176242 mm, started at -0.169661 mm, distance = -6.58 um
17-03-18 02:48:41.004 -07 000000629 INF: FPGA: Xmit ZDACW 38500\n [Z Motor]
17-03-18 02:48:41.004 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:48:41.004 -07 000000444 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:48:41.004 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:48:41.004 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:48:41.014 -07 000000629 INF: FPGA: 'ZDACW 38500' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:41.014 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:41.014 -07 000000591 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:48:41.024 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:41.024 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:48:41.024 -07 000000444 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:41.024 -07 000000444 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:41.024 -07 000000444 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:48:41.034 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:41.034 -07 000000591 INF: FPGA: Recv ZDACR 38500
17-03-18 02:48:41.044 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:48:41.044 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:41.044 -07 000000629 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:48:41.084 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 02:48:41.084 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:48:41.084 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:41.084 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 407 ms.
17-03-18 02:48:41.084 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:48:41.084 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:41.084 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:41.094 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:48:41.094 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-18 02:48:41.094 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:48:41.224 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:41.224 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 02:48:41.424 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:48:41.424 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 02:48:41.464 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:41.464 -07 000000461 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:48:41.474 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:48:41.474 -07 000000444 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:41.474 -07 000000444 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:48:41.474 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.110 mm/sec
17-03-18 02:48:41.514 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:41.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:42.424 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:42.424 -07 000000606 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:48:42.434 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:42.434 -07 000000444 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:42.464 -07 000000444 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:42.464 -07 000000444 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:48:42.464 -07 000000444 INF: Y Motor: Moved to 65.7134 after 1460 ms (table move)
17-03-18 02:48:42.464 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176242 mm (DAC = 38500)
17-03-18 02:48:42.464 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.464 -07 000000455 INF: FPGA: Recv ZSGSRD 36729
17-03-18 02:48:42.474 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:48:42.474 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.474 -07 000000576 INF: FPGA: Recv ZSGSRD 36718
17-03-18 02:48:42.484 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.484 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.484 -07 000000462 INF: FPGA: Recv ZSGSRD 36719
17-03-18 02:48:42.494 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.494 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.494 -07 000000579 INF: FPGA: Recv ZSGSRD 36719
17-03-18 02:48:42.504 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.504 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.504 -07 000000629 INF: FPGA: Recv ZSGSRD 36724
17-03-18 02:48:42.514 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.514 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.514 -07 000000461 INF: FPGA: Recv ZSGSRD 36729
17-03-18 02:48:42.524 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.524 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.524 -07 000000618 INF: FPGA: Recv ZSGSRD 36728
17-03-18 02:48:42.534 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.534 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.534 -07 000000561 INF: FPGA: Recv ZSGSRD 36724
17-03-18 02:48:42.544 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.544 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.544 -07 000000579 INF: FPGA: Recv ZSGSRD 36717
17-03-18 02:48:42.554 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.554 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:42.554 -07 000000569 INF: FPGA: Recv ZSGSRD 36720
17-03-18 02:48:42.564 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.564 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:42.564 -07 000000424 INF: FPGA: Recv ZPIEZORD 32858
17-03-18 02:48:42.574 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:42.574 -07 000000502 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.875 V. Piezo Error = -8.6 V.
17-03-18 02:48:42.574 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36723 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36722 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36717 (-175.3 uncal um), Max = 36729 (-175.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:48:42.574 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36723, posNoise = 6, negNoise = 6
17-03-18 02:48:42.574 -07 000000502 INF: Z Motor: After move to -0.176242, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:42.574 -07 000000502 INF: Z Motor: Settle wait time = 1463 ms, measure time = 105 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:48:42.574 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:42.624 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:48:42.624 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:42.624 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:42.624 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:42.624 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:42.624 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:42.624 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:42.624 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:42.624 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:48:42.624 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:42.634 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:42.634 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:42.644 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:48:42.644 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:48:42.644 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:42.694 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:42.944 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.018051,
17-03-18 02:48:42.994 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:42.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:42.994 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:42.994 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:48:43.024 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:43.034 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:43.034 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:48:43.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:48:43.104 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:43.104 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:43.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:48:43.134 -07 000000618 INF: Autofocus start
17-03-18 02:48:43.134 -07 000000618 INF: MeasureProfile start
17-03-18 02:48:43.134 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:43.144 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:43.144 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:48:43.144 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:43.154 -07 000000618 INF: MeasureProfile done
17-03-18 02:48:43.154 -07 000000618 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:48:43.154 -07 000000618 INF: Autofocus finished
17-03-18 02:48:43.344 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:43.344 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-18 02:48:43.354 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176239694493023. ----------
17-03-18 02:48:43.354 -07 000000610 INF: Cycle	104	Tile	8	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:43.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36980, sync = True, waitForSettling = True)
17-03-18 02:48:43.354 -07 000000610 INF: Z Motor: Moving to -0.169284 mm, started at -0.176240 mm, distance = 6.96 um
17-03-18 02:48:43.354 -07 000000610 INF: FPGA: Xmit ZDACW 36980\n [Z Motor]
17-03-18 02:48:43.354 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:48:43.364 -07 000000610 INF: FPGA: 'ZDACW 36980' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:48:43.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:43.364 -07 000000590 INF: FPGA: Recv ZDACR 36980
17-03-18 02:48:43.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:43.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.524 -07 000000444 INF: FPGA: Recv ZSGSRD 35642
17-03-18 02:48:43.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.534 -07 000000629 INF: FPGA: Recv ZSGSRD 35642
17-03-18 02:48:43.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.544 -07 000000579 INF: FPGA: Recv ZSGSRD 35637
17-03-18 02:48:43.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.554 -07 000000424 INF: FPGA: Recv ZSGSRD 35637
17-03-18 02:48:43.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.564 -07 000000502 INF: FPGA: Recv ZSGSRD 35640
17-03-18 02:48:43.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.574 -07 000000461 INF: FPGA: Recv ZSGSRD 35644
17-03-18 02:48:43.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.584 -07 000000501 INF: FPGA: Recv ZSGSRD 35641
17-03-18 02:48:43.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.594 -07 000000455 INF: FPGA: Recv ZSGSRD 35640
17-03-18 02:48:43.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.604 -07 000000569 INF: FPGA: Recv ZSGSRD 35635
17-03-18 02:48:43.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:43.614 -07 000000606 INF: FPGA: Recv ZSGSRD 35642
17-03-18 02:48:43.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:43.624 -07 000000444 INF: FPGA: Recv ZPIEZORD 31420
17-03-18 02:48:43.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:43.634 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.3 V.
17-03-18 02:48:43.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35640 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35640 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35635 (-168.4 uncal um), Max = 35644 (-168.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:48:43.634 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35640, posNoise = 4, negNoise = 5
17-03-18 02:48:43.634 -07 000000610 INF: Z Motor: After move to -0.169284, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:43.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:48:43.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:43.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:43.634 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:43.634 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:43.634 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:43.634 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:43.634 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:48:43.634 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:43.634 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:43.634 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:43.634 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:48:43.634 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:43.644 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:43.644 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:43.644 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:48:43.644 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:43.654 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:48:43.654 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:48:43.654 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:48:43.654 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:48:43.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37157 150\n [Camera]
17-03-18 02:48:43.854 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:48:44.254 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:48:44.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:48:44.254 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:44.254 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:44.254 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:48:44.254 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:48:44.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:48:44.254 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:44.264 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:44.264 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:48:44.444 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37157 786
17-03-18 02:48:44.594 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:44.634 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:48:44.634 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:48:44.634 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:44.634 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:48:44.634 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:48:44.634 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:44.634 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:44.634 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:48:44.634 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:44.644 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:48:44.784 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:48:44.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:48:44.784 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:44.784 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:48:44.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:48:44.794 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:44.794 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:44.794 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:48:44.794 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:44.794 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:48:44.974 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:48:44.974 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:44.974 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37157 150' command took 2 ms to send, 1318 ms to get response, and 1323 ms overall
17-03-18 02:48:44.984 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:44.984 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169282272743495. ------
17-03-18 02:48:44.984 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17584 mm
17-03-18 02:48:44.984 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:44.984 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:45.104 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:45.104 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-18 02:48:45.104 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:45.104 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:48:45.104 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 02:48:45.104 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 38412, sync = True, waitForSettling = False)
17-03-18 02:48:45.104 -07 000000444 INF: Z Motor: Moving to -0.175839 mm, started at -0.169282 mm, distance = -6.56 um
17-03-18 02:48:45.114 -07 000000444 INF: FPGA: Xmit ZDACW 38412\n [Z Motor]
17-03-18 02:48:45.114 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:48:45.124 -07 000000444 INF: FPGA: 'ZDACW 38412' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:48:45.124 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:45.124 -07 000000626 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:48:45.134 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:48:45.134 -07 000000424 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:45.134 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:45.134 -07 000000455 INF: FPGA: Recv ZDACR 38412
17-03-18 02:48:45.134 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:45.134 -07 000000424 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:48:45.144 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:48:45.144 -07 000000444 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 02:48:45.144 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:45.184 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:48:45.184 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:48:45.184 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:45.184 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:48:45.184 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:48:45.184 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:45.184 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:45.194 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:48:45.194 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:48:45.194 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:48:45.304 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:45.304 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 203 ms overall
17-03-18 02:48:45.524 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:48:45.524 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 385 ms overall
17-03-18 02:48:45.564 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:45.564 -07 000000461 INF: FPGA: Recv YRDPOS 136270
17-03-18 02:48:45.574 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:48:45.574 -07 000000424 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:45.574 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:48:45.574 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.174 mm/sec
17-03-18 02:48:46.514 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:46.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:46.524 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:46.524 -07 000000569 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:48:46.534 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:46.534 -07 000000424 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:46.564 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:46.564 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:48:46.564 -07 000000424 INF: Y Motor: Moved to 66.5386 after 1453 ms (table move)
17-03-18 02:48:46.564 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175839 mm (DAC = 38412)
17-03-18 02:48:46.564 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.564 -07 000000512 INF: FPGA: Recv ZSGSRD 36658
17-03-18 02:48:46.574 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:48:46.574 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.574 -07 000000590 INF: FPGA: Recv ZSGSRD 36654
17-03-18 02:48:46.584 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.584 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.584 -07 000000626 INF: FPGA: Recv ZSGSRD 36656
17-03-18 02:48:46.594 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.594 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.594 -07 000000591 INF: FPGA: Recv ZSGSRD 36665
17-03-18 02:48:46.604 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.604 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.604 -07 000000579 INF: FPGA: Recv ZSGSRD 36667
17-03-18 02:48:46.614 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.614 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.614 -07 000000512 INF: FPGA: Recv ZSGSRD 36665
17-03-18 02:48:46.624 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.624 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.624 -07 000000590 INF: FPGA: Recv ZSGSRD 36661
17-03-18 02:48:46.634 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.634 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.634 -07 000000626 INF: FPGA: Recv ZSGSRD 36659
17-03-18 02:48:46.644 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.644 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.644 -07 000000618 INF: FPGA: Recv ZSGSRD 36661
17-03-18 02:48:46.654 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.654 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:46.654 -07 000000579 INF: FPGA: Recv ZSGSRD 36660
17-03-18 02:48:46.664 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.664 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:46.664 -07 000000455 INF: FPGA: Recv ZPIEZORD 32790
17-03-18 02:48:46.674 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:46.674 -07 000000467 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.6 V.
17-03-18 02:48:46.674 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36661 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36660 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36654 (-174.9 uncal um), Max = 36667 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:48:46.674 -07 000000467 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36661, posNoise = 6, negNoise = 7
17-03-18 02:48:46.674 -07 000000467 INF: Z Motor: After move to -0.175839, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:46.674 -07 000000467 INF: Z Motor: Settle wait time = 1457 ms, measure time = 106 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:48:46.674 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:46.724 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1735 ms
17-03-18 02:48:46.724 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:46.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:46.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:46.724 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:46.724 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:46.724 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:46.724 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:46.724 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:48:46.724 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:46.734 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:46.734 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:46.734 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:48:46.734 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:48:46.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:46.784 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:47.084 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:47.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:47.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:47.094 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:48:47.124 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:47.124 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:47.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 387 ms overall
17-03-18 02:48:47.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:48:47.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:47.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:47.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:48:47.224 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:47.224 -07 000000579 INF: Autofocus start
17-03-18 02:48:47.224 -07 000000579 INF: MeasureProfile start
17-03-18 02:48:47.224 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:47.234 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:47.234 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:47.234 -07 000000579 INF: MeasureProfile done
17-03-18 02:48:47.234 -07 000000579 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:48:47.234 -07 000000579 INF: Autofocus finished
17-03-18 02:48:47.434 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:47.434 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:47.434 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175841393340233. ----------
17-03-18 02:48:47.434 -07 000000610 INF: Cycle	104	Tile	9	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:47.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36909, sync = True, waitForSettling = True)
17-03-18 02:48:47.444 -07 000000610 INF: Z Motor: Moving to -0.168959 mm, started at -0.175841 mm, distance = 6.88 um
17-03-18 02:48:47.444 -07 000000610 INF: FPGA: Xmit ZDACW 36909\n [Z Motor]
17-03-18 02:48:47.444 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:48:47.454 -07 000000610 INF: FPGA: 'ZDACW 36909' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:47.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:47.454 -07 000000618 INF: FPGA: Recv ZDACR 36909
17-03-18 02:48:47.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:47.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.614 -07 000000512 INF: FPGA: Recv ZSGSRD 35588
17-03-18 02:48:47.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:47.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.624 -07 000000590 INF: FPGA: Recv ZSGSRD 35594
17-03-18 02:48:47.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.634 -07 000000424 INF: FPGA: Recv ZSGSRD 35587
17-03-18 02:48:47.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.644 -07 000000576 INF: FPGA: Recv ZSGSRD 35593
17-03-18 02:48:47.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.654 -07 000000461 INF: FPGA: Recv ZSGSRD 35595
17-03-18 02:48:47.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.664 -07 000000626 INF: FPGA: Recv ZSGSRD 35589
17-03-18 02:48:47.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.674 -07 000000591 INF: FPGA: Recv ZSGSRD 35597
17-03-18 02:48:47.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.684 -07 000000502 INF: FPGA: Recv ZSGSRD 35588
17-03-18 02:48:47.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.694 -07 000000561 INF: FPGA: Recv ZSGSRD 35594
17-03-18 02:48:47.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:47.704 -07 000000618 INF: FPGA: Recv ZSGSRD 35592
17-03-18 02:48:47.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:47.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:47.724 -07 000000561 INF: FPGA: Recv ZPIEZORD 31376
17-03-18 02:48:47.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:48:47.734 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.3 V.
17-03-18 02:48:47.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35592 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35592 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35587 (-168.1 uncal um), Max = 35597 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:48:47.734 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35592, posNoise = 5, negNoise = 5
17-03-18 02:48:47.734 -07 000000610 INF: Z Motor: After move to -0.168959, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:47.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:48:47.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:47.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:47.734 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:47.734 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:47.734 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:47.734 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:47.734 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:47.734 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:48:47.734 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:47.734 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:47.734 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:48:47.734 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:47.744 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:47.744 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:47.744 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:48:47.744 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:47.744 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:48:47.744 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:48:47.754 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:48:47.754 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:48:47.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37086 150\n [Camera]
17-03-18 02:48:47.974 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:48:48.304 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.003063,
17-03-18 02:48:48.364 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:48:48.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:48:48.364 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:48.374 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:48:48.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:48:48.374 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:48.374 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:48.374 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:48:48.374 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:48.374 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:48:48.564 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37086 783
17-03-18 02:48:48.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:48.754 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:48:48.754 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:48:48.754 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:48.754 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:48:48.754 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:48:48.754 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:48.764 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:48:48.764 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:48:48.764 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:48:48.774 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:48:48.904 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:48:48.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:48:48.904 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:48.904 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:48.904 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:48:48.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:48:48.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:48:48.904 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:48.904 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:48.904 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 02:48:49.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:48:49.094 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:49.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37086 150' command took 2 ms to send, 1314 ms to get response, and 1334 ms overall
17-03-18 02:48:49.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:49.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168973910560691. ------
17-03-18 02:48:49.104 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:49.104 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17579 mm
17-03-18 02:48:49.104 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:49.104 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38402, sync = True, waitForSettling = False)
17-03-18 02:48:49.104 -07 000000561 INF: Z Motor: Moving to -0.175793 mm, started at -0.168974 mm, distance = -6.82 um
17-03-18 02:48:49.104 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:48:49.104 -07 000000501 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 02:48:49.104 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:49.114 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:49.114 -07 000000561 INF: FPGA: Xmit ZDACW 38402\n [Z Motor]
17-03-18 02:48:49.114 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:48:49.124 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:49.124 -07 000000561 INF: FPGA: 'ZDACW 38402' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:48:49.124 -07 000000430 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:48:49.134 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:49.134 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:48:49.134 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:49.134 -07 000000501 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:49.134 -07 000000501 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:48:49.144 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:49.144 -07 000000502 INF: FPGA: Recv ZDACR 38402
17-03-18 02:48:49.154 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:49.154 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:48:49.154 -07 000000561 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:48:49.304 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:48:49.304 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:48:49.304 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:49.304 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:48:49.304 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:48:49.304 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:49.314 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:49.314 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-18 02:48:49.314 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:48:49.314 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:48:49.334 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:49.334 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:48:49.524 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:48:49.524 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:48:49.574 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:49.574 -07 000000561 INF: FPGA: Recv YRDPOS 137976
17-03-18 02:48:49.584 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:49.584 -07 000000501 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:49.584 -07 000000501 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 02:48:49.584 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:48:50.534 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:50.534 -07 000000569 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:48:50.544 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:50.544 -07 000000501 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:50.564 -07 000000501 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:50.564 -07 000000501 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:48:50.564 -07 000000501 INF: Y Motor: Moved to 67.3716 after 1463 ms (table move)
17-03-18 02:48:50.574 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175793 mm (DAC = 38402)
17-03-18 02:48:50.574 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.574 -07 000000424 INF: FPGA: Recv ZSGSRD 36665
17-03-18 02:48:50.584 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:50.584 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.584 -07 000000618 INF: FPGA: Recv ZSGSRD 36660
17-03-18 02:48:50.594 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.594 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.594 -07 000000591 INF: FPGA: Recv ZSGSRD 36654
17-03-18 02:48:50.604 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.604 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.604 -07 000000467 INF: FPGA: Recv ZSGSRD 36655
17-03-18 02:48:50.614 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.614 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.614 -07 000000502 INF: FPGA: Recv ZSGSRD 36654
17-03-18 02:48:50.624 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.624 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.624 -07 000000569 INF: FPGA: Recv ZSGSRD 36648
17-03-18 02:48:50.634 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.634 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.634 -07 000000579 INF: FPGA: Recv ZSGSRD 36653
17-03-18 02:48:50.644 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.644 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.644 -07 000000501 INF: FPGA: Recv ZSGSRD 36651
17-03-18 02:48:50.654 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.654 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.654 -07 000000462 INF: FPGA: Recv ZSGSRD 36661
17-03-18 02:48:50.664 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.664 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:50.664 -07 000000502 INF: FPGA: Recv ZSGSRD 36659
17-03-18 02:48:50.674 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.674 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:50.674 -07 000000512 INF: FPGA: Recv ZPIEZORD 32787
17-03-18 02:48:50.684 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:50.684 -07 000000461 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.860 V. Piezo Error = -8.6 V.
17-03-18 02:48:50.684 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36656 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36654 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36648 (-174.9 uncal um), Max = 36665 (-175.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:48:50.684 -07 000000461 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36656, posNoise = 9, negNoise = 8
17-03-18 02:48:50.684 -07 000000461 INF: Z Motor: After move to -0.175793, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:50.684 -07 000000461 INF: Z Motor: Settle wait time = 1468 ms, measure time = 107 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:48:50.684 -07 000000461 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:50.734 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:48:50.734 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:50.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:50.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:50.734 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:50.734 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:50.734 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:50.734 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:50.734 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:50.734 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:50.744 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:50.744 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:50.754 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:48:50.754 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:48:50.754 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:50.804 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:51.104 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:51.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:51.104 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:51.104 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 02:48:51.144 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:51.144 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:51.144 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall
17-03-18 02:48:51.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 118 ms.
17-03-18 02:48:51.224 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:51.224 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:48:51.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 02:48:51.244 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:51.244 -07 000000430 INF: Autofocus start
17-03-18 02:48:51.244 -07 000000430 INF: MeasureProfile start
17-03-18 02:48:51.244 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:51.254 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:48:51.254 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:51.264 -07 000000430 INF: MeasureProfile done
17-03-18 02:48:51.264 -07 000000430 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:48:51.264 -07 000000430 INF: Autofocus finished
17-03-18 02:48:51.454 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:51.454 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:51.454 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175809272279525. ----------
17-03-18 02:48:51.454 -07 000000610 INF: Cycle	104	Tile	10	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:51.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36916, sync = True, waitForSettling = True)
17-03-18 02:48:51.464 -07 000000610 INF: Z Motor: Moving to -0.168991 mm, started at -0.175809 mm, distance = 6.82 um
17-03-18 02:48:51.464 -07 000000610 INF: FPGA: Xmit ZDACW 36916\n [Z Motor]
17-03-18 02:48:51.464 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:48:51.474 -07 000000610 INF: FPGA: 'ZDACW 36916' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:51.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:51.474 -07 000000569 INF: FPGA: Recv ZDACR 36916
17-03-18 02:48:51.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:51.514 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:51.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:51.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.634 -07 000000579 INF: FPGA: Recv ZSGSRD 35596
17-03-18 02:48:51.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.644 -07 000000462 INF: FPGA: Recv ZSGSRD 35592
17-03-18 02:48:51.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.654 -07 000000606 INF: FPGA: Recv ZSGSRD 35596
17-03-18 02:48:51.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.664 -07 000000455 INF: FPGA: Recv ZSGSRD 35596
17-03-18 02:48:51.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.674 -07 000000424 INF: FPGA: Recv ZSGSRD 35598
17-03-18 02:48:51.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.684 -07 000000444 INF: FPGA: Recv ZSGSRD 35591
17-03-18 02:48:51.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.694 -07 000000430 INF: FPGA: Recv ZSGSRD 35604
17-03-18 02:48:51.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35600
17-03-18 02:48:51.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.714 -07 000000626 INF: FPGA: Recv ZSGSRD 35599
17-03-18 02:48:51.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:51.724 -07 000000569 INF: FPGA: Recv ZSGSRD 35594
17-03-18 02:48:51.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:51.734 -07 000000591 INF: FPGA: Recv ZPIEZORD 31373
17-03-18 02:48:51.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:51.744 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.3 V.
17-03-18 02:48:51.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35597 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35591 (-168.1 uncal um), Max = 35604 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:48:51.744 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35597, posNoise = 7, negNoise = 6
17-03-18 02:48:51.744 -07 000000610 INF: Z Motor: After move to -0.168991, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:51.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:48:51.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:51.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:51.744 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:51.744 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:51.744 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:51.744 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:51.744 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:51.744 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:51.744 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:51.744 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:51.744 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:48:51.744 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:51.754 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:48:51.754 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:51.754 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:51.754 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:51.764 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:48:51.764 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:48:51.764 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:48:51.764 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:48:51.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 37093 150\n [Camera]
17-03-18 02:48:51.964 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:48:52.364 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:48:52.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:48:52.364 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:48:52.364 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:52.364 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:52.364 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) start.
17-03-18 02:48:52.364 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:48:52.364 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:52.364 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:52.364 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:48:52.554 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37093 783
17-03-18 02:48:52.704 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:52.744 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:48:52.744 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:48:52.744 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:52.754 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:48:52.754 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:48:52.754 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:52.754 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:52.754 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:48:52.754 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:52.764 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:48:52.894 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:48:52.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:48:52.894 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:52.894 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:52.894 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:48:52.894 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:48:52.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:48:52.904 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:52.904 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:52.904 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:48:53.084 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:48:53.084 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:53.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 37093 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:48:53.094 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:53.094 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.1690060316214. ------
17-03-18 02:48:53.224 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17520 mm
17-03-18 02:48:53.224 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:53.224 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:48:53.224 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38273, sync = True, waitForSettling = False)
17-03-18 02:48:53.224 -07 000000579 INF: Z Motor: Moving to -0.175203 mm, started at -0.169006 mm, distance = -6.20 um
17-03-18 02:48:53.224 -07 000000455 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:48:53.234 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:53.234 -07 000000626 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:48:53.244 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:48:53.244 -07 000000455 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:53.244 -07 000000455 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:53.244 -07 000000455 INF: Y Motor: Moving 1346 steps-24
17-03-18 02:48:53.244 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:53.244 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:53.254 -07 000000579 INF: FPGA: Xmit ZDACW 38273\n [Z Motor]
17-03-18 02:48:53.254 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:48:53.254 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:48:53.264 -07 000000579 INF: FPGA: 'ZDACW 38273' command took 0 ms to send, 0 ms to get response, and 34 ms overall
17-03-18 02:48:53.274 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:53.284 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:53.294 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:53.294 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:48:53.294 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:48:53.294 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:53.294 -07 000000462 INF: FPGA: Recv ZDACR 38273
17-03-18 02:48:53.294 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:48:53.294 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:48:53.294 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:53.294 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:53.294 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:48:53.294 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:48:53.304 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:48:53.304 -07 000000579 INF: Z Motor: MoveAbsStepped took 74 ms (did NOT wait for settling yet))
17-03-18 02:48:53.304 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:48:53.484 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:53.484 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-18 02:48:53.644 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:48:53.644 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 408 ms overall
17-03-18 02:48:53.664 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.996267,
17-03-18 02:48:53.704 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:53.704 -07 000000444 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:48:53.714 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:48:53.714 -07 000000455 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:53.714 -07 000000455 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:48:53.714 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.841 mm, average velocity = 2.061 mm/sec
17-03-18 02:48:54.664 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:54.664 -07 000000424 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:48:54.674 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:54.674 -07 000000455 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:54.694 -07 000000455 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:54.694 -07 000000455 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:48:54.694 -07 000000455 INF: Y Motor: Moved to 68.2046 after 1472 ms (table move)
17-03-18 02:48:54.704 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175203 mm (DAC = 38273)
17-03-18 02:48:54.704 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.704 -07 000000512 INF: FPGA: Recv ZSGSRD 36561
17-03-18 02:48:54.714 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:54.714 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.714 -07 000000462 INF: FPGA: Recv ZSGSRD 36567
17-03-18 02:48:54.724 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.724 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.724 -07 000000569 INF: FPGA: Recv ZSGSRD 36565
17-03-18 02:48:54.734 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.734 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.734 -07 000000579 INF: FPGA: Recv ZSGSRD 36562
17-03-18 02:48:54.744 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.744 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.744 -07 000000626 INF: FPGA: Recv ZSGSRD 36557
17-03-18 02:48:54.754 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.754 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.754 -07 000000444 INF: FPGA: Recv ZSGSRD 36554
17-03-18 02:48:54.764 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.764 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.764 -07 000000629 INF: FPGA: Recv ZSGSRD 36565
17-03-18 02:48:54.774 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.774 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.774 -07 000000606 INF: FPGA: Recv ZSGSRD 36568
17-03-18 02:48:54.784 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.784 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.784 -07 000000591 INF: FPGA: Recv ZSGSRD 36562
17-03-18 02:48:54.794 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.794 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:54.794 -07 000000579 INF: FPGA: Recv ZSGSRD 36571
17-03-18 02:48:54.804 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.804 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:54.804 -07 000000467 INF: FPGA: Recv ZPIEZORD 32673
17-03-18 02:48:54.814 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:54.814 -07 000000561 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.6 V.
17-03-18 02:48:54.814 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36563 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36564 (-174.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36554 (-174.3 uncal um), Max = 36571 (-174.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:48:54.814 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36563, posNoise = 8, negNoise = 9
17-03-18 02:48:54.814 -07 000000561 INF: Z Motor: After move to -0.175203, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:54.814 -07 000000561 INF: Z Motor: Settle wait time = 1476 ms, measure time = 108 ms (allowed 150 ms), total time = 1584 ms
17-03-18 02:48:54.814 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:54.864 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1638 ms
17-03-18 02:48:54.864 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:54.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:54.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:54.864 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:54.864 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:54.864 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:54.864 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:54.864 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:48:54.864 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:54.874 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:54.874 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:54.874 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:48:54.874 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:48:54.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:54.924 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:55.224 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:55.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:55.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:55.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:48:55.264 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:55.264 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:55.264 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:48:55.344 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:48:55.344 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:55.344 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:55.344 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:48:55.364 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:55.364 -07 000000461 INF: Autofocus start
17-03-18 02:48:55.364 -07 000000461 INF: MeasureProfile start
17-03-18 02:48:55.364 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:55.374 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:48:55.374 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:55.374 -07 000000461 INF: MeasureProfile done
17-03-18 02:48:55.374 -07 000000461 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:48:55.374 -07 000000461 INF: Autofocus finished
17-03-18 02:48:55.574 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:55.574 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:55.574 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175211820550341. ----------
17-03-18 02:48:55.574 -07 000000610 INF: Cycle	104	Tile	11	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:55.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36805, sync = True, waitForSettling = True)
17-03-18 02:48:55.584 -07 000000610 INF: Z Motor: Moving to -0.168482 mm, started at -0.175212 mm, distance = 6.73 um
17-03-18 02:48:55.584 -07 000000610 INF: FPGA: Xmit ZDACW 36805\n [Z Motor]
17-03-18 02:48:55.584 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:48:55.594 -07 000000610 INF: FPGA: 'ZDACW 36805' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:48:55.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:55.594 -07 000000576 INF: FPGA: Recv ZDACR 36805
17-03-18 02:48:55.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:55.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.754 -07 000000618 INF: FPGA: Recv ZSGSRD 35520
17-03-18 02:48:55.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:55.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.764 -07 000000561 INF: FPGA: Recv ZSGSRD 35511
17-03-18 02:48:55.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.774 -07 000000430 INF: FPGA: Recv ZSGSRD 35515
17-03-18 02:48:55.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.784 -07 000000629 INF: FPGA: Recv ZSGSRD 35523
17-03-18 02:48:55.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.794 -07 000000501 INF: FPGA: Recv ZSGSRD 35522
17-03-18 02:48:55.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.804 -07 000000512 INF: FPGA: Recv ZSGSRD 35526
17-03-18 02:48:55.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.814 -07 000000467 INF: FPGA: Recv ZSGSRD 35513
17-03-18 02:48:55.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.824 -07 000000626 INF: FPGA: Recv ZSGSRD 35518
17-03-18 02:48:55.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.834 -07 000000606 INF: FPGA: Recv ZSGSRD 35513
17-03-18 02:48:55.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:55.844 -07 000000444 INF: FPGA: Recv ZSGSRD 35513
17-03-18 02:48:55.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:55.854 -07 000000579 INF: FPGA: Recv ZPIEZORD 31288
17-03-18 02:48:55.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:55.864 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.3 V.
17-03-18 02:48:55.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35517 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35516 (-167.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35511 (-167.6 uncal um), Max = 35526 (-167.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:48:55.864 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35517, posNoise = 9, negNoise = 6
17-03-18 02:48:55.864 -07 000000610 INF: Z Motor: After move to -0.168482, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:55.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:48:55.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:55.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:55.864 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:55.864 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:55.864 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:55.864 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:55.864 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:55.864 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:55.864 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:55.864 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:55.864 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:48:55.864 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:55.874 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:48:55.874 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:48:55.874 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:55.874 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:55.884 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:48:55.884 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:48:55.884 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:48:55.884 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:48:55.884 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36982 150\n [Camera]
17-03-18 02:48:56.084 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:48:56.484 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:48:56.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:48:56.484 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:56.494 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:48:56.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:48:56.494 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:56.494 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:48:56.494 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:56.494 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:56.494 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:48:56.514 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:48:56.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:48:56.674 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36982 783
17-03-18 02:48:56.824 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:48:56.874 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:48:56.874 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:48:56.874 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:56.874 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:48:56.874 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:48:56.874 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:56.884 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:56.884 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:48:56.884 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:48:56.884 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:48:57.024 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:48:57.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:48:57.024 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:48:57.024 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:48:57.024 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:48:57.024 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:48:57.024 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:48:57.024 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:48:57.024 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:48:57.034 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:48:57.214 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:48:57.214 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:48:57.214 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36982 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-18 02:48:57.214 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:48:57.214 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168492094650059. ------
17-03-18 02:48:57.334 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17514 mm
17-03-18 02:48:57.334 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:48:57.334 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:57.334 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:57.334 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:48:57.334 -07 000000512 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 02:48:57.334 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 38260, sync = True, waitForSettling = False)
17-03-18 02:48:57.334 -07 000000590 INF: Z Motor: Moving to -0.175143 mm, started at -0.168492 mm, distance = -6.65 um
17-03-18 02:48:57.344 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:57.344 -07 000000590 INF: FPGA: Xmit ZDACW 38260\n [Z Motor]
17-03-18 02:48:57.344 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:48:57.354 -07 000000590 INF: FPGA: 'ZDACW 38260' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:48:57.354 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:57.354 -07 000000455 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:48:57.364 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:48:57.364 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:48:57.364 -07 000000512 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:57.364 -07 000000512 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:48:57.364 -07 000000512 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:48:57.374 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:57.374 -07 000000618 INF: FPGA: Recv ZDACR 38260
17-03-18 02:48:57.384 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:48:57.384 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:48:57.384 -07 000000590 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:48:57.414 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:48:57.414 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:48:57.414 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:57.414 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:48:57.424 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:48:57.424 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:48:57.424 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:57.424 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:48:57.424 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:48:57.424 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:48:57.564 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:48:57.564 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:48:57.764 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:48:57.764 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall
17-03-18 02:48:57.804 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:57.804 -07 000000626 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:48:57.814 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:48:57.814 -07 000000512 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:57.814 -07 000000512 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:48:57.814 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 02:48:58.764 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:48:58.764 -07 000000618 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:48:58.774 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:58.774 -07 000000512 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:48:58.794 -07 000000512 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:48:58.794 -07 000000512 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:48:58.794 -07 000000512 INF: Y Motor: Moved to 69.0269 after 1461 ms (table move)
17-03-18 02:48:58.804 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175143 mm (DAC = 38260)
17-03-18 02:48:58.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.804 -07 000000629 INF: FPGA: Recv ZSGSRD 36555
17-03-18 02:48:58.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:58.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.814 -07 000000462 INF: FPGA: Recv ZSGSRD 36556
17-03-18 02:48:58.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.824 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.824 -07 000000569 INF: FPGA: Recv ZSGSRD 36555
17-03-18 02:48:58.834 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.834 -07 000000561 INF: FPGA: Recv ZSGSRD 36558
17-03-18 02:48:58.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.844 -07 000000444 INF: FPGA: Recv ZSGSRD 36551
17-03-18 02:48:58.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.854 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.854 -07 000000461 INF: FPGA: Recv ZSGSRD 36553
17-03-18 02:48:58.864 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.864 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.864 -07 000000462 INF: FPGA: Recv ZSGSRD 36551
17-03-18 02:48:58.874 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.874 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.874 -07 000000424 INF: FPGA: Recv ZSGSRD 36554
17-03-18 02:48:58.884 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.884 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.884 -07 000000561 INF: FPGA: Recv ZSGSRD 36558
17-03-18 02:48:58.894 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.894 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:58.894 -07 000000629 INF: FPGA: Recv ZSGSRD 36553
17-03-18 02:48:58.904 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.904 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:58.904 -07 000000618 INF: FPGA: Recv ZPIEZORD 32690
17-03-18 02:48:58.914 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:58.914 -07 000000467 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.838 V. Piezo Error = -8.5 V.
17-03-18 02:48:58.914 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36554 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36554 (-174.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36551 (-174.2 uncal um), Max = 36558 (-174.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:48:58.914 -07 000000467 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36554, posNoise = 4, negNoise = 3
17-03-18 02:48:58.914 -07 000000467 INF: Z Motor: After move to -0.175143, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:58.914 -07 000000467 INF: Z Motor: Settle wait time = 1465 ms, measure time = 107 ms (allowed 150 ms), total time = 1572 ms
17-03-18 02:48:58.914 -07 000000467 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:48:58.964 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 02:48:58.964 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:48:58.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:58.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:58.964 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:48:58.964 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:58.964 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:58.964 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:48:58.964 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:48:58.964 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:58.974 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:58.974 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:48:58.984 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:48:58.984 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:48:58.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:48:59.024 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.989471,
17-03-18 02:48:59.024 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:48:59.324 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:48:59.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:48:59.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:48:59.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:48:59.364 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:48:59.364 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:48:59.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:48:59.444 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:48:59.444 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:48:59.444 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:48:59.444 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:48:59.464 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:48:59.464 -07 000000579 INF: Autofocus start
17-03-18 02:48:59.464 -07 000000579 INF: MeasureProfile start
17-03-18 02:48:59.464 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:48:59.474 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:48:59.474 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:48:59.474 -07 000000579 INF: MeasureProfile done
17-03-18 02:48:59.474 -07 000000579 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:48:59.474 -07 000000579 INF: Autofocus finished
17-03-18 02:48:59.674 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:48:59.674 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:48:59.674 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175154002641065. ----------
17-03-18 02:48:59.674 -07 000000610 INF: Cycle	104	Tile	12	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:48:59.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36775, sync = True, waitForSettling = True)
17-03-18 02:48:59.684 -07 000000610 INF: Z Motor: Moving to -0.168345 mm, started at -0.175154 mm, distance = 6.81 um
17-03-18 02:48:59.684 -07 000000610 INF: FPGA: Xmit ZDACW 36775\n [Z Motor]
17-03-18 02:48:59.684 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:48:59.694 -07 000000610 INF: FPGA: 'ZDACW 36775' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:48:59.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:48:59.694 -07 000000501 INF: FPGA: Recv ZDACR 36775
17-03-18 02:48:59.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:48:59.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.854 -07 000000629 INF: FPGA: Recv ZSGSRD 35497
17-03-18 02:48:59.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:48:59.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.864 -07 000000618 INF: FPGA: Recv ZSGSRD 35504
17-03-18 02:48:59.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.874 -07 000000467 INF: FPGA: Recv ZSGSRD 35494
17-03-18 02:48:59.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.884 -07 000000590 INF: FPGA: Recv ZSGSRD 35493
17-03-18 02:48:59.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.894 -07 000000462 INF: FPGA: Recv ZSGSRD 35497
17-03-18 02:48:59.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.904 -07 000000430 INF: FPGA: Recv ZSGSRD 35495
17-03-18 02:48:59.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.914 -07 000000626 INF: FPGA: Recv ZSGSRD 35500
17-03-18 02:48:59.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.924 -07 000000606 INF: FPGA: Recv ZSGSRD 35492
17-03-18 02:48:59.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.934 -07 000000502 INF: FPGA: Recv ZSGSRD 35495
17-03-18 02:48:59.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:48:59.944 -07 000000512 INF: FPGA: Recv ZSGSRD 35499
17-03-18 02:48:59.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:48:59.954 -07 000000561 INF: FPGA: Recv ZPIEZORD 31272
17-03-18 02:48:59.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:48:59.964 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.612 V. Piezo Error = -9.3 V.
17-03-18 02:48:59.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35497 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35496 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35492 (-167.5 uncal um), Max = 35504 (-167.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:48:59.964 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35497, posNoise = 7, negNoise = 5
17-03-18 02:48:59.964 -07 000000610 INF: Z Motor: After move to -0.168345, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:48:59.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:48:59.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:48:59.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:48:59.964 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:48:59.964 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:48:59.964 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:48:59.964 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:48:59.964 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:48:59.964 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:48:59.964 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:48:59.964 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:48:59.964 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:48:59.964 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:48:59.974 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:48:59.974 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:48:59.974 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:48:59.974 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:48:59.974 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:48:59.974 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:48:59.984 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:48:59.984 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:48:59.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36951 150\n [Camera]
17-03-18 02:49:00.184 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:00.584 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:00.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:00.584 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:00.584 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:00.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:00.584 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:00.584 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:00.584 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:49:00.594 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:00.594 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:49:00.774 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36951 783
17-03-18 02:49:00.924 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:00.964 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:49:00.964 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:49:00.964 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:00.964 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:49:00.964 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:49:00.964 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:00.964 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:00.964 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:00.964 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:49:00.974 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:49:01.114 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:01.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:01.114 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:01.114 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:01.114 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:49:01.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:01.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:01.114 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:01.114 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:01.124 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:49:01.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:01.304 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:01.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36951 150' command took 4 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:49:01.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:49:01.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168363610407224. ------
17-03-18 02:49:01.314 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17467 mm
17-03-18 02:49:01.314 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:01.314 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:01.314 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38157, sync = True, waitForSettling = False)
17-03-18 02:49:01.314 -07 000000626 INF: Z Motor: Moving to -0.174672 mm, started at -0.168364 mm, distance = -6.31 um
17-03-18 02:49:01.314 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:49:01.314 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 02:49:01.314 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:01.324 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:01.324 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:01.324 -07 000000576 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:49:01.334 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:49:01.334 -07 000000462 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:01.334 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:01.334 -07 000000462 INF: Y Motor: Moving 1353 steps-33
17-03-18 02:49:01.334 -07 000000626 INF: FPGA: Xmit ZDACW 38157\n [Z Motor]
17-03-18 02:49:01.334 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:49:01.344 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:01.344 -07 000000626 INF: FPGA: 'ZDACW 38157' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:49:01.354 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:01.364 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:01.364 -07 000000424 INF: FPGA: Recv ZDACR 38157
17-03-18 02:49:01.374 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:49:01.374 -07 000000626 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:49:01.504 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:49:01.504 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:49:01.504 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:01.504 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:49:01.504 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:49:01.504 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:01.514 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:01.514 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:01.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:01.514 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:49:01.514 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:49:01.524 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:49:01.544 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:01.544 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:49:01.724 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:49:01.724 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:49:01.774 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:01.774 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:49:01.784 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:01.784 -07 000000462 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:01.784 -07 000000462 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:49:01.784 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-18 02:49:02.734 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:02.734 -07 000000626 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:49:02.744 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.744 -07 000000462 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:02.764 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:02.764 -07 000000462 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:49:02.764 -07 000000462 INF: Y Motor: Moved to 69.8628 after 1451 ms (table move)
17-03-18 02:49:02.774 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174672 mm (DAC = 38157)
17-03-18 02:49:02.774 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.774 -07 000000569 INF: FPGA: Recv ZSGSRD 36491
17-03-18 02:49:02.784 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:49:02.784 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.784 -07 000000590 INF: FPGA: Recv ZSGSRD 36481
17-03-18 02:49:02.794 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.794 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.794 -07 000000579 INF: FPGA: Recv ZSGSRD 36483
17-03-18 02:49:02.804 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.804 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.804 -07 000000576 INF: FPGA: Recv ZSGSRD 36478
17-03-18 02:49:02.814 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.814 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.814 -07 000000444 INF: FPGA: Recv ZSGSRD 36482
17-03-18 02:49:02.824 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.824 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.824 -07 000000569 INF: FPGA: Recv ZSGSRD 36474
17-03-18 02:49:02.834 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.834 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.834 -07 000000424 INF: FPGA: Recv ZSGSRD 36475
17-03-18 02:49:02.844 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.844 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.844 -07 000000579 INF: FPGA: Recv ZSGSRD 36481
17-03-18 02:49:02.854 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.854 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.854 -07 000000576 INF: FPGA: Recv ZSGSRD 36482
17-03-18 02:49:02.864 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.864 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:02.864 -07 000000591 INF: FPGA: Recv ZSGSRD 36481
17-03-18 02:49:02.874 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.874 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:02.874 -07 000000618 INF: FPGA: Recv ZPIEZORD 32578
17-03-18 02:49:02.884 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:02.884 -07 000000467 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.6 V.
17-03-18 02:49:02.884 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36481 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36481 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36474 (-173.8 uncal um), Max = 36491 (-173.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:02.884 -07 000000467 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36481, posNoise = 10, negNoise = 7
17-03-18 02:49:02.884 -07 000000467 INF: Z Motor: After move to -0.174672, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:02.884 -07 000000467 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:49:02.884 -07 000000467 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:02.934 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-18 02:49:02.934 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:02.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:02.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:02.934 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:02.934 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:02.934 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:02.934 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:02.934 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:02.934 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:02.944 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:02.944 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:02.954 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:49:02.954 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:49:02.954 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:03.004 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:03.304 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:03.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:03.304 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:03.304 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 02:49:03.344 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:03.344 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:03.344 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 386 ms overall
17-03-18 02:49:03.424 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:49:03.424 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:03.424 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:49:03.424 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:49:03.444 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:03.444 -07 000000424 INF: Autofocus start
17-03-18 02:49:03.444 -07 000000424 INF: MeasureProfile start
17-03-18 02:49:03.454 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:03.454 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 02:49:03.454 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:03.454 -07 000000424 INF: MeasureProfile done
17-03-18 02:49:03.454 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:49:03.454 -07 000000424 INF: Autofocus finished
17-03-18 02:49:03.654 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:03.654 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:49:03.664 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174685035154716. ----------
17-03-18 02:49:03.664 -07 000000610 INF: Cycle	104	Tile	13	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:03.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36689, sync = True, waitForSettling = True)
17-03-18 02:49:03.674 -07 000000610 INF: Z Motor: Moving to -0.167951 mm, started at -0.174685 mm, distance = 6.73 um
17-03-18 02:49:03.684 -07 000000610 INF: FPGA: Xmit ZDACW 36689\n [Z Motor]
17-03-18 02:49:03.684 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:49:03.694 -07 000000610 INF: FPGA: 'ZDACW 36689' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:49:03.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:03.694 -07 000000467 INF: FPGA: Recv ZDACR 36689
17-03-18 02:49:03.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:03.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.854 -07 000000561 INF: FPGA: Recv ZSGSRD 35432
17-03-18 02:49:03.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:03.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.864 -07 000000502 INF: FPGA: Recv ZSGSRD 35441
17-03-18 02:49:03.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.874 -07 000000424 INF: FPGA: Recv ZSGSRD 35435
17-03-18 02:49:03.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35431
17-03-18 02:49:03.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.894 -07 000000501 INF: FPGA: Recv ZSGSRD 35439
17-03-18 02:49:03.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.904 -07 000000618 INF: FPGA: Recv ZSGSRD 35430
17-03-18 02:49:03.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.914 -07 000000576 INF: FPGA: Recv ZSGSRD 35432
17-03-18 02:49:03.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.924 -07 000000579 INF: FPGA: Recv ZSGSRD 35431
17-03-18 02:49:03.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.934 -07 000000461 INF: FPGA: Recv ZSGSRD 35432
17-03-18 02:49:03.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:03.944 -07 000000626 INF: FPGA: Recv ZSGSRD 35440
17-03-18 02:49:03.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:03.954 -07 000000606 INF: FPGA: Recv ZPIEZORD 31159
17-03-18 02:49:03.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:03.964 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.4 V.
17-03-18 02:49:03.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35434 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35432 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35430 (-167.1 uncal um), Max = 35441 (-167.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:49:03.964 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35434, posNoise = 7, negNoise = 4
17-03-18 02:49:03.964 -07 000000610 INF: Z Motor: After move to -0.167951, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:03.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:49:03.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:03.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:03.964 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:03.964 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:03.964 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:03.964 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:03.964 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:03.964 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:03.964 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:03.964 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:03.964 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:49:03.964 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:03.974 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:03.974 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:03.974 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:49:03.974 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:03.984 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:49:03.984 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:49:03.984 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:49:03.984 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:49:03.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36866 150\n [Camera]
17-03-18 02:49:04.184 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:04.384 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.98264,
17-03-18 02:49:04.584 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:04.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:04.584 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:04.584 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:04.584 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:49:04.594 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:04.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:04.594 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:04.594 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:04.594 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:49:04.784 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36866 783
17-03-18 02:49:04.934 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:04.974 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:49:04.974 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:49:04.974 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:04.974 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:49:04.974 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:49:04.974 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:04.974 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:04.974 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:49:04.974 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:04.984 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:49:05.124 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:05.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:05.124 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:05.124 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:05.124 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:49:05.124 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:05.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:05.124 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:05.124 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:05.124 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:49:05.314 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:05.314 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:05.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36866 150' command took 2 ms to send, 1314 ms to get response, and 1330 ms overall
17-03-18 02:49:05.314 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:49:05.314 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167958885042293. ------
17-03-18 02:49:05.444 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:05.444 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17395 mm
17-03-18 02:49:05.444 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:05.444 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:49:05.444 -07 000000576 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 02:49:05.444 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:05.444 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 38000, sync = True, waitForSettling = False)
17-03-18 02:49:05.444 -07 000000461 INF: Z Motor: Moving to -0.173953 mm, started at -0.167959 mm, distance = -5.99 um
17-03-18 02:49:05.454 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:05.454 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:05.454 -07 000000591 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:49:05.464 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:49:05.464 -07 000000461 INF: FPGA: Xmit ZDACW 38000\n [Z Motor]
17-03-18 02:49:05.464 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:05.464 -07 000000576 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:05.464 -07 000000576 INF: Y Motor: Moving 1344 steps-20
17-03-18 02:49:05.464 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:49:05.474 -07 000000461 INF: FPGA: 'ZDACW 38000' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:49:05.474 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:05.484 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:05.494 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:05.494 -07 000000626 INF: FPGA: Recv ZDACR 38000
17-03-18 02:49:05.504 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:49:05.504 -07 000000461 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:49:05.524 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 02:49:05.524 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:49:05.524 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:05.524 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:49:05.524 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:05.524 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:49:05.524 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:05.534 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:49:05.534 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:49:05.534 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:49:05.674 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:05.674 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:49:05.854 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:49:05.854 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:49:05.904 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:05.904 -07 000000461 INF: FPGA: Recv YRDPOS 144768
17-03-18 02:49:05.914 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:05.914 -07 000000576 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:05.914 -07 000000576 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:49:05.914 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 02:49:06.514 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:06.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:06.864 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:06.864 -07 000000590 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:49:06.874 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:06.874 -07 000000576 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:06.914 -07 000000576 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:06.914 -07 000000576 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:49:06.914 -07 000000576 INF: Y Motor: Moved to 70.6880 after 1465 ms (table move)
17-03-18 02:49:06.914 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173953 mm (DAC = 38000)
17-03-18 02:49:06.914 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:06.914 -07 000000626 INF: FPGA: Recv ZSGSRD 36368
17-03-18 02:49:06.924 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:06.924 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:06.924 -07 000000461 INF: FPGA: Recv ZSGSRD 36370
17-03-18 02:49:06.934 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:06.934 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:06.934 -07 000000467 INF: FPGA: Recv ZSGSRD 36369
17-03-18 02:49:06.944 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:06.944 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:06.944 -07 000000502 INF: FPGA: Recv ZSGSRD 36368
17-03-18 02:49:06.954 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:06.954 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:06.954 -07 000000424 INF: FPGA: Recv ZSGSRD 36366
17-03-18 02:49:06.964 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:06.964 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:06.964 -07 000000579 INF: FPGA: Recv ZSGSRD 36371
17-03-18 02:49:06.974 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:06.974 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:06.974 -07 000000576 INF: FPGA: Recv ZSGSRD 36368
17-03-18 02:49:06.984 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:06.984 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:06.984 -07 000000467 INF: FPGA: Recv ZSGSRD 36367
17-03-18 02:49:06.994 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:06.994 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:06.994 -07 000000512 INF: FPGA: Recv ZSGSRD 36373
17-03-18 02:49:07.004 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:07.004 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:07.004 -07 000000455 INF: FPGA: Recv ZSGSRD 36368
17-03-18 02:49:07.014 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:07.014 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:07.014 -07 000000461 INF: FPGA: Recv ZPIEZORD 32465
17-03-18 02:49:07.024 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:07.024 -07 000000629 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.6 V.
17-03-18 02:49:07.024 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36369 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36368 (-173.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36366 (-173.1 uncal um), Max = 36373 (-173.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:49:07.024 -07 000000629 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36369, posNoise = 4, negNoise = 3
17-03-18 02:49:07.024 -07 000000629 INF: Z Motor: After move to -0.173953, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:07.024 -07 000000629 INF: Z Motor: Settle wait time = 1468 ms, measure time = 105 ms (allowed 150 ms), total time = 1573 ms
17-03-18 02:49:07.024 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:07.074 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 02:49:07.074 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:07.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:07.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:07.074 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:07.074 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:07.074 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:07.074 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:07.074 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:07.074 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:07.084 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:07.084 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:07.084 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:49:07.084 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:49:07.094 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:07.134 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:07.434 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:07.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:07.434 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:07.434 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:49:07.474 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:07.474 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:07.474 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:49:07.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:49:07.554 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:07.554 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:49:07.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:49:07.574 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:07.574 -07 000000606 INF: Autofocus start
17-03-18 02:49:07.574 -07 000000606 INF: MeasureProfile start
17-03-18 02:49:07.574 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:07.584 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:07.584 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:07.594 -07 000000606 INF: MeasureProfile done
17-03-18 02:49:07.594 -07 000000606 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:49:07.594 -07 000000606 INF: Autofocus finished
17-03-18 02:49:07.784 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:07.784 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:07.794 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173965523394839. ----------
17-03-18 02:49:07.794 -07 000000610 INF: Cycle	104	Tile	14	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:07.794 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36480, sync = True, waitForSettling = True)
17-03-18 02:49:07.794 -07 000000610 INF: Z Motor: Moving to -0.166995 mm, started at -0.173966 mm, distance = 6.97 um
17-03-18 02:49:07.794 -07 000000610 INF: FPGA: Xmit ZDACW 36480\n [Z Motor]
17-03-18 02:49:07.794 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:49:07.804 -07 000000610 INF: FPGA: 'ZDACW 36480' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:07.804 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:07.804 -07 000000462 INF: FPGA: Recv ZDACR 36480
17-03-18 02:49:07.814 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:07.814 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:07.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:07.964 -07 000000590 INF: FPGA: Recv ZSGSRD 35291
17-03-18 02:49:07.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:07.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:07.974 -07 000000618 INF: FPGA: Recv ZSGSRD 35291
17-03-18 02:49:07.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:07.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:07.984 -07 000000591 INF: FPGA: Recv ZSGSRD 35286
17-03-18 02:49:07.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:07.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:07.994 -07 000000461 INF: FPGA: Recv ZSGSRD 35286
17-03-18 02:49:08.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:08.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:08.004 -07 000000455 INF: FPGA: Recv ZSGSRD 35284
17-03-18 02:49:08.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:08.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:08.014 -07 000000579 INF: FPGA: Recv ZSGSRD 35284
17-03-18 02:49:08.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:08.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:08.024 -07 000000606 INF: FPGA: Recv ZSGSRD 35289
17-03-18 02:49:08.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:08.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:08.034 -07 000000591 INF: FPGA: Recv ZSGSRD 35287
17-03-18 02:49:08.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:08.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:08.044 -07 000000576 INF: FPGA: Recv ZSGSRD 35288
17-03-18 02:49:08.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:08.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:08.054 -07 000000501 INF: FPGA: Recv ZSGSRD 35290
17-03-18 02:49:08.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:08.064 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:08.064 -07 000000590 INF: FPGA: Recv ZPIEZORD 31005
17-03-18 02:49:08.074 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:08.074 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.4 V.
17-03-18 02:49:08.074 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35288 (-166.2 uncal um), Error = 0.8 uncal um, Median = 35288 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35284 (-166.1 uncal um), Max = 35291 (-166.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:49:08.074 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35288, posNoise = 3, negNoise = 4
17-03-18 02:49:08.074 -07 000000610 INF: Z Motor: After move to -0.166995, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:08.074 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:49:08.074 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:08.074 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:08.074 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:08.074 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:08.074 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:08.074 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:08.074 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:08.074 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:08.074 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:49:08.074 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:08.074 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:08.074 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:08.084 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:08.084 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:08.084 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:49:08.084 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:08.094 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:49:08.094 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:49:08.094 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:49:08.094 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:49:08.094 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36657 150\n [Camera]
17-03-18 02:49:08.294 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:08.694 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:08.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:08.694 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:08.694 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:08.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:08.694 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:08.694 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:08.694 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:49:08.704 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:08.704 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:49:08.884 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36657 783
17-03-18 02:49:09.034 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:09.094 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:49:09.094 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:49:09.094 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:09.094 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:49:09.094 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:49:09.094 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:09.094 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:09.094 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:49:09.094 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:09.104 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:49:09.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:09.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:09.224 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:09.224 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:09.224 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:09.224 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:09.224 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:09.224 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:49:09.234 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:09.234 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:49:09.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:09.414 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:09.414 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36657 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:49:09.414 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:49:09.414 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167020950069596. ------
17-03-18 02:49:09.534 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:09.534 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17373 mm
17-03-18 02:49:09.534 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:09.544 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:09.544 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:49:09.544 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37950, sync = True, waitForSettling = False)
17-03-18 02:49:09.544 -07 000000502 INF: Z Motor: Moving to -0.173724 mm, started at -0.167021 mm, distance = -6.70 um
17-03-18 02:49:09.544 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:09.544 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:49:09.544 -07 000000606 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:49:09.554 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:09.554 -07 000000561 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:49:09.564 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:49:09.564 -07 000000606 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:09.564 -07 000000606 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:09.564 -07 000000606 INF: Y Motor: Moving 1351 steps-31
17-03-18 02:49:09.564 -07 000000502 INF: FPGA: Xmit ZDACW 37950\n [Z Motor]
17-03-18 02:49:09.564 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:49:09.574 -07 000000502 INF: FPGA: 'ZDACW 37950' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:49:09.574 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:09.574 -07 000000467 INF: FPGA: Recv ZDACR 37950
17-03-18 02:49:09.584 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:09.584 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:09.584 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:49:09.614 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:49:09.614 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:49:09.614 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:09.614 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:09.614 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:49:09.614 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:49:09.614 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:09.624 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:49:09.624 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:49:09.624 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:49:09.744 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:09.744 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 02:49:09.844 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.003063,
17-03-18 02:49:09.954 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:49:09.954 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:49:10.004 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:10.004 -07 000000424 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:49:10.014 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:10.014 -07 000000606 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:10.014 -07 000000606 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:49:10.014 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 02:49:10.964 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:10.964 -07 000000629 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:49:10.974 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:10.974 -07 000000606 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:10.994 -07 000000606 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:10.994 -07 000000606 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:49:10.994 -07 000000606 INF: Y Motor: Moved to 71.5181 after 1454 ms (table move)
17-03-18 02:49:11.004 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173724 mm (DAC = 37950)
17-03-18 02:49:11.004 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.004 -07 000000569 INF: FPGA: Recv ZSGSRD 36339
17-03-18 02:49:11.014 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:11.014 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.014 -07 000000590 INF: FPGA: Recv ZSGSRD 36337
17-03-18 02:49:11.024 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.024 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.024 -07 000000629 INF: FPGA: Recv ZSGSRD 36337
17-03-18 02:49:11.034 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.034 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.034 -07 000000444 INF: FPGA: Recv ZSGSRD 36335
17-03-18 02:49:11.044 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.044 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.044 -07 000000579 INF: FPGA: Recv ZSGSRD 36337
17-03-18 02:49:11.054 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.054 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.054 -07 000000569 INF: FPGA: Recv ZSGSRD 36343
17-03-18 02:49:11.064 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.064 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.064 -07 000000590 INF: FPGA: Recv ZSGSRD 36337
17-03-18 02:49:11.074 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.074 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.074 -07 000000629 INF: FPGA: Recv ZSGSRD 36330
17-03-18 02:49:11.084 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.084 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.084 -07 000000590 INF: FPGA: Recv ZSGSRD 36335
17-03-18 02:49:11.094 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.094 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:11.094 -07 000000629 INF: FPGA: Recv ZSGSRD 36336
17-03-18 02:49:11.104 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.104 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:11.104 -07 000000455 INF: FPGA: Recv ZPIEZORD 32446
17-03-18 02:49:11.114 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.114 -07 000000512 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.6 V.
17-03-18 02:49:11.114 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36337 (-172.9 uncal um), Error = 0.8 uncal um, Median = 36337 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36330 (-172.8 uncal um), Max = 36343 (-172.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:11.114 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36337, posNoise = 6, negNoise = 7
17-03-18 02:49:11.114 -07 000000512 INF: Z Motor: After move to -0.173724, error = -0.000036, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:11.114 -07 000000512 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:49:11.114 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:11.164 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:49:11.164 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:11.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:11.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:11.164 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:11.164 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:11.164 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:11.164 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:11.164 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:49:11.164 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:11.174 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:11.174 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:11.174 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:49:11.174 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:49:11.184 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:11.224 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:11.514 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:11.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:11.524 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:11.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:11.524 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:11.524 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:49:11.564 -07 000000561 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:11.564 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:11.564 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:49:11.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:49:11.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:11.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:49:11.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:49:11.664 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:11.664 -07 000000591 INF: Autofocus start
17-03-18 02:49:11.664 -07 000000591 INF: MeasureProfile start
17-03-18 02:49:11.664 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:11.674 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:11.674 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:11.674 -07 000000591 INF: MeasureProfile done
17-03-18 02:49:11.674 -07 000000591 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:49:11.674 -07 000000591 INF: Autofocus finished
17-03-18 02:49:11.874 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:11.874 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:11.874 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.173759948606303. ----------
17-03-18 02:49:11.884 -07 000000610 INF: Cycle	104	Tile	15	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:11.884 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36447, sync = True, waitForSettling = True)
17-03-18 02:49:11.884 -07 000000610 INF: Z Motor: Moving to -0.166844 mm, started at -0.173760 mm, distance = 6.92 um
17-03-18 02:49:11.884 -07 000000610 INF: FPGA: Xmit ZDACW 36447\n [Z Motor]
17-03-18 02:49:11.884 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:49:11.894 -07 000000610 INF: FPGA: 'ZDACW 36447' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:11.894 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:11.894 -07 000000461 INF: FPGA: Recv ZDACR 36447
17-03-18 02:49:11.904 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:11.904 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:12.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.054 -07 000000501 INF: FPGA: Recv ZSGSRD 35266
17-03-18 02:49:12.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:12.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.064 -07 000000591 INF: FPGA: Recv ZSGSRD 35261
17-03-18 02:49:12.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.074 -07 000000561 INF: FPGA: Recv ZSGSRD 35260
17-03-18 02:49:12.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.084 -07 000000629 INF: FPGA: Recv ZSGSRD 35259
17-03-18 02:49:12.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.094 -07 000000512 INF: FPGA: Recv ZSGSRD 35263
17-03-18 02:49:12.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.104 -07 000000590 INF: FPGA: Recv ZSGSRD 35263
17-03-18 02:49:12.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.114 -07 000000444 INF: FPGA: Recv ZSGSRD 35263
17-03-18 02:49:12.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.124 -07 000000462 INF: FPGA: Recv ZSGSRD 35258
17-03-18 02:49:12.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.134 -07 000000461 INF: FPGA: Recv ZSGSRD 35265
17-03-18 02:49:12.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:12.144 -07 000000561 INF: FPGA: Recv ZSGSRD 35270
17-03-18 02:49:12.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:12.154 -07 000000629 INF: FPGA: Recv ZPIEZORD 30962
17-03-18 02:49:12.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:12.164 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.5 V.
17-03-18 02:49:12.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35263 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35263 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35258 (-166.0 uncal um), Max = 35270 (-166.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:49:12.164 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35263, posNoise = 7, negNoise = 5
17-03-18 02:49:12.164 -07 000000610 INF: Z Motor: After move to -0.166844, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:12.164 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:49:12.164 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:12.164 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:12.164 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:12.164 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:12.164 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:12.164 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:12.174 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:12.174 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:12.174 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:12.174 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:12.174 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:12.174 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:12.174 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:12.174 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:12.174 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:49:12.174 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:12.184 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:49:12.184 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:49:12.184 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:49:12.184 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:49:12.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36624 150\n [Camera]
17-03-18 02:49:12.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:12.784 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:12.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:12.784 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:12.784 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:12.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:12.794 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:12.794 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:12.794 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:49:12.794 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:12.794 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:49:12.974 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36624 783
17-03-18 02:49:13.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:13.174 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:49:13.174 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:49:13.174 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:13.174 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:49:13.174 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:49:13.174 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:13.174 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:13.174 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:13.174 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:49:13.184 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:49:13.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:13.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:13.324 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:13.324 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:13.324 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:49:13.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:13.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:13.324 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:13.324 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:13.324 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 02:49:13.514 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:13.514 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:13.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36624 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-18 02:49:13.514 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:49:13.514 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.166860344766052. ------
17-03-18 02:49:13.514 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:13.524 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17326 mm
17-03-18 02:49:13.524 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:13.524 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:13.524 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:49:13.524 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37849, sync = True, waitForSettling = False)
17-03-18 02:49:13.524 -07 000000579 INF: Z Motor: Moving to -0.173262 mm, started at -0.166860 mm, distance = -6.40 um
17-03-18 02:49:13.524 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:13.524 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:49:13.524 -07 000000591 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 02:49:13.534 -07 000000579 INF: FPGA: Xmit ZDACW 37849\n [Z Motor]
17-03-18 02:49:13.534 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:49:13.544 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:13.544 -07 000000579 INF: FPGA: 'ZDACW 37849' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:49:13.544 -07 000000462 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:49:13.554 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:49:13.554 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:13.554 -07 000000591 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:13.554 -07 000000461 INF: FPGA: Recv ZDACR 37849
17-03-18 02:49:13.554 -07 000000591 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:13.554 -07 000000591 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:49:13.564 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:49:13.564 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:13.564 -07 000000579 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:49:13.724 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:49:13.724 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:49:13.724 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:13.724 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:49:13.724 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:49:13.724 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:13.724 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:13.724 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 02:49:13.724 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:13.734 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:49:13.734 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:49:13.734 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:49:13.944 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:49:13.944 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 385 ms overall
17-03-18 02:49:13.984 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:13.984 -07 000000444 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:49:13.994 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:49:13.994 -07 000000591 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:13.994 -07 000000591 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:49:13.994 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-18 02:49:14.944 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:14.944 -07 000000501 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:49:14.954 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:14.954 -07 000000591 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:14.974 -07 000000591 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:14.974 -07 000000591 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:49:14.974 -07 000000591 INF: Y Motor: Moved to 72.3491 after 1455 ms (table move)
17-03-18 02:49:14.984 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173262 mm (DAC = 37849)
17-03-18 02:49:14.984 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:14.984 -07 000000444 INF: FPGA: Recv ZSGSRD 36261
17-03-18 02:49:14.994 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:14.994 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:14.994 -07 000000579 INF: FPGA: Recv ZSGSRD 36261
17-03-18 02:49:15.004 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.004 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:15.004 -07 000000462 INF: FPGA: Recv ZSGSRD 36257
17-03-18 02:49:15.014 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.014 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:15.014 -07 000000461 INF: FPGA: Recv ZSGSRD 36262
17-03-18 02:49:15.024 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.024 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:15.024 -07 000000591 INF: FPGA: Recv ZSGSRD 36265
17-03-18 02:49:15.034 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.034 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:15.034 -07 000000444 INF: FPGA: Recv ZSGSRD 36260
17-03-18 02:49:15.044 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.044 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:15.044 -07 000000590 INF: FPGA: Recv ZSGSRD 36270
17-03-18 02:49:15.054 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.054 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:15.054 -07 000000462 INF: FPGA: Recv ZSGSRD 36261
17-03-18 02:49:15.064 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.064 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:15.064 -07 000000461 INF: FPGA: Recv ZSGSRD 36268
17-03-18 02:49:15.074 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.074 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:15.074 -07 000000579 INF: FPGA: Recv ZSGSRD 36258
17-03-18 02:49:15.084 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.084 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:15.084 -07 000000424 INF: FPGA: Recv ZPIEZORD 32302
17-03-18 02:49:15.094 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.094 -07 000000430 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.775 V. Piezo Error = -8.7 V.
17-03-18 02:49:15.094 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36262 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36261 (-172.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36257 (-172.4 uncal um), Max = 36270 (-172.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:49:15.094 -07 000000430 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36262, posNoise = 8, negNoise = 5
17-03-18 02:49:15.094 -07 000000430 INF: Z Motor: After move to -0.173262, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:15.094 -07 000000430 INF: Z Motor: Settle wait time = 1459 ms, measure time = 108 ms (allowed 150 ms), total time = 1567 ms
17-03-18 02:49:15.094 -07 000000430 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:15.144 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:49:15.144 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:15.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:15.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:15.144 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:15.144 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:15.144 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:15.144 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:15.144 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:15.144 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:15.154 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:15.154 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:15.154 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:49:15.154 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:49:15.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:15.204 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.009895,
17-03-18 02:49:15.204 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:15.504 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:15.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:15.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:15.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 02:49:15.544 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:15.544 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:15.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 02:49:15.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:49:15.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:15.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:49:15.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:49:15.644 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:15.644 -07 000000618 INF: Autofocus start
17-03-18 02:49:15.644 -07 000000618 INF: MeasureProfile start
17-03-18 02:49:15.644 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:15.654 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:15.654 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:15.664 -07 000000618 INF: MeasureProfile done
17-03-18 02:49:15.664 -07 000000618 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:49:15.664 -07 000000618 INF: Autofocus finished
17-03-18 02:49:15.854 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:15.854 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 02:49:15.854 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173278132695671. ----------
17-03-18 02:49:15.854 -07 000000610 INF: Cycle	104	Tile	16	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:15.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36346, sync = True, waitForSettling = True)
17-03-18 02:49:15.864 -07 000000610 INF: Z Motor: Moving to -0.166381 mm, started at -0.173278 mm, distance = 6.90 um
17-03-18 02:49:15.864 -07 000000610 INF: FPGA: Xmit ZDACW 36346\n [Z Motor]
17-03-18 02:49:15.864 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:49:15.874 -07 000000610 INF: FPGA: 'ZDACW 36346' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:15.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:15.874 -07 000000455 INF: FPGA: Recv ZDACR 36346
17-03-18 02:49:15.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:15.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:16.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.034 -07 000000502 INF: FPGA: Recv ZSGSRD 35183
17-03-18 02:49:16.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:16.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.044 -07 000000467 INF: FPGA: Recv ZSGSRD 35193
17-03-18 02:49:16.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.054 -07 000000590 INF: FPGA: Recv ZSGSRD 35192
17-03-18 02:49:16.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.064 -07 000000576 INF: FPGA: Recv ZSGSRD 35192
17-03-18 02:49:16.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.074 -07 000000579 INF: FPGA: Recv ZSGSRD 35191
17-03-18 02:49:16.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.084 -07 000000430 INF: FPGA: Recv ZSGSRD 35191
17-03-18 02:49:16.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.094 -07 000000591 INF: FPGA: Recv ZSGSRD 35194
17-03-18 02:49:16.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.104 -07 000000618 INF: FPGA: Recv ZSGSRD 35187
17-03-18 02:49:16.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.114 -07 000000502 INF: FPGA: Recv ZSGSRD 35189
17-03-18 02:49:16.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:16.124 -07 000000512 INF: FPGA: Recv ZSGSRD 35187
17-03-18 02:49:16.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:16.134 -07 000000461 INF: FPGA: Recv ZPIEZORD 30877
17-03-18 02:49:16.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:16.144 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.5 V.
17-03-18 02:49:16.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35190 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35191 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35183 (-165.5 uncal um), Max = 35194 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:16.144 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35190, posNoise = 4, negNoise = 7
17-03-18 02:49:16.144 -07 000000610 INF: Z Motor: After move to -0.166381, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:16.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:49:16.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:16.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:16.144 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:16.144 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:16.144 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:16.144 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:16.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:16.144 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:16.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:16.144 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:16.144 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:16.144 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:16.154 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:49:16.154 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:16.154 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:16.154 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:16.154 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:49:16.154 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:49:16.154 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:49:16.154 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:49:16.164 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36523 150\n [Camera]
17-03-18 02:49:16.364 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:16.514 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:16.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:16.764 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:16.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:16.764 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:16.764 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:16.764 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) start.
17-03-18 02:49:16.764 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:16.764 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:16.764 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:16.764 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:16.764 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:49:16.954 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36523 785
17-03-18 02:49:17.104 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:17.164 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:49:17.164 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:49:17.164 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:17.164 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:17.164 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:49:17.164 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:49:17.164 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:49:17.164 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:17.174 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:17.174 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:49:17.294 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:17.294 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:17.294 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:17.294 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:17.294 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:49:17.294 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:17.294 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:17.294 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:17.294 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:17.294 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:49:17.484 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:17.484 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:17.484 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36523 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:49:17.614 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:49:17.614 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166391377279703. ------
17-03-18 02:49:17.614 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:17.614 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17289 mm
17-03-18 02:49:17.614 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:17.614 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:49:17.614 -07 000000462 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:49:17.614 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:17.614 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37768, sync = True, waitForSettling = False)
17-03-18 02:49:17.624 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:49:17.624 -07 000000618 INF: Z Motor: Moving to -0.172891 mm, started at -0.166391 mm, distance = -6.50 um
17-03-18 02:49:17.624 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:17.624 -07 000000467 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:49:17.634 -07 000000462 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:17.634 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:17.634 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:17.634 -07 000000462 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:17.634 -07 000000462 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:49:17.644 -07 000000618 INF: FPGA: Xmit ZDACW 37768\n [Z Motor]
17-03-18 02:49:17.644 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:49:17.654 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:17.654 -07 000000618 INF: FPGA: 'ZDACW 37768' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:49:17.664 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:17.664 -07 000000561 INF: FPGA: Recv ZDACR 37768
17-03-18 02:49:17.674 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:49:17.674 -07 000000618 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:49:17.704 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:49:17.704 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:49:17.704 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:17.704 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:49:17.704 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:49:17.704 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:17.704 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:17.704 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:49:17.714 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-18 02:49:17.714 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:49:17.834 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:17.834 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 02:49:18.034 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:49:18.034 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 395 ms overall
17-03-18 02:49:18.074 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:18.074 -07 000000501 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:49:18.084 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:18.084 -07 000000462 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:18.084 -07 000000462 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 02:49:18.084 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.130 mm/sec
17-03-18 02:49:19.034 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:19.034 -07 000000455 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:49:19.044 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:19.044 -07 000000462 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:19.064 -07 000000462 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:19.064 -07 000000462 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:49:19.064 -07 000000462 INF: Y Motor: Moved to 73.1758 after 1449 ms (table move)
17-03-18 02:49:19.074 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172891 mm (DAC = 37768)
17-03-18 02:49:19.074 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.074 -07 000000561 INF: FPGA: Recv ZSGSRD 36204
17-03-18 02:49:19.084 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:19.084 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.084 -07 000000424 INF: FPGA: Recv ZSGSRD 36203
17-03-18 02:49:19.094 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.094 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.094 -07 000000576 INF: FPGA: Recv ZSGSRD 36199
17-03-18 02:49:19.104 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.104 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.104 -07 000000461 INF: FPGA: Recv ZSGSRD 36204
17-03-18 02:49:19.114 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.114 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.114 -07 000000444 INF: FPGA: Recv ZSGSRD 36195
17-03-18 02:49:19.124 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.124 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.124 -07 000000502 INF: FPGA: Recv ZSGSRD 36205
17-03-18 02:49:19.134 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.134 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.134 -07 000000424 INF: FPGA: Recv ZSGSRD 36209
17-03-18 02:49:19.144 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.144 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.144 -07 000000576 INF: FPGA: Recv ZSGSRD 36205
17-03-18 02:49:19.154 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.154 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.154 -07 000000626 INF: FPGA: Recv ZSGSRD 36193
17-03-18 02:49:19.164 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.164 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:19.164 -07 000000444 INF: FPGA: Recv ZSGSRD 36205
17-03-18 02:49:19.174 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.174 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:19.174 -07 000000462 INF: FPGA: Recv ZPIEZORD 32253
17-03-18 02:49:19.184 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.184 -07 000000430 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.7 V.
17-03-18 02:49:19.184 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36202 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36204 (-172.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36193 (-172.0 uncal um), Max = 36209 (-172.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:49:19.184 -07 000000430 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36202, posNoise = 7, negNoise = 9
17-03-18 02:49:19.184 -07 000000430 INF: Z Motor: After move to -0.172891, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:19.184 -07 000000430 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-18 02:49:19.184 -07 000000430 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:19.234 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:49:19.234 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:19.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:19.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:19.234 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:19.234 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:19.234 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:19.234 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:19.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:19.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:19.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:19.244 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:19.244 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:49:19.254 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:49:19.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:19.294 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:19.594 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:19.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:19.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:19.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:49:19.634 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:19.634 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:19.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:49:19.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:49:19.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:19.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:49:19.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:49:19.734 -07 000000444 INF: Autofocus start
17-03-18 02:49:19.734 -07 000000444 INF: MeasureProfile start
17-03-18 02:49:19.734 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:19.734 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:19.744 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:19.744 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:19.744 -07 000000444 INF: MeasureProfile done
17-03-18 02:49:19.744 -07 000000444 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:49:19.744 -07 000000444 INF: Autofocus finished
17-03-18 02:49:19.944 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:19.944 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:19.944 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.172892679967165. ----------
17-03-18 02:49:19.954 -07 000000610 INF: Cycle	104	Tile	17	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:19.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36283, sync = True, waitForSettling = True)
17-03-18 02:49:19.954 -07 000000610 INF: Z Motor: Moving to -0.166093 mm, started at -0.172893 mm, distance = 6.80 um
17-03-18 02:49:19.954 -07 000000610 INF: FPGA: Xmit ZDACW 36283\n [Z Motor]
17-03-18 02:49:19.954 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:49:19.964 -07 000000610 INF: FPGA: 'ZDACW 36283' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:19.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:19.964 -07 000000467 INF: FPGA: Recv ZDACR 36283
17-03-18 02:49:19.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:19.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:20.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.124 -07 000000626 INF: FPGA: Recv ZSGSRD 35140
17-03-18 02:49:20.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:20.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.134 -07 000000579 INF: FPGA: Recv ZSGSRD 35145
17-03-18 02:49:20.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:20.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.144 -07 000000629 INF: FPGA: Recv ZSGSRD 35147
17-03-18 02:49:20.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:20.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.154 -07 000000502 INF: FPGA: Recv ZSGSRD 35144
17-03-18 02:49:20.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:49:20.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.164 -07 000000461 INF: FPGA: Recv ZSGSRD 35148
17-03-18 02:49:20.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:20.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.174 -07 000000501 INF: FPGA: Recv ZSGSRD 35144
17-03-18 02:49:20.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:20.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.184 -07 000000512 INF: FPGA: Recv ZSGSRD 35147
17-03-18 02:49:20.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:20.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.194 -07 000000590 INF: FPGA: Recv ZSGSRD 35148
17-03-18 02:49:20.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:20.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.204 -07 000000626 INF: FPGA: Recv ZSGSRD 35141
17-03-18 02:49:20.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:20.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:20.214 -07 000000430 INF: FPGA: Recv ZSGSRD 35142
17-03-18 02:49:20.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:20.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:20.224 -07 000000618 INF: FPGA: Recv ZPIEZORD 30810
17-03-18 02:49:20.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:20.234 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.536 V. Piezo Error = -9.5 V.
17-03-18 02:49:20.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35145 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35144 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35140 (-165.2 uncal um), Max = 35148 (-165.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:49:20.234 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35145, posNoise = 3, negNoise = 5
17-03-18 02:49:20.234 -07 000000610 INF: Z Motor: After move to -0.166093, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:20.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:49:20.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:20.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:20.234 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:20.234 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:20.234 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:20.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:20.234 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:20.234 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:20.234 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:20.234 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:20.234 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:20.234 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:20.244 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:49:20.244 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:20.244 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:20.244 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:20.244 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:49:20.244 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:49:20.254 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:49:20.254 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:49:20.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36460 150\n [Camera]
17-03-18 02:49:20.454 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 02:49:20.564 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.019446,
17-03-18 02:49:20.854 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:20.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:20.854 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:20.854 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:20.854 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:20.854 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:49:20.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:20.854 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:20.864 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:20.864 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:49:21.044 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36460 783
17-03-18 02:49:21.194 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:21.234 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:49:21.234 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:49:21.234 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:21.234 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:49:21.234 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:21.234 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:49:21.234 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:49:21.234 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:21.244 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:21.254 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:49:21.384 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:21.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:21.384 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:21.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:21.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:21.394 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:21.394 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:21.394 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:49:21.394 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:21.394 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:49:21.514 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:21.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:21.574 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:49:21.574 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:21.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36460 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:49:21.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:49:21.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166102287733324. ------
17-03-18 02:49:21.584 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:21.584 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17244 mm
17-03-18 02:49:21.584 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:21.584 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:21.584 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:49:21.584 -07 000000455 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 02:49:21.584 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37669, sync = True, waitForSettling = False)
17-03-18 02:49:21.584 -07 000000424 INF: Z Motor: Moving to -0.172438 mm, started at -0.166102 mm, distance = -6.34 um
17-03-18 02:49:21.594 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:21.594 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:21.594 -07 000000606 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:49:21.604 -07 000000424 INF: FPGA: Xmit ZDACW 37669\n [Z Motor]
17-03-18 02:49:21.604 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:49:21.604 -07 000000455 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:21.604 -07 000000455 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:21.604 -07 000000455 INF: Y Motor: Moving 1355 steps-35
17-03-18 02:49:21.604 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:49:21.724 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:21.724 -07 000000424 INF: FPGA: 'ZDACW 37669' command took 0 ms to send, 0 ms to get response, and 138 ms overall
17-03-18 02:49:21.734 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:21.744 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:21.744 -07 000000467 INF: FPGA: Recv ZDACR 37669
17-03-18 02:49:21.754 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:49:21.754 -07 000000424 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-18 02:49:21.784 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:49:21.784 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:49:21.784 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:21.784 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:49:21.784 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:49:21.784 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:21.794 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:21.794 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:49:21.794 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:49:21.794 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-18 02:49:21.924 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:21.924 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 116 ms to send, 199 ms to get response, and 338 ms overall
17-03-18 02:49:22.104 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:49:22.104 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 507 ms overall
17-03-18 02:49:22.144 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:22.144 -07 000000467 INF: FPGA: Recv YRDPOS 151567
17-03-18 02:49:22.154 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:49:22.154 -07 000000455 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:22.154 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:49:22.154 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 507 ms, distance = 0.847 mm, average velocity = 1.670 mm/sec
17-03-18 02:49:23.104 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:23.104 -07 000000569 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:49:23.114 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:23.114 -07 000000455 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:23.134 -07 000000455 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:23.134 -07 000000455 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:49:23.134 -07 000000455 INF: Y Motor: Moved to 74.0078 after 1543 ms (table move)
17-03-18 02:49:23.134 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172438 mm (DAC = 37669)
17-03-18 02:49:23.134 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.134 -07 000000424 INF: FPGA: Recv ZSGSRD 36135
17-03-18 02:49:23.144 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:23.144 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.144 -07 000000579 INF: FPGA: Recv ZSGSRD 36132
17-03-18 02:49:23.154 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.154 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.154 -07 000000461 INF: FPGA: Recv ZSGSRD 36132
17-03-18 02:49:23.164 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.164 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.164 -07 000000444 INF: FPGA: Recv ZSGSRD 36138
17-03-18 02:49:23.174 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.174 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.174 -07 000000512 INF: FPGA: Recv ZSGSRD 36135
17-03-18 02:49:23.184 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.184 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.184 -07 000000629 INF: FPGA: Recv ZSGSRD 36138
17-03-18 02:49:23.194 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.194 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.194 -07 000000579 INF: FPGA: Recv ZSGSRD 36131
17-03-18 02:49:23.204 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.204 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.204 -07 000000461 INF: FPGA: Recv ZSGSRD 36126
17-03-18 02:49:23.214 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.214 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.214 -07 000000606 INF: FPGA: Recv ZSGSRD 36138
17-03-18 02:49:23.224 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.224 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:23.224 -07 000000501 INF: FPGA: Recv ZSGSRD 36126
17-03-18 02:49:23.234 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.234 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:23.234 -07 000000629 INF: FPGA: Recv ZPIEZORD 32168
17-03-18 02:49:23.244 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:23.244 -07 000000626 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.748 V. Piezo Error = -8.8 V.
17-03-18 02:49:23.244 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36133 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36134 (-171.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36126 (-171.5 uncal um), Max = 36138 (-171.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:23.244 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36133, posNoise = 5, negNoise = 7
17-03-18 02:49:23.244 -07 000000626 INF: Z Motor: After move to -0.172438, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:23.244 -07 000000626 INF: Z Motor: Settle wait time = 1548 ms, measure time = 104 ms (allowed 150 ms), total time = 1652 ms
17-03-18 02:49:23.244 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:23.294 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1706 ms
17-03-18 02:49:23.294 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:23.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:23.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:23.294 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:23.294 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:23.294 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:23.294 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:23.294 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:49:23.294 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:23.304 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:23.304 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:23.304 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:49:23.304 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:49:23.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:23.354 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 02:49:23.654 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 02:49:23.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 02:49:23.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:23.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:49:23.694 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:23.694 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:23.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:49:23.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:49:23.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:23.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:49:23.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:49:23.794 -07 000000501 INF: Autofocus start
17-03-18 02:49:23.794 -07 000000501 INF: MeasureProfile start
17-03-18 02:49:23.794 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:23.794 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:23.804 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:23.804 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:23.804 -07 000000501 INF: MeasureProfile done
17-03-18 02:49:23.804 -07 000000501 INF: X=48  Z correction [um]=0.1739867
17-03-18 02:49:23.804 -07 000000501 INF: Autofocus finished
17-03-18 02:49:24.004 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:24.004 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:24.004 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172449409329384. ----------
17-03-18 02:49:24.014 -07 000000610 INF: Cycle	104	Tile	18	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:24.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36220, sync = True, waitForSettling = True)
17-03-18 02:49:24.014 -07 000000610 INF: Z Motor: Moving to -0.165805 mm, started at -0.172449 mm, distance = 6.64 um
17-03-18 02:49:24.014 -07 000000610 INF: FPGA: Xmit ZDACW 36220\n [Z Motor]
17-03-18 02:49:24.014 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:49:24.024 -07 000000610 INF: FPGA: 'ZDACW 36220' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:24.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:24.024 -07 000000590 INF: FPGA: Recv ZDACR 36220
17-03-18 02:49:24.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:24.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.184 -07 000000430 INF: FPGA: Recv ZSGSRD 35105
17-03-18 02:49:24.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:24.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.194 -07 000000424 INF: FPGA: Recv ZSGSRD 35101
17-03-18 02:49:24.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.204 -07 000000430 INF: FPGA: Recv ZSGSRD 35104
17-03-18 02:49:24.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.214 -07 000000444 INF: FPGA: Recv ZSGSRD 35097
17-03-18 02:49:24.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.224 -07 000000462 INF: FPGA: Recv ZSGSRD 35095
17-03-18 02:49:24.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.234 -07 000000502 INF: FPGA: Recv ZSGSRD 35106
17-03-18 02:49:24.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.244 -07 000000424 INF: FPGA: Recv ZSGSRD 35093
17-03-18 02:49:24.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.254 -07 000000455 INF: FPGA: Recv ZSGSRD 35103
17-03-18 02:49:24.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.264 -07 000000512 INF: FPGA: Recv ZSGSRD 35100
17-03-18 02:49:24.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:24.274 -07 000000579 INF: FPGA: Recv ZSGSRD 35101
17-03-18 02:49:24.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:24.284 -07 000000618 INF: FPGA: Recv ZPIEZORD 30808
17-03-18 02:49:24.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:24.294 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.5 V.
17-03-18 02:49:24.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35100 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35101 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35093 (-164.9 uncal um), Max = 35106 (-165.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:24.294 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35100, posNoise = 6, negNoise = 7
17-03-18 02:49:24.294 -07 000000610 INF: Z Motor: After move to -0.165805, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:24.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-18 02:49:24.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:24.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:24.304 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:24.304 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:24.304 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:24.304 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:24.304 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:24.304 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:24.304 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:49:24.304 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:24.304 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:24.304 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:24.304 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:49:24.304 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:24.304 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:24.314 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:24.314 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:49:24.314 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:49:24.324 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:49:24.324 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:49:24.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36396 150\n [Camera]
17-03-18 02:49:24.524 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:24.924 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:24.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:24.924 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:24.924 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:24.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:24.924 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:24.924 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:24.924 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:49:24.934 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:24.934 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:49:25.114 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36396 783
17-03-18 02:49:25.264 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:25.324 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:49:25.324 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:49:25.324 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:25.324 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:49:25.324 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:49:25.324 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:25.324 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:25.324 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:49:25.324 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:25.334 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:49:25.454 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:49:25.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:49:25.464 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:25.464 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:25.464 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:49:25.464 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:49:25.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:49:25.464 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:25.464 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:25.464 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:49:25.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:49:25.644 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:25.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36396 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:49:25.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:49:25.654 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.165813198186945. ------
17-03-18 02:49:25.654 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:25.654 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17165 mm
17-03-18 02:49:25.654 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:25.654 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:49:25.654 -07 000000569 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 02:49:25.654 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:25.654 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 37496, sync = True, waitForSettling = False)
17-03-18 02:49:25.654 -07 000000591 INF: Z Motor: Moving to -0.171646 mm, started at -0.165813 mm, distance = -5.83 um
17-03-18 02:49:25.664 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:25.664 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:25.664 -07 000000618 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:49:25.674 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:49:25.674 -07 000000569 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:25.674 -07 000000569 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:25.674 -07 000000569 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:49:25.674 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:25.684 -07 000000591 INF: FPGA: Xmit ZDACW 37496\n [Z Motor]
17-03-18 02:49:25.684 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:49:25.694 -07 000000591 INF: FPGA: 'ZDACW 37496' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:49:25.694 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:25.704 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:25.704 -07 000000512 INF: FPGA: Recv ZDACR 37496
17-03-18 02:49:25.714 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:49:25.714 -07 000000591 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:49:25.864 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:49:25.864 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:49:25.864 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:25.864 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:49:25.864 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:49:25.864 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:25.864 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:25.864 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:49:25.864 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:49:25.874 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:25.874 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 02:49:25.874 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:49:25.924 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.007176,
17-03-18 02:49:26.074 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:49:26.074 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-18 02:49:26.094 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:26.104 -07 000000501 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:49:26.104 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:49:26.104 -07 000000569 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:26.104 -07 000000569 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 02:49:26.104 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.845 mm, average velocity = 2.112 mm/sec
17-03-18 02:49:26.514 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:26.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:27.054 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:27.054 -07 000000606 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:49:27.064 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:27.064 -07 000000569 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:27.074 -07 000000569 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:27.074 -07 000000569 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:49:27.074 -07 000000569 INF: Y Motor: Moved to 74.8311 after 1419 ms (table move)
17-03-18 02:49:27.084 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171646 mm (DAC = 37496)
17-03-18 02:49:27.084 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.084 -07 000000502 INF: FPGA: Recv ZSGSRD 36014
17-03-18 02:49:27.094 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:27.094 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.094 -07 000000455 INF: FPGA: Recv ZSGSRD 36010
17-03-18 02:49:27.104 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.104 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.104 -07 000000561 INF: FPGA: Recv ZSGSRD 36007
17-03-18 02:49:27.114 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.114 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.114 -07 000000444 INF: FPGA: Recv ZSGSRD 36006
17-03-18 02:49:27.124 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.124 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.124 -07 000000462 INF: FPGA: Recv ZSGSRD 36003
17-03-18 02:49:27.134 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.134 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.134 -07 000000629 INF: FPGA: Recv ZSGSRD 36018
17-03-18 02:49:27.144 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.144 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.144 -07 000000579 INF: FPGA: Recv ZSGSRD 36017
17-03-18 02:49:27.154 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.154 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.154 -07 000000424 INF: FPGA: Recv ZSGSRD 36010
17-03-18 02:49:27.164 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.164 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.164 -07 000000626 INF: FPGA: Recv ZSGSRD 36012
17-03-18 02:49:27.174 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.174 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:27.174 -07 000000569 INF: FPGA: Recv ZSGSRD 36006
17-03-18 02:49:27.184 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.184 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:27.184 -07 000000591 INF: FPGA: Recv ZPIEZORD 31981
17-03-18 02:49:27.194 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.194 -07 000000467 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -8.9 V.
17-03-18 02:49:27.194 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36010 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36010 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36003 (-170.7 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:27.194 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36010, posNoise = 8, negNoise = 7
17-03-18 02:49:27.194 -07 000000467 INF: Z Motor: After move to -0.171646, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:27.194 -07 000000467 INF: Z Motor: Settle wait time = 1423 ms, measure time = 108 ms (allowed 150 ms), total time = 1531 ms
17-03-18 02:49:27.194 -07 000000467 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:27.244 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-18 02:49:27.244 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:27.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:27.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:27.244 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:27.244 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:27.244 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:27.244 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:27.244 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:49:27.244 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:27.254 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:27.254 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:27.264 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:49:27.264 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:49:27.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:27.314 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:27.614 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:27.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:27.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:27.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) start.
17-03-18 02:49:27.654 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:27.654 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:27.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 386 ms overall
17-03-18 02:49:27.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1199344456, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:49:27.724 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:27.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:49:27.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:49:27.754 -07 000000461 INF: Autofocus start
17-03-18 02:49:27.754 -07 000000461 INF: MeasureProfile start
17-03-18 02:49:27.754 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:27.754 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:27.764 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:49:27.764 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:27.764 -07 000000461 INF: MeasureProfile done
17-03-18 02:49:27.764 -07 000000461 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:49:27.764 -07 000000461 INF: Autofocus finished
17-03-18 02:49:27.964 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:27.964 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:27.964 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.171659231235947. ----------
17-03-18 02:49:27.964 -07 000000610 INF: Cycle	104	Tile	19	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:27.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35993, sync = True, waitForSettling = True)
17-03-18 02:49:27.974 -07 000000610 INF: Z Motor: Moving to -0.164765 mm, started at -0.171659 mm, distance = 6.89 um
17-03-18 02:49:27.974 -07 000000610 INF: FPGA: Xmit ZDACW 35993\n [Z Motor]
17-03-18 02:49:27.974 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:49:27.984 -07 000000610 INF: FPGA: 'ZDACW 35993' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:27.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:27.984 -07 000000462 INF: FPGA: Recv ZDACR 35993
17-03-18 02:49:27.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:27.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:28.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.144 -07 000000467 INF: FPGA: Recv ZSGSRD 34940
17-03-18 02:49:28.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.154 -07 000000590 INF: FPGA: Recv ZSGSRD 34936
17-03-18 02:49:28.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.164 -07 000000512 INF: FPGA: Recv ZSGSRD 34942
17-03-18 02:49:28.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.174 -07 000000579 INF: FPGA: Recv ZSGSRD 34940
17-03-18 02:49:28.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.184 -07 000000424 INF: FPGA: Recv ZSGSRD 34937
17-03-18 02:49:28.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.194 -07 000000606 INF: FPGA: Recv ZSGSRD 34941
17-03-18 02:49:28.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.204 -07 000000444 INF: FPGA: Recv ZSGSRD 34938
17-03-18 02:49:28.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.214 -07 000000512 INF: FPGA: Recv ZSGSRD 34933
17-03-18 02:49:28.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.224 -07 000000626 INF: FPGA: Recv ZSGSRD 34934
17-03-18 02:49:28.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:28.234 -07 000000576 INF: FPGA: Recv ZSGSRD 34937
17-03-18 02:49:28.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:28.244 -07 000000430 INF: FPGA: Recv ZPIEZORD 30636
17-03-18 02:49:28.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:28.254 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.492 V. Piezo Error = -9.5 V.
17-03-18 02:49:28.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.8 um, Read 10 ADC samples: Avg = 34938 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34938 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34933 (-163.9 uncal um), Max = 34942 (-163.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:49:28.254 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34938, posNoise = 4, negNoise = 5
17-03-18 02:49:28.254 -07 000000610 INF: Z Motor: After move to -0.164765, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:28.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:49:28.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:28.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:28.254 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:28.254 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:28.254 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:28.254 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:28.254 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:28.254 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:28.254 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:49:28.254 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:28.254 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:28.254 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:28.264 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:28.264 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:28.264 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:49:28.264 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:28.274 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:49:28.274 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:49:28.274 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:49:28.274 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:49:28.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 36170 150\n [Camera]
17-03-18 02:49:28.474 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:28.874 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:49:28.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:49:28.874 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:28.874 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:28.874 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-18 02:49:28.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:49:28.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:49:28.874 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:28.874 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:28.874 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:49:29.064 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36170 783
17-03-18 02:49:29.214 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:29.254 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:49:29.254 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:49:29.254 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:29.254 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:49:29.254 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:49:29.254 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:29.254 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:49:29.254 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:49:29.254 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:49:29.264 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:49:29.404 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:29.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:29.404 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:29.404 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:29.404 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:49:29.404 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:29.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:29.404 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:29.404 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:29.404 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-18 02:49:29.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:29.594 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:29.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 36170 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:49:29.804 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:49:29.804 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:49:29.804 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:29.804 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:49:29.814 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:49:29.814 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:29.814 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:29.814 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:49:29.814 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:49:29.814 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:49:29.824 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:49:29.854 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:49:29.854 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:49:29.904 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:49:30.024 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:49:30.024 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:49:30.024 -07 000000629 INF: FPGA: Recv EMCUR 
17-03-18 02:49:30.034 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:49:30.034 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:49:30.534 -07 000000462 INF: FPGA: Recv EMIN
17-03-18 02:49:30.534 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:49:30.534 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:49:30.534 -07 000000606 INF: FPGA: Recv EMCUR 
17-03-18 02:49:30.544 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:30.544 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:49:30.544 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164772475819979. ------
17-03-18 02:49:30.544 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:30.544 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13945 mm
17-03-18 02:49:30.544 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:30.544 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:30.554 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:49:30.554 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:30.554 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:49:30.554 -07 000000618 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 02:49:30.554 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30462, sync = True, waitForSettling = False)
17-03-18 02:49:30.554 -07 000000462 INF: Z Motor: Moving to -0.139446 mm, started at -0.164772 mm, distance = 25.33 um
17-03-18 02:49:30.564 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:30.564 -07 000000569 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:49:30.574 -07 000000462 INF: FPGA: Xmit ZDACW 30462\n [Z Motor]
17-03-18 02:49:30.574 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:49:30.574 -07 000000618 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:30.574 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:49:30.574 -07 000000618 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:49:30.574 -07 000000618 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:49:30.584 -07 000000462 INF: FPGA: 'ZDACW 30462' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:49:30.584 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:30.584 -07 000000424 INF: FPGA: Recv ZDACR 30462
17-03-18 02:49:30.594 -07 000000618 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:49:30.594 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:30.594 -07 000000462 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:49:30.754 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:30.754 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 206 ms overall
17-03-18 02:49:31.284 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.997626,
17-03-18 02:49:31.514 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:31.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:32.214 -07 000000430 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:49:32.214 -07 000000618 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1640 ms overall
17-03-18 02:49:32.214 -07 000000618 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:49:32.214 -07 000000618 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:49:32.214 -07 000000618 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1640 ms, distance = 14.918 mm, average velocity = 9.097 mm/sec
17-03-18 02:49:35.064 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:35.064 -07 000000430 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:49:35.074 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.074 -07 000000618 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:35.104 -07 000000618 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:35.104 -07 000000618 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 02:49:35.104 -07 000000618 INF: Y Motor: Moved to 59.9111 after 4555 ms
17-03-18 02:49:35.114 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139446 mm (DAC = 30462)
17-03-18 02:49:35.114 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.114 -07 000000502 INF: FPGA: Recv ZSGSRD 30990
17-03-18 02:49:35.124 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:35.124 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.124 -07 000000569 INF: FPGA: Recv ZSGSRD 30989
17-03-18 02:49:35.134 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.134 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.134 -07 000000576 INF: FPGA: Recv ZSGSRD 30999
17-03-18 02:49:35.144 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.144 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.144 -07 000000590 INF: FPGA: Recv ZSGSRD 31000
17-03-18 02:49:35.154 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.154 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.154 -07 000000444 INF: FPGA: Recv ZSGSRD 30996
17-03-18 02:49:35.164 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.164 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.164 -07 000000430 INF: FPGA: Recv ZSGSRD 30999
17-03-18 02:49:35.174 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.174 -07 000000561 INF: FPGA: Recv ZSGSRD 30999
17-03-18 02:49:35.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.184 -07 000000579 INF: FPGA: Recv ZSGSRD 31002
17-03-18 02:49:35.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.194 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.194 -07 000000606 INF: FPGA: Recv ZSGSRD 30997
17-03-18 02:49:35.204 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.204 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:35.204 -07 000000444 INF: FPGA: Recv ZSGSRD 30995
17-03-18 02:49:35.214 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.214 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:35.214 -07 000000569 INF: FPGA: Recv ZPIEZORD 26470
17-03-18 02:49:35.224 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:35.224 -07 000000591 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.648 V. Piezo Error = -9.9 V.
17-03-18 02:49:35.224 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30997 (-138.7 uncal um), Error = 0.8 uncal um, Median = 30998 (-138.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30989 (-138.6 uncal um), Max = 31002 (-138.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:49:35.224 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30997, posNoise = 5, negNoise = 8
17-03-18 02:49:35.224 -07 000000591 INF: Z Motor: After move to -0.139446, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:35.224 -07 000000591 INF: Z Motor: Settle wait time = 4558 ms, measure time = 109 ms (allowed 150 ms), total time = 4667 ms
17-03-18 02:49:35.224 -07 000000591 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:35.274 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-18 02:49:35.274 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:35.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:35.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:35.274 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:35.274 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:35.274 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:35.274 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:35.284 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:35.284 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:49:35.304 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-18 02:49:35.304 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:35.304 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:49:35.304 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:35.324 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:49:35.324 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 02:49:35.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:35.374 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 02:49:35.674 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 02:49:35.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 02:49:35.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:35.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:49:35.714 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:35.714 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:35.714 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:49:35.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:49:35.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:35.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:49:35.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:49:35.814 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:35.814 -07 000000579 INF: Image SNR check: start
17-03-18 02:49:35.814 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:35.824 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:35.824 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:35.824 -07 000000579 INF: Image SNR check: pass  [peak (Max-Min)=132.26]
17-03-18 02:49:35.824 -07 000000579 INF: Autofocus start
17-03-18 02:49:35.824 -07 000000579 INF: MeasureProfile start
17-03-18 02:49:35.844 -07 000000579 INF: MeasureProfile done
17-03-18 02:49:35.844 -07 000000579 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:49:35.844 -07 000000579 INF: Autofocus finished
17-03-18 02:49:36.024 -07 000000461 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:36.024 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:36.024 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139454655769299. ----------
17-03-18 02:49:36.034 -07 000000610 INF: Cycle	104	Tile	1	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:36.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28957, sync = True, waitForSettling = True)
17-03-18 02:49:36.034 -07 000000610 INF: Z Motor: Moving to -0.132557 mm, started at -0.139455 mm, distance = 6.90 um
17-03-18 02:49:36.034 -07 000000610 INF: FPGA: Xmit ZDACW 28957\n [Z Motor]
17-03-18 02:49:36.034 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:49:36.044 -07 000000610 INF: FPGA: 'ZDACW 28957' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:36.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:36.044 -07 000000455 INF: FPGA: Recv ZDACR 28957
17-03-18 02:49:36.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:36.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.204 -07 000000462 INF: FPGA: Recv ZSGSRD 29919
17-03-18 02:49:36.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:36.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.214 -07 000000561 INF: FPGA: Recv ZSGSRD 29933
17-03-18 02:49:36.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.224 -07 000000576 INF: FPGA: Recv ZSGSRD 29923
17-03-18 02:49:36.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.234 -07 000000626 INF: FPGA: Recv ZSGSRD 29922
17-03-18 02:49:36.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.244 -07 000000629 INF: FPGA: Recv ZSGSRD 29925
17-03-18 02:49:36.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.254 -07 000000569 INF: FPGA: Recv ZSGSRD 29925
17-03-18 02:49:36.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.264 -07 000000618 INF: FPGA: Recv ZSGSRD 29926
17-03-18 02:49:36.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.274 -07 000000444 INF: FPGA: Recv ZSGSRD 29913
17-03-18 02:49:36.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.284 -07 000000467 INF: FPGA: Recv ZSGSRD 29925
17-03-18 02:49:36.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:36.294 -07 000000591 INF: FPGA: Recv ZSGSRD 29931
17-03-18 02:49:36.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:36.304 -07 000000576 INF: FPGA: Recv ZPIEZORD 25345
17-03-18 02:49:36.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:36.314 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -10.0 V.
17-03-18 02:49:36.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29924 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29925 (-131.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29913 (-131.7 uncal um), Max = 29933 (-131.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:49:36.314 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29924, posNoise = 9, negNoise = 11
17-03-18 02:49:36.314 -07 000000610 INF: Z Motor: After move to -0.132557, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:36.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:49:36.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:36.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:36.314 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:36.314 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:36.314 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:36.314 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:36.314 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:36.314 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:36.314 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:49:36.314 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:36.314 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:36.314 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:49:36.324 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:36.324 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:36.334 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:49:36.334 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:49:36.344 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-18 02:49:36.344 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:36.344 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:49:36.344 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:36.354 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:49:36.354 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 35 ms.
17-03-18 02:49:36.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29134 150\n [Camera]
17-03-18 02:49:36.514 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:36.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:36.554 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:36.644 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.988112,
17-03-18 02:49:36.954 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:36.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:36.954 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:36.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:36.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:36.954 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:36.954 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:36.964 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:36.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:49:36.964 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:49:37.144 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29134 783
17-03-18 02:49:37.294 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:37.334 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:49:37.334 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:49:37.334 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:37.334 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:49:37.334 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:49:37.334 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:37.334 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:37.344 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:37.344 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:49:37.344 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:49:37.484 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:37.484 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:37.484 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:37.484 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:37.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:37.494 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:37.614 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:37.614 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:49:37.624 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:37.624 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:49:37.674 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:49:37.674 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:37.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29134 150' command took 2 ms to send, 1318 ms to get response, and 1326 ms overall
17-03-18 02:49:37.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:49:37.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.13256147614119. ------
17-03-18 02:49:37.684 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:37.684 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13898 mm
17-03-18 02:49:37.684 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:37.684 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:49:37.684 -07 000000461 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 02:49:37.684 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:37.684 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30360, sync = True, waitForSettling = False)
17-03-18 02:49:37.684 -07 000000501 INF: Z Motor: Moving to -0.138979 mm, started at -0.132561 mm, distance = -6.42 um
17-03-18 02:49:37.694 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:49:37.694 -07 000000501 INF: FPGA: Xmit ZDACW 30360\n [Z Motor]
17-03-18 02:49:37.694 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:49:37.704 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:37.704 -07 000000501 INF: FPGA: 'ZDACW 30360' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:49:37.704 -07 000000579 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:49:37.714 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:37.714 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:49:37.714 -07 000000461 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:37.714 -07 000000461 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:37.714 -07 000000461 INF: Y Motor: Moving 1330 steps2
17-03-18 02:49:37.724 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:37.724 -07 000000626 INF: FPGA: Recv ZDACR 30360
17-03-18 02:49:37.734 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:37.734 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:49:37.734 -07 000000501 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:49:37.914 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:37.914 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:49:38.004 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:49:38.004 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:49:38.004 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:38.004 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:38.014 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:49:38.014 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:49:38.014 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:38.014 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-18 02:49:38.014 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:38.014 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 02:49:38.104 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:49:38.104 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:49:38.144 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:38.144 -07 000000424 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:49:38.154 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:49:38.154 -07 000000461 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:38.154 -07 000000461 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:49:38.154 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-18 02:49:39.104 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:39.104 -07 000000561 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:49:39.114 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:39.114 -07 000000461 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:39.134 -07 000000461 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:39.144 -07 000000461 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:49:39.144 -07 000000461 INF: Y Motor: Moved to 60.7329 after 1452 ms (table move)
17-03-18 02:49:39.144 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138979 mm (DAC = 30360)
17-03-18 02:49:39.144 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.144 -07 000000512 INF: FPGA: Recv ZSGSRD 30928
17-03-18 02:49:39.154 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:39.154 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.154 -07 000000576 INF: FPGA: Recv ZSGSRD 30923
17-03-18 02:49:39.164 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.164 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.164 -07 000000467 INF: FPGA: Recv ZSGSRD 30926
17-03-18 02:49:39.174 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.174 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.174 -07 000000629 INF: FPGA: Recv ZSGSRD 30927
17-03-18 02:49:39.184 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.184 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.184 -07 000000561 INF: FPGA: Recv ZSGSRD 30923
17-03-18 02:49:39.194 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.194 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.194 -07 000000467 INF: FPGA: Recv ZSGSRD 30922
17-03-18 02:49:39.204 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.204 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.204 -07 000000501 INF: FPGA: Recv ZSGSRD 30922
17-03-18 02:49:39.214 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.214 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.214 -07 000000461 INF: FPGA: Recv ZSGSRD 30916
17-03-18 02:49:39.224 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.224 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.224 -07 000000455 INF: FPGA: Recv ZSGSRD 30925
17-03-18 02:49:39.234 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.234 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:39.234 -07 000000618 INF: FPGA: Recv ZSGSRD 30924
17-03-18 02:49:39.244 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.244 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:39.244 -07 000000606 INF: FPGA: Recv ZPIEZORD 26711
17-03-18 02:49:39.254 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:39.254 -07 000000590 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -9.3 V.
17-03-18 02:49:39.254 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30924 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30924 (-138.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30916 (-138.1 uncal um), Max = 30928 (-138.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:49:39.254 -07 000000590 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30924, posNoise = 4, negNoise = 8
17-03-18 02:49:39.254 -07 000000590 INF: Z Motor: After move to -0.138979, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:39.254 -07 000000590 INF: Z Motor: Settle wait time = 1455 ms, measure time = 107 ms (allowed 150 ms), total time = 1562 ms
17-03-18 02:49:39.254 -07 000000590 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:39.304 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:49:39.304 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:39.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:39.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:39.304 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:39.304 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:39.304 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:39.304 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:39.304 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:39.304 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:39.314 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:39.314 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:39.324 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:49:39.324 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:49:39.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:39.364 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:39.664 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:39.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:39.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:39.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-18 02:49:39.704 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:39.704 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:39.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 02:49:39.794 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:49:39.794 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:39.794 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:49:39.794 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:49:39.904 -07 000000591 INF: Autofocus start
17-03-18 02:49:39.904 -07 000000591 INF: MeasureProfile start
17-03-18 02:49:39.904 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:39.904 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:39.914 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:39.914 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:39.914 -07 000000591 INF: MeasureProfile done
17-03-18 02:49:39.914 -07 000000591 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:49:39.914 -07 000000591 INF: Autofocus finished
17-03-18 02:49:40.114 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:40.114 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:40.114 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.138985688282951. ----------
17-03-18 02:49:40.114 -07 000000610 INF: Cycle	104	Tile	2	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:40.124 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28884, sync = True, waitForSettling = True)
17-03-18 02:49:40.124 -07 000000610 INF: Z Motor: Moving to -0.132222 mm, started at -0.138986 mm, distance = 6.76 um
17-03-18 02:49:40.124 -07 000000610 INF: FPGA: Xmit ZDACW 28884\n [Z Motor]
17-03-18 02:49:40.124 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:49:40.134 -07 000000610 INF: FPGA: 'ZDACW 28884' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:49:40.134 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:40.134 -07 000000590 INF: FPGA: Recv ZDACR 28884
17-03-18 02:49:40.144 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.144 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:40.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.294 -07 000000430 INF: FPGA: Recv ZSGSRD 29866
17-03-18 02:49:40.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:40.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.304 -07 000000561 INF: FPGA: Recv ZSGSRD 29880
17-03-18 02:49:40.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.314 -07 000000618 INF: FPGA: Recv ZSGSRD 29870
17-03-18 02:49:40.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.324 -07 000000591 INF: FPGA: Recv ZSGSRD 29869
17-03-18 02:49:40.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.334 -07 000000590 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:49:40.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.344 -07 000000579 INF: FPGA: Recv ZSGSRD 29870
17-03-18 02:49:40.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.354 -07 000000501 INF: FPGA: Recv ZSGSRD 29876
17-03-18 02:49:40.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.364 -07 000000444 INF: FPGA: Recv ZSGSRD 29873
17-03-18 02:49:40.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.374 -07 000000424 INF: FPGA: Recv ZSGSRD 29873
17-03-18 02:49:40.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:40.384 -07 000000467 INF: FPGA: Recv ZSGSRD 29876
17-03-18 02:49:40.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:40.394 -07 000000430 INF: FPGA: Recv ZPIEZORD 25295
17-03-18 02:49:40.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:40.404 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -10.0 V.
17-03-18 02:49:40.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29873 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29873 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29866 (-131.4 uncal um), Max = 29880 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:40.404 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29873, posNoise = 7, negNoise = 7
17-03-18 02:49:40.404 -07 000000610 INF: Z Motor: After move to -0.132222, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:40.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:49:40.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:40.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:40.404 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:40.404 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:40.404 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:40.404 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:40.404 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:40.404 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:40.404 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:49:40.404 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:40.404 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:40.404 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:40.414 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:40.414 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:40.414 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:49:40.414 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:40.424 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:49:40.424 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:49:40.424 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:49:40.424 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:49:40.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29061 150\n [Camera]
17-03-18 02:49:40.634 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:41.024 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:41.034 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:41.034 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:41.034 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:41.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:41.034 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:41.034 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:41.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:49:41.034 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:41.034 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:49:41.224 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29061 783
17-03-18 02:49:41.374 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:41.424 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-18 02:49:41.424 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:49:41.424 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:41.424 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:49:41.424 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:49:41.424 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:41.424 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:41.424 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:41.424 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:49:41.434 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:49:41.514 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:41.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:41.564 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:41.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:41.564 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:41.564 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:41.564 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:49:41.564 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:41.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:41.564 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:41.564 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:41.564 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:49:41.754 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:49:41.754 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:41.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29061 150' command took 2 ms to send, 1315 ms to get response, and 1324 ms overall
17-03-18 02:49:41.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:49:41.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.13223384132196. ------
17-03-18 02:49:41.764 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:41.764 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13896 mm
17-03-18 02:49:41.764 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:41.764 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:41.764 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:49:41.764 -07 000000430 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:49:41.764 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30357, sync = True, waitForSettling = False)
17-03-18 02:49:41.764 -07 000000424 INF: Z Motor: Moving to -0.138965 mm, started at -0.132234 mm, distance = -6.73 um
17-03-18 02:49:41.774 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:41.774 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:41.774 -07 000000512 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:49:41.784 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:49:41.784 -07 000000430 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:41.784 -07 000000424 INF: FPGA: Xmit ZDACW 30357\n [Z Motor]
17-03-18 02:49:41.784 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:49:41.784 -07 000000430 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:41.784 -07 000000430 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:49:41.794 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:41.794 -07 000000424 INF: FPGA: 'ZDACW 30357' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:49:41.804 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:41.814 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:41.814 -07 000000606 INF: FPGA: Recv ZDACR 30357
17-03-18 02:49:41.824 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:49:41.824 -07 000000424 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 02:49:41.954 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:49:41.954 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:49:41.954 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:41.954 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:49:41.964 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:49:41.964 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:41.964 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:41.964 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:49:41.964 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:49:41.964 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:49:41.994 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:41.994 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 02:49:42.004 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.997626,
17-03-18 02:49:42.174 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:49:42.174 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 391 ms overall
17-03-18 02:49:42.224 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:42.224 -07 000000501 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:49:42.234 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:42.234 -07 000000430 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:42.234 -07 000000430 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:49:42.234 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.840 mm, average velocity = 2.148 mm/sec
17-03-18 02:49:43.184 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:43.184 -07 000000561 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:49:43.194 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:43.194 -07 000000430 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:43.224 -07 000000430 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:43.224 -07 000000430 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:49:43.224 -07 000000430 INF: Y Motor: Moved to 61.5640 after 1454 ms (table move)
17-03-18 02:49:43.224 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138965 mm (DAC = 30357)
17-03-18 02:49:43.224 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.224 -07 000000569 INF: FPGA: Recv ZSGSRD 30923
17-03-18 02:49:43.234 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:43.234 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.234 -07 000000512 INF: FPGA: Recv ZSGSRD 30912
17-03-18 02:49:43.244 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.244 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.244 -07 000000424 INF: FPGA: Recv ZSGSRD 30924
17-03-18 02:49:43.254 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.254 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.254 -07 000000618 INF: FPGA: Recv ZSGSRD 30924
17-03-18 02:49:43.264 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.264 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.264 -07 000000561 INF: FPGA: Recv ZSGSRD 30920
17-03-18 02:49:43.274 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.274 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.274 -07 000000626 INF: FPGA: Recv ZSGSRD 30918
17-03-18 02:49:43.284 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.284 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.284 -07 000000512 INF: FPGA: Recv ZSGSRD 30914
17-03-18 02:49:43.294 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.294 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.294 -07 000000455 INF: FPGA: Recv ZSGSRD 30918
17-03-18 02:49:43.304 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.304 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.304 -07 000000618 INF: FPGA: Recv ZSGSRD 30920
17-03-18 02:49:43.314 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.314 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:43.314 -07 000000591 INF: FPGA: Recv ZSGSRD 30920
17-03-18 02:49:43.324 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.324 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:43.324 -07 000000626 INF: FPGA: Recv ZPIEZORD 26730
17-03-18 02:49:43.334 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:43.334 -07 000000462 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.2 V.
17-03-18 02:49:43.334 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30919 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30920 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30912 (-138.1 uncal um), Max = 30924 (-138.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:43.334 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30919, posNoise = 5, negNoise = 7
17-03-18 02:49:43.334 -07 000000462 INF: Z Motor: After move to -0.138965, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:43.334 -07 000000462 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:49:43.334 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:43.384 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:49:43.384 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:43.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:43.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:43.384 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:43.384 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:43.384 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:43.384 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:43.384 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:49:43.384 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:43.394 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:43.394 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:43.394 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:49:43.394 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:49:43.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:43.444 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:43.744 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:43.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:43.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:43.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:49:43.784 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:43.784 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:43.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:49:43.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:49:43.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:43.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:49:43.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:49:43.884 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:43.884 -07 000000461 INF: Autofocus start
17-03-18 02:49:43.884 -07 000000461 INF: MeasureProfile start
17-03-18 02:49:43.894 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:43.894 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:49:43.894 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:43.904 -07 000000461 INF: MeasureProfile done
17-03-18 02:49:43.904 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:49:43.904 -07 000000461 INF: Autofocus finished
17-03-18 02:49:44.094 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:44.094 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:49:44.104 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.138953567222242. ----------
17-03-18 02:49:44.104 -07 000000610 INF: Cycle	104	Tile	3	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:44.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28864, sync = True, waitForSettling = True)
17-03-18 02:49:44.104 -07 000000610 INF: Z Motor: Moving to -0.132131 mm, started at -0.138954 mm, distance = 6.82 um
17-03-18 02:49:44.104 -07 000000610 INF: FPGA: Xmit ZDACW 28864\n [Z Motor]
17-03-18 02:49:44.104 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:49:44.114 -07 000000610 INF: FPGA: 'ZDACW 28864' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:44.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:44.114 -07 000000467 INF: FPGA: Recv ZDACR 28864
17-03-18 02:49:44.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:44.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.274 -07 000000569 INF: FPGA: Recv ZSGSRD 29851
17-03-18 02:49:44.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:44.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.284 -07 000000591 INF: FPGA: Recv ZSGSRD 29854
17-03-18 02:49:44.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.294 -07 000000430 INF: FPGA: Recv ZSGSRD 29858
17-03-18 02:49:44.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.304 -07 000000618 INF: FPGA: Recv ZSGSRD 29855
17-03-18 02:49:44.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.314 -07 000000606 INF: FPGA: Recv ZSGSRD 29859
17-03-18 02:49:44.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.324 -07 000000569 INF: FPGA: Recv ZSGSRD 29856
17-03-18 02:49:44.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.334 -07 000000579 INF: FPGA: Recv ZSGSRD 29857
17-03-18 02:49:44.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.344 -07 000000629 INF: FPGA: Recv ZSGSRD 29867
17-03-18 02:49:44.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.354 -07 000000512 INF: FPGA: Recv ZSGSRD 29865
17-03-18 02:49:44.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:44.364 -07 000000502 INF: FPGA: Recv ZSGSRD 29855
17-03-18 02:49:44.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:44.374 -07 000000455 INF: FPGA: Recv ZPIEZORD 25283
17-03-18 02:49:44.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:44.384 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -10.0 V.
17-03-18 02:49:44.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29858 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29856 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29851 (-131.3 uncal um), Max = 29867 (-131.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:44.384 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29858, posNoise = 9, negNoise = 7
17-03-18 02:49:44.384 -07 000000610 INF: Z Motor: After move to -0.132131, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:44.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:49:44.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:44.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:44.384 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:44.384 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:44.384 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:44.384 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:44.384 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:44.384 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:44.384 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:49:44.384 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:44.384 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:44.384 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:44.394 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:49:44.394 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:44.394 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:44.394 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:44.404 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:49:44.404 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:49:44.404 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:49:44.404 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:49:44.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 29041 150\n [Camera]
17-03-18 02:49:44.604 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:45.004 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:45.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:45.004 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:45.004 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:45.004 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:45.004 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:49:45.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:45.004 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:45.004 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:45.004 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:49:45.194 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29041 783
17-03-18 02:49:45.344 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:45.384 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:49:45.384 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:49:45.384 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:45.394 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:45.394 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:49:45.394 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:49:45.394 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:45.394 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:49:45.394 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:45.394 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:49:45.534 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:45.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:45.534 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:45.534 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:45.534 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:49:45.534 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:45.534 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:45.534 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:45.534 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:45.534 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:49:45.724 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:45.724 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:45.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 29041 150' command took 2 ms to send, 1317 ms to get response, and 1324 ms overall
17-03-18 02:49:45.724 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:49:45.724 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132137478139834. ------
17-03-18 02:49:45.734 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13853 mm
17-03-18 02:49:45.734 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:45.744 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:45.744 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:49:45.744 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:49:45.744 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30263, sync = True, waitForSettling = False)
17-03-18 02:49:45.744 -07 000000626 INF: Z Motor: Moving to -0.138535 mm, started at -0.132137 mm, distance = -6.40 um
17-03-18 02:49:45.744 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:45.754 -07 000000626 INF: FPGA: Xmit ZDACW 30263\n [Z Motor]
17-03-18 02:49:45.754 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 6 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:49:45.754 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:49:45.764 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:45.764 -07 000000626 INF: FPGA: 'ZDACW 30263' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:49:45.764 -07 000000467 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:49:45.774 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:49:45.774 -07 000000512 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:45.774 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:45.774 -07 000000512 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:49:45.774 -07 000000590 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:45.784 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:45.784 -07 000000444 INF: FPGA: Recv ZDACR 30263
17-03-18 02:49:45.794 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:45.794 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:49:45.794 -07 000000626 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:49:45.934 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 403 ms.
17-03-18 02:49:45.934 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:49:45.934 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:45.944 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:49:45.944 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:49:45.944 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:45.944 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:45.944 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:49:45.944 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:49:45.954 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:49:45.974 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:45.974 -07 000000590 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 02:49:46.164 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:49:46.164 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:49:46.214 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:46.214 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:49:46.224 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:46.224 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:46.224 -07 000000512 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:49:46.224 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-18 02:49:46.514 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:46.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:47.174 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:47.174 -07 000000467 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:49:47.184 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:47.184 -07 000000512 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:47.204 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:47.204 -07 000000512 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:49:47.204 -07 000000512 INF: Y Motor: Moved to 62.3955 after 1464 ms (table move)
17-03-18 02:49:47.214 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138535 mm (DAC = 30263)
17-03-18 02:49:47.214 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.214 -07 000000618 INF: FPGA: Recv ZSGSRD 30854
17-03-18 02:49:47.224 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:47.224 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.224 -07 000000455 INF: FPGA: Recv ZSGSRD 30858
17-03-18 02:49:47.234 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.234 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.234 -07 000000606 INF: FPGA: Recv ZSGSRD 30854
17-03-18 02:49:47.244 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.244 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.244 -07 000000590 INF: FPGA: Recv ZSGSRD 30859
17-03-18 02:49:47.254 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.254 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30860
17-03-18 02:49:47.264 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.264 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.264 -07 000000502 INF: FPGA: Recv ZSGSRD 30850
17-03-18 02:49:47.274 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.274 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.274 -07 000000629 INF: FPGA: Recv ZSGSRD 30851
17-03-18 02:49:47.284 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.284 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.284 -07 000000444 INF: FPGA: Recv ZSGSRD 30851
17-03-18 02:49:47.294 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.294 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.294 -07 000000430 INF: FPGA: Recv ZSGSRD 30856
17-03-18 02:49:47.304 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.304 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:47.304 -07 000000424 INF: FPGA: Recv ZSGSRD 30862
17-03-18 02:49:47.314 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.314 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:47.314 -07 000000467 INF: FPGA: Recv ZPIEZORD 26621
17-03-18 02:49:47.324 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:47.324 -07 000000591 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -9.3 V.
17-03-18 02:49:47.324 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30856 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30855 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30850 (-137.7 uncal um), Max = 30862 (-137.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:49:47.324 -07 000000591 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30856, posNoise = 6, negNoise = 6
17-03-18 02:49:47.324 -07 000000591 INF: Z Motor: After move to -0.138535, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:47.324 -07 000000591 INF: Z Motor: Settle wait time = 1468 ms, measure time = 109 ms (allowed 150 ms), total time = 1577 ms
17-03-18 02:49:47.324 -07 000000591 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:47.364 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.02213,
17-03-18 02:49:47.374 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 02:49:47.374 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:47.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:47.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:47.374 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:47.374 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:47.374 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:47.374 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:47.384 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:49:47.384 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:47.384 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:47.384 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:47.394 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:49:47.394 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:49:47.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:47.444 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:47.744 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:47.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:47.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:47.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-18 02:49:47.784 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:47.784 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:47.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 02:49:47.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:49:47.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:47.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:49:47.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:49:47.884 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:47.884 -07 000000618 INF: Autofocus start
17-03-18 02:49:47.884 -07 000000618 INF: MeasureProfile start
17-03-18 02:49:47.884 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:47.894 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:47.894 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:47.894 -07 000000618 INF: MeasureProfile done
17-03-18 02:49:47.894 -07 000000618 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:49:47.894 -07 000000618 INF: Autofocus finished
17-03-18 02:49:48.094 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:48.094 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:48.094 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138548841857311. ----------
17-03-18 02:49:48.094 -07 000000610 INF: Cycle	104	Tile	4	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:48.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28787, sync = True, waitForSettling = True)
17-03-18 02:49:48.104 -07 000000610 INF: Z Motor: Moving to -0.131778 mm, started at -0.138549 mm, distance = 6.77 um
17-03-18 02:49:48.104 -07 000000610 INF: FPGA: Xmit ZDACW 28787\n [Z Motor]
17-03-18 02:49:48.104 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:49:48.114 -07 000000610 INF: FPGA: 'ZDACW 28787' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:49:48.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:48.114 -07 000000462 INF: FPGA: Recv ZDACR 28787
17-03-18 02:49:48.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:48.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.274 -07 000000502 INF: FPGA: Recv ZSGSRD 29806
17-03-18 02:49:48.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.284 -07 000000561 INF: FPGA: Recv ZSGSRD 29805
17-03-18 02:49:48.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.294 -07 000000590 INF: FPGA: Recv ZSGSRD 29803
17-03-18 02:49:48.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.304 -07 000000467 INF: FPGA: Recv ZSGSRD 29801
17-03-18 02:49:48.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.314 -07 000000455 INF: FPGA: Recv ZSGSRD 29797
17-03-18 02:49:48.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.324 -07 000000569 INF: FPGA: Recv ZSGSRD 29808
17-03-18 02:49:48.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.334 -07 000000461 INF: FPGA: Recv ZSGSRD 29813
17-03-18 02:49:48.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.344 -07 000000606 INF: FPGA: Recv ZSGSRD 29804
17-03-18 02:49:48.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:49:48.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.354 -07 000000591 INF: FPGA: Recv ZSGSRD 29808
17-03-18 02:49:48.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:48.364 -07 000000501 INF: FPGA: Recv ZSGSRD 29805
17-03-18 02:49:48.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:48.374 -07 000000444 INF: FPGA: Recv ZPIEZORD 25253
17-03-18 02:49:48.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:48.384 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -10.0 V.
17-03-18 02:49:48.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29805 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29805 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29797 (-131.0 uncal um), Max = 29813 (-131.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:49:48.384 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29805, posNoise = 8, negNoise = 8
17-03-18 02:49:48.384 -07 000000610 INF: Z Motor: After move to -0.131778, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:48.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:49:48.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:48.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:48.384 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:48.384 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:48.384 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:48.384 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:48.384 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:48.384 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:48.394 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:48.394 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:48.394 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:48.394 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:48.394 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:48.394 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:48.394 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:49:48.394 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:48.404 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:49:48.404 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:49:48.404 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:49:48.404 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:49:48.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28963 150\n [Camera]
17-03-18 02:49:48.604 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:49.004 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:49.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:49.004 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:49.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:49.004 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:49.004 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:49.004 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:49.014 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:49:49.014 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:49.014 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:49:49.194 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28963 783
17-03-18 02:49:49.344 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:49.384 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:49:49.384 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:49:49.384 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:49.384 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:49.384 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:49:49.384 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:49:49.384 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:49.394 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:49:49.394 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:49.394 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:49:49.534 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:49.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:49.544 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:49.544 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:49.544 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:49:49.544 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:49.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:49.544 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:49.544 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:49.544 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:49:49.734 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:49.734 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:49.734 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28963 150' command took 2 ms to send, 1321 ms to get response, and 1323 ms overall
17-03-18 02:49:49.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:49:49.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.13179699489632. ------
17-03-18 02:49:49.734 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:49.734 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13845 mm
17-03-18 02:49:49.734 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:49.744 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:49:49.744 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30245, sync = True, waitForSettling = False)
17-03-18 02:49:49.744 -07 000000512 INF: Z Motor: Moving to -0.138453 mm, started at -0.131797 mm, distance = -6.66 um
17-03-18 02:49:49.744 -07 000000512 INF: FPGA: Xmit ZDACW 30245\n [Z Motor]
17-03-18 02:49:49.744 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:49.744 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:49:49.744 -07 000000467 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:49:49.744 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:49:49.754 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:49.754 -07 000000512 INF: FPGA: 'ZDACW 30245' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:49.764 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:49.764 -07 000000590 INF: FPGA: Recv YRDPOS 127787
17-03-18 02:49:49.774 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:49.774 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:49:49.774 -07 000000467 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:49.774 -07 000000576 INF: FPGA: Recv ZDACR 30245
17-03-18 02:49:49.774 -07 000000467 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:49.774 -07 000000467 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:49:49.784 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:49:49.784 -07 000000512 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:49:49.784 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:49.934 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:49:49.934 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:49:49.934 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:49.934 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:49:49.934 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:49:49.934 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:49.934 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:49.944 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:49:49.944 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:49:49.944 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:49:49.954 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:49.954 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 02:49:50.154 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:49:50.154 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:49:50.204 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:50.204 -07 000000606 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:49:50.214 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:50.214 -07 000000467 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:50.214 -07 000000467 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:49:50.214 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.837 mm, average velocity = 2.180 mm/sec
17-03-18 02:49:51.164 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:51.164 -07 000000461 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:49:51.174 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:51.174 -07 000000467 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:51.194 -07 000000467 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:51.194 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:49:51.194 -07 000000467 INF: Y Motor: Moved to 63.2241 after 1458 ms (table move)
17-03-18 02:49:51.204 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138453 mm (DAC = 30245)
17-03-18 02:49:51.204 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.204 -07 000000591 INF: FPGA: Recv ZSGSRD 30846
17-03-18 02:49:51.214 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:51.214 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.214 -07 000000561 INF: FPGA: Recv ZSGSRD 30844
17-03-18 02:49:51.224 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.224 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.224 -07 000000502 INF: FPGA: Recv ZSGSRD 30848
17-03-18 02:49:51.234 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.234 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.234 -07 000000626 INF: FPGA: Recv ZSGSRD 30841
17-03-18 02:49:51.244 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.244 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.244 -07 000000606 INF: FPGA: Recv ZSGSRD 30848
17-03-18 02:49:51.254 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.254 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.254 -07 000000467 INF: FPGA: Recv ZSGSRD 30850
17-03-18 02:49:51.264 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.264 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.264 -07 000000462 INF: FPGA: Recv ZSGSRD 30848
17-03-18 02:49:51.274 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.274 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.274 -07 000000569 INF: FPGA: Recv ZSGSRD 30837
17-03-18 02:49:51.284 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.284 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.284 -07 000000579 INF: FPGA: Recv ZSGSRD 30837
17-03-18 02:49:51.294 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.294 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:51.294 -07 000000512 INF: FPGA: Recv ZSGSRD 30842
17-03-18 02:49:51.304 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.304 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:51.304 -07 000000467 INF: FPGA: Recv ZPIEZORD 26680
17-03-18 02:49:51.314 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:51.314 -07 000000430 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.615 V. Piezo Error = -9.2 V.
17-03-18 02:49:51.314 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30844 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30845 (-137.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30837 (-137.6 uncal um), Max = 30850 (-137.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:49:51.314 -07 000000430 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30844, posNoise = 6, negNoise = 7
17-03-18 02:49:51.314 -07 000000430 INF: Z Motor: After move to -0.138453, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:51.314 -07 000000430 INF: Z Motor: Settle wait time = 1462 ms, measure time = 108 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:49:51.314 -07 000000430 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:51.364 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 02:49:51.364 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:51.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:51.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:51.364 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:51.364 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:51.364 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:51.364 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:51.364 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:51.364 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:51.374 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:51.374 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:51.374 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:49:51.374 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 02:49:51.384 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:51.424 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:51.514 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:51.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:51.724 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:51.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:51.724 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:51.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-18 02:49:51.764 -07 000000579 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:51.764 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:51.764 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:49:51.844 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:49:51.844 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:51.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:49:51.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:49:51.864 -07 000000512 INF: Autofocus start
17-03-18 02:49:51.864 -07 000000512 INF: MeasureProfile start
17-03-18 02:49:51.864 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:51.864 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:51.874 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:49:51.874 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:51.874 -07 000000512 INF: MeasureProfile done
17-03-18 02:49:51.874 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:49:51.874 -07 000000512 INF: Autofocus finished
17-03-18 02:49:52.074 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:52.074 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:52.074 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13847175131161. ----------
17-03-18 02:49:52.084 -07 000000610 INF: Cycle	104	Tile	5	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:52.084 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28752, sync = True, waitForSettling = True)
17-03-18 02:49:52.084 -07 000000610 INF: Z Motor: Moving to -0.131618 mm, started at -0.138472 mm, distance = 6.85 um
17-03-18 02:49:52.084 -07 000000610 INF: FPGA: Xmit ZDACW 28752\n [Z Motor]
17-03-18 02:49:52.084 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:49:52.094 -07 000000610 INF: FPGA: 'ZDACW 28752' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:52.094 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:52.094 -07 000000629 INF: FPGA: Recv ZDACR 28752
17-03-18 02:49:52.104 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:52.104 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:52.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.254 -07 000000569 INF: FPGA: Recv ZSGSRD 29777
17-03-18 02:49:52.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:52.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.264 -07 000000467 INF: FPGA: Recv ZSGSRD 29779
17-03-18 02:49:52.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:52.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.284 -07 000000444 INF: FPGA: Recv ZSGSRD 29780
17-03-18 02:49:52.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:49:52.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.294 -07 000000576 INF: FPGA: Recv ZSGSRD 29781
17-03-18 02:49:52.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:52.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.324 -07 000000590 INF: FPGA: Recv ZSGSRD 29780
17-03-18 02:49:52.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:49:52.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.334 -07 000000501 INF: FPGA: Recv ZSGSRD 29770
17-03-18 02:49:52.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:52.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.344 -07 000000502 INF: FPGA: Recv ZSGSRD 29775
17-03-18 02:49:52.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:52.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.354 -07 000000606 INF: FPGA: Recv ZSGSRD 29786
17-03-18 02:49:52.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:52.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.374 -07 000000591 INF: FPGA: Recv ZSGSRD 29781
17-03-18 02:49:52.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 8 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:49:52.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:52.384 -07 000000462 INF: FPGA: Recv ZSGSRD 29774
17-03-18 02:49:52.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:52.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:52.394 -07 000000576 INF: FPGA: Recv ZPIEZORD 25249
17-03-18 02:49:52.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:52.404 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.9 V.
17-03-18 02:49:52.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29778 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29780 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29770 (-130.8 uncal um), Max = 29786 (-130.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:49:52.404 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29778, posNoise = 8, negNoise = 8
17-03-18 02:49:52.404 -07 000000610 INF: Z Motor: After move to -0.131618, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:52.404 -07 000000610 INF: Z Motor: MoveAbsStepped took 318 ms)
17-03-18 02:49:52.404 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:52.404 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:52.404 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:52.404 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:52.404 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:52.404 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:52.404 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:52.404 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:52.404 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:49:52.404 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:52.404 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:52.404 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:52.414 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:49:52.414 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:52.414 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:52.414 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:52.424 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:49:52.424 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:49:52.424 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:49:52.424 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:49:52.424 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28929 150\n [Camera]
17-03-18 02:49:52.624 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:52.724 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.979922,
17-03-18 02:49:53.024 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:53.024 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:53.024 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:53.024 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:53.024 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 02:49:53.024 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:53.034 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:53.034 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:53.034 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:53.034 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:49:53.214 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28929 783
17-03-18 02:49:53.364 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:53.414 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 02:49:53.414 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:49:53.414 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:53.414 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:49:53.414 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:49:53.414 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:53.424 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:53.424 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:49:53.424 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:49:53.424 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:49:53.564 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:53.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:53.564 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:53.564 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:53.564 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 02:49:53.564 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:53.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:53.564 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:53.564 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:53.564 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 02:49:53.754 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:53.754 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:53.754 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28929 150' command took 2 ms to send, 1312 ms to get response, and 1324 ms overall
17-03-18 02:49:53.754 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:49:53.754 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131623541168493. ------
17-03-18 02:49:53.764 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13813 mm
17-03-18 02:49:53.764 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:53.764 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:53.764 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:49:53.764 -07 000000502 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:49:53.764 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:53.764 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30174, sync = True, waitForSettling = False)
17-03-18 02:49:53.764 -07 000000618 INF: Z Motor: Moving to -0.138128 mm, started at -0.131624 mm, distance = -6.50 um
17-03-18 02:49:53.774 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:53.774 -07 000000618 INF: FPGA: Xmit ZDACW 30174\n [Z Motor]
17-03-18 02:49:53.774 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:49:53.784 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:53.784 -07 000000618 INF: FPGA: 'ZDACW 30174' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:49:53.784 -07 000000462 INF: FPGA: Recv YRDPOS 129484
17-03-18 02:49:53.794 -07 000000606 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:53.794 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:49:53.794 -07 000000502 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:53.794 -07 000000502 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:53.794 -07 000000502 INF: Y Motor: Moving 1341 steps-17
17-03-18 02:49:53.804 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:53.804 -07 000000579 INF: FPGA: Recv ZDACR 30174
17-03-18 02:49:53.814 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:53.814 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:49:53.814 -07 000000618 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:49:53.964 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 02:49:53.964 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:49:53.964 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:53.964 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:49:53.964 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:49:53.964 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:53.974 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:53.974 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:49:53.974 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 02:49:53.974 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:49:53.994 -07 000000430 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:53.994 -07 000000606 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:49:54.184 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:49:54.184 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:49:54.234 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:54.234 -07 000000569 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:49:54.244 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:54.244 -07 000000502 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:54.244 -07 000000502 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 02:49:54.244 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-18 02:49:55.194 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:55.194 -07 000000606 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:49:55.204 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.204 -07 000000502 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:55.224 -07 000000502 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:55.224 -07 000000502 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:49:55.224 -07 000000502 INF: Y Motor: Moved to 64.0571 after 1460 ms (table move)
17-03-18 02:49:55.224 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138128 mm (DAC = 30174)
17-03-18 02:49:55.224 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.234 -07 000000461 INF: FPGA: Recv ZSGSRD 30801
17-03-18 02:49:55.234 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:49:55.234 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.234 -07 000000512 INF: FPGA: Recv ZSGSRD 30794
17-03-18 02:49:55.244 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:49:55.244 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.244 -07 000000576 INF: FPGA: Recv ZSGSRD 30793
17-03-18 02:49:55.254 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.254 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.254 -07 000000444 INF: FPGA: Recv ZSGSRD 30793
17-03-18 02:49:55.264 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.264 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.264 -07 000000467 INF: FPGA: Recv ZSGSRD 30781
17-03-18 02:49:55.274 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.274 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.274 -07 000000618 INF: FPGA: Recv ZSGSRD 30791
17-03-18 02:49:55.284 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.284 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.284 -07 000000561 INF: FPGA: Recv ZSGSRD 30794
17-03-18 02:49:55.294 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.294 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.294 -07 000000455 INF: FPGA: Recv ZSGSRD 30789
17-03-18 02:49:55.304 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.304 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.304 -07 000000618 INF: FPGA: Recv ZSGSRD 30792
17-03-18 02:49:55.314 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.314 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:55.314 -07 000000462 INF: FPGA: Recv ZSGSRD 30789
17-03-18 02:49:55.324 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.324 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:55.324 -07 000000590 INF: FPGA: Recv ZPIEZORD 26596
17-03-18 02:49:55.334 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:55.334 -07 000000501 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.604 V. Piezo Error = -9.2 V.
17-03-18 02:49:55.334 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30792 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30792 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30781 (-137.3 uncal um), Max = 30801 (-137.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:49:55.334 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30792, posNoise = 9, negNoise = 11
17-03-18 02:49:55.334 -07 000000501 INF: Z Motor: After move to -0.138128, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:55.334 -07 000000501 INF: Z Motor: Settle wait time = 1463 ms, measure time = 102 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:49:55.334 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:55.384 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:49:55.384 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:55.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:55.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:55.384 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:55.384 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:55.384 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:55.384 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:55.384 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:55.384 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:55.384 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:55.394 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:55.394 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:49:55.394 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:49:55.404 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:55.444 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:55.744 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:55.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:55.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:55.744 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-18 02:49:55.784 -07 000000502 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:55.784 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:55.784 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:49:55.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 119 ms.
17-03-18 02:49:55.864 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:55.864 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:49:55.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:49:55.884 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:55.884 -07 000000430 INF: Autofocus start
17-03-18 02:49:55.884 -07 000000430 INF: MeasureProfile start
17-03-18 02:49:55.884 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:55.894 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:55.894 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:55.894 -07 000000430 INF: MeasureProfile done
17-03-18 02:49:55.894 -07 000000430 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:49:55.894 -07 000000430 INF: Autofocus finished
17-03-18 02:49:56.094 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:49:56.094 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:49:56.094 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138137692280238. ----------
17-03-18 02:49:56.094 -07 000000610 INF: Cycle	104	Tile	6	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:49:56.104 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28669, sync = True, waitForSettling = True)
17-03-18 02:49:56.104 -07 000000610 INF: Z Motor: Moving to -0.131238 mm, started at -0.138138 mm, distance = 6.90 um
17-03-18 02:49:56.104 -07 000000610 INF: FPGA: Xmit ZDACW 28669\n [Z Motor]
17-03-18 02:49:56.104 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:49:56.114 -07 000000610 INF: FPGA: 'ZDACW 28669' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:56.114 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:56.114 -07 000000444 INF: FPGA: Recv ZDACR 28669
17-03-18 02:49:56.124 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.124 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:49:56.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.274 -07 000000462 INF: FPGA: Recv ZSGSRD 29721
17-03-18 02:49:56.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.284 -07 000000501 INF: FPGA: Recv ZSGSRD 29715
17-03-18 02:49:56.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.294 -07 000000461 INF: FPGA: Recv ZSGSRD 29719
17-03-18 02:49:56.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.304 -07 000000512 INF: FPGA: Recv ZSGSRD 29721
17-03-18 02:49:56.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.314 -07 000000569 INF: FPGA: Recv ZSGSRD 29718
17-03-18 02:49:56.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.324 -07 000000462 INF: FPGA: Recv ZSGSRD 29715
17-03-18 02:49:56.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.334 -07 000000467 INF: FPGA: Recv ZSGSRD 29721
17-03-18 02:49:56.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.344 -07 000000629 INF: FPGA: Recv ZSGSRD 29726
17-03-18 02:49:56.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.354 -07 000000512 INF: FPGA: Recv ZSGSRD 29715
17-03-18 02:49:56.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:49:56.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:56.364 -07 000000618 INF: FPGA: Recv ZSGSRD 29715
17-03-18 02:49:56.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.374 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:56.374 -07 000000591 INF: FPGA: Recv ZPIEZORD 25190
17-03-18 02:49:56.384 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:56.384 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.375 V. Piezo Error = -9.9 V.
17-03-18 02:49:56.384 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29719 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29718 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29715 (-130.4 uncal um), Max = 29726 (-130.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:49:56.384 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29719, posNoise = 7, negNoise = 4
17-03-18 02:49:56.384 -07 000000610 INF: Z Motor: After move to -0.131238, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:56.384 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:49:56.384 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:56.384 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:56.384 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:56.384 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:56.384 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:49:56.384 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:56.384 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:49:56.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:49:56.384 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:49:56.384 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:49:56.384 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:49:56.384 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:49:56.394 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:49:56.394 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:49:56.394 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:49:56.394 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:49:56.404 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:49:56.404 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:49:56.404 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:49:56.404 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:49:56.404 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28846 150\n [Camera]
17-03-18 02:49:56.514 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:49:56.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:49:56.604 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:49:57.004 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:49:57.004 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:49:57.004 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:57.004 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:57.004 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 02:49:57.004 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:49:57.004 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:49:57.004 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:57.004 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:57.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 02:49:57.194 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28846 783
17-03-18 02:49:57.344 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:49:57.374 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:49:57.374 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:49:57.374 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:57.384 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:57.384 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:49:57.384 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:49:57.384 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:57.384 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:57.384 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:49:57.394 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:49:57.534 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:49:57.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:49:57.534 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:49:57.684 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:49:57.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:49:57.684 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:49:57.684 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:49:57.684 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 02:49:57.694 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:49:57.694 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-18 02:49:57.724 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:49:57.724 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:49:57.724 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28846 150' command took 2 ms to send, 1319 ms to get response, and 1323 ms overall
17-03-18 02:49:57.734 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:49:57.734 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131244512652129. ------
17-03-18 02:49:57.734 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:57.734 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13780 mm
17-03-18 02:49:57.734 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:49:57.734 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:49:57.734 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 30102, sync = True, waitForSettling = False)
17-03-18 02:49:57.734 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:49:57.734 -07 000000461 INF: Z Motor: Moving to -0.137798 mm, started at -0.131245 mm, distance = -6.55 um
17-03-18 02:49:57.734 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:57.744 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:49:57.744 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:57.744 -07 000000576 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:49:57.754 -07 000000461 INF: FPGA: Xmit ZDACW 30102\n [Z Motor]
17-03-18 02:49:57.754 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:49:57.754 -07 000000561 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:57.754 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:49:57.754 -07 000000561 INF: Y Motor: Moving 1337 steps-11
17-03-18 02:49:57.754 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:49:57.764 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:49:57.764 -07 000000461 INF: FPGA: 'ZDACW 30102' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:49:57.774 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:49:57.794 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:49:57.794 -07 000000629 INF: FPGA: Recv ZDACR 30102
17-03-18 02:49:57.804 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-18 02:49:57.804 -07 000000461 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet))
17-03-18 02:49:57.964 -07 000000590 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:49:57.964 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-18 02:49:58.074 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:49:58.084 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:49:58.084 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:58.084 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:49:58.084 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:49:58.084 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:58.084 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:58.084 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:49:58.084 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 547 ms.
17-03-18 02:49:58.094 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:49:58.104 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.999021,
17-03-18 02:49:58.144 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:49:58.144 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:49:58.194 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:58.194 -07 000000430 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:49:58.204 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:49:58.204 -07 000000561 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:58.204 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:49:58.204 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.835 mm, average velocity = 2.115 mm/sec
17-03-18 02:49:59.154 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:49:59.154 -07 000000618 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:49:59.164 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.164 -07 000000561 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:49:59.184 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:49:59.184 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:49:59.184 -07 000000561 INF: Y Motor: Moved to 64.8789 after 1451 ms (table move)
17-03-18 02:49:59.194 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137798 mm (DAC = 30102)
17-03-18 02:49:59.194 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.194 -07 000000579 INF: FPGA: Recv ZSGSRD 30740
17-03-18 02:49:59.204 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:49:59.204 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.204 -07 000000590 INF: FPGA: Recv ZSGSRD 30735
17-03-18 02:49:59.214 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.214 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.214 -07 000000467 INF: FPGA: Recv ZSGSRD 30744
17-03-18 02:49:59.224 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.224 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.224 -07 000000444 INF: FPGA: Recv ZSGSRD 30742
17-03-18 02:49:59.234 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.234 -07 000000561 INF: FPGA: Recv ZSGSRD 30743
17-03-18 02:49:59.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.244 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.244 -07 000000424 INF: FPGA: Recv ZSGSRD 30747
17-03-18 02:49:59.254 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.254 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.254 -07 000000455 INF: FPGA: Recv ZSGSRD 30741
17-03-18 02:49:59.264 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:49:59.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.264 -07 000000569 INF: FPGA: Recv ZSGSRD 30734
17-03-18 02:49:59.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.274 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.274 -07 000000444 INF: FPGA: Recv ZSGSRD 30729
17-03-18 02:49:59.284 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:49:59.284 -07 000000561 INF: FPGA: Recv ZSGSRD 30742
17-03-18 02:49:59.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.294 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:49:59.294 -07 000000501 INF: FPGA: Recv ZPIEZORD 26508
17-03-18 02:49:59.304 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:49:59.304 -07 000000606 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -9.3 V.
17-03-18 02:49:59.304 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30740 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30742 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30729 (-136.9 uncal um), Max = 30747 (-137.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:49:59.304 -07 000000606 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30740, posNoise = 7, negNoise = 11
17-03-18 02:49:59.304 -07 000000606 INF: Z Motor: After move to -0.137798, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:49:59.304 -07 000000606 INF: Z Motor: Settle wait time = 1454 ms, measure time = 109 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:49:59.304 -07 000000606 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:49:59.354 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 02:49:59.354 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:49:59.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:49:59.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:49:59.354 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:49:59.354 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:49:59.354 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:49:59.354 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:49:59.354 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:49:59.354 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:49:59.364 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:49:59.364 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:49:59.374 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:49:59.374 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:49:59.374 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:49:59.424 -07 000000590 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:49:59.714 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:49:59.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:49:59.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:49:59.724 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:49:59.754 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:49:59.754 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 02:49:59.754 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 02:49:59.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 02:49:59.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:49:59.844 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:49:59.844 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-18 02:49:59.854 -07 000000569 INF: Autofocus start
17-03-18 02:49:59.854 -07 000000569 INF: MeasureProfile start
17-03-18 02:49:59.854 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:49:59.854 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:49:59.864 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:49:59.864 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:49:59.864 -07 000000569 INF: MeasureProfile done
17-03-18 02:49:59.864 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:49:59.864 -07 000000569 INF: Autofocus finished
17-03-18 02:50:00.064 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:00.064 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:50:00.074 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137803633248867. ----------
17-03-18 02:50:00.074 -07 000000610 INF: Cycle	104	Tile	7	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:00.074 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28626, sync = True, waitForSettling = True)
17-03-18 02:50:00.074 -07 000000610 INF: Z Motor: Moving to -0.131041 mm, started at -0.137804 mm, distance = 6.76 um
17-03-18 02:50:00.074 -07 000000610 INF: FPGA: Xmit ZDACW 28626\n [Z Motor]
17-03-18 02:50:00.074 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:50:00.084 -07 000000610 INF: FPGA: 'ZDACW 28626' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:00.084 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:00.084 -07 000000590 INF: FPGA: Recv ZDACR 28626
17-03-18 02:50:00.094 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.094 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:00.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.244 -07 000000626 INF: FPGA: Recv ZSGSRD 29688
17-03-18 02:50:00.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.254 -07 000000501 INF: FPGA: Recv ZSGSRD 29691
17-03-18 02:50:00.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.264 -07 000000444 INF: FPGA: Recv ZSGSRD 29681
17-03-18 02:50:00.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.274 -07 000000629 INF: FPGA: Recv ZSGSRD 29688
17-03-18 02:50:00.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.284 -07 000000502 INF: FPGA: Recv ZSGSRD 29695
17-03-18 02:50:00.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.294 -07 000000424 INF: FPGA: Recv ZSGSRD 29684
17-03-18 02:50:00.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.304 -07 000000461 INF: FPGA: Recv ZSGSRD 29688
17-03-18 02:50:00.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.314 -07 000000455 INF: FPGA: Recv ZSGSRD 29688
17-03-18 02:50:00.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:50:00.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.324 -07 000000590 INF: FPGA: Recv ZSGSRD 29687
17-03-18 02:50:00.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:00.334 -07 000000576 INF: FPGA: Recv ZSGSRD 29689
17-03-18 02:50:00.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:50:00.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:00.344 -07 000000444 INF: FPGA: Recv ZPIEZORD 25149
17-03-18 02:50:00.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:00.354 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -10.0 V.
17-03-18 02:50:00.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29688 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29688 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29681 (-130.2 uncal um), Max = 29695 (-130.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:50:00.354 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29688, posNoise = 7, negNoise = 7
17-03-18 02:50:00.354 -07 000000610 INF: Z Motor: After move to -0.131041, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:00.354 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:50:00.354 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:00.354 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:00.354 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:00.354 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:00.354 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:00.354 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:00.354 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:00.354 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:00.354 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:50:00.354 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:00.354 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:00.354 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:00.364 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:50:00.364 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:00.364 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:00.364 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:00.374 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:50:00.374 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:50:00.374 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:50:00.374 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:50:00.374 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28803 150\n [Camera]
17-03-18 02:50:00.574 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:00.974 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:00.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:00.974 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:00.974 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:00.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:00.974 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:00.984 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:00.984 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:50:00.984 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:00.984 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:50:01.174 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28803 784
17-03-18 02:50:01.314 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:01.364 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:50:01.364 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:50:01.364 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:01.364 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:50:01.364 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:50:01.364 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:01.364 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:01.364 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:50:01.364 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:01.374 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:50:01.504 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:01.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:01.504 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:01.634 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:01.634 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:01.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:01.634 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:01.634 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:01.634 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:01.634 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:01.644 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:01.644 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:01.694 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:50:01.704 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:01.704 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28803 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-18 02:50:01.704 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:01.704 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131045362075734. ------
17-03-18 02:50:01.704 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:01.704 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13765 mm
17-03-18 02:50:01.704 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:01.704 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:50:01.704 -07 000000467 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:50:01.704 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:01.704 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30069, sync = True, waitForSettling = False)
17-03-18 02:50:01.714 -07 000000424 INF: Z Motor: Moving to -0.137647 mm, started at -0.131045 mm, distance = -6.60 um
17-03-18 02:50:01.714 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:50:01.714 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:01.714 -07 000000626 INF: FPGA: Recv YRDPOS 132873
17-03-18 02:50:01.724 -07 000000467 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:01.724 -07 000000467 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:01.724 -07 000000424 INF: FPGA: Xmit ZDACW 30069\n [Z Motor]
17-03-18 02:50:01.724 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:50:01.724 -07 000000467 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:01.724 -07 000000467 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:50:01.734 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:01.734 -07 000000424 INF: FPGA: 'ZDACW 30069' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:50:01.744 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:01.754 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:01.754 -07 000000606 INF: FPGA: Recv ZDACR 30069
17-03-18 02:50:01.764 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:50:01.764 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:50:01.934 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:01.934 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:50:02.024 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:50:02.024 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:50:02.024 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:02.024 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:02.034 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:50:02.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:50:02.034 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:50:02.034 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:02.034 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:02.034 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-18 02:50:02.114 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:50:02.114 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 02:50:02.164 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:02.164 -07 000000606 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:50:02.174 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:02.174 -07 000000467 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:02.174 -07 000000467 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:50:02.174 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.163 mm/sec
17-03-18 02:50:03.124 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:03.124 -07 000000618 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:50:03.134 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:03.134 -07 000000467 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:03.164 -07 000000467 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:03.164 -07 000000467 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:50:03.164 -07 000000467 INF: Y Motor: Moved to 65.7144 after 1453 ms (table move)
17-03-18 02:50:03.164 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137647 mm (DAC = 30069)
17-03-18 02:50:03.164 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.164 -07 000000455 INF: FPGA: Recv ZSGSRD 30714
17-03-18 02:50:03.174 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:50:03.174 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.174 -07 000000512 INF: FPGA: Recv ZSGSRD 30720
17-03-18 02:50:03.184 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.184 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.184 -07 000000569 INF: FPGA: Recv ZSGSRD 30721
17-03-18 02:50:03.194 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.194 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.194 -07 000000501 INF: FPGA: Recv ZSGSRD 30721
17-03-18 02:50:03.204 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.204 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.204 -07 000000590 INF: FPGA: Recv ZSGSRD 30724
17-03-18 02:50:03.214 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.214 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.214 -07 000000455 INF: FPGA: Recv ZSGSRD 30717
17-03-18 02:50:03.224 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.224 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.224 -07 000000467 INF: FPGA: Recv ZSGSRD 30716
17-03-18 02:50:03.234 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.234 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.234 -07 000000462 INF: FPGA: Recv ZSGSRD 30713
17-03-18 02:50:03.244 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.244 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.244 -07 000000455 INF: FPGA: Recv ZSGSRD 30714
17-03-18 02:50:03.254 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.254 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:03.254 -07 000000424 INF: FPGA: Recv ZSGSRD 30718
17-03-18 02:50:03.264 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.264 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:03.264 -07 000000462 INF: FPGA: Recv ZPIEZORD 26508
17-03-18 02:50:03.274 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:03.274 -07 000000576 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.3 V.
17-03-18 02:50:03.274 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30718 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30718 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30713 (-136.8 uncal um), Max = 30724 (-136.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:50:03.274 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30718, posNoise = 6, negNoise = 5
17-03-18 02:50:03.274 -07 000000576 INF: Z Motor: After move to -0.137647, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:03.274 -07 000000576 INF: Z Motor: Settle wait time = 1455 ms, measure time = 105 ms (allowed 150 ms), total time = 1560 ms
17-03-18 02:50:03.274 -07 000000576 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:03.324 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 02:50:03.324 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:03.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:03.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:03.324 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:03.324 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:03.324 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:03.324 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:03.324 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:03.324 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:03.334 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:03.334 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:03.344 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:50:03.344 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:50:03.344 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:03.394 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:03.464 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.016692,
17-03-18 02:50:03.694 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:03.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:03.694 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:03.694 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:03.724 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:03.734 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:03.734 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:50:03.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:50:03.814 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:03.824 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:50:03.824 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:50:03.834 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:03.834 -07 000000462 INF: Autofocus start
17-03-18 02:50:03.834 -07 000000462 INF: MeasureProfile start
17-03-18 02:50:03.834 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:03.844 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:03.844 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:03.844 -07 000000462 INF: MeasureProfile done
17-03-18 02:50:03.844 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:50:03.844 -07 000000462 INF: Autofocus finished
17-03-18 02:50:04.044 -07 000000455 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:04.044 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:50:04.044 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137662300581748. ----------
17-03-18 02:50:04.044 -07 000000610 INF: Cycle	104	Tile	8	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:04.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28593, sync = True, waitForSettling = True)
17-03-18 02:50:04.054 -07 000000610 INF: Z Motor: Moving to -0.130890 mm, started at -0.137662 mm, distance = 6.77 um
17-03-18 02:50:04.054 -07 000000610 INF: FPGA: Xmit ZDACW 28593\n [Z Motor]
17-03-18 02:50:04.054 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:50:04.064 -07 000000610 INF: FPGA: 'ZDACW 28593' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:50:04.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:04.064 -07 000000579 INF: FPGA: Recv ZDACR 28593
17-03-18 02:50:04.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:04.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.224 -07 000000629 INF: FPGA: Recv ZSGSRD 29665
17-03-18 02:50:04.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:04.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.234 -07 000000590 INF: FPGA: Recv ZSGSRD 29669
17-03-18 02:50:04.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.244 -07 000000569 INF: FPGA: Recv ZSGSRD 29664
17-03-18 02:50:04.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.254 -07 000000606 INF: FPGA: Recv ZSGSRD 29661
17-03-18 02:50:04.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.264 -07 000000618 INF: FPGA: Recv ZSGSRD 29671
17-03-18 02:50:04.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.274 -07 000000561 INF: FPGA: Recv ZSGSRD 29663
17-03-18 02:50:04.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.284 -07 000000591 INF: FPGA: Recv ZSGSRD 29664
17-03-18 02:50:04.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.294 -07 000000430 INF: FPGA: Recv ZSGSRD 29667
17-03-18 02:50:04.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.304 -07 000000606 INF: FPGA: Recv ZSGSRD 29666
17-03-18 02:50:04.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:04.314 -07 000000579 INF: FPGA: Recv ZSGSRD 29668
17-03-18 02:50:04.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:04.324 -07 000000444 INF: FPGA: Recv ZPIEZORD 25151
17-03-18 02:50:04.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:04.334 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.9 V.
17-03-18 02:50:04.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29666 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29666 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29661 (-130.1 uncal um), Max = 29671 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:50:04.334 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29666, posNoise = 5, negNoise = 5
17-03-18 02:50:04.334 -07 000000610 INF: Z Motor: After move to -0.130890, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:04.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:50:04.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:04.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:04.334 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:04.334 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:04.334 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:04.334 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:04.334 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:04.334 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:04.344 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:50:04.344 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:04.344 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:50:04.344 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:04.344 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:04.344 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:04.344 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:50:04.344 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:04.354 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:50:04.354 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:50:04.354 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:50:04.354 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:50:04.354 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28770 150\n [Camera]
17-03-18 02:50:04.564 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:04.964 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:04.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:04.964 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:04.964 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:04.964 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:04.964 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:04.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:04.964 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:04.964 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:04.964 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:05.154 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28770 783
17-03-18 02:50:05.304 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:05.344 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:50:05.344 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:50:05.344 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:05.344 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:05.344 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:50:05.344 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:50:05.344 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:05.344 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:05.354 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:50:05.354 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:50:05.494 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:05.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:05.494 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:05.614 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:05.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:05.614 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:05.614 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:05.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:05.614 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:05.614 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:05.684 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:50:05.684 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:05.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28770 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:50:05.684 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:05.684 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130904029408616. ------
17-03-18 02:50:05.694 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:05.694 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13725 mm
17-03-18 02:50:05.694 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:05.694 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:05.694 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:50:05.694 -07 000000461 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:50:05.694 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29982, sync = True, waitForSettling = False)
17-03-18 02:50:05.694 -07 000000561 INF: Z Motor: Moving to -0.137249 mm, started at -0.130904 mm, distance = -6.34 um
17-03-18 02:50:05.704 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:50:05.704 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:05.704 -07 000000455 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:50:05.714 -07 000000561 INF: FPGA: Xmit ZDACW 29982\n [Z Motor]
17-03-18 02:50:05.714 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:50:05.714 -07 000000461 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:05.714 -07 000000461 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:05.714 -07 000000461 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:50:05.714 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:50:05.724 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:05.724 -07 000000561 INF: FPGA: 'ZDACW 29982' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:50:05.734 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:05.744 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:05.744 -07 000000606 INF: FPGA: Recv ZDACR 29982
17-03-18 02:50:05.754 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:50:05.754 -07 000000561 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:50:05.924 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:05.924 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:50:05.994 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:50:05.994 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:50:05.994 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:05.994 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:50:06.004 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:50:06.004 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:06.004 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:06.004 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:06.004 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-18 02:50:06.004 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:50:06.104 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:50:06.104 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:50:06.154 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:06.154 -07 000000561 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:50:06.164 -07 000000461 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:06.164 -07 000000461 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:06.164 -07 000000461 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:50:06.164 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-18 02:50:06.514 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:06.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:07.114 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:07.114 -07 000000561 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:50:07.124 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:07.124 -07 000000461 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:07.154 -07 000000461 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:07.154 -07 000000461 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:50:07.154 -07 000000461 INF: Y Motor: Moved to 66.5391 after 1455 ms (table move)
17-03-18 02:50:07.154 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137249 mm (DAC = 29982)
17-03-18 02:50:07.154 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.154 -07 000000462 INF: FPGA: Recv ZSGSRD 30659
17-03-18 02:50:07.164 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:07.164 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.164 -07 000000424 INF: FPGA: Recv ZSGSRD 30656
17-03-18 02:50:07.174 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.174 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.174 -07 000000512 INF: FPGA: Recv ZSGSRD 30655
17-03-18 02:50:07.184 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.184 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.184 -07 000000430 INF: FPGA: Recv ZSGSRD 30656
17-03-18 02:50:07.194 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.194 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.194 -07 000000579 INF: FPGA: Recv ZSGSRD 30656
17-03-18 02:50:07.204 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.204 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.204 -07 000000467 INF: FPGA: Recv ZSGSRD 30651
17-03-18 02:50:07.214 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.214 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.214 -07 000000618 INF: FPGA: Recv ZSGSRD 30662
17-03-18 02:50:07.224 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.224 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.224 -07 000000561 INF: FPGA: Recv ZSGSRD 30654
17-03-18 02:50:07.234 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.234 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.234 -07 000000501 INF: FPGA: Recv ZSGSRD 30657
17-03-18 02:50:07.244 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.244 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:07.244 -07 000000430 INF: FPGA: Recv ZSGSRD 30657
17-03-18 02:50:07.254 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.254 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:07.254 -07 000000569 INF: FPGA: Recv ZPIEZORD 26454
17-03-18 02:50:07.264 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:07.264 -07 000000576 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.575 V. Piezo Error = -9.2 V.
17-03-18 02:50:07.264 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30656 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30656 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30651 (-136.4 uncal um), Max = 30662 (-136.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:50:07.264 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30656, posNoise = 6, negNoise = 5
17-03-18 02:50:07.264 -07 000000576 INF: Z Motor: After move to -0.137249, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:07.264 -07 000000576 INF: Z Motor: Settle wait time = 1458 ms, measure time = 107 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:50:07.264 -07 000000576 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:07.314 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:50:07.314 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:07.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:07.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:07.314 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:07.314 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:07.314 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:07.314 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:07.314 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:07.314 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:07.324 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:50:07.324 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:07.334 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:50:07.334 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-18 02:50:07.334 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:07.384 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-18 02:50:07.684 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 02:50:07.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 02:50:07.684 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:07.684 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:07.724 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:07.724 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:07.724 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:50:07.804 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:50:07.804 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:07.804 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:50:07.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:50:07.824 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:07.824 -07 000000424 INF: Autofocus start
17-03-18 02:50:07.824 -07 000000424 INF: MeasureProfile start
17-03-18 02:50:07.824 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:07.834 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:07.834 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:07.834 -07 000000424 INF: MeasureProfile done
17-03-18 02:50:07.844 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:50:07.844 -07 000000424 INF: Autofocus finished
17-03-18 02:50:08.034 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:08.034 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:50:08.034 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137263999428959. ----------
17-03-18 02:50:08.034 -07 000000610 INF: Cycle	104	Tile	9	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:08.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28490, sync = True, waitForSettling = True)
17-03-18 02:50:08.044 -07 000000610 INF: Z Motor: Moving to -0.130419 mm, started at -0.137264 mm, distance = 6.85 um
17-03-18 02:50:08.044 -07 000000610 INF: FPGA: Xmit ZDACW 28490\n [Z Motor]
17-03-18 02:50:08.044 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:50:08.054 -07 000000610 INF: FPGA: 'ZDACW 28490' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:08.054 -07 000000455 INF: FPGA: Recv ZDACR 28490
17-03-18 02:50:08.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:08.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.214 -07 000000467 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:50:08.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:08.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.224 -07 000000430 INF: FPGA: Recv ZSGSRD 29589
17-03-18 02:50:08.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.234 -07 000000462 INF: FPGA: Recv ZSGSRD 29592
17-03-18 02:50:08.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.244 -07 000000591 INF: FPGA: Recv ZSGSRD 29590
17-03-18 02:50:08.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.254 -07 000000569 INF: FPGA: Recv ZSGSRD 29590
17-03-18 02:50:08.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.264 -07 000000561 INF: FPGA: Recv ZSGSRD 29597
17-03-18 02:50:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.274 -07 000000626 INF: FPGA: Recv ZSGSRD 29592
17-03-18 02:50:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.284 -07 000000576 INF: FPGA: Recv ZSGSRD 29589
17-03-18 02:50:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.294 -07 000000579 INF: FPGA: Recv ZSGSRD 29591
17-03-18 02:50:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:08.304 -07 000000590 INF: FPGA: Recv ZSGSRD 29587
17-03-18 02:50:08.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.314 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:08.314 -07 000000467 INF: FPGA: Recv ZPIEZORD 25037
17-03-18 02:50:08.324 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:08.324 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -10.0 V.
17-03-18 02:50:08.324 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29591 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29587 (-129.6 uncal um), Max = 29597 (-129.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:50:08.324 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29591, posNoise = 6, negNoise = 4
17-03-18 02:50:08.324 -07 000000610 INF: Z Motor: After move to -0.130419, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:08.324 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:50:08.324 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:08.324 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:08.324 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:08.324 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:08.324 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:08.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:08.324 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:08.324 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:08.324 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:08.324 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:08.324 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:50:08.324 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:08.334 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:08.334 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:08.334 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:50:08.334 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:08.344 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:50:08.344 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:50:08.344 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:50:08.344 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:50:08.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28666 150\n [Camera]
17-03-18 02:50:08.544 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:08.824 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.052111,
17-03-18 02:50:08.944 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:08.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:08.944 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:08.944 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:08.944 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:08.944 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:08.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:08.944 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:08.944 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:08.944 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:09.134 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28666 783
17-03-18 02:50:09.284 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:09.324 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:50:09.324 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:50:09.324 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:09.324 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:50:09.324 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:50:09.324 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:09.324 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:09.324 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:09.444 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-18 02:50:09.454 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 02:50:09.474 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:09.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:09.474 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:09.474 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:09.484 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:09.484 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:09.484 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:09.484 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:09.484 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:09.484 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:09.664 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:50:09.674 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:09.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28666 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-18 02:50:09.674 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:09.674 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130422213497984. ------
17-03-18 02:50:09.674 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:09.674 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13729 mm
17-03-18 02:50:09.674 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:09.684 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:09.684 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:09.684 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:50:09.684 -07 000000629 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:50:09.684 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:09.684 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29990, sync = True, waitForSettling = False)
17-03-18 02:50:09.684 -07 000000502 INF: Z Motor: Moving to -0.137285 mm, started at -0.130422 mm, distance = -6.86 um
17-03-18 02:50:09.694 -07 000000502 INF: FPGA: Xmit ZDACW 29990\n [Z Motor]
17-03-18 02:50:09.694 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:50:09.704 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:09.704 -07 000000502 INF: FPGA: 'ZDACW 29990' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:50:09.704 -07 000000591 INF: FPGA: Recv YRDPOS 136273
17-03-18 02:50:09.714 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:50:09.714 -07 000000629 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:09.714 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:09.714 -07 000000626 INF: FPGA: Recv ZDACR 29990
17-03-18 02:50:09.714 -07 000000629 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:09.714 -07 000000629 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:50:09.724 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:50:09.724 -07 000000502 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:50:09.724 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:09.874 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:50:09.874 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:50:09.874 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:09.874 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:50:09.874 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:50:09.874 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:09.884 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:09.884 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:50:09.884 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:09.884 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:09.884 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:50:09.894 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-18 02:50:10.094 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:50:10.094 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:50:10.144 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:10.144 -07 000000512 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:50:10.154 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:10.154 -07 000000629 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:10.154 -07 000000629 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 02:50:10.154 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.191 mm/sec
17-03-18 02:50:11.104 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:11.104 -07 000000502 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:50:11.114 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:11.114 -07 000000629 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:11.134 -07 000000629 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:11.134 -07 000000629 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:50:11.134 -07 000000629 INF: Y Motor: Moved to 67.3721 after 1458 ms (table move)
17-03-18 02:50:11.144 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137285 mm (DAC = 29990)
17-03-18 02:50:11.144 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.144 -07 000000467 INF: FPGA: Recv ZSGSRD 30666
17-03-18 02:50:11.154 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:11.154 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.154 -07 000000461 INF: FPGA: Recv ZSGSRD 30654
17-03-18 02:50:11.164 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.164 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.164 -07 000000579 INF: FPGA: Recv ZSGSRD 30667
17-03-18 02:50:11.174 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.174 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.174 -07 000000424 INF: FPGA: Recv ZSGSRD 30658
17-03-18 02:50:11.184 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.184 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.184 -07 000000430 INF: FPGA: Recv ZSGSRD 30665
17-03-18 02:50:11.194 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.194 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.194 -07 000000569 INF: FPGA: Recv ZSGSRD 30660
17-03-18 02:50:11.204 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.204 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.204 -07 000000462 INF: FPGA: Recv ZSGSRD 30656
17-03-18 02:50:11.214 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.214 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.214 -07 000000561 INF: FPGA: Recv ZSGSRD 30666
17-03-18 02:50:11.224 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.224 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.224 -07 000000618 INF: FPGA: Recv ZSGSRD 30655
17-03-18 02:50:11.234 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:11.234 -07 000000591 INF: FPGA: Recv ZSGSRD 30667
17-03-18 02:50:11.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.244 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:11.244 -07 000000461 INF: FPGA: Recv ZPIEZORD 26449
17-03-18 02:50:11.254 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:11.254 -07 000000606 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.3 V.
17-03-18 02:50:11.254 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30661 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30662 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30654 (-136.5 uncal um), Max = 30667 (-136.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:50:11.254 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30661, posNoise = 6, negNoise = 7
17-03-18 02:50:11.254 -07 000000606 INF: Z Motor: After move to -0.137285, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:11.254 -07 000000606 INF: Z Motor: Settle wait time = 1461 ms, measure time = 107 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:50:11.254 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:11.304 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 02:50:11.304 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:11.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:11.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:11.304 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:11.304 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:11.304 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:11.304 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:11.304 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:50:11.304 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:11.314 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:11.314 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:11.314 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:50:11.314 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:50:11.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:11.374 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 02:50:11.514 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:11.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:11.674 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 02:50:11.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 02:50:11.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:11.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:11.704 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:11.704 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:11.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:50:11.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:50:11.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:11.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:50:11.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:50:11.804 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:11.804 -07 000000626 INF: Autofocus start
17-03-18 02:50:11.804 -07 000000626 INF: MeasureProfile start
17-03-18 02:50:11.804 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:11.814 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:11.814 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:11.814 -07 000000626 INF: MeasureProfile done
17-03-18 02:50:11.814 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:50:11.814 -07 000000626 INF: Autofocus finished
17-03-18 02:50:12.014 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:12.014 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:50:12.014 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137296120489668. ----------
17-03-18 02:50:12.024 -07 000000610 INF: Cycle	104	Tile	10	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:12.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28515, sync = True, waitForSettling = True)
17-03-18 02:50:12.024 -07 000000610 INF: Z Motor: Moving to -0.130533 mm, started at -0.137296 mm, distance = 6.76 um
17-03-18 02:50:12.024 -07 000000610 INF: FPGA: Xmit ZDACW 28515\n [Z Motor]
17-03-18 02:50:12.024 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:50:12.034 -07 000000610 INF: FPGA: 'ZDACW 28515' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:12.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:12.034 -07 000000579 INF: FPGA: Recv ZDACR 28515
17-03-18 02:50:12.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:12.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.194 -07 000000467 INF: FPGA: Recv ZSGSRD 29612
17-03-18 02:50:12.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:12.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.204 -07 000000501 INF: FPGA: Recv ZSGSRD 29606
17-03-18 02:50:12.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.214 -07 000000576 INF: FPGA: Recv ZSGSRD 29609
17-03-18 02:50:12.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.224 -07 000000606 INF: FPGA: Recv ZSGSRD 29601
17-03-18 02:50:12.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.234 -07 000000629 INF: FPGA: Recv ZSGSRD 29606
17-03-18 02:50:12.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.244 -07 000000444 INF: FPGA: Recv ZSGSRD 29605
17-03-18 02:50:12.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.254 -07 000000461 INF: FPGA: Recv ZSGSRD 29610
17-03-18 02:50:12.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.264 -07 000000591 INF: FPGA: Recv ZSGSRD 29614
17-03-18 02:50:12.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.274 -07 000000569 INF: FPGA: Recv ZSGSRD 29606
17-03-18 02:50:12.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:12.284 -07 000000424 INF: FPGA: Recv ZSGSRD 29611
17-03-18 02:50:12.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:12.294 -07 000000606 INF: FPGA: Recv ZPIEZORD 25114
17-03-18 02:50:12.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:12.304 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.9 V.
17-03-18 02:50:12.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29608 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29608 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29601 (-129.7 uncal um), Max = 29614 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:50:12.304 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29608, posNoise = 6, negNoise = 7
17-03-18 02:50:12.304 -07 000000610 INF: Z Motor: After move to -0.130533, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:12.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:50:12.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:12.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:12.304 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:12.304 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:12.304 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:12.304 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:12.304 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:12.304 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:12.304 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:12.314 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-18 02:50:12.314 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:12.314 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:12.314 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:50:12.314 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:12.314 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-18 02:50:12.314 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:12.334 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:50:12.334 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 26 ms.
17-03-18 02:50:12.334 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:50:12.334 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 27 ms.
17-03-18 02:50:12.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28691 150\n [Camera]
17-03-18 02:50:12.544 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:12.934 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:12.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:12.944 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:12.944 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:12.944 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:12.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:12.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:12.944 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:12.944 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:12.944 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:13.134 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28691 783
17-03-18 02:50:13.284 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:13.334 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:50:13.334 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:50:13.334 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:13.334 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:50:13.334 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:50:13.334 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:13.334 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:13.334 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:50:13.334 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:13.344 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:50:13.474 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:13.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:13.474 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:13.474 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:13.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:13.474 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:13.474 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:13.474 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:13.474 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:13.474 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:13.664 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:50:13.664 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:13.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28691 150' command took 2 ms to send, 1314 ms to get response, and 1324 ms overall
17-03-18 02:50:13.664 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:13.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130531425104393. ------
17-03-18 02:50:13.664 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:13.664 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13689 mm
17-03-18 02:50:13.674 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:13.674 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:13.674 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29904, sync = True, waitForSettling = False)
17-03-18 02:50:13.674 -07 000000512 INF: Z Motor: Moving to -0.136892 mm, started at -0.130531 mm, distance = -6.36 um
17-03-18 02:50:13.674 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:50:13.674 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:50:13.684 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:13.684 -07 000000512 INF: FPGA: Xmit ZDACW 29904\n [Z Motor]
17-03-18 02:50:13.684 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:50:13.694 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:13.694 -07 000000512 INF: FPGA: 'ZDACW 29904' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:50:13.694 -07 000000462 INF: FPGA: Recv YRDPOS 137979
17-03-18 02:50:13.704 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:13.704 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:50:13.704 -07 000000626 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:13.704 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:13.704 -07 000000626 INF: Y Motor: Moving 1344 steps-22
17-03-18 02:50:13.714 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:13.714 -07 000000579 INF: FPGA: Recv ZDACR 29904
17-03-18 02:50:13.724 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:50:13.724 -07 000000512 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-18 02:50:13.724 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:13.874 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:50:13.874 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:50:13.874 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:13.874 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:50:13.874 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:50:13.874 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:13.874 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:13.874 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:50:13.884 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:13.884 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:50:13.904 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:13.904 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:50:14.094 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:50:14.094 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:50:14.144 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:14.144 -07 000000591 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:50:14.154 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:14.154 -07 000000626 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:14.154 -07 000000626 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:50:14.154 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.133 mm/sec
17-03-18 02:50:14.184 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.024884,
17-03-18 02:50:15.104 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:15.104 -07 000000502 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:50:15.114 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:15.114 -07 000000626 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:15.134 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:15.134 -07 000000626 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:50:15.134 -07 000000626 INF: Y Motor: Moved to 68.2056 after 1462 ms (table move)
17-03-18 02:50:15.134 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136892 mm (DAC = 29904)
17-03-18 02:50:15.134 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.144 -07 000000461 INF: FPGA: Recv ZSGSRD 30603
17-03-18 02:50:15.154 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:15.154 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.154 -07 000000629 INF: FPGA: Recv ZSGSRD 30602
17-03-18 02:50:15.164 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.164 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.164 -07 000000576 INF: FPGA: Recv ZSGSRD 30604
17-03-18 02:50:15.174 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.174 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.174 -07 000000462 INF: FPGA: Recv ZSGSRD 30596
17-03-18 02:50:15.184 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.184 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.184 -07 000000626 INF: FPGA: Recv ZSGSRD 30597
17-03-18 02:50:15.194 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.194 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.194 -07 000000501 INF: FPGA: Recv ZSGSRD 30594
17-03-18 02:50:15.204 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.204 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.204 -07 000000444 INF: FPGA: Recv ZSGSRD 30596
17-03-18 02:50:15.214 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.214 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.214 -07 000000606 INF: FPGA: Recv ZSGSRD 30600
17-03-18 02:50:15.224 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.224 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.224 -07 000000579 INF: FPGA: Recv ZSGSRD 30598
17-03-18 02:50:15.234 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.234 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:15.234 -07 000000502 INF: FPGA: Recv ZSGSRD 30604
17-03-18 02:50:15.244 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.244 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:15.244 -07 000000424 INF: FPGA: Recv ZPIEZORD 26395
17-03-18 02:50:15.254 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:15.254 -07 000000561 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.563 V. Piezo Error = -9.2 V.
17-03-18 02:50:15.254 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30599 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30599 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30594 (-136.1 uncal um), Max = 30604 (-136.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:50:15.254 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30599, posNoise = 5, negNoise = 5
17-03-18 02:50:15.254 -07 000000561 INF: Z Motor: After move to -0.136892, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:15.254 -07 000000561 INF: Z Motor: Settle wait time = 1466 ms, measure time = 112 ms (allowed 150 ms), total time = 1578 ms
17-03-18 02:50:15.254 -07 000000561 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:15.294 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:50:15.294 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:15.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:15.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:15.294 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:15.294 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:15.294 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:15.294 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:15.294 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:15.294 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:15.304 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:15.304 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:15.314 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:50:15.314 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:50:15.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:15.364 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:15.664 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:15.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:15.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:15.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:15.704 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:15.704 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:15.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:50:15.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:50:15.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:15.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:50:15.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:50:15.804 -07 000000606 INF: Autofocus start
17-03-18 02:50:15.804 -07 000000606 INF: MeasureProfile start
17-03-18 02:50:15.804 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:15.804 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:15.814 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:15.814 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:15.814 -07 000000606 INF: MeasureProfile done
17-03-18 02:50:15.814 -07 000000606 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:50:15.814 -07 000000606 INF: Autofocus finished
17-03-18 02:50:16.014 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:16.014 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:50:16.014 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136897819336879. ----------
17-03-18 02:50:16.014 -07 000000610 INF: Cycle	104	Tile	11	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:16.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28399, sync = True, waitForSettling = True)
17-03-18 02:50:16.024 -07 000000610 INF: Z Motor: Moving to -0.130002 mm, started at -0.136898 mm, distance = 6.90 um
17-03-18 02:50:16.024 -07 000000610 INF: FPGA: Xmit ZDACW 28399\n [Z Motor]
17-03-18 02:50:16.024 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:50:16.034 -07 000000610 INF: FPGA: 'ZDACW 28399' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:16.034 -07 000000618 INF: FPGA: Recv ZDACR 28399
17-03-18 02:50:16.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:16.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.194 -07 000000455 INF: FPGA: Recv ZSGSRD 29531
17-03-18 02:50:16.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.204 -07 000000579 INF: FPGA: Recv ZSGSRD 29525
17-03-18 02:50:16.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.214 -07 000000430 INF: FPGA: Recv ZSGSRD 29532
17-03-18 02:50:16.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.224 -07 000000629 INF: FPGA: Recv ZSGSRD 29530
17-03-18 02:50:16.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.234 -07 000000512 INF: FPGA: Recv ZSGSRD 29518
17-03-18 02:50:16.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.244 -07 000000590 INF: FPGA: Recv ZSGSRD 29529
17-03-18 02:50:16.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.254 -07 000000424 INF: FPGA: Recv ZSGSRD 29527
17-03-18 02:50:16.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.264 -07 000000618 INF: FPGA: Recv ZSGSRD 29529
17-03-18 02:50:16.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.274 -07 000000576 INF: FPGA: Recv ZSGSRD 29526
17-03-18 02:50:16.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:16.284 -07 000000591 INF: FPGA: Recv ZSGSRD 29524
17-03-18 02:50:16.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:16.294 -07 000000455 INF: FPGA: Recv ZPIEZORD 25015
17-03-18 02:50:16.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:16.304 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -9.9 V.
17-03-18 02:50:16.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29527 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29528 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29518 (-129.2 uncal um), Max = 29532 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:50:16.304 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29527, posNoise = 5, negNoise = 9
17-03-18 02:50:16.304 -07 000000610 INF: Z Motor: After move to -0.130002, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:16.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:50:16.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:16.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:16.304 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:16.304 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:16.304 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:16.304 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:16.304 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:16.304 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:16.304 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:50:16.304 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:16.304 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:16.304 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:16.314 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:16.314 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:16.314 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:50:16.314 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:16.324 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:50:16.324 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:50:16.324 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:50:16.324 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:50:16.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28576 150\n [Camera]
17-03-18 02:50:16.514 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:16.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:16.524 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:16.924 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:16.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:16.924 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:16.924 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:16.924 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:16.924 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:16.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:16.924 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:16.924 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:16.924 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:17.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28576 783
17-03-18 02:50:17.264 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:17.304 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:50:17.304 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:50:17.304 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:17.304 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:50:17.304 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:50:17.304 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:17.304 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:17.304 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:50:17.304 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:17.314 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:50:17.454 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:17.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:17.454 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:17.574 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:17.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:17.574 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:17.574 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:17.574 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:17.574 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:17.574 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:17.644 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:50:17.644 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:17.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28576 150' command took 2 ms to send, 1316 ms to get response, and 1324 ms overall
17-03-18 02:50:17.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:17.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130011063920911. ------
17-03-18 02:50:17.654 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:17.654 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13672 mm
17-03-18 02:50:17.654 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:17.654 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:50:17.654 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 02:50:17.654 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:17.654 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 29867, sync = True, waitForSettling = False)
17-03-18 02:50:17.654 -07 000000455 INF: Z Motor: Moving to -0.136722 mm, started at -0.130011 mm, distance = -6.71 um
17-03-18 02:50:17.664 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:17.664 -07 000000455 INF: FPGA: Xmit ZDACW 29867\n [Z Motor]
17-03-18 02:50:17.664 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:50:17.674 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:17.674 -07 000000455 INF: FPGA: 'ZDACW 29867' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:50:17.674 -07 000000424 INF: FPGA: Recv YRDPOS 139685
17-03-18 02:50:17.684 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:17.684 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:50:17.684 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:17.684 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:17.684 -07 000000576 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:50:17.694 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:17.694 -07 000000467 INF: FPGA: Recv ZDACR 29867
17-03-18 02:50:17.704 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:17.704 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:50:17.704 -07 000000455 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:50:17.884 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:17.884 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-18 02:50:17.954 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:50:17.954 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:50:17.954 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:17.964 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:17.964 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:50:17.964 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:50:17.964 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:17.964 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:17.964 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-18 02:50:17.964 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:50:18.074 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:50:18.074 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:50:18.124 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:18.124 -07 000000629 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:50:18.134 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:18.134 -07 000000576 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:18.134 -07 000000576 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:50:18.134 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-18 02:50:19.084 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:19.084 -07 000000606 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:50:19.094 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:19.094 -07 000000576 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:19.114 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:19.114 -07 000000576 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:50:19.114 -07 000000576 INF: Y Motor: Moved to 69.0273 after 1462 ms (table move)
17-03-18 02:50:19.124 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136722 mm (DAC = 29867)
17-03-18 02:50:19.144 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.144 -07 000000591 INF: FPGA: Recv ZSGSRD 30575
17-03-18 02:50:19.154 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:50:19.154 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.154 -07 000000590 INF: FPGA: Recv ZSGSRD 30577
17-03-18 02:50:19.164 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:19.174 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.174 -07 000000461 INF: FPGA: Recv ZSGSRD 30579
17-03-18 02:50:19.184 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:50:19.184 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.184 -07 000000629 INF: FPGA: Recv ZSGSRD 30565
17-03-18 02:50:19.194 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:19.214 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.214 -07 000000455 INF: FPGA: Recv ZSGSRD 30577
17-03-18 02:50:19.224 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:50:19.234 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.234 -07 000000461 INF: FPGA: Recv ZSGSRD 30575
17-03-18 02:50:19.244 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:50:19.244 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.244 -07 000000502 INF: FPGA: Recv ZSGSRD 30582
17-03-18 02:50:19.254 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:19.254 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.254 -07 000000606 INF: FPGA: Recv ZSGSRD 30568
17-03-18 02:50:19.264 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:19.264 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.264 -07 000000467 INF: FPGA: Recv ZSGSRD 30563
17-03-18 02:50:19.274 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:19.274 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:19.274 -07 000000626 INF: FPGA: Recv ZSGSRD 30569
17-03-18 02:50:19.284 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:19.284 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:19.284 -07 000000462 INF: FPGA: Recv ZPIEZORD 26385
17-03-18 02:50:19.294 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:19.294 -07 000000618 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -9.2 V.
17-03-18 02:50:19.294 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30573 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30575 (-135.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30563 (-135.9 uncal um), Max = 30582 (-136.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:50:19.294 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30573, posNoise = 9, negNoise = 10
17-03-18 02:50:19.294 -07 000000618 INF: Z Motor: After move to -0.136722, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:19.294 -07 000000618 INF: Z Motor: Settle wait time = 1465 ms, measure time = 168 ms (allowed 150 ms), total time = 1633 ms
17-03-18 02:50:19.294 -07 000000618 INF: Z Motor: Warning: Actual position measuring time = 168 ms, longer than max expected time of 150 ms
17-03-18 02:50:19.294 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1638 ms
17-03-18 02:50:19.294 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:19.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:19.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:19.294 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:19.294 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:19.294 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:19.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:19.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:19.294 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:19.304 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:19.304 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:19.304 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:50:19.304 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 02:50:19.314 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:19.354 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:19.544 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.012614,
17-03-18 02:50:19.654 -07 000000579 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:19.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:19.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:19.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:19.694 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:19.694 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:19.694 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 02:50:19.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:50:19.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:19.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:50:19.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:50:19.794 -07 000000502 INF: Autofocus start
17-03-18 02:50:19.794 -07 000000502 INF: MeasureProfile start
17-03-18 02:50:19.794 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:19.794 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:19.804 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:19.804 -07 000000591 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:19.804 -07 000000502 INF: MeasureProfile done
17-03-18 02:50:19.804 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:50:19.804 -07 000000502 INF: Autofocus finished
17-03-18 02:50:20.004 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:20.004 -07 000000591 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:50:20.004 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136730789821193. ----------
17-03-18 02:50:20.004 -07 000000610 INF: Cycle	104	Tile	12	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:20.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28374, sync = True, waitForSettling = True)
17-03-18 02:50:20.014 -07 000000610 INF: Z Motor: Moving to -0.129888 mm, started at -0.136731 mm, distance = 6.84 um
17-03-18 02:50:20.014 -07 000000610 INF: FPGA: Xmit ZDACW 28374\n [Z Motor]
17-03-18 02:50:20.014 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:50:20.024 -07 000000610 INF: FPGA: 'ZDACW 28374' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:20.024 -07 000000430 INF: FPGA: Recv ZDACR 28374
17-03-18 02:50:20.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:20.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.184 -07 000000502 INF: FPGA: Recv ZSGSRD 29506
17-03-18 02:50:20.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:20.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.194 -07 000000462 INF: FPGA: Recv ZSGSRD 29509
17-03-18 02:50:20.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:50:20.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.204 -07 000000512 INF: FPGA: Recv ZSGSRD 29508
17-03-18 02:50:20.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.214 -07 000000579 INF: FPGA: Recv ZSGSRD 29506
17-03-18 02:50:20.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29505
17-03-18 02:50:20.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.234 -07 000000569 INF: FPGA: Recv ZSGSRD 29510
17-03-18 02:50:20.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.244 -07 000000576 INF: FPGA: Recv ZSGSRD 29505
17-03-18 02:50:20.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.254 -07 000000591 INF: FPGA: Recv ZSGSRD 29509
17-03-18 02:50:20.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.264 -07 000000502 INF: FPGA: Recv ZSGSRD 29510
17-03-18 02:50:20.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:20.274 -07 000000430 INF: FPGA: Recv ZSGSRD 29506
17-03-18 02:50:20.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:20.284 -07 000000626 INF: FPGA: Recv ZPIEZORD 24998
17-03-18 02:50:20.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:20.294 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.9 V.
17-03-18 02:50:20.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29507 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29507 (-129.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29505 (-129.1 uncal um), Max = 29510 (-129.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:50:20.294 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29507, posNoise = 3, negNoise = 2
17-03-18 02:50:20.294 -07 000000610 INF: Z Motor: After move to -0.129888, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:20.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:50:20.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:20.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:20.294 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:20.294 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:20.294 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:20.294 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:20.294 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:20.294 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:20.294 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:50:20.294 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:20.294 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:20.294 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:20.304 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:20.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:20.304 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:50:20.304 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:20.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:50:20.304 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:50:20.314 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:50:20.314 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:50:20.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28551 150\n [Camera]
17-03-18 02:50:20.514 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:20.914 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:20.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:20.914 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:20.914 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:20.914 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:20.914 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:20.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:20.914 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:20.914 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:20.914 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:21.104 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28551 783
17-03-18 02:50:21.254 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:21.294 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:50:21.294 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:50:21.294 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:21.294 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:50:21.294 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:50:21.294 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:21.294 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:21.294 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:50:21.304 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:21.304 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:50:21.444 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:21.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:21.444 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:21.554 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:21.554 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:21.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:21.554 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:21.554 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:21.564 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:21.564 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:21.564 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:21.564 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:21.634 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:50:21.634 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:21.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28551 150' command took 2 ms to send, 1316 ms to get response, and 1323 ms overall
17-03-18 02:50:21.634 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:21.634 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129882579678076. ------
17-03-18 02:50:21.644 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:21.644 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13628 mm
17-03-18 02:50:21.644 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:21.644 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:50:21.644 -07 000000501 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:50:21.644 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29771, sync = True, waitForSettling = False)
17-03-18 02:50:21.644 -07 000000626 INF: Z Motor: Moving to -0.136283 mm, started at -0.129883 mm, distance = -6.40 um
17-03-18 02:50:21.644 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:21.654 -07 000000626 INF: FPGA: Xmit ZDACW 29771\n [Z Motor]
17-03-18 02:50:21.654 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:50:21.654 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:50:21.664 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:21.664 -07 000000626 INF: FPGA: 'ZDACW 29771' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:50:21.664 -07 000000591 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:50:21.674 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:21.674 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:50:21.674 -07 000000501 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:21.674 -07 000000501 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:21.674 -07 000000501 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:50:21.684 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:21.684 -07 000000462 INF: FPGA: Recv ZDACR 29771
17-03-18 02:50:21.694 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:50:21.694 -07 000000626 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:50:21.694 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:21.874 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:21.874 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:50:21.964 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-18 02:50:21.964 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:50:21.964 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:21.964 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-18 02:50:21.964 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:50:21.964 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:21.964 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:21.964 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-18 02:50:21.964 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:21.974 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:50:22.074 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:50:22.074 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 397 ms overall
17-03-18 02:50:22.114 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:22.124 -07 000000618 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:50:22.124 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:50:22.124 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:22.124 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:50:22.124 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-18 02:50:23.074 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:23.074 -07 000000561 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:50:23.084 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:23.084 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:23.104 -07 000000501 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:23.104 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:50:23.104 -07 000000501 INF: Y Motor: Moved to 69.8638 after 1463 ms (table move)
17-03-18 02:50:23.114 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136283 mm (DAC = 29771)
17-03-18 02:50:23.114 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.114 -07 000000618 INF: FPGA: Recv ZSGSRD 30505
17-03-18 02:50:23.124 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:50:23.124 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.124 -07 000000561 INF: FPGA: Recv ZSGSRD 30507
17-03-18 02:50:23.134 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.134 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.134 -07 000000579 INF: FPGA: Recv ZSGSRD 30507
17-03-18 02:50:23.144 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.144 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.144 -07 000000569 INF: FPGA: Recv ZSGSRD 30503
17-03-18 02:50:23.154 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.154 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.154 -07 000000501 INF: FPGA: Recv ZSGSRD 30499
17-03-18 02:50:23.164 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.164 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.164 -07 000000618 INF: FPGA: Recv ZSGSRD 30500
17-03-18 02:50:23.174 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.174 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.174 -07 000000561 INF: FPGA: Recv ZSGSRD 30500
17-03-18 02:50:23.184 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.184 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.184 -07 000000444 INF: FPGA: Recv ZSGSRD 30505
17-03-18 02:50:23.194 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.194 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.194 -07 000000569 INF: FPGA: Recv ZSGSRD 30501
17-03-18 02:50:23.204 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.204 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:23.204 -07 000000455 INF: FPGA: Recv ZSGSRD 30508
17-03-18 02:50:23.214 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.214 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:23.214 -07 000000618 INF: FPGA: Recv ZPIEZORD 26320
17-03-18 02:50:23.224 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:23.224 -07 000000430 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.2 V.
17-03-18 02:50:23.224 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30504 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30504 (-135.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30499 (-135.5 uncal um), Max = 30508 (-135.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:50:23.224 -07 000000430 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30504, posNoise = 4, negNoise = 5
17-03-18 02:50:23.224 -07 000000430 INF: Z Motor: After move to -0.136283, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:23.224 -07 000000430 INF: Z Motor: Settle wait time = 1466 ms, measure time = 108 ms (allowed 150 ms), total time = 1574 ms
17-03-18 02:50:23.224 -07 000000430 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:23.274 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:50:23.274 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:23.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:23.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:23.274 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:23.274 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:23.274 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:23.274 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:23.274 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:23.274 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:23.284 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:23.284 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:23.294 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:50:23.294 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:50:23.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:23.344 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:23.644 -07 000000591 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:23.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:23.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:23.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:23.684 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:23.684 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:23.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:50:23.774 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:50:23.774 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:23.774 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:50:23.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:50:23.784 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:23.784 -07 000000502 INF: Autofocus start
17-03-18 02:50:23.784 -07 000000502 INF: MeasureProfile start
17-03-18 02:50:23.784 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:23.794 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:23.794 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:23.794 -07 000000502 INF: MeasureProfile done
17-03-18 02:50:23.794 -07 000000502 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:50:23.794 -07 000000502 INF: Autofocus finished
17-03-18 02:50:23.994 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:23.994 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:50:23.994 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136287519183411. ----------
17-03-18 02:50:23.994 -07 000000610 INF: Cycle	104	Tile	13	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:24.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28295, sync = True, waitForSettling = True)
17-03-18 02:50:24.004 -07 000000610 INF: Z Motor: Moving to -0.129526 mm, started at -0.136288 mm, distance = 6.76 um
17-03-18 02:50:24.004 -07 000000610 INF: FPGA: Xmit ZDACW 28295\n [Z Motor]
17-03-18 02:50:24.004 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:50:24.014 -07 000000610 INF: FPGA: 'ZDACW 28295' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:24.014 -07 000000569 INF: FPGA: Recv ZDACR 28295
17-03-18 02:50:24.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:24.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.174 -07 000000424 INF: FPGA: Recv ZSGSRD 29454
17-03-18 02:50:24.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.184 -07 000000467 INF: FPGA: Recv ZSGSRD 29460
17-03-18 02:50:24.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.194 -07 000000561 INF: FPGA: Recv ZSGSRD 29452
17-03-18 02:50:24.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.204 -07 000000444 INF: FPGA: Recv ZSGSRD 29448
17-03-18 02:50:24.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.224 -07 000000618 INF: FPGA: Recv ZSGSRD 29459
17-03-18 02:50:24.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:50:24.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.234 -07 000000455 INF: FPGA: Recv ZSGSRD 29450
17-03-18 02:50:24.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.244 -07 000000576 INF: FPGA: Recv ZSGSRD 29452
17-03-18 02:50:24.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.254 -07 000000561 INF: FPGA: Recv ZSGSRD 29451
17-03-18 02:50:24.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.264 -07 000000576 INF: FPGA: Recv ZSGSRD 29455
17-03-18 02:50:24.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:24.274 -07 000000579 INF: FPGA: Recv ZSGSRD 29450
17-03-18 02:50:24.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:24.284 -07 000000455 INF: FPGA: Recv ZPIEZORD 24956
17-03-18 02:50:24.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:24.294 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -9.9 V.
17-03-18 02:50:24.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29453 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29452 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29448 (-128.7 uncal um), Max = 29460 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:50:24.294 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29453, posNoise = 7, negNoise = 5
17-03-18 02:50:24.294 -07 000000610 INF: Z Motor: After move to -0.129526, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:24.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:50:24.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:24.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:24.294 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:24.294 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:24.294 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:24.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:24.294 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:24.294 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:24.294 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:50:24.294 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:24.294 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:24.294 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:24.294 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:24.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:24.304 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:50:24.304 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:24.314 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:50:24.314 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:50:24.314 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:50:24.314 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:50:24.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28471 150\n [Camera]
17-03-18 02:50:24.514 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:24.904 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.007176,
17-03-18 02:50:24.914 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:24.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:24.914 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:24.914 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:24.914 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:24.914 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:24.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:24.914 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:24.914 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:24.914 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:25.104 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28471 783
17-03-18 02:50:25.254 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:25.294 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:50:25.294 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:50:25.294 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:25.294 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:50:25.294 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:50:25.294 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:25.294 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:25.294 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:50:25.304 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:25.304 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:50:25.554 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:25.554 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:25.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:25.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:25.564 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:25.564 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:25.564 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:25.564 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:25.564 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:25.564 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:25.634 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:50:25.634 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:25.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28471 150' command took 2 ms to send, 1318 ms to get response, and 1323 ms overall
17-03-18 02:50:25.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:25.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.12953567222242. ------
17-03-18 02:50:25.644 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13554 mm
17-03-18 02:50:25.644 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:25.644 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:25.644 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:50:25.644 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-18 02:50:25.644 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:25.644 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29609, sync = True, waitForSettling = False)
17-03-18 02:50:25.644 -07 000000618 INF: Z Motor: Moving to -0.135541 mm, started at -0.129536 mm, distance = -6.01 um
17-03-18 02:50:25.654 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:25.654 -07 000000618 INF: FPGA: Xmit ZDACW 29609\n [Z Motor]
17-03-18 02:50:25.654 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:50:25.664 -07 000000618 INF: FPGA: 'ZDACW 29609' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:50:25.664 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:25.664 -07 000000461 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:50:25.674 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:25.674 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:50:25.674 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:25.674 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:25.674 -07 000000501 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:50:25.684 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:25.684 -07 000000576 INF: FPGA: Recv ZDACR 29609
17-03-18 02:50:25.694 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:25.694 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:50:25.694 -07 000000618 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:50:25.874 -07 000000467 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:25.874 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:50:25.944 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:50:25.944 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:50:25.944 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:25.954 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:25.954 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:50:25.954 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:50:25.954 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:25.954 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:25.954 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:50:25.954 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:50:26.064 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:50:26.064 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:50:26.114 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:26.114 -07 000000629 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:50:26.124 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:26.124 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:26.124 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:50:26.124 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-18 02:50:26.514 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:26.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:27.074 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:27.074 -07 000000579 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:50:27.084 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:27.084 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:27.104 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:27.104 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:50:27.104 -07 000000501 INF: Y Motor: Moved to 70.6885 after 1460 ms (table move)
17-03-18 02:50:27.114 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135541 mm (DAC = 29609)
17-03-18 02:50:27.114 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.114 -07 000000561 INF: FPGA: Recv ZSGSRD 30391
17-03-18 02:50:27.124 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:50:27.124 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.124 -07 000000579 INF: FPGA: Recv ZSGSRD 30390
17-03-18 02:50:27.134 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.134 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.134 -07 000000576 INF: FPGA: Recv ZSGSRD 30395
17-03-18 02:50:27.144 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.144 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.144 -07 000000618 INF: FPGA: Recv ZSGSRD 30389
17-03-18 02:50:27.154 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.154 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.154 -07 000000569 INF: FPGA: Recv ZSGSRD 30391
17-03-18 02:50:27.164 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.164 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.164 -07 000000501 INF: FPGA: Recv ZSGSRD 30394
17-03-18 02:50:27.174 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.174 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.174 -07 000000444 INF: FPGA: Recv ZSGSRD 30393
17-03-18 02:50:27.184 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.184 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.184 -07 000000424 INF: FPGA: Recv ZSGSRD 30386
17-03-18 02:50:27.194 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.194 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.194 -07 000000561 INF: FPGA: Recv ZSGSRD 30387
17-03-18 02:50:27.204 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.204 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:27.204 -07 000000502 INF: FPGA: Recv ZSGSRD 30396
17-03-18 02:50:27.214 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.214 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:27.214 -07 000000462 INF: FPGA: Recv ZPIEZORD 26191
17-03-18 02:50:27.224 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:27.224 -07 000000590 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.518 V. Piezo Error = -9.2 V.
17-03-18 02:50:27.224 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30391 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30391 (-134.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30386 (-134.7 uncal um), Max = 30396 (-134.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:50:27.224 -07 000000590 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30391, posNoise = 5, negNoise = 5
17-03-18 02:50:27.224 -07 000000590 INF: Z Motor: After move to -0.135541, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:27.224 -07 000000590 INF: Z Motor: Settle wait time = 1463 ms, measure time = 108 ms (allowed 150 ms), total time = 1571 ms
17-03-18 02:50:27.224 -07 000000590 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:27.274 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-18 02:50:27.274 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:27.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:27.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:27.274 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:27.274 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:27.274 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:27.274 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:27.274 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:50:27.274 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:27.284 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:27.284 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:27.294 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:50:27.294 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:50:27.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:27.344 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:27.644 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:27.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:27.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:27.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:27.684 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:27.684 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:27.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall
17-03-18 02:50:27.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:50:27.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:27.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:50:27.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:50:27.784 -07 000000502 INF: Autofocus start
17-03-18 02:50:27.784 -07 000000502 INF: MeasureProfile start
17-03-18 02:50:27.784 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:27.784 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:27.794 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:27.794 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:27.794 -07 000000502 INF: MeasureProfile done
17-03-18 02:50:27.794 -07 000000502 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:50:27.794 -07 000000502 INF: Autofocus finished
17-03-18 02:50:27.994 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:27.994 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:50:27.994 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135561583211392. ----------
17-03-18 02:50:27.994 -07 000000610 INF: Cycle	104	Tile	14	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:28.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28104, sync = True, waitForSettling = True)
17-03-18 02:50:28.004 -07 000000610 INF: Z Motor: Moving to -0.128652 mm, started at -0.135562 mm, distance = 6.91 um
17-03-18 02:50:28.004 -07 000000610 INF: FPGA: Xmit ZDACW 28104\n [Z Motor]
17-03-18 02:50:28.004 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:50:28.014 -07 000000610 INF: FPGA: 'ZDACW 28104' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:28.014 -07 000000424 INF: FPGA: Recv ZDACR 28104
17-03-18 02:50:28.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:28.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.174 -07 000000629 INF: FPGA: Recv ZSGSRD 29320
17-03-18 02:50:28.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:28.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.184 -07 000000430 INF: FPGA: Recv ZSGSRD 29319
17-03-18 02:50:28.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.194 -07 000000467 INF: FPGA: Recv ZSGSRD 29313
17-03-18 02:50:28.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.204 -07 000000444 INF: FPGA: Recv ZSGSRD 29313
17-03-18 02:50:28.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.214 -07 000000579 INF: FPGA: Recv ZSGSRD 29317
17-03-18 02:50:28.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29322
17-03-18 02:50:28.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.234 -07 000000618 INF: FPGA: Recv ZSGSRD 29318
17-03-18 02:50:28.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.244 -07 000000424 INF: FPGA: Recv ZSGSRD 29314
17-03-18 02:50:28.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.254 -07 000000629 INF: FPGA: Recv ZSGSRD 29319
17-03-18 02:50:28.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:28.264 -07 000000461 INF: FPGA: Recv ZSGSRD 29317
17-03-18 02:50:28.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:28.274 -07 000000590 INF: FPGA: Recv ZPIEZORD 24813
17-03-18 02:50:28.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:28.284 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.9 V.
17-03-18 02:50:28.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29317 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29318 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29313 (-127.9 uncal um), Max = 29322 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:50:28.284 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29317, posNoise = 5, negNoise = 4
17-03-18 02:50:28.284 -07 000000610 INF: Z Motor: After move to -0.128652, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:28.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:50:28.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:28.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:28.284 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:28.284 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:28.284 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:28.284 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:28.284 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:28.284 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:28.284 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:50:28.284 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:28.284 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:50:28.284 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:28.284 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:28.284 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:28.294 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:50:28.294 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:28.304 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-18 02:50:28.304 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:50:28.304 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:50:28.304 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:50:28.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28281 150\n [Camera]
17-03-18 02:50:28.504 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:28.904 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:28.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:28.904 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:28.904 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:28.904 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:28.904 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:28.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:28.904 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:28.904 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:28.904 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:29.094 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28281 783
17-03-18 02:50:29.244 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:29.284 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:50:29.284 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:50:29.284 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:29.284 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:50:29.284 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:50:29.284 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:29.284 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:29.284 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:50:29.284 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:29.294 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:50:29.434 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:29.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:29.434 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:29.554 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:29.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:29.554 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:29.554 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:29.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:29.554 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:29.554 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:29.624 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:50:29.624 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:29.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28281 150' command took 2 ms to send, 1317 ms to get response, and 1323 ms overall
17-03-18 02:50:29.624 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:29.624 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128661979371141. ------
17-03-18 02:50:29.634 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:29.634 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13533 mm
17-03-18 02:50:29.634 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:29.634 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:29.634 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29563, sync = True, waitForSettling = False)
17-03-18 02:50:29.634 -07 000000618 INF: Z Motor: Moving to -0.135331 mm, started at -0.128662 mm, distance = -6.67 um
17-03-18 02:50:29.634 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:50:29.634 -07 000000606 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:50:29.644 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:29.644 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:29.644 -07 000000467 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:50:29.654 -07 000000618 INF: FPGA: Xmit ZDACW 29563\n [Z Motor]
17-03-18 02:50:29.654 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:50:29.654 -07 000000606 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:29.654 -07 000000606 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:29.654 -07 000000606 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:50:29.654 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:50:29.664 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:29.664 -07 000000618 INF: FPGA: 'ZDACW 29563' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:50:29.674 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:29.684 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:29.684 -07 000000467 INF: FPGA: Recv ZDACR 29563
17-03-18 02:50:29.694 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:50:29.694 -07 000000618 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:50:29.864 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:29.864 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:50:29.954 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:50:29.954 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:50:29.954 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:29.954 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 02:50:29.954 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:50:29.954 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:29.954 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:29.954 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-18 02:50:29.954 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:29.964 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:50:30.044 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:50:30.044 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 396 ms overall
17-03-18 02:50:30.094 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:30.094 -07 000000626 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:50:30.104 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:30.104 -07 000000606 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:30.104 -07 000000606 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:50:30.104 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.132 mm/sec
17-03-18 02:50:30.264 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 3.981281,
17-03-18 02:50:31.054 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:31.054 -07 000000461 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:50:31.064 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:31.064 -07 000000606 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:31.084 -07 000000606 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:31.084 -07 000000606 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:50:31.084 -07 000000606 INF: Y Motor: Moved to 71.5190 after 1450 ms (table move)
17-03-18 02:50:31.094 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135331 mm (DAC = 29563)
17-03-18 02:50:31.094 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.094 -07 000000444 INF: FPGA: Recv ZSGSRD 30354
17-03-18 02:50:31.104 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:50:31.104 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.104 -07 000000430 INF: FPGA: Recv ZSGSRD 30360
17-03-18 02:50:31.114 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.114 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.114 -07 000000424 INF: FPGA: Recv ZSGSRD 30360
17-03-18 02:50:31.124 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.124 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.124 -07 000000561 INF: FPGA: Recv ZSGSRD 30360
17-03-18 02:50:31.134 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.134 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.134 -07 000000618 INF: FPGA: Recv ZSGSRD 30356
17-03-18 02:50:31.144 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.144 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.144 -07 000000629 INF: FPGA: Recv ZSGSRD 30354
17-03-18 02:50:31.154 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.154 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.154 -07 000000430 INF: FPGA: Recv ZSGSRD 30358
17-03-18 02:50:31.164 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.164 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.164 -07 000000569 INF: FPGA: Recv ZSGSRD 30356
17-03-18 02:50:31.174 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.174 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.174 -07 000000606 INF: FPGA: Recv ZSGSRD 30350
17-03-18 02:50:31.184 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.184 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:31.184 -07 000000618 INF: FPGA: Recv ZSGSRD 30358
17-03-18 02:50:31.194 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.194 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:31.194 -07 000000629 INF: FPGA: Recv ZPIEZORD 26200
17-03-18 02:50:31.204 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.204 -07 000000576 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -9.1 V.
17-03-18 02:50:31.204 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30357 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30357 (-134.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30350 (-134.5 uncal um), Max = 30360 (-134.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:50:31.204 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30357, posNoise = 3, negNoise = 7
17-03-18 02:50:31.204 -07 000000576 INF: Z Motor: After move to -0.135331, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:31.204 -07 000000576 INF: Z Motor: Settle wait time = 1454 ms, measure time = 110 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:50:31.204 -07 000000576 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:31.244 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:50:31.244 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:31.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:31.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:31.244 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:31.244 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:31.244 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:31.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:31.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:31.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:31.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:31.254 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:31.264 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:50:31.264 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:50:31.264 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:31.314 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:31.514 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:31.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:31.614 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:31.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:31.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:31.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:31.644 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:31.654 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:31.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:50:31.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:50:31.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:31.744 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:50:31.744 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:50:31.754 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:31.754 -07 000000576 INF: Autofocus start
17-03-18 02:50:31.754 -07 000000576 INF: MeasureProfile start
17-03-18 02:50:31.754 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:31.764 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:31.764 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:31.764 -07 000000576 INF: MeasureProfile done
17-03-18 02:50:31.764 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:50:31.764 -07 000000576 INF: Autofocus finished
17-03-18 02:50:31.964 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:31.964 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:50:31.964 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135343159998572. ----------
17-03-18 02:50:31.964 -07 000000610 INF: Cycle	104	Tile	15	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:31.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28071, sync = True, waitForSettling = True)
17-03-18 02:50:31.974 -07 000000610 INF: Z Motor: Moving to -0.128501 mm, started at -0.135343 mm, distance = 6.84 um
17-03-18 02:50:31.974 -07 000000610 INF: FPGA: Xmit ZDACW 28071\n [Z Motor]
17-03-18 02:50:31.974 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:50:31.984 -07 000000610 INF: FPGA: 'ZDACW 28071' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:50:31.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:31.984 -07 000000606 INF: FPGA: Recv ZDACR 28071
17-03-18 02:50:31.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:31.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:32.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.144 -07 000000461 INF: FPGA: Recv ZSGSRD 29294
17-03-18 02:50:32.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.154 -07 000000629 INF: FPGA: Recv ZSGSRD 29295
17-03-18 02:50:32.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.164 -07 000000455 INF: FPGA: Recv ZSGSRD 29286
17-03-18 02:50:32.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.174 -07 000000576 INF: FPGA: Recv ZSGSRD 29297
17-03-18 02:50:32.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.184 -07 000000502 INF: FPGA: Recv ZSGSRD 29294
17-03-18 02:50:32.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.194 -07 000000626 INF: FPGA: Recv ZSGSRD 29293
17-03-18 02:50:32.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.204 -07 000000579 INF: FPGA: Recv ZSGSRD 29298
17-03-18 02:50:32.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.214 -07 000000626 INF: FPGA: Recv ZSGSRD 29290
17-03-18 02:50:32.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.224 -07 000000629 INF: FPGA: Recv ZSGSRD 29295
17-03-18 02:50:32.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:32.234 -07 000000424 INF: FPGA: Recv ZSGSRD 29292
17-03-18 02:50:32.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:32.244 -07 000000629 INF: FPGA: Recv ZPIEZORD 24795
17-03-18 02:50:32.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:32.254 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.283 V. Piezo Error = -9.9 V.
17-03-18 02:50:32.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29293 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29294 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29286 (-127.7 uncal um), Max = 29298 (-127.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:50:32.254 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29293, posNoise = 5, negNoise = 7
17-03-18 02:50:32.254 -07 000000610 INF: Z Motor: After move to -0.128501, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:32.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:50:32.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:32.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:32.254 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:32.254 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:32.254 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:32.254 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:32.254 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:32.254 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:32.264 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:50:32.264 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:50:32.264 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:32.264 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:32.264 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:32.264 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:32.264 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 02:50:32.264 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:32.274 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:50:32.274 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:50:32.274 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:50:32.274 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:50:32.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28247 150\n [Camera]
17-03-18 02:50:32.474 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:32.874 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:50:32.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:50:32.874 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:32.874 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:32.874 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:32.884 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:50:32.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:50:32.884 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:32.884 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:32.884 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:33.064 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28247 783
17-03-18 02:50:33.214 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:33.264 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:50:33.264 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:50:33.264 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:33.264 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:50:33.264 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:50:33.264 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:33.264 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:33.264 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:50:33.264 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:33.274 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:50:33.414 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:33.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:33.414 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:33.524 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:33.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:33.534 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:33.534 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:33.534 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:33.534 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:33.534 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:33.604 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1317
17-03-18 02:50:33.604 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:33.604 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28247 150' command took 2 ms to send, 1312 ms to get response, and 1323 ms overall
17-03-18 02:50:33.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:33.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128507798279739. ------
17-03-18 02:50:33.604 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:33.604 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13479 mm
17-03-18 02:50:33.604 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:33.604 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29444, sync = True, waitForSettling = False)
17-03-18 02:50:33.614 -07 000000462 INF: Z Motor: Moving to -0.134786 mm, started at -0.128508 mm, distance = -6.28 um
17-03-18 02:50:33.614 -07 000000462 INF: FPGA: Xmit ZDACW 29444\n [Z Motor]
17-03-18 02:50:33.614 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:33.614 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:50:33.614 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:50:33.614 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:50:33.614 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:50:33.624 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:33.624 -07 000000462 INF: FPGA: 'ZDACW 29444' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:33.624 -07 000000461 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:50:33.634 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:33.634 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:50:33.634 -07 000000618 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:33.634 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:33.634 -07 000000618 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:50:33.644 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:33.644 -07 000000512 INF: FPGA: Recv ZDACR 29444
17-03-18 02:50:33.654 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:50:33.654 -07 000000462 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-18 02:50:33.654 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:33.834 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:33.834 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 02:50:33.914 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:50:33.914 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:50:33.914 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:33.914 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:50:33.914 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:50:33.914 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:33.924 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:33.924 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:33.924 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-18 02:50:33.924 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:50:34.024 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:50:34.024 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:50:34.074 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:34.074 -07 000000455 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:50:34.084 -07 000000618 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:34.084 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:34.084 -07 000000618 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:50:34.084 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-18 02:50:35.034 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:35.034 -07 000000579 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:50:35.044 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:35.044 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:35.064 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:35.064 -07 000000618 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:50:35.064 -07 000000618 INF: Y Motor: Moved to 72.3496 after 1457 ms (table move)
17-03-18 02:50:35.074 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134786 mm (DAC = 29444)
17-03-18 02:50:35.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.074 -07 000000512 INF: FPGA: Recv ZSGSRD 30269
17-03-18 02:50:35.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:50:35.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.084 -07 000000590 INF: FPGA: Recv ZSGSRD 30266
17-03-18 02:50:35.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.094 -07 000000430 INF: FPGA: Recv ZSGSRD 30272
17-03-18 02:50:35.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.104 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.104 -07 000000576 INF: FPGA: Recv ZSGSRD 30268
17-03-18 02:50:35.114 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.114 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.114 -07 000000561 INF: FPGA: Recv ZSGSRD 30270
17-03-18 02:50:35.124 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.124 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.124 -07 000000512 INF: FPGA: Recv ZSGSRD 30270
17-03-18 02:50:35.134 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.134 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.134 -07 000000455 INF: FPGA: Recv ZSGSRD 30272
17-03-18 02:50:35.144 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.144 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.144 -07 000000626 INF: FPGA: Recv ZSGSRD 30271
17-03-18 02:50:35.154 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.154 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.154 -07 000000424 INF: FPGA: Recv ZSGSRD 30264
17-03-18 02:50:35.164 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.164 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:35.164 -07 000000561 INF: FPGA: Recv ZSGSRD 30271
17-03-18 02:50:35.174 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.174 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:35.174 -07 000000462 INF: FPGA: Recv ZPIEZORD 26047
17-03-18 02:50:35.184 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.184 -07 000000569 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.493 V. Piezo Error = -9.3 V.
17-03-18 02:50:35.184 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30269 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30270 (-134.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30264 (-134.0 uncal um), Max = 30272 (-134.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:50:35.184 -07 000000569 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30269, posNoise = 3, negNoise = 5
17-03-18 02:50:35.184 -07 000000569 INF: Z Motor: After move to -0.134786, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:35.184 -07 000000569 INF: Z Motor: Settle wait time = 1461 ms, measure time = 109 ms (allowed 150 ms), total time = 1570 ms
17-03-18 02:50:35.184 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:35.234 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-18 02:50:35.234 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:35.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:35.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:35.234 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:35.234 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:35.234 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:35.234 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:35.234 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:50:35.234 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:35.244 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:35.244 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:35.254 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:50:35.254 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:50:35.274 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:35.314 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:35.614 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:35.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:35.614 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:35.614 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:35.624 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.009895,
17-03-18 02:50:35.654 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:35.654 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:35.654 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 399 ms overall
17-03-18 02:50:35.734 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:50:35.734 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:35.734 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:50:35.734 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:50:35.754 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:35.754 -07 000000424 INF: Autofocus start
17-03-18 02:50:35.754 -07 000000424 INF: MeasureProfile start
17-03-18 02:50:35.754 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:35.764 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:35.764 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:35.764 -07 000000424 INF: MeasureProfile done
17-03-18 02:50:35.764 -07 000000424 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:50:35.774 -07 000000424 INF: Autofocus finished
17-03-18 02:50:35.964 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:35.964 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 02:50:35.964 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134777829330097. ----------
17-03-18 02:50:35.964 -07 000000610 INF: Cycle	104	Tile	16	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:35.974 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27969, sync = True, waitForSettling = True)
17-03-18 02:50:35.974 -07 000000610 INF: Z Motor: Moving to -0.128034 mm, started at -0.134778 mm, distance = 6.74 um
17-03-18 02:50:35.974 -07 000000610 INF: FPGA: Xmit ZDACW 27969\n [Z Motor]
17-03-18 02:50:35.974 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:50:35.984 -07 000000610 INF: FPGA: 'ZDACW 27969' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:50:35.984 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:35.984 -07 000000591 INF: FPGA: Recv ZDACR 27969
17-03-18 02:50:35.994 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:35.994 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:36.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.144 -07 000000430 INF: FPGA: Recv ZSGSRD 29218
17-03-18 02:50:36.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:36.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.154 -07 000000606 INF: FPGA: Recv ZSGSRD 29222
17-03-18 02:50:36.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.164 -07 000000626 INF: FPGA: Recv ZSGSRD 29218
17-03-18 02:50:36.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.174 -07 000000629 INF: FPGA: Recv ZSGSRD 29222
17-03-18 02:50:36.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.184 -07 000000502 INF: FPGA: Recv ZSGSRD 29228
17-03-18 02:50:36.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.194 -07 000000591 INF: FPGA: Recv ZSGSRD 29218
17-03-18 02:50:36.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.204 -07 000000579 INF: FPGA: Recv ZSGSRD 29222
17-03-18 02:50:36.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.214 -07 000000626 INF: FPGA: Recv ZSGSRD 29221
17-03-18 02:50:36.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.224 -07 000000455 INF: FPGA: Recv ZSGSRD 29217
17-03-18 02:50:36.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:36.234 -07 000000618 INF: FPGA: Recv ZSGSRD 29217
17-03-18 02:50:36.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:36.244 -07 000000430 INF: FPGA: Recv ZPIEZORD 24683
17-03-18 02:50:36.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:36.254 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.268 V. Piezo Error = -9.9 V.
17-03-18 02:50:36.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29220 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29220 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29217 (-127.2 uncal um), Max = 29228 (-127.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:50:36.254 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29220, posNoise = 8, negNoise = 3
17-03-18 02:50:36.254 -07 000000610 INF: Z Motor: After move to -0.128034, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:36.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:50:36.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:36.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:36.254 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:36.254 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:36.254 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:36.254 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:36.254 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:36.254 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:36.254 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:50:36.254 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:36.254 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:50:36.254 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:36.254 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:36.254 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:36.264 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:50:36.264 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:36.264 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:50:36.264 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:50:36.274 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:50:36.274 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:50:36.274 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28145 150\n [Camera]
17-03-18 02:50:36.474 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:36.514 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:36.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:36.874 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:36.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:36.874 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:36.874 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:36.874 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:36.874 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:36.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:36.874 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:36.874 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:36.874 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:37.064 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28145 783
17-03-18 02:50:37.214 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:37.244 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:50:37.244 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:50:37.244 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:37.244 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:50:37.244 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:50:37.244 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:37.254 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:37.254 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:37.254 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:50:37.264 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:50:37.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:37.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:37.404 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:37.404 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:37.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:37.414 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:37.414 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:37.414 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:37.414 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:37.414 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:37.594 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:50:37.594 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:37.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28145 150' command took 2 ms to send, 1318 ms to get response, and 1323 ms overall
17-03-18 02:50:37.604 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:37.604 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.12803883079339. ------
17-03-18 02:50:37.604 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:37.604 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13462 mm
17-03-18 02:50:37.604 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:37.604 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:50:37.604 -07 000000430 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 02:50:37.604 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29408, sync = True, waitForSettling = False)
17-03-18 02:50:37.604 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:37.614 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:37.614 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:37.614 -07 000000629 INF: Z Motor: Moving to -0.134621 mm, started at -0.128039 mm, distance = -6.58 um
17-03-18 02:50:37.614 -07 000000461 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:50:37.624 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:50:37.624 -07 000000430 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:37.624 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:37.624 -07 000000430 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:37.624 -07 000000430 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:50:37.634 -07 000000629 INF: FPGA: Xmit ZDACW 29408\n [Z Motor]
17-03-18 02:50:37.634 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:50:37.644 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:37.644 -07 000000629 INF: FPGA: 'ZDACW 29408' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:50:37.654 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:37.654 -07 000000444 INF: FPGA: Recv ZDACR 29408
17-03-18 02:50:37.664 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:50:37.664 -07 000000629 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:50:37.794 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:50:37.794 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:50:37.794 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:37.794 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:37.804 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:50:37.804 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:50:37.804 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:37.804 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:50:37.804 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:37.804 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:50:37.824 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:37.824 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-18 02:50:38.014 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:50:38.014 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:50:38.064 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:38.064 -07 000000512 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:50:38.074 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:38.074 -07 000000430 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:38.074 -07 000000430 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:50:38.074 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.156 mm/sec
17-03-18 02:50:39.024 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:39.024 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:50:39.034 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.034 -07 000000430 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:39.064 -07 000000430 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:39.064 -07 000000430 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:50:39.064 -07 000000430 INF: Y Motor: Moved to 73.1763 after 1462 ms (table move)
17-03-18 02:50:39.074 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134621 mm (DAC = 29408)
17-03-18 02:50:39.074 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.074 -07 000000512 INF: FPGA: Recv ZSGSRD 30248
17-03-18 02:50:39.084 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:39.084 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.084 -07 000000629 INF: FPGA: Recv ZSGSRD 30245
17-03-18 02:50:39.094 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.094 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.094 -07 000000501 INF: FPGA: Recv ZSGSRD 30251
17-03-18 02:50:39.104 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.104 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.104 -07 000000502 INF: FPGA: Recv ZSGSRD 30244
17-03-18 02:50:39.114 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.114 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.114 -07 000000461 INF: FPGA: Recv ZSGSRD 30244
17-03-18 02:50:39.124 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.124 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.124 -07 000000512 INF: FPGA: Recv ZSGSRD 30246
17-03-18 02:50:39.134 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.134 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.134 -07 000000576 INF: FPGA: Recv ZSGSRD 30246
17-03-18 02:50:39.144 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.144 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.144 -07 000000501 INF: FPGA: Recv ZSGSRD 30239
17-03-18 02:50:39.154 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.154 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.154 -07 000000626 INF: FPGA: Recv ZSGSRD 30243
17-03-18 02:50:39.164 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.164 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:39.164 -07 000000461 INF: FPGA: Recv ZSGSRD 30248
17-03-18 02:50:39.174 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.174 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:39.174 -07 000000512 INF: FPGA: Recv ZPIEZORD 26034
17-03-18 02:50:39.184 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.184 -07 000000424 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.487 V. Piezo Error = -9.3 V.
17-03-18 02:50:39.184 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30245 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30246 (-133.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30239 (-133.8 uncal um), Max = 30251 (-133.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:50:39.184 -07 000000424 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30245, posNoise = 6, negNoise = 6
17-03-18 02:50:39.184 -07 000000424 INF: Z Motor: After move to -0.134621, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:39.184 -07 000000424 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 02:50:39.184 -07 000000424 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:39.234 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1626 ms
17-03-18 02:50:39.234 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:39.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:39.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:39.234 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:39.234 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:39.234 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:39.234 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:39.234 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:50:39.234 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:39.244 -07 000000461 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:39.244 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:39.244 -07 000000461 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 02:50:39.244 -07 000000461 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:50:39.254 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:39.294 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:39.594 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:39.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:39.594 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:39.594 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:39.634 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:39.634 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:39.634 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:50:39.714 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:50:39.714 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:39.714 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:50:39.714 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:50:39.734 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:39.734 -07 000000590 INF: Autofocus start
17-03-18 02:50:39.734 -07 000000590 INF: MeasureProfile start
17-03-18 02:50:39.734 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:39.744 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:50:39.744 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:39.744 -07 000000590 INF: MeasureProfile done
17-03-18 02:50:39.744 -07 000000590 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:50:39.744 -07 000000590 INF: Autofocus finished
17-03-18 02:50:39.944 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:39.944 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:50:39.944 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134623648238695. ----------
17-03-18 02:50:39.944 -07 000000610 INF: Cycle	104	Tile	17	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:39.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27915, sync = True, waitForSettling = True)
17-03-18 02:50:39.954 -07 000000610 INF: Z Motor: Moving to -0.127787 mm, started at -0.134624 mm, distance = 6.84 um
17-03-18 02:50:39.954 -07 000000610 INF: FPGA: Xmit ZDACW 27915\n [Z Motor]
17-03-18 02:50:39.954 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:50:39.964 -07 000000610 INF: FPGA: 'ZDACW 27915' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:50:39.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:39.964 -07 000000576 INF: FPGA: Recv ZDACR 27915
17-03-18 02:50:39.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:39.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:40.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.124 -07 000000502 INF: FPGA: Recv ZSGSRD 29182
17-03-18 02:50:40.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:40.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.134 -07 000000444 INF: FPGA: Recv ZSGSRD 29181
17-03-18 02:50:40.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.144 -07 000000606 INF: FPGA: Recv ZSGSRD 29184
17-03-18 02:50:40.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.154 -07 000000462 INF: FPGA: Recv ZSGSRD 29184
17-03-18 02:50:40.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.164 -07 000000430 INF: FPGA: Recv ZSGSRD 29179
17-03-18 02:50:40.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.174 -07 000000502 INF: FPGA: Recv ZSGSRD 29189
17-03-18 02:50:40.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.184 -07 000000455 INF: FPGA: Recv ZSGSRD 29179
17-03-18 02:50:40.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.194 -07 000000591 INF: FPGA: Recv ZSGSRD 29186
17-03-18 02:50:40.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.204 -07 000000569 INF: FPGA: Recv ZSGSRD 29191
17-03-18 02:50:40.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:40.214 -07 000000629 INF: FPGA: Recv ZSGSRD 29179
17-03-18 02:50:40.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:40.224 -07 000000618 INF: FPGA: Recv ZPIEZORD 24660
17-03-18 02:50:40.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:40.234 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.260 V. Piezo Error = -9.9 V.
17-03-18 02:50:40.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29183 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29183 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29179 (-127.0 uncal um), Max = 29191 (-127.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:50:40.234 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29183, posNoise = 8, negNoise = 4
17-03-18 02:50:40.234 -07 000000610 INF: Z Motor: After move to -0.127787, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:40.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:50:40.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:40.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:40.234 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:40.234 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:40.234 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:40.234 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:40.234 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:40.234 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:40.234 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:40.234 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:40.234 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:50:40.234 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:40.244 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:40.244 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:40.244 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:50:40.244 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:40.254 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:50:40.254 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:50:40.254 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:50:40.254 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:50:40.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 28092 150\n [Camera]
17-03-18 02:50:40.454 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:40.854 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:40.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:40.854 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:40.854 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:40.854 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) start.
17-03-18 02:50:40.854 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:40.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:40.854 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:40.854 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:40.854 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:50:40.984 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.001704,
17-03-18 02:50:41.124 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28092 783
17-03-18 02:50:41.194 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:50:41.244 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1163922192, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:50:41.244 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:50:41.244 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:41.244 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:50:41.244 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:50:41.244 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:41.244 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:41.244 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:50:41.244 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:41.254 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:50:41.384 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:41.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:41.384 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:41.384 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:41.384 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:41.384 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:41.384 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:41.384 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:50:41.394 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:41.394 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:50:41.514 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:41.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:41.574 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:50:41.574 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:41.574 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 28092 150' command took 2 ms to send, 1319 ms to get response, and 1326 ms overall
17-03-18 02:50:41.584 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:41.584 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127801134944145. ------
17-03-18 02:50:41.584 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:41.584 -07 000000430 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13409 mm
17-03-18 02:50:41.584 -07 000000430 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:41.584 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:41.594 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:50:41.594 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:41.594 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:50:41.594 -07 000000444 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:50:41.594 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29292, sync = True, waitForSettling = False)
17-03-18 02:50:41.594 -07 000000606 INF: Z Motor: Moving to -0.134090 mm, started at -0.127801 mm, distance = -6.29 um
17-03-18 02:50:41.604 -07 000000606 INF: FPGA: Xmit ZDACW 29292\n [Z Motor]
17-03-18 02:50:41.604 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:50:41.614 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:41.614 -07 000000606 INF: FPGA: 'ZDACW 29292' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:50:41.614 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:50:41.624 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:50:41.624 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:41.624 -07 000000444 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:41.624 -07 000000444 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:50:41.624 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:41.624 -07 000000590 INF: FPGA: Recv ZDACR 29292
17-03-18 02:50:41.634 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:50:41.634 -07 000000606 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:50:41.634 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:41.794 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:50:41.794 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:50:41.794 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:41.794 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 02:50:41.794 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:50:41.794 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:41.794 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:41.794 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:50:41.794 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:41.794 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 02:50:41.794 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:50:41.804 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-18 02:50:42.004 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:50:42.004 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:50:42.044 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:42.044 -07 000000591 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:50:42.054 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:42.054 -07 000000444 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:42.054 -07 000000444 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:50:42.054 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.181 mm/sec
17-03-18 02:50:43.004 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:43.004 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:50:43.014 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:43.014 -07 000000444 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:43.034 -07 000000444 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:43.034 -07 000000444 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:50:43.034 -07 000000444 INF: Y Motor: Moved to 74.0083 after 1440 ms (table move)
17-03-18 02:50:43.034 -07 000000430 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134090 mm (DAC = 29292)
17-03-18 02:50:43.034 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.034 -07 000000512 INF: FPGA: Recv ZSGSRD 30165
17-03-18 02:50:43.044 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:50:43.044 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.044 -07 000000502 INF: FPGA: Recv ZSGSRD 30161
17-03-18 02:50:43.054 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.054 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.054 -07 000000626 INF: FPGA: Recv ZSGSRD 30159
17-03-18 02:50:43.064 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.064 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.064 -07 000000569 INF: FPGA: Recv ZSGSRD 30158
17-03-18 02:50:43.074 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.074 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.074 -07 000000444 INF: FPGA: Recv ZSGSRD 30164
17-03-18 02:50:43.084 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.084 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.084 -07 000000579 INF: FPGA: Recv ZSGSRD 30166
17-03-18 02:50:43.094 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.094 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.094 -07 000000590 INF: FPGA: Recv ZSGSRD 30169
17-03-18 02:50:43.104 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.104 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.104 -07 000000561 INF: FPGA: Recv ZSGSRD 30158
17-03-18 02:50:43.114 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.114 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.114 -07 000000512 INF: FPGA: Recv ZSGSRD 30161
17-03-18 02:50:43.124 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.124 -07 000000430 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:43.124 -07 000000618 INF: FPGA: Recv ZSGSRD 30162
17-03-18 02:50:43.134 -07 000000430 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.134 -07 000000430 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:43.134 -07 000000590 INF: FPGA: Recv ZPIEZORD 25962
17-03-18 02:50:43.144 -07 000000430 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.144 -07 000000430 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.470 V. Piezo Error = -9.2 V.
17-03-18 02:50:43.144 -07 000000430 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30162 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30162 (-133.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30158 (-133.3 uncal um), Max = 30169 (-133.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:50:43.144 -07 000000430 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30162, posNoise = 7, negNoise = 4
17-03-18 02:50:43.144 -07 000000430 INF: Z Motor: After move to -0.134090, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:43.144 -07 000000430 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-18 02:50:43.144 -07 000000430 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:43.194 -07 000000430 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 02:50:43.194 -07 000000430 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:43.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:43.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:43.194 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:43.194 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:43.194 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:43.194 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:43.194 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:50:43.194 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:43.194 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:43.194 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:43.214 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:50:43.214 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:50:43.214 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:43.264 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:43.564 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:43.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:43.564 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:43.564 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:50:43.604 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:50:43.604 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:43.604 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:50:43.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:50:43.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:43.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:50:43.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:50:43.704 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:43.704 -07 000000430 INF: Autofocus start
17-03-18 02:50:43.704 -07 000000430 INF: MeasureProfile start
17-03-18 02:50:43.704 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:43.714 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:43.714 -07 000000444 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:43.714 -07 000000430 INF: MeasureProfile done
17-03-18 02:50:43.714 -07 000000430 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:50:43.714 -07 000000430 INF: Autofocus finished
17-03-18 02:50:43.914 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:43.914 -07 000000444 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-18 02:50:43.924 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134090438630929. ----------
17-03-18 02:50:43.924 -07 000000610 INF: Cycle	104	Tile	18	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:43.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27816, sync = True, waitForSettling = True)
17-03-18 02:50:43.924 -07 000000610 INF: Z Motor: Moving to -0.127333 mm, started at -0.134090 mm, distance = 6.76 um
17-03-18 02:50:43.924 -07 000000610 INF: FPGA: Xmit ZDACW 27816\n [Z Motor]
17-03-18 02:50:43.924 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:50:43.934 -07 000000610 INF: FPGA: 'ZDACW 27816' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:43.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:43.934 -07 000000591 INF: FPGA: Recv ZDACR 27816
17-03-18 02:50:43.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:43.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:44.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.094 -07 000000461 INF: FPGA: Recv ZSGSRD 29111
17-03-18 02:50:44.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.104 -07 000000576 INF: FPGA: Recv ZSGSRD 29115
17-03-18 02:50:44.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.114 -07 000000501 INF: FPGA: Recv ZSGSRD 29114
17-03-18 02:50:44.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.124 -07 000000430 INF: FPGA: Recv ZSGSRD 29106
17-03-18 02:50:44.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.134 -07 000000576 INF: FPGA: Recv ZSGSRD 29118
17-03-18 02:50:44.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.144 -07 000000501 INF: FPGA: Recv ZSGSRD 29111
17-03-18 02:50:44.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.154 -07 000000430 INF: FPGA: Recv ZSGSRD 29109
17-03-18 02:50:44.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.164 -07 000000444 INF: FPGA: Recv ZSGSRD 29114
17-03-18 02:50:44.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.174 -07 000000569 INF: FPGA: Recv ZSGSRD 29109
17-03-18 02:50:44.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:44.184 -07 000000502 INF: FPGA: Recv ZSGSRD 29117
17-03-18 02:50:44.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:44.194 -07 000000462 INF: FPGA: Recv ZPIEZORD 24562
17-03-18 02:50:44.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:44.204 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -10.0 V.
17-03-18 02:50:44.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29112 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29112 (-126.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29106 (-126.5 uncal um), Max = 29118 (-126.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:50:44.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29112, posNoise = 6, negNoise = 6
17-03-18 02:50:44.204 -07 000000610 INF: Z Motor: After move to -0.127333, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:44.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:50:44.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:44.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:44.204 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:44.204 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:44.204 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:44.204 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:44.204 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:44.204 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:44.204 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:50:44.204 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:44.204 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:50:44.204 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:44.214 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:50:44.214 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:44.214 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:50:44.214 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:44.224 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:50:44.224 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:50:44.224 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:50:44.224 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:50:44.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 27992 150\n [Camera]
17-03-18 02:50:44.424 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:44.824 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:44.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:44.824 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:44.824 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:44.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:50:44.824 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:44.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:44.824 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:44.824 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:44.824 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:50:45.014 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27992 783
17-03-18 02:50:45.164 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:45.204 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:50:45.204 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:50:45.204 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:45.204 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:45.204 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:50:45.204 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:50:45.204 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:50:45.204 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:45.214 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:50:45.224 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:50:45.354 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:45.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:45.354 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:45.354 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:45.354 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:50:45.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:45.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:45.354 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:45.354 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:45.364 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:50:45.544 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:50:45.544 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:45.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 27992 150' command took 2 ms to send, 1318 ms to get response, and 1324 ms overall
17-03-18 02:50:45.554 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:50:45.554 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.12734501588208. ------
17-03-18 02:50:45.554 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:45.554 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13329 mm
17-03-18 02:50:45.554 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:50:45.554 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29116, sync = True, waitForSettling = False)
17-03-18 02:50:45.554 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:50:45.554 -07 000000461 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:50:45.554 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:45.554 -07 000000462 INF: Z Motor: Moving to -0.133285 mm, started at -0.127345 mm, distance = -5.94 um
17-03-18 02:50:45.564 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:45.564 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:50:45.574 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:45.574 -07 000000629 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:50:45.584 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:50:45.584 -07 000000461 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:45.584 -07 000000462 INF: FPGA: Xmit ZDACW 29116\n [Z Motor]
17-03-18 02:50:45.584 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:50:45.584 -07 000000461 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:50:45.584 -07 000000461 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:50:45.594 -07 000000462 INF: FPGA: 'ZDACW 29116' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-18 02:50:45.594 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:45.594 -07 000000424 INF: FPGA: Recv ZDACR 29116
17-03-18 02:50:45.604 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:45.604 -07 000000462 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-18 02:50:45.604 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:50:45.754 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:50:45.754 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:50:45.754 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:45.754 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:50:45.754 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:50:45.754 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:45.754 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:45.754 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:50:45.754 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:50:45.764 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:50:45.764 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:50:45.764 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:50:45.974 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:50:45.974 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-18 02:50:46.024 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:46.024 -07 000000618 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:50:46.034 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:50:46.034 -07 000000461 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:46.034 -07 000000461 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:50:46.034 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.154 mm/sec
17-03-18 02:50:46.454 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.018051,
17-03-18 02:50:46.514 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:46.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 103. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:46.984 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:46.984 -07 000000512 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:50:46.994 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:46.994 -07 000000461 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:47.004 -07 000000461 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:47.004 -07 000000461 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:50:47.004 -07 000000461 INF: Y Motor: Moved to 74.8320 after 1452 ms (table move)
17-03-18 02:50:47.014 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133285 mm (DAC = 29116)
17-03-18 02:50:47.014 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.014 -07 000000512 INF: FPGA: Recv ZSGSRD 30046
17-03-18 02:50:47.024 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:50:47.024 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.024 -07 000000467 INF: FPGA: Recv ZSGSRD 30035
17-03-18 02:50:47.034 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.034 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.034 -07 000000455 INF: FPGA: Recv ZSGSRD 30036
17-03-18 02:50:47.044 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.044 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.044 -07 000000430 INF: FPGA: Recv ZSGSRD 30043
17-03-18 02:50:47.054 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.054 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.054 -07 000000461 INF: FPGA: Recv ZSGSRD 30042
17-03-18 02:50:47.064 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.064 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.064 -07 000000501 INF: FPGA: Recv ZSGSRD 30042
17-03-18 02:50:47.074 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:50:47.074 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.074 -07 000000576 INF: FPGA: Recv ZSGSRD 30040
17-03-18 02:50:47.084 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.084 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.084 -07 000000561 INF: FPGA: Recv ZSGSRD 30029
17-03-18 02:50:47.094 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.094 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.094 -07 000000618 INF: FPGA: Recv ZSGSRD 30041
17-03-18 02:50:47.104 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.104 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:47.104 -07 000000590 INF: FPGA: Recv ZSGSRD 30040
17-03-18 02:50:47.114 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.114 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:47.114 -07 000000461 INF: FPGA: Recv ZPIEZORD 25840
17-03-18 02:50:47.124 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.124 -07 000000569 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.2 V.
17-03-18 02:50:47.124 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30039 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30040 (-132.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30029 (-132.4 uncal um), Max = 30046 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:50:47.124 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30039, posNoise = 7, negNoise = 10
17-03-18 02:50:47.124 -07 000000569 INF: Z Motor: After move to -0.133285, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:47.124 -07 000000569 INF: Z Motor: Settle wait time = 1454 ms, measure time = 109 ms (allowed 150 ms), total time = 1563 ms
17-03-18 02:50:47.124 -07 000000569 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:50:47.174 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:50:47.174 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:50:47.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:47.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:47.174 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:47.174 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:50:47.174 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:47.174 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:47.174 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:50:47.184 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:50:47.184 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:47.184 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:50:47.184 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:50:47.184 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:50:47.194 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:50:47.234 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:50:47.534 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:50:47.534 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:50:47.534 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:50:47.534 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1101361424, 0x0, 559484976) start.
17-03-18 02:50:47.574 -07 000000629 INF: FPGA: Recv @CAMSNAP 383
17-03-18 02:50:47.584 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:50:47.584 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 388 ms overall
17-03-18 02:50:47.654 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1101361424, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 02:50:47.654 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:47.654 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:50:47.654 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 02:50:47.684 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:50:47.684 -07 000000590 INF: Autofocus start
17-03-18 02:50:47.684 -07 000000590 INF: MeasureProfile start
17-03-18 02:50:47.694 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:50:47.694 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:50:47.694 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:50:47.704 -07 000000590 INF: MeasureProfile done
17-03-18 02:50:47.704 -07 000000590 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:50:47.704 -07 000000590 INF: Autofocus finished
17-03-18 02:50:47.894 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:50:47.894 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-18 02:50:47.894 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133300260537492. ----------
17-03-18 02:50:47.894 -07 000000610 INF: Cycle	104	Tile	19	Exposure Settings		A	398	G	191	T	191	C	398
17-03-18 02:50:47.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27640, sync = True, waitForSettling = True)
17-03-18 02:50:47.904 -07 000000610 INF: Z Motor: Moving to -0.126528 mm, started at -0.133300 mm, distance = 6.77 um
17-03-18 02:50:47.904 -07 000000610 INF: FPGA: Xmit ZDACW 27640\n [Z Motor]
17-03-18 02:50:47.904 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:50:47.914 -07 000000610 INF: FPGA: 'ZDACW 27640' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:50:47.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:50:47.914 -07 000000561 INF: FPGA: Recv ZDACR 27640
17-03-18 02:50:47.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:47.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:50:48.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.074 -07 000000576 INF: FPGA: Recv ZSGSRD 28986
17-03-18 02:50:48.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:48.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.084 -07 000000626 INF: FPGA: Recv ZSGSRD 28988
17-03-18 02:50:48.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.094 -07 000000502 INF: FPGA: Recv ZSGSRD 28983
17-03-18 02:50:48.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.104 -07 000000455 INF: FPGA: Recv ZSGSRD 28989
17-03-18 02:50:48.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.114 -07 000000512 INF: FPGA: Recv ZSGSRD 28984
17-03-18 02:50:48.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.124 -07 000000576 INF: FPGA: Recv ZSGSRD 28988
17-03-18 02:50:48.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.134 -07 000000430 INF: FPGA: Recv ZSGSRD 28989
17-03-18 02:50:48.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.144 -07 000000502 INF: FPGA: Recv ZSGSRD 28984
17-03-18 02:50:48.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.154 -07 000000579 INF: FPGA: Recv ZSGSRD 28988
17-03-18 02:50:48.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:50:48.164 -07 000000561 INF: FPGA: Recv ZSGSRD 28984
17-03-18 02:50:48.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:50:48.174 -07 000000618 INF: FPGA: Recv ZPIEZORD 24453
17-03-18 02:50:48.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:48.184 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -9.9 V.
17-03-18 02:50:48.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28986 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28987 (-125.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 28983 (-125.7 uncal um), Max = 28989 (-125.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:50:48.184 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28986, posNoise = 3, negNoise = 3
17-03-18 02:50:48.184 -07 000000610 INF: Z Motor: After move to -0.126528, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:50:48.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:50:48.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:50:48.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:50:48.184 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:50:48.184 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:50:48.184 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:50:48.184 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:50:48.184 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:50:48.184 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:50:48.184 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:50:48.184 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:50:48.184 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:50:48.184 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:50:48.194 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:50:48.194 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:50:48.194 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:50:48.194 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:50:48.204 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:50:48.204 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:50:48.204 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:50:48.204 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:50:48.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 398 398 191 191 27817 150\n [Camera]
17-03-18 02:50:48.404 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:50:48.804 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 590
17-03-18 02:50:48.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 590
17-03-18 02:50:48.804 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:48.804 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:48.804 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:50:48.804 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 590
17-03-18 02:50:48.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 590
17-03-18 02:50:48.804 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:48.804 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:48.804 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:50:48.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27817 783
17-03-18 02:50:49.144 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 933
17-03-18 02:50:49.184 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:50:49.184 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:50:49.184 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:49.184 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:49.194 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:50:49.194 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:50:49.194 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:49.194 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:49.194 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:50:49.194 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:50:49.334 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1124
17-03-18 02:50:49.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1124
17-03-18 02:50:49.344 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:50:49.344 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:50:49.344 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:50:49.344 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1124
17-03-18 02:50:49.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1124
17-03-18 02:50:49.344 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:50:49.344 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:50:49.344 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:50:49.534 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1316
17-03-18 02:50:49.534 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:50:49.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 398 398 191 191 27817 150' command took 2 ms to send, 1321 ms to get response, and 1324 ms overall
17-03-18 02:50:49.744 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 405 ms.
17-03-18 02:50:49.744 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 02:50:49.744 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:49.744 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 02:50:49.744 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:50:49.744 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:50:49.754 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:50:49.754 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:50:49.754 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 02:50:49.754 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:50:49.754 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:50:49.794 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:50:49.794 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:50:49.834 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:50:49.854 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 02:50:49.854 -07 000000610 INF: Imaging Cycle 104: ScanTilesCommand Cycle 104 time end. Duration was 161402 ms.
17-03-18 02:50:49.854 -07 000000610 INF: =================== Cycle #104 ===================
17-03-18 02:50:49.854 -07 000000610 INF: ===================  ===================
17-03-18 02:50:49.854 -07 000000561 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:50:49.854 -07 000000579 INF: FPGA: Recv EXLED1ADCR 26
17-03-18 02:50:49.864 -07 000000561 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:50:49.864 -07 000000561 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-18 02:50:49.864 -07 000000561 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 104, FrontChillerTemperature: 4.018051, FrontChillerHeatSinkTemperature: 0.422846, AmbientTemperature: 18.65879, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.3752, GreenLEDSensorTemperature: 27.24326, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-18 02:50:49.944 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.