17-03-18 02:50:49.994 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:50:49.994 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:50:49.994 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 02:50:49.994 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:50.004 -07 000000618 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:50:50.004 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:50:50.004 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:50.004 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:50:50.004 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:50:50.004 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:50:50.114 -07 000000591 INF: FPGA: Recv YMVTO 154379 878
17-03-18 02:50:50.114 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 117 ms overall
17-03-18 02:50:50.124 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-18 02:50:50.124 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 02:50:50.124 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-18 02:50:51.514 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:50:51.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1539, R2=1603, Total=3142. Warn if over 250 bubbles per interval.
17-03-18 02:50:51.814 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.000345,
17-03-18 02:50:53.124 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:50:53.124 -07 000000444 INF: FPGA: Recv YRDPOS 154387
17-03-18 02:50:53.134 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:50:53.134 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:50:53.154 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:50:53.154 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-18 02:50:53.154 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3160 ms
17-03-18 02:50:53.164 -07 000000610 INF: =================== Cycle #105, Flow Cell Temp 60° ===================
17-03-18 02:50:53.164 -07 000000610 INF: =================== Cycle #105, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:50:53.164 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 02:50:53.164 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:50:53.174 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:50:53.174 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:50:53.174 -07 000000430 INF: FPGA: Recv TEC2EN 
17-03-18 02:50:53.184 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:50:53.184 -07 000000610 INF: =================== Cycle #105, Flow Cell Temp 60° ===================
17-03-18 02:50:53.184 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:50:53.184 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:50:53.184 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:50:53.214 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:50:53.214 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:50:53.214 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:50:53.514 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:50:53.534 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:50:53.534 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:50:53.584 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:50:53.604 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:50:53.604 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:50:53.704 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:50:53.704 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:50:53.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:50:53.734 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:50:53.734 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:50:53.734 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:50:53.864 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:50:53.904 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:50:56.514 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 9 R1 12
17-03-18 02:50:56.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=12, R2=9, Total=21. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1551, R2=1612, Total=3163. Warn if over 250 bubbles per interval.
17-03-18 02:50:57.034 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:50:57.064 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:50:57.174 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.978563,
17-03-18 02:50:57.484 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:50:57.514 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:50:57.934 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:50:57.964 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:50:57.964 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:50:57.964 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:50:58.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:50:58.124 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:50:58.124 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:50:58.254 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:50:58.284 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:50:58.284 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:50:58.284 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:50:58.414 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:50:58.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:50:58.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:50:58.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:50:58.904 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:50:58.904 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:51:00.124 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:51:00.124 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:51:00.124 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:51:00.144 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:51:00.144 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:51:00.144 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:51:00.284 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:51:00.304 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:51:00.304 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:51:00.354 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:51:00.374 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:51:00.374 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:51:00.474 -07 000000610 INF: =================== Cycle #105, Pumping Reagent CMS (4) ===================
17-03-18 02:51:00.474 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:51:00.474 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:00.504 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:51:00.504 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:51:00.504 -07 000000610 INF: =================== Cycle #105, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:51:00.634 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:51:00.674 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:01.514 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 5
17-03-18 02:51:01.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=5, R2=7, Total=12. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1556, R2=1619, Total=3175. Warn if over 250 bubbles per interval.
17-03-18 02:51:02.114 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:02.144 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:02.534 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.003063,
17-03-18 02:51:02.564 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:02.594 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:02.594 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:51:02.594 -07 000000610 INF: =================== Cycle #105, Pumping Reagent CMS (4) ===================
17-03-18 02:51:02.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:02.754 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:51:02.754 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:51:02.884 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:02.914 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:51:02.914 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:51:02.914 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:51:03.044 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:51:03.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:03.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:03.534 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:03.534 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:51:03.534 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:51:04.754 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:51:04.754 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:51:04.754 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:51:04.774 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:51:04.774 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:51:04.774 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:51:04.924 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:51:04.944 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:51:04.944 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:51:04.994 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:51:05.014 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:51:05.014 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:51:05.114 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:51:05.114 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:51:05.114 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:05.144 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:51:05.144 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:51:05.144 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:51:05.274 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:51:05.314 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:06.184 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:06.214 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:06.214 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:51:06.214 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:51:06.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:06.374 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:51:06.374 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:51:06.504 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:06.514 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:51:06.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1556, R2=1620, Total=3176. Warn if over 250 bubbles per interval.
17-03-18 02:51:06.534 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:51:06.534 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:51:06.534 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:51:06.664 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:51:06.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:07.124 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:07.154 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:07.154 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:51:07.154 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:51:07.154 -07 000000501 INF: WaitCommand(10000) start
17-03-18 02:51:07.154 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:51:07.154 -07 000000455 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:51:07.894 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.974486,
17-03-18 02:51:08.374 -07 000000455 INF: AsyncDelayTimer waited 1214ms
17-03-18 02:51:08.374 -07 000000455 INF: LanePump: Xmit /1?\r
17-03-18 02:51:08.404 -07 000000455 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:51:08.404 -07 000000455 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:51:08.534 -07 000000455 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:51:08.574 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:10.104 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:10.134 -07 000000455 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:10.554 -07 000000455 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:10.584 -07 000000455 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:10.584 -07 000000455 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:51:10.584 -07 000000455 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:51:10.584 -07 000000455 INF: ===================  ===================
17-03-18 02:51:11.514 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:51:11.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1556, R2=1620, Total=3176. Warn if over 250 bubbles per interval.
17-03-18 02:51:13.254 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.959467,
17-03-18 02:51:16.514 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:51:16.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1556, R2=1620, Total=3176. Warn if over 250 bubbles per interval.
17-03-18 02:51:17.164 -07 000000501 INF: WaitCommand(10000) end
17-03-18 02:51:17.164 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:51:17.164 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:51:17.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:17.194 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:51:17.194 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:51:17.194 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:51:17.324 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:51:17.364 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:18.614 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.99219,
17-03-18 02:51:21.514 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:51:21.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1556, R2=1620, Total=3176. Warn if over 250 bubbles per interval.
17-03-18 02:51:23.494 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:23.524 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:23.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:23.974 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:23.974 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.993549,
17-03-18 02:51:24.394 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:24.424 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:24.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:24.874 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:25.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:25.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:25.324 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:51:25.324 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:51:25.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:25.484 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:51:25.484 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:51:25.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:25.644 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:51:25.644 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:51:25.644 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:51:25.774 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:51:25.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:26.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:26.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:26.264 -07 000000610 INF: LanePump: Waited 461 ms for pump motion to complete
17-03-18 02:51:26.264 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:51:26.514 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:51:26.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1556, R2=1620, Total=3176. Warn if over 250 bubbles per interval.
17-03-18 02:51:27.484 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-18 02:51:27.484 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:51:27.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:51:27.504 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:51:27.504 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:51:27.504 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:51:27.714 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:51:27.734 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:51:27.734 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:51:27.784 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:51:27.804 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:51:27.804 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:51:27.904 -07 000000610 INF: =================== Cycle #105, Pumping Reagent IMT (1) ===================
17-03-18 02:51:27.904 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:51:27.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:27.944 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:51:27.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:51:27.944 -07 000000610 INF: =================== Cycle #105, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:51:28.074 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:51:28.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:29.334 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.009895,
17-03-18 02:51:29.554 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:29.584 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:30.004 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:30.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:30.034 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:51:30.034 -07 000000610 INF: =================== Cycle #105, Pumping Reagent IMT (1) ===================
17-03-18 02:51:30.164 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:30.194 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:51:30.194 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:51:30.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:30.354 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:51:30.354 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:51:30.354 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:51:30.484 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:51:30.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:30.944 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:30.974 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:30.974 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:51:30.974 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:51:31.514 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 02:51:31.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1620, Total=3177. Warn if over 250 bubbles per interval.
17-03-18 02:51:32.194 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:51:32.194 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:51:32.194 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:51:32.214 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:51:32.214 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:51:32.214 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:51:32.444 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:51:32.464 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:51:32.464 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:51:32.514 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:51:32.534 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:51:32.534 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:51:32.634 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:51:32.634 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:51:32.634 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:32.664 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:51:32.664 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:51:32.664 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:51:32.794 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:51:32.834 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:51:33.704 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:33.734 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:33.734 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 02:51:33.734 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:51:33.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:33.894 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:51:33.894 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:51:34.024 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:51:34.054 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:51:34.054 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:51:34.054 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:51:34.184 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:51:34.214 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:34.644 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:51:34.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:51:34.674 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:51:34.674 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:51:34.674 -07 000000610 INF: =================== Cycle #105, Flow Cell Temp 65° ===================
17-03-18 02:51:34.674 -07 000000610 INF: =================== Cycle #105, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:51:34.674 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:51:34.674 -07 000000591 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:51:34.684 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:51:34.694 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:51:34.694 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.004458,
17-03-18 02:51:34.694 -07 000000629 INF: FPGA: Recv TEC2EN 
17-03-18 02:51:34.704 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:51:34.704 -07 000000610 INF: =================== Cycle #105, Flow Cell Temp 65° ===================
17-03-18 02:51:34.704 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:51:34.704 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:51:36.514 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:51:36.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:51:40.064 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.000345,
17-03-18 02:51:41.514 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:51:41.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:51:45.424 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.007176,
17-03-18 02:51:46.514 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:51:46.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:51:50.784 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.999021,
17-03-18 02:51:51.514 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:51:51.514 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:51:56.144 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.983999,
17-03-18 02:51:56.514 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:51:56.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:52:01.504 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.978563,
17-03-18 02:52:01.514 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:01.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:52:04.714 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:52:04.714 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:52:04.714 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:52:04.804 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:04.834 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:52:04.834 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:52:04.834 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:52:04.964 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:52:05.004 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:05.544 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:05.574 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:05.574 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 02:52:05.574 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:52:05.704 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:05.734 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:52:05.734 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:52:05.864 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:05.894 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:52:05.894 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:52:05.894 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:52:06.024 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:52:06.054 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:06.484 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:06.514 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:06.514 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:52:06.514 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:52:06.514 -07 000000590 INF: WaitCommand(30000) start
17-03-18 02:52:06.514 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:52:06.514 -07 000000444 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:52:06.514 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:06.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:52:06.864 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.986717,
17-03-18 02:52:07.734 -07 000000444 INF: AsyncDelayTimer waited 1214ms
17-03-18 02:52:07.734 -07 000000444 INF: LanePump: Xmit /1?\r
17-03-18 02:52:07.764 -07 000000444 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:52:07.764 -07 000000444 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:52:07.894 -07 000000444 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:52:07.934 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:10.274 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:10.304 -07 000000444 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:10.724 -07 000000444 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:10.754 -07 000000444 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:10.754 -07 000000444 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 02:52:10.754 -07 000000444 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:52:10.754 -07 000000444 INF: ===================  ===================
17-03-18 02:52:11.524 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:11.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:52:12.224 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.989471,
17-03-18 02:52:16.524 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:16.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:52:17.584 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.99219,
17-03-18 02:52:21.524 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:21.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:52:22.944 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.989471,
17-03-18 02:52:26.524 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:26.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:52:28.304 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.98264,
17-03-18 02:52:31.524 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:31.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:52:33.664 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.001704,
17-03-18 02:52:36.524 -07 000000590 INF: WaitCommand(30000) end
17-03-18 02:52:36.524 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:36.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1557, R2=1621, Total=3178. Warn if over 250 bubbles per interval.
17-03-18 02:52:36.524 -07 000000610 INF: =================== Cycle #105, Flow Cell Temp 22° ===================
17-03-18 02:52:36.524 -07 000000610 INF: =================== Cycle #105, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:52:36.524 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 02:52:36.524 -07 000000461 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:52:36.534 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 2 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:52:36.534 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:52:36.534 -07 000000444 INF: FPGA: Recv TEC2EN 
17-03-18 02:52:36.544 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:52:36.544 -07 000000610 INF: =================== Cycle #105, Flow Cell Temp 22° ===================
17-03-18 02:52:36.544 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:52:36.544 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:52:36.544 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:52:36.544 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:36.574 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:52:36.574 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:52:36.574 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:52:36.704 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:52:36.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:39.024 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.983999,
17-03-18 02:52:39.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:39.904 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:40.324 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:40.354 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:40.774 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:40.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:40.804 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:52:40.804 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:52:40.934 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:40.964 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:52:40.964 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:52:41.094 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:41.124 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:52:41.124 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:52:41.124 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:52:41.254 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:52:41.284 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:41.524 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-18 02:52:41.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:52:41.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:41.744 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:41.744 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:52:41.744 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:52:42.964 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:52:42.964 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:52:42.964 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:52:42.984 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:52:42.984 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:52:42.984 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:52:43.134 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:52:43.154 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:52:43.154 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:52:43.204 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:52:43.224 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:52:43.224 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:52:43.324 -07 000000610 INF: =================== Cycle #105, Pumping Reagent USM (2) ===================
17-03-18 02:52:43.324 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:52:43.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:43.354 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:52:43.354 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:52:43.354 -07 000000610 INF: =================== Cycle #105, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:52:43.484 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:52:43.524 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:44.384 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.99219,
17-03-18 02:52:44.964 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:44.994 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:45.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:45.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:45.444 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:52:45.444 -07 000000610 INF: =================== Cycle #105, Pumping Reagent USM (2) ===================
17-03-18 02:52:45.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:45.604 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:52:45.604 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:52:45.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:45.764 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:52:45.764 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:52:45.764 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:52:45.894 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:52:45.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:46.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:46.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:46.384 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:52:46.384 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:52:46.524 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:46.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:52:47.604 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:52:47.604 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:52:47.604 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:52:47.624 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:52:47.624 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:52:47.624 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:52:47.774 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:52:47.794 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:52:47.794 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:52:47.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:52:47.864 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:52:47.864 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:52:47.964 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:52:47.964 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:52:47.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:47.994 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:52:47.994 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:52:47.994 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:52:48.124 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:52:48.164 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:49.034 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:49.064 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:49.064 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:52:49.064 -07 000000610 INF: =================== Cycle #105, Pumping Reagent PR2 (3) ===================
17-03-18 02:52:49.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:49.224 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:52:49.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:52:49.354 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:52:49.384 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:52:49.384 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:52:49.384 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:52:49.514 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:52:49.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:49.744 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.004458,
17-03-18 02:52:49.974 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:50.004 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:50.004 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:52:50.004 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:52:50.004 -07 000000606 INF: WaitCommand(10000) start
17-03-18 02:52:50.004 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:52:50.004 -07 000000512 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:52:51.224 -07 000000512 INF: AsyncDelayTimer waited 1214ms
17-03-18 02:52:51.224 -07 000000512 INF: LanePump: Xmit /1?\r
17-03-18 02:52:51.254 -07 000000512 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:52:51.254 -07 000000512 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:52:51.384 -07 000000512 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:52:51.424 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:51.524 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:51.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:52:52.954 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:52.984 -07 000000512 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:52:53.404 -07 000000512 INF: LanePump: Xmit /1Q\r
17-03-18 02:52:53.434 -07 000000512 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:52:53.434 -07 000000512 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:52:53.434 -07 000000512 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:52:53.434 -07 000000512 INF: ===================  ===================
17-03-18 02:52:55.104 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.023489,
17-03-18 02:52:56.524 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:52:56.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:00.014 -07 000000606 INF: WaitCommand(10000) end
17-03-18 02:53:00.014 -07 000000610 INF: =================== Cycle #105, Imaging ===================
17-03-18 02:53:00.014 -07 000000610 INF: Imaging Cycle 105: ScanTilesCommand Cycle 105 time start.
17-03-18 02:53:00.014 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:53:00.014 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:53:00.044 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:53:00.044 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:53:00.044 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:53:00.344 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:53:00.364 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:53:00.364 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:53:00.414 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:53:00.434 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:53:00.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:00.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:00.434 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:53:00.434 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:00.434 -07 000000606 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:53:00.434 -07 000000591 INF: FPGA: Recv EXLED1ON 
17-03-18 02:53:00.444 -07 000000606 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:00.444 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:53:00.444 -07 000000629 INF: FPGA: Recv EXLED1ADCR 23123
17-03-18 02:53:00.454 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:00.454 -07 000000606 INF: RedLED: Using Red data: Photodiode ADC 23123 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.5 mW
17-03-18 02:53:00.464 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.999021,
17-03-18 02:53:00.474 -07 000000606 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:53:00.474 -07 000000618 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:53:00.484 -07 000000606 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:53:00.484 -07 000000606 INF: RedLED: LED was on for 39 ms
17-03-18 02:53:00.484 -07 000000606 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 45 ms.
17-03-18 02:53:00.484 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:53:00.484 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:00.504 -07 000000606 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:53:00.504 -07 000000502 INF: FPGA: Recv EXLED2ON 
17-03-18 02:53:00.514 -07 000000606 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:53:00.514 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:53:00.514 -07 000000444 INF: FPGA: Recv EXLED1ADCR 2099
17-03-18 02:53:00.524 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:00.524 -07 000000606 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-18 02:53:00.534 -07 000000606 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:53:00.534 -07 000000424 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:53:00.544 -07 000000606 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:00.544 -07 000000606 INF: GreenLED: LED was on for 30 ms
17-03-18 02:53:00.544 -07 000000606 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 58 ms.
17-03-18 02:53:00.544 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:53:00.544 -07 000000569 INF: FPGA: Recv EMCUR 
17-03-18 02:53:00.554 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:00.554 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:53:01.054 -07 000000590 INF: FPGA: Recv EMOUT
17-03-18 02:53:01.054 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:53:01.054 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:53:01.054 -07 000000455 INF: FPGA: Recv EMCUR 
17-03-18 02:53:01.064 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:01.064 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:53:01.064 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126535565152218. ------
17-03-18 02:53:01.064 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17855 mm
17-03-18 02:53:01.064 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:01.064 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:01.064 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:53:01.074 -07 000000590 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 02:53:01.074 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:01.074 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:01.074 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:53:01.074 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 39004, sync = True, waitForSettling = False)
17-03-18 02:53:01.074 -07 000000579 INF: Z Motor: Moving to -0.178549 mm, started at -0.126536 mm, distance = -52.01 um
17-03-18 02:53:01.074 -07 000000501 INF: FPGA: Recv YRDPOS 154387
17-03-18 02:53:01.084 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:53:01.084 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:01.084 -07 000000590 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:01.084 -07 000000590 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:53:01.084 -07 000000590 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:53:01.094 -07 000000579 INF: FPGA: Xmit ZDACW 39004\n [Z Motor]
17-03-18 02:53:01.094 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:53:01.104 -07 000000579 INF: FPGA: 'ZDACW 39004' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:53:01.104 -07 000000590 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:53:01.114 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:01.114 -07 000000561 INF: FPGA: Recv ZDACR 39004
17-03-18 02:53:01.124 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:01.124 -07 000000579 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:53:01.284 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:53:01.284 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-18 02:53:01.524 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:01.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:02.784 -07 000000501 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 02:53:02.784 -07 000000590 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-18 02:53:02.784 -07 000000590 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:53:02.784 -07 000000590 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 02:53:02.784 -07 000000590 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.472 mm, average velocity = 9.069 mm/sec
17-03-18 02:53:05.634 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:05.634 -07 000000467 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:53:05.644 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:05.644 -07 000000590 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:05.664 -07 000000590 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:05.664 -07 000000590 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 02:53:05.664 -07 000000590 INF: Y Motor: Moved to 59.9102 after 4599 ms
17-03-18 02:53:05.674 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178549 mm (DAC = 39004)
17-03-18 02:53:05.674 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.674 -07 000000606 INF: FPGA: Recv ZSGSRD 37089
17-03-18 02:53:05.684 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:53:05.684 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.684 -07 000000467 INF: FPGA: Recv ZSGSRD 37083
17-03-18 02:53:05.694 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.694 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.694 -07 000000561 INF: FPGA: Recv ZSGSRD 37082
17-03-18 02:53:05.704 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.704 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.704 -07 000000579 INF: FPGA: Recv ZSGSRD 37084
17-03-18 02:53:05.714 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.714 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.714 -07 000000590 INF: FPGA: Recv ZSGSRD 37081
17-03-18 02:53:05.724 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.724 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.724 -07 000000629 INF: FPGA: Recv ZSGSRD 37082
17-03-18 02:53:05.734 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.734 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.734 -07 000000606 INF: FPGA: Recv ZSGSRD 37084
17-03-18 02:53:05.744 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.744 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.744 -07 000000590 INF: FPGA: Recv ZSGSRD 37087
17-03-18 02:53:05.754 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.754 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.754 -07 000000626 INF: FPGA: Recv ZSGSRD 37085
17-03-18 02:53:05.764 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.764 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:05.764 -07 000000502 INF: FPGA: Recv ZSGSRD 37082
17-03-18 02:53:05.774 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.774 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:05.774 -07 000000569 INF: FPGA: Recv ZPIEZORD 33312
17-03-18 02:53:05.784 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:05.784 -07 000000512 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.952 V. Piezo Error = -8.4 V.
17-03-18 02:53:05.784 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37084 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37084 (-177.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37081 (-177.6 uncal um), Max = 37089 (-177.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:53:05.784 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37084, posNoise = 5, negNoise = 3
17-03-18 02:53:05.784 -07 000000512 INF: Z Motor: After move to -0.178549, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:05.784 -07 000000512 INF: Z Motor: Settle wait time = 4601 ms, measure time = 108 ms (allowed 150 ms), total time = 4709 ms
17-03-18 02:53:05.784 -07 000000512 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:05.834 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-18 02:53:05.834 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:05.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:05.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:05.834 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:05.834 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:05.834 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:53:05.834 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:05.834 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:05.834 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:53:05.854 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.996267,
17-03-18 02:53:05.864 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 26 ms.
17-03-18 02:53:05.864 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:53:05.864 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:05.864 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:53:05.874 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:53:05.874 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-18 02:53:05.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:53:05.924 -07 000000430 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:53:06.224 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:53:06.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:53:06.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:53:06.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-18 02:53:06.264 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:53:06.264 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:53:06.264 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 385 ms overall
17-03-18 02:53:06.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 02:53:06.354 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:06.354 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:53:06.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:53:06.364 -07 000000626 INF: Image SNR check: start
17-03-18 02:53:06.364 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:06.364 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:06.374 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:06.374 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:53:06.384 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=144.36]
17-03-18 02:53:06.384 -07 000000626 INF: Autofocus start
17-03-18 02:53:06.384 -07 000000626 INF: MeasureProfile start
17-03-18 02:53:06.394 -07 000000626 INF: MeasureProfile done
17-03-18 02:53:06.394 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:53:06.394 -07 000000626 INF: Autofocus finished
17-03-18 02:53:06.524 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:06.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:06.574 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:53:06.574 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-18 02:53:06.574 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178558835076198. ----------
17-03-18 02:53:06.584 -07 000000610 INF: Cycle	105	Tile	1	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:06.584 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37501, sync = True, waitForSettling = True)
17-03-18 02:53:06.584 -07 000000610 INF: Z Motor: Moving to -0.171669 mm, started at -0.178559 mm, distance = 6.89 um
17-03-18 02:53:06.584 -07 000000610 INF: FPGA: Xmit ZDACW 37501\n [Z Motor]
17-03-18 02:53:06.584 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:53:06.594 -07 000000610 INF: FPGA: 'ZDACW 37501' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:53:06.594 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:06.594 -07 000000590 INF: FPGA: Recv ZDACR 37501
17-03-18 02:53:06.604 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.604 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:06.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.754 -07 000000561 INF: FPGA: Recv ZSGSRD 36012
17-03-18 02:53:06.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:06.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.764 -07 000000618 INF: FPGA: Recv ZSGSRD 36018
17-03-18 02:53:06.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.774 -07 000000455 INF: FPGA: Recv ZSGSRD 36009
17-03-18 02:53:06.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.784 -07 000000501 INF: FPGA: Recv ZSGSRD 36011
17-03-18 02:53:06.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.794 -07 000000502 INF: FPGA: Recv ZSGSRD 36016
17-03-18 02:53:06.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.804 -07 000000606 INF: FPGA: Recv ZSGSRD 36014
17-03-18 02:53:06.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.814 -07 000000590 INF: FPGA: Recv ZSGSRD 36016
17-03-18 02:53:06.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.824 -07 000000569 INF: FPGA: Recv ZSGSRD 36007
17-03-18 02:53:06.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.834 -07 000000501 INF: FPGA: Recv ZSGSRD 36013
17-03-18 02:53:06.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:06.844 -07 000000455 INF: FPGA: Recv ZSGSRD 36012
17-03-18 02:53:06.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:06.854 -07 000000561 INF: FPGA: Recv ZPIEZORD 31885
17-03-18 02:53:06.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:06.864 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-18 02:53:06.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36013 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36007 (-170.8 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:53:06.864 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36013, posNoise = 5, negNoise = 6
17-03-18 02:53:06.864 -07 000000610 INF: Z Motor: After move to -0.171669, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:06.864 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:53:06.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:06.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:06.864 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:06.864 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:06.864 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:06.864 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:06.864 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:06.864 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:06.864 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:06.864 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:06.864 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:06.864 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:53:06.874 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:06.874 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:06.884 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:53:06.884 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:53:06.894 -07 000000461 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 02:53:06.894 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:06.894 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:06.894 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:06.904 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:53:06.904 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 02:53:06.904 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37678 150\n [Camera]
17-03-18 02:53:07.104 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:07.504 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:07.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:07.514 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:07.514 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:07.514 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 02:53:07.514 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:07.514 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:07.514 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:07.514 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:07.514 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 02:53:07.704 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37678 784
17-03-18 02:53:07.854 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:07.914 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:53:07.914 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:53:07.914 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:07.914 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:53:07.914 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:53:07.914 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:07.924 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:53:07.924 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:53:07.924 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:53:07.934 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 02:53:08.044 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:08.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:08.044 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:08.044 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:08.044 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 02:53:08.044 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:08.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:08.044 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:08.044 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:08.044 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:53:08.234 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:53:08.234 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:08.234 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37678 150' command took 2 ms to send, 1315 ms to get response, and 1326 ms overall
17-03-18 02:53:08.234 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:53:08.234 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.171678503872372. ------
17-03-18 02:53:08.244 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:08.244 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17799 mm
17-03-18 02:53:08.244 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:08.244 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:08.244 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38881, sync = True, waitForSettling = False)
17-03-18 02:53:08.244 -07 000000424 INF: Z Motor: Moving to -0.177986 mm, started at -0.171679 mm, distance = -6.31 um
17-03-18 02:53:08.244 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:53:08.244 -07 000000606 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 02:53:08.254 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:08.254 -07 000000424 INF: FPGA: Xmit ZDACW 38881\n [Z Motor]
17-03-18 02:53:08.254 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:53:08.264 -07 000000424 INF: FPGA: 'ZDACW 38881' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:53:08.264 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:08.264 -07 000000444 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:53:08.274 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:53:08.274 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:53:08.274 -07 000000606 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:08.274 -07 000000606 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:08.274 -07 000000606 INF: Y Motor: Moving 1332 steps2
17-03-18 02:53:08.284 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:08.284 -07 000000579 INF: FPGA: Recv ZDACR 38881
17-03-18 02:53:08.294 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:53:08.294 -07 000000424 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:53:08.294 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:08.444 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:53:08.444 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 02:53:08.444 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:08.444 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:53:08.444 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:53:08.444 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:08.454 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:53:08.454 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-18 02:53:08.454 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:53:08.464 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-18 02:53:08.474 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:53:08.474 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:53:08.664 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:53:08.664 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:53:08.704 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:08.714 -07 000000462 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:53:08.714 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:53:08.714 -07 000000606 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:08.714 -07 000000606 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:53:08.714 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.092 mm/sec
17-03-18 02:53:09.664 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:09.664 -07 000000455 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:53:09.674 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.674 -07 000000606 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:09.704 -07 000000606 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:09.704 -07 000000606 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:53:09.704 -07 000000606 INF: Y Motor: Moved to 60.7324 after 1453 ms (table move)
17-03-18 02:53:09.704 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177986 mm (DAC = 38881)
17-03-18 02:53:09.704 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.704 -07 000000576 INF: FPGA: Recv ZSGSRD 36993
17-03-18 02:53:09.714 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:09.714 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.714 -07 000000462 INF: FPGA: Recv ZSGSRD 37004
17-03-18 02:53:09.724 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.724 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.724 -07 000000590 INF: FPGA: Recv ZSGSRD 36995
17-03-18 02:53:09.734 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.734 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.734 -07 000000626 INF: FPGA: Recv ZSGSRD 37005
17-03-18 02:53:09.744 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.744 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.744 -07 000000444 INF: FPGA: Recv ZSGSRD 36998
17-03-18 02:53:09.754 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.754 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.754 -07 000000591 INF: FPGA: Recv ZSGSRD 36993
17-03-18 02:53:09.764 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.764 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.764 -07 000000424 INF: FPGA: Recv ZSGSRD 36995
17-03-18 02:53:09.774 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.774 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.774 -07 000000502 INF: FPGA: Recv ZSGSRD 36985
17-03-18 02:53:09.784 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.784 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.784 -07 000000626 INF: FPGA: Recv ZSGSRD 37001
17-03-18 02:53:09.794 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.794 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:09.794 -07 000000444 INF: FPGA: Recv ZSGSRD 36996
17-03-18 02:53:09.804 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.804 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:09.804 -07 000000569 INF: FPGA: Recv ZPIEZORD 33201
17-03-18 02:53:09.814 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:09.814 -07 000000629 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.933 V. Piezo Error = -8.4 V.
17-03-18 02:53:09.814 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36996 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36996 (-177.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36985 (-177.0 uncal um), Max = 37005 (-177.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:53:09.814 -07 000000629 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36996, posNoise = 9, negNoise = 11
17-03-18 02:53:09.814 -07 000000629 INF: Z Motor: After move to -0.177986, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:09.814 -07 000000629 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:53:09.814 -07 000000629 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:09.864 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-18 02:53:09.864 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:09.864 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:09.864 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:09.864 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:09.864 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:09.864 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:53:09.864 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:09.864 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:53:09.864 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:53:09.874 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:09.874 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:53:09.884 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:53:09.884 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-18 02:53:09.884 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:53:09.924 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:53:10.224 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:53:10.224 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:53:10.224 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:53:10.224 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) start.
17-03-18 02:53:10.264 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:53:10.264 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:53:10.264 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall
17-03-18 02:53:10.354 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2404847376, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:53:10.354 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:10.354 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:53:10.354 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:53:10.464 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:10.464 -07 000000467 INF: Autofocus start
17-03-18 02:53:10.464 -07 000000467 INF: MeasureProfile start
17-03-18 02:53:10.464 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:10.474 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:10.474 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:53:10.474 -07 000000467 INF: MeasureProfile done
17-03-18 02:53:10.474 -07 000000467 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:53:10.474 -07 000000467 INF: Autofocus finished
17-03-18 02:53:10.674 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:53:10.674 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:53:10.674 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.177993504407723. ----------
17-03-18 02:53:10.674 -07 000000610 INF: Cycle	105	Tile	2	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:10.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37396, sync = True, waitForSettling = True)
17-03-18 02:53:10.684 -07 000000610 INF: Z Motor: Moving to -0.171188 mm, started at -0.177994 mm, distance = 6.81 um
17-03-18 02:53:10.684 -07 000000610 INF: FPGA: Xmit ZDACW 37396\n [Z Motor]
17-03-18 02:53:10.684 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:53:10.694 -07 000000610 INF: FPGA: 'ZDACW 37396' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:10.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:10.704 -07 000000626 INF: FPGA: Recv ZDACR 37396
17-03-18 02:53:10.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:10.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:10.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.864 -07 000000502 INF: FPGA: Recv ZSGSRD 35942
17-03-18 02:53:10.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:10.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.874 -07 000000618 INF: FPGA: Recv ZSGSRD 35942
17-03-18 02:53:10.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:10.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.884 -07 000000629 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:53:10.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:10.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.894 -07 000000462 INF: FPGA: Recv ZSGSRD 35934
17-03-18 02:53:10.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:10.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.914 -07 000000455 INF: FPGA: Recv ZSGSRD 35942
17-03-18 02:53:10.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:10.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.924 -07 000000579 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:53:10.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:10.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.934 -07 000000569 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:53:10.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:10.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.944 -07 000000444 INF: FPGA: Recv ZSGSRD 35935
17-03-18 02:53:10.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:10.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.954 -07 000000502 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:53:10.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:10.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:10.964 -07 000000455 INF: FPGA: Recv ZSGSRD 35938
17-03-18 02:53:10.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:10.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:10.974 -07 000000512 INF: FPGA: Recv ZPIEZORD 31814
17-03-18 02:53:10.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:10.984 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -9.1 V.
17-03-18 02:53:10.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35938 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35938 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35934 (-170.3 uncal um), Max = 35942 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:53:10.984 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35938, posNoise = 4, negNoise = 4
17-03-18 02:53:10.984 -07 000000610 INF: Z Motor: After move to -0.171188, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:10.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 301 ms)
17-03-18 02:53:10.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:10.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:10.984 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:10.984 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:10.984 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:10.984 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:10.984 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:10.984 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:10.984 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:10.984 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:10.984 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:10.984 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:10.994 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:10.994 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:10.994 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:10.994 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:11.004 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:53:11.004 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:53:11.004 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:53:11.004 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:53:11.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37573 150\n [Camera]
17-03-18 02:53:11.214 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:11.224 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.99219,
17-03-18 02:53:11.524 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:11.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:11.604 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:11.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:11.614 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:11.614 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:11.614 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-18 02:53:11.614 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:11.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:11.614 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:11.614 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:11.614 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-18 02:53:11.804 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37573 784
17-03-18 02:53:11.954 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:11.994 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:53:11.994 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:53:11.994 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:12.004 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:12.004 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:53:12.004 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:53:12.004 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:12.004 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:12.004 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:53:12.004 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:53:12.144 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:12.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:12.144 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:12.274 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:12.274 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:12.274 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:12.284 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:12.284 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:53:12.284 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:12.284 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:53:12.334 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:53:12.334 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:12.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37573 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:53:12.334 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171850
17-03-18 02:53:12.334 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17185 mm
17-03-18 02:53:12.334 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:12.344 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:53:12.344 -07 000000629 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:53:12.344 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:12.344 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 37541, sync = True, waitForSettling = False)
17-03-18 02:53:12.344 -07 000000591 INF: Z Motor: Moving to -0.171852 mm, started at -0.171197 mm, distance = -0.65 um
17-03-18 02:53:12.344 -07 000000430 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:53:12.354 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:12.354 -07 000000629 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:12.354 -07 000000629 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:12.354 -07 000000629 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:53:12.354 -07 000000591 INF: FPGA: Xmit ZDACW 37541\n [Z Motor]
17-03-18 02:53:12.354 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:53:12.364 -07 000000591 INF: FPGA: 'ZDACW 37541' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:53:12.364 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:12.364 -07 000000606 INF: FPGA: Recv ZDACR 37541
17-03-18 02:53:12.374 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:12.374 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:12.374 -07 000000591 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 02:53:12.684 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:53:12.684 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:53:12.684 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:12.684 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:53:12.684 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:53:12.684 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:12.684 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:12.684 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 542 ms.
17-03-18 02:53:12.684 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:12.694 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-18 02:53:12.744 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:53:12.744 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:53:12.794 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:12.794 -07 000000461 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:53:12.804 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:12.804 -07 000000629 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:12.804 -07 000000629 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:53:12.804 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 02:53:13.754 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:13.754 -07 000000501 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:53:13.764 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:13.764 -07 000000629 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:13.784 -07 000000629 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:13.784 -07 000000629 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:53:13.784 -07 000000629 INF: Y Motor: Moved to 61.5635 after 1448 ms (table move)
17-03-18 02:53:13.794 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171852 mm (DAC = 37541)
17-03-18 02:53:13.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.794 -07 000000561 INF: FPGA: Recv ZSGSRD 36041
17-03-18 02:53:13.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:13.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.804 -07 000000569 INF: FPGA: Recv ZSGSRD 36037
17-03-18 02:53:13.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.814 -07 000000591 INF: FPGA: Recv ZSGSRD 36039
17-03-18 02:53:13.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.824 -07 000000606 INF: FPGA: Recv ZSGSRD 36039
17-03-18 02:53:13.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.834 -07 000000569 INF: FPGA: Recv ZSGSRD 36046
17-03-18 02:53:13.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:13.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.844 -07 000000629 INF: FPGA: Recv ZSGSRD 36043
17-03-18 02:53:13.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.854 -07 000000561 INF: FPGA: Recv ZSGSRD 36038
17-03-18 02:53:13.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.864 -07 000000576 INF: FPGA: Recv ZSGSRD 36038
17-03-18 02:53:13.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.874 -07 000000455 INF: FPGA: Recv ZSGSRD 36037
17-03-18 02:53:13.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:13.884 -07 000000501 INF: FPGA: Recv ZSGSRD 36038
17-03-18 02:53:13.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:13.894 -07 000000629 INF: FPGA: Recv ZPIEZORD 31946
17-03-18 02:53:13.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.904 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.728 V. Piezo Error = -9.0 V.
17-03-18 02:53:13.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36040 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36038 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36037 (-171.0 uncal um), Max = 36046 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:53:13.904 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36040, posNoise = 6, negNoise = 3
17-03-18 02:53:13.904 -07 000000610 INF: Z Motor: After move to -0.171852, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:13.904 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:53:13.904 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:13.954 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:53:13.954 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:13.954 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.1718519576002. ----------
17-03-18 02:53:13.954 -07 000000610 INF: Cycle	105	Tile	3	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:13.954 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37364, sync = True, waitForSettling = True)
17-03-18 02:53:13.954 -07 000000610 INF: Z Motor: Moving to -0.171041 mm, started at -0.171852 mm, distance = 0.81 um
17-03-18 02:53:13.954 -07 000000610 INF: FPGA: Xmit ZDACW 37364\n [Z Motor]
17-03-18 02:53:13.954 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:53:13.964 -07 000000610 INF: FPGA: 'ZDACW 37364' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:13.964 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:13.964 -07 000000591 INF: FPGA: Recv ZDACR 37364
17-03-18 02:53:13.974 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:13.974 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:14.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.124 -07 000000561 INF: FPGA: Recv ZSGSRD 35918
17-03-18 02:53:14.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:14.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.134 -07 000000502 INF: FPGA: Recv ZSGSRD 35918
17-03-18 02:53:14.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.144 -07 000000424 INF: FPGA: Recv ZSGSRD 35923
17-03-18 02:53:14.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.154 -07 000000569 INF: FPGA: Recv ZSGSRD 35919
17-03-18 02:53:14.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.164 -07 000000629 INF: FPGA: Recv ZSGSRD 35913
17-03-18 02:53:14.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.174 -07 000000462 INF: FPGA: Recv ZSGSRD 35914
17-03-18 02:53:14.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.184 -07 000000502 INF: FPGA: Recv ZSGSRD 35911
17-03-18 02:53:14.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.194 -07 000000424 INF: FPGA: Recv ZSGSRD 35915
17-03-18 02:53:14.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.204 -07 000000461 INF: FPGA: Recv ZSGSRD 35916
17-03-18 02:53:14.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:14.214 -07 000000501 INF: FPGA: Recv ZSGSRD 35916
17-03-18 02:53:14.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:14.224 -07 000000467 INF: FPGA: Recv ZPIEZORD 31782
17-03-18 02:53:14.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:14.234 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.701 V. Piezo Error = -9.1 V.
17-03-18 02:53:14.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35916 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35911 (-170.1 uncal um), Max = 35923 (-170.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:53:14.234 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 7, negNoise = 5
17-03-18 02:53:14.234 -07 000000610 INF: Z Motor: After move to -0.171041, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:14.234 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:53:14.234 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:14.234 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:14.234 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:14.234 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:14.234 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:14.234 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:14.234 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:14.234 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:14.234 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:14.234 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:14.234 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:14.234 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:14.234 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:14.234 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:14.234 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:14.234 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:14.244 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:53:14.244 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:53:14.244 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:53:14.244 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:53:14.254 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37541 150\n [Camera]
17-03-18 02:53:14.454 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:14.854 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:14.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:14.854 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:14.854 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:14.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:14.854 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:14.864 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:14.864 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 02:53:14.864 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:14.864 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:53:15.044 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37541 784
17-03-18 02:53:15.194 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:53:15.234 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:53:15.234 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:53:15.234 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:15.244 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:15.244 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:53:15.244 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:53:15.244 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:15.244 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:15.244 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:53:15.244 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:53:15.384 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:15.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:15.384 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:15.504 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:15.504 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:15.514 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:15.514 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:15.514 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:53:15.514 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:15.514 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:53:15.574 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:53:15.584 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:15.584 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37541 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-18 02:53:15.584 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171367
17-03-18 02:53:15.584 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17137 mm
17-03-18 02:53:15.584 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:15.584 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:53:15.584 -07 000000502 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-18 02:53:15.584 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:15.584 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37435, sync = True, waitForSettling = False)
17-03-18 02:53:15.584 -07 000000455 INF: Z Motor: Moving to -0.171366 mm, started at -0.171055 mm, distance = -0.31 um
17-03-18 02:53:15.584 -07 000000424 INF: FPGA: Recv YRDPOS 126082
17-03-18 02:53:15.594 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:15.594 -07 000000502 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:15.594 -07 000000502 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:15.594 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:53:15.594 -07 000000455 INF: FPGA: Xmit ZDACW 37435\n [Z Motor]
17-03-18 02:53:15.594 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:53:15.604 -07 000000455 INF: FPGA: 'ZDACW 37435' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:53:15.604 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:15.604 -07 000000606 INF: FPGA: Recv ZDACR 37435
17-03-18 02:53:15.614 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:15.614 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:15.614 -07 000000455 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 02:53:15.904 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:53:15.904 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:53:15.904 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:15.904 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:53:15.904 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:53:15.904 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:15.914 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:15.914 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-18 02:53:15.914 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:15.924 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:53:15.984 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:53:15.984 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:53:16.034 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:16.034 -07 000000444 INF: FPGA: Recv YRDPOS 127784
17-03-18 02:53:16.044 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:16.044 -07 000000502 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:16.044 -07 000000502 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:53:16.044 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 02:53:16.524 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:16.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:16.584 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.000345,
17-03-18 02:53:16.994 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:16.994 -07 000000467 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:53:17.004 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.004 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:17.024 -07 000000502 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:17.024 -07 000000502 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:53:17.024 -07 000000502 INF: Y Motor: Moved to 62.3950 after 1442 ms (table move)
17-03-18 02:53:17.034 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171366 mm (DAC = 37435)
17-03-18 02:53:17.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.034 -07 000000569 INF: FPGA: Recv ZSGSRD 35957
17-03-18 02:53:17.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:17.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.044 -07 000000462 INF: FPGA: Recv ZSGSRD 35964
17-03-18 02:53:17.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.054 -07 000000430 INF: FPGA: Recv ZSGSRD 35971
17-03-18 02:53:17.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.064 -07 000000629 INF: FPGA: Recv ZSGSRD 35970
17-03-18 02:53:17.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.074 -07 000000590 INF: FPGA: Recv ZSGSRD 35961
17-03-18 02:53:17.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.084 -07 000000576 INF: FPGA: Recv ZSGSRD 35965
17-03-18 02:53:17.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.094 -07 000000618 INF: FPGA: Recv ZSGSRD 35968
17-03-18 02:53:17.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.104 -07 000000502 INF: FPGA: Recv ZSGSRD 35965
17-03-18 02:53:17.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.114 -07 000000579 INF: FPGA: Recv ZSGSRD 35966
17-03-18 02:53:17.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.124 -07 000000424 INF: FPGA: Recv ZSGSRD 35958
17-03-18 02:53:17.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:17.134 -07 000000569 INF: FPGA: Recv ZPIEZORD 31842
17-03-18 02:53:17.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.144 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.712 V. Piezo Error = -9.1 V.
17-03-18 02:53:17.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35964 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35965 (-170.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35957 (-170.4 uncal um), Max = 35971 (-170.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:53:17.144 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35964, posNoise = 7, negNoise = 7
17-03-18 02:53:17.144 -07 000000610 INF: Z Motor: After move to -0.171366, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:17.144 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 109 ms (allowed 150 ms), total time = 1555 ms
17-03-18 02:53:17.144 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:17.194 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:53:17.194 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:17.194 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.171363717477426. ----------
17-03-18 02:53:17.194 -07 000000610 INF: Cycle	105	Tile	4	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:17.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37258, sync = True, waitForSettling = True)
17-03-18 02:53:17.194 -07 000000610 INF: Z Motor: Moving to -0.170556 mm, started at -0.171364 mm, distance = 0.81 um
17-03-18 02:53:17.194 -07 000000610 INF: FPGA: Xmit ZDACW 37258\n [Z Motor]
17-03-18 02:53:17.194 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:53:17.204 -07 000000610 INF: FPGA: 'ZDACW 37258' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:17.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:17.204 -07 000000512 INF: FPGA: Recv ZDACR 37258
17-03-18 02:53:17.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:17.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.364 -07 000000561 INF: FPGA: Recv ZSGSRD 35842
17-03-18 02:53:17.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.374 -07 000000455 INF: FPGA: Recv ZSGSRD 35843
17-03-18 02:53:17.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.384 -07 000000626 INF: FPGA: Recv ZSGSRD 35843
17-03-18 02:53:17.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.394 -07 000000629 INF: FPGA: Recv ZSGSRD 35836
17-03-18 02:53:17.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.404 -07 000000590 INF: FPGA: Recv ZSGSRD 35838
17-03-18 02:53:17.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.414 -07 000000576 INF: FPGA: Recv ZSGSRD 35840
17-03-18 02:53:17.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.424 -07 000000467 INF: FPGA: Recv ZSGSRD 35835
17-03-18 02:53:17.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.434 -07 000000444 INF: FPGA: Recv ZSGSRD 35843
17-03-18 02:53:17.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.444 -07 000000579 INF: FPGA: Recv ZSGSRD 35844
17-03-18 02:53:17.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:17.454 -07 000000501 INF: FPGA: Recv ZSGSRD 35839
17-03-18 02:53:17.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:17.464 -07 000000579 INF: FPGA: Recv ZPIEZORD 31643
17-03-18 02:53:17.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:17.474 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.685 V. Piezo Error = -9.3 V.
17-03-18 02:53:17.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35840 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35841 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35835 (-169.7 uncal um), Max = 35844 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:53:17.474 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35840, posNoise = 4, negNoise = 5
17-03-18 02:53:17.474 -07 000000610 INF: Z Motor: After move to -0.170556, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:17.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:53:17.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:17.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:17.474 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:17.474 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:17.474 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:17.474 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:17.474 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:17.474 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:17.474 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:17.474 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:17.474 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:17.474 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:17.474 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:17.474 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:17.484 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:53:17.484 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:17.494 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-18 02:53:17.494 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:53:17.494 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:53:17.494 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:53:17.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37435 150\n [Camera]
17-03-18 02:53:17.694 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:18.094 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:18.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:18.094 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:18.104 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:18.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:18.104 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:18.104 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:18.104 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 02:53:18.104 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:18.104 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:53:18.294 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37435 784
17-03-18 02:53:18.444 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:18.484 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:53:18.484 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:53:18.484 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:18.484 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:53:18.484 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:53:18.484 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:18.484 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:18.484 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:53:18.484 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:18.494 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:53:18.634 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:18.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:18.634 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:18.634 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:18.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:18.634 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:18.644 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:18.644 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:53:18.644 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:18.644 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:53:18.824 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:53:18.824 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:18.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37435 150' command took 2 ms to send, 1316 ms to get response, and 1327 ms overall
17-03-18 02:53:18.824 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171045
17-03-18 02:53:18.824 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17105 mm
17-03-18 02:53:18.824 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:18.834 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:53:18.834 -07 000000606 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:53:18.834 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:18.834 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 37365, sync = True, waitForSettling = False)
17-03-18 02:53:18.834 -07 000000579 INF: Z Motor: Moving to -0.171046 mm, started at -0.170567 mm, distance = -0.48 um
17-03-18 02:53:18.834 -07 000000444 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:53:18.844 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:18.844 -07 000000606 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:18.844 -07 000000606 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:18.844 -07 000000606 INF: Y Motor: Moving 1340 steps-17
17-03-18 02:53:18.844 -07 000000579 INF: FPGA: Xmit ZDACW 37365\n [Z Motor]
17-03-18 02:53:18.844 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:53:18.854 -07 000000579 INF: FPGA: 'ZDACW 37365' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:53:18.854 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:18.864 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:18.864 -07 000000462 INF: FPGA: Recv ZDACR 37365
17-03-18 02:53:18.874 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:18.874 -07 000000579 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:53:19.024 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:53:19.024 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:53:19.024 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:19.024 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:53:19.024 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:53:19.024 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:19.024 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:53:19.024 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:53:19.024 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:53:19.034 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:53:19.224 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:53:19.224 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 02:53:19.284 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:19.284 -07 000000444 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:53:19.294 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:19.294 -07 000000606 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:19.294 -07 000000606 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:53:19.294 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-18 02:53:20.244 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:20.244 -07 000000501 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:53:20.254 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.254 -07 000000606 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:20.284 -07 000000606 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:20.284 -07 000000606 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:53:20.284 -07 000000606 INF: Y Motor: Moved to 63.2231 after 1449 ms (table move)
17-03-18 02:53:20.284 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171046 mm (DAC = 37365)
17-03-18 02:53:20.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.284 -07 000000424 INF: FPGA: Recv ZSGSRD 35915
17-03-18 02:53:20.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:20.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.294 -07 000000467 INF: FPGA: Recv ZSGSRD 35909
17-03-18 02:53:20.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.304 -07 000000576 INF: FPGA: Recv ZSGSRD 35912
17-03-18 02:53:20.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.314 -07 000000430 INF: FPGA: Recv ZSGSRD 35926
17-03-18 02:53:20.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.324 -07 000000569 INF: FPGA: Recv ZSGSRD 35918
17-03-18 02:53:20.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.374 -07 000000444 INF: FPGA: Recv ZSGSRD 35919
17-03-18 02:53:20.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:20.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.384 -07 000000561 INF: FPGA: Recv ZSGSRD 35925
17-03-18 02:53:20.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.394 -07 000000606 INF: FPGA: Recv ZSGSRD 35917
17-03-18 02:53:20.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.404 -07 000000444 INF: FPGA: Recv ZSGSRD 35923
17-03-18 02:53:20.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.414 -07 000000626 INF: FPGA: Recv ZSGSRD 35916
17-03-18 02:53:20.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:20.424 -07 000000569 INF: FPGA: Recv ZPIEZORD 31775
17-03-18 02:53:20.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.434 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.1 V.
17-03-18 02:53:20.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35918 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35918 (-170.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35909 (-170.1 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:53:20.434 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35918, posNoise = 8, negNoise = 9
17-03-18 02:53:20.434 -07 000000610 INF: Z Motor: After move to -0.171046, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:20.434 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 147 ms (allowed 150 ms), total time = 1598 ms
17-03-18 02:53:20.434 -07 000000610 INF: Z Motor: Waiting extra 3 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:20.444 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 02:53:20.444 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:20.444 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.171068203718905. ----------
17-03-18 02:53:20.444 -07 000000610 INF: Cycle	105	Tile	5	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:20.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37188, sync = True, waitForSettling = True)
17-03-18 02:53:20.444 -07 000000610 INF: Z Motor: Moving to -0.170236 mm, started at -0.171068 mm, distance = 0.83 um
17-03-18 02:53:20.444 -07 000000610 INF: FPGA: Xmit ZDACW 37188\n [Z Motor]
17-03-18 02:53:20.444 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:53:20.454 -07 000000610 INF: FPGA: 'ZDACW 37188' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:20.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:20.454 -07 000000591 INF: FPGA: Recv ZDACR 37188
17-03-18 02:53:20.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:20.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.614 -07 000000502 INF: FPGA: Recv ZSGSRD 35800
17-03-18 02:53:20.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:20.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.624 -07 000000501 INF: FPGA: Recv ZSGSRD 35786
17-03-18 02:53:20.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.634 -07 000000424 INF: FPGA: Recv ZSGSRD 35792
17-03-18 02:53:20.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.644 -07 000000467 INF: FPGA: Recv ZSGSRD 35788
17-03-18 02:53:20.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.654 -07 000000590 INF: FPGA: Recv ZSGSRD 35788
17-03-18 02:53:20.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.664 -07 000000561 INF: FPGA: Recv ZSGSRD 35792
17-03-18 02:53:20.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.674 -07 000000512 INF: FPGA: Recv ZSGSRD 35791
17-03-18 02:53:20.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.684 -07 000000618 INF: FPGA: Recv ZSGSRD 35790
17-03-18 02:53:20.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.694 -07 000000579 INF: FPGA: Recv ZSGSRD 35788
17-03-18 02:53:20.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:20.704 -07 000000569 INF: FPGA: Recv ZSGSRD 35787
17-03-18 02:53:20.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:20.714 -07 000000502 INF: FPGA: Recv ZPIEZORD 31612
17-03-18 02:53:20.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:20.724 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.675 V. Piezo Error = -9.2 V.
17-03-18 02:53:20.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35790 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35789 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35786 (-169.3 uncal um), Max = 35800 (-169.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:53:20.724 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35790, posNoise = 10, negNoise = 4
17-03-18 02:53:20.724 -07 000000610 INF: Z Motor: After move to -0.170236, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:20.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:53:20.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:20.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:20.724 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:20.724 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:20.724 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:20.724 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:20.724 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:20.724 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:20.724 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:20.724 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:20.724 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:20.724 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:20.734 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:53:20.734 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:20.734 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:20.734 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:20.744 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:53:20.744 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:53:20.744 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:53:20.744 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:53:20.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37365 150\n [Camera]
17-03-18 02:53:20.944 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:21.344 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:21.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:21.344 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:21.354 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:21.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:21.354 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:21.464 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:21.464 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 02:53:21.464 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:21.464 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:53:21.524 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:21.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:21.544 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37365 784
17-03-18 02:53:21.694 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:21.844 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:53:21.844 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:53:21.844 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:21.844 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:21.844 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:53:21.844 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:53:21.844 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:21.854 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:21.854 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-18 02:53:21.854 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-18 02:53:21.884 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:21.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:21.884 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:21.884 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:21.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:21.884 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:21.884 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:21.884 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:53:21.894 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:21.894 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 02:53:21.944 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.02213,
17-03-18 02:53:22.074 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:53:22.074 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:22.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37365 150' command took 2 ms to send, 1315 ms to get response, and 1325 ms overall
17-03-18 02:53:22.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:53:22.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.17024590456476. ------
17-03-18 02:53:22.084 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:22.084 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17672 mm
17-03-18 02:53:22.084 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:22.084 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38605, sync = True, waitForSettling = False)
17-03-18 02:53:22.084 -07 000000618 INF: Z Motor: Moving to -0.176722 mm, started at -0.170246 mm, distance = -6.48 um
17-03-18 02:53:22.084 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:22.084 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:53:22.084 -07 000000569 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 02:53:22.094 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:22.094 -07 000000618 INF: FPGA: Xmit ZDACW 38605\n [Z Motor]
17-03-18 02:53:22.094 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:53:22.104 -07 000000618 INF: FPGA: 'ZDACW 38605' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:53:22.104 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:22.104 -07 000000462 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:53:22.114 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:53:22.114 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:53:22.114 -07 000000569 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:22.114 -07 000000569 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:22.114 -07 000000569 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:53:22.124 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:22.124 -07 000000462 INF: FPGA: Recv ZDACR 38605
17-03-18 02:53:22.134 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:22.134 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:53:22.134 -07 000000618 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:53:22.264 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:53:22.264 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:53:22.264 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:22.264 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:53:22.264 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:53:22.264 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:22.274 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:22.274 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:53:22.274 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:22.284 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:53:22.314 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:53:22.314 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:53:22.504 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:53:22.504 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-18 02:53:22.554 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:22.554 -07 000000501 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:53:22.564 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:53:22.564 -07 000000569 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:22.564 -07 000000569 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 02:53:22.564 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.136 mm/sec
17-03-18 02:53:23.514 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:23.514 -07 000000502 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:53:23.524 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:23.524 -07 000000569 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:23.544 -07 000000569 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:23.544 -07 000000569 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:53:23.544 -07 000000569 INF: Y Motor: Moved to 64.0566 after 1461 ms (table move)
17-03-18 02:53:23.544 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176722 mm (DAC = 38605)
17-03-18 02:53:23.554 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.554 -07 000000579 INF: FPGA: Recv ZSGSRD 36799
17-03-18 02:53:23.564 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:23.564 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.564 -07 000000590 INF: FPGA: Recv ZSGSRD 36804
17-03-18 02:53:23.574 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.574 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.574 -07 000000430 INF: FPGA: Recv ZSGSRD 36802
17-03-18 02:53:23.584 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.584 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.584 -07 000000629 INF: FPGA: Recv ZSGSRD 36796
17-03-18 02:53:23.594 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.594 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.594 -07 000000579 INF: FPGA: Recv ZSGSRD 36803
17-03-18 02:53:23.604 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.604 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.604 -07 000000462 INF: FPGA: Recv ZSGSRD 36800
17-03-18 02:53:23.614 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.614 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.614 -07 000000444 INF: FPGA: Recv ZSGSRD 36795
17-03-18 02:53:23.624 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.624 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.624 -07 000000618 INF: FPGA: Recv ZSGSRD 36799
17-03-18 02:53:23.634 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.634 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.634 -07 000000590 INF: FPGA: Recv ZSGSRD 36798
17-03-18 02:53:23.644 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.644 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:23.644 -07 000000591 INF: FPGA: Recv ZSGSRD 36807
17-03-18 02:53:23.654 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.654 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:23.654 -07 000000430 INF: FPGA: Recv ZPIEZORD 32935
17-03-18 02:53:23.664 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:23.664 -07 000000626 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.891 V. Piezo Error = -8.5 V.
17-03-18 02:53:23.664 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36800 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36800 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36795 (-175.8 uncal um), Max = 36807 (-175.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:53:23.664 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36800, posNoise = 7, negNoise = 5
17-03-18 02:53:23.664 -07 000000626 INF: Z Motor: After move to -0.176722, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:23.664 -07 000000626 INF: Z Motor: Settle wait time = 1465 ms, measure time = 110 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:53:23.664 -07 000000626 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:23.704 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-18 02:53:23.704 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:23.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:23.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:23.704 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:23.704 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:23.704 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:53:23.704 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:23.704 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:53:23.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:53:23.714 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:23.714 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:53:23.724 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:53:23.724 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:53:23.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:53:23.774 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:53:24.074 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:53:24.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:53:24.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:53:24.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-18 02:53:24.104 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:53:24.114 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:53:24.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall
17-03-18 02:53:24.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:53:24.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:24.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:53:24.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 02:53:24.214 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:24.214 -07 000000430 INF: Autofocus start
17-03-18 02:53:24.214 -07 000000430 INF: MeasureProfile start
17-03-18 02:53:24.214 -07 000000444 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:24.224 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:24.224 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:53:24.224 -07 000000430 INF: MeasureProfile done
17-03-18 02:53:24.224 -07 000000430 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:53:24.224 -07 000000430 INF: Autofocus finished
17-03-18 02:53:24.424 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:53:24.424 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:53:24.424 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.176734358827938. ----------
17-03-18 02:53:24.434 -07 000000610 INF: Cycle	105	Tile	6	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:24.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37102, sync = True, waitForSettling = True)
17-03-18 02:53:24.434 -07 000000610 INF: Z Motor: Moving to -0.169842 mm, started at -0.176734 mm, distance = 6.89 um
17-03-18 02:53:24.434 -07 000000610 INF: FPGA: Xmit ZDACW 37102\n [Z Motor]
17-03-18 02:53:24.434 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:53:24.444 -07 000000610 INF: FPGA: 'ZDACW 37102' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:53:24.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:24.444 -07 000000576 INF: FPGA: Recv ZDACR 37102
17-03-18 02:53:24.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:24.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.604 -07 000000444 INF: FPGA: Recv ZSGSRD 35729
17-03-18 02:53:24.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:24.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.614 -07 000000501 INF: FPGA: Recv ZSGSRD 35731
17-03-18 02:53:24.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.624 -07 000000579 INF: FPGA: Recv ZSGSRD 35722
17-03-18 02:53:24.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.634 -07 000000629 INF: FPGA: Recv ZSGSRD 35723
17-03-18 02:53:24.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.644 -07 000000455 INF: FPGA: Recv ZSGSRD 35729
17-03-18 02:53:24.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.654 -07 000000591 INF: FPGA: Recv ZSGSRD 35729
17-03-18 02:53:24.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.664 -07 000000502 INF: FPGA: Recv ZSGSRD 35730
17-03-18 02:53:24.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.674 -07 000000569 INF: FPGA: Recv ZSGSRD 35727
17-03-18 02:53:24.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.684 -07 000000590 INF: FPGA: Recv ZSGSRD 35727
17-03-18 02:53:24.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:24.694 -07 000000576 INF: FPGA: Recv ZSGSRD 35728
17-03-18 02:53:24.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:24.704 -07 000000606 INF: FPGA: Recv ZPIEZORD 31472
17-03-18 02:53:24.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:24.714 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.661 V. Piezo Error = -9.4 V.
17-03-18 02:53:24.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35728 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35728 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35722 (-168.9 uncal um), Max = 35731 (-169.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:53:24.714 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35728, posNoise = 3, negNoise = 6
17-03-18 02:53:24.714 -07 000000610 INF: Z Motor: After move to -0.169842, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:24.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:53:24.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:24.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:24.714 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:24.714 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:24.714 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:24.714 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:24.714 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:24.714 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:24.714 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:53:24.714 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:24.714 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:24.714 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:24.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:24.724 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:24.724 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:53:24.724 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:24.734 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:53:24.734 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:53:24.734 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:53:24.734 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:53:24.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37278 150\n [Camera]
17-03-18 02:53:24.934 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:25.334 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:25.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:25.334 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:25.334 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:25.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:25.334 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:25.334 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:25.334 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:53:25.344 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:25.344 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:53:25.524 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37278 787
17-03-18 02:53:25.674 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:25.724 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:53:25.724 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:53:25.724 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:25.724 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:53:25.724 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:53:25.724 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:25.724 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:25.734 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:25.734 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:53:25.734 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:53:25.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:25.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:25.864 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:25.874 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:25.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:25.874 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:25.984 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:25.984 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:53:25.984 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:25.984 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:53:26.054 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:53:26.054 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:26.054 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37278 150' command took 2 ms to send, 1319 ms to get response, and 1325 ms overall
17-03-18 02:53:26.064 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170297
17-03-18 02:53:26.064 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17030 mm
17-03-18 02:53:26.064 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:26.064 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:53:26.064 -07 000000591 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-18 02:53:26.064 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:26.064 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37201, sync = True, waitForSettling = False)
17-03-18 02:53:26.064 -07 000000501 INF: Z Motor: Moving to -0.170295 mm, started at -0.169848 mm, distance = -0.45 um
17-03-18 02:53:26.064 -07 000000569 INF: FPGA: Recv YRDPOS 131188
17-03-18 02:53:26.074 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:53:26.074 -07 000000591 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:26.074 -07 000000591 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:26.074 -07 000000591 INF: Y Motor: Moving 1338 steps-13
17-03-18 02:53:26.074 -07 000000501 INF: FPGA: Xmit ZDACW 37201\n [Z Motor]
17-03-18 02:53:26.074 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:53:26.084 -07 000000501 INF: FPGA: 'ZDACW 37201' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:53:26.084 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:26.094 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:26.094 -07 000000618 INF: FPGA: Recv ZDACR 37201
17-03-18 02:53:26.104 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:26.104 -07 000000501 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 02:53:26.364 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:53:26.364 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:53:26.364 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:26.364 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:53:26.364 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:53:26.364 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:26.364 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:26.374 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:26.374 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-18 02:53:26.374 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 02:53:26.454 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:53:26.454 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:53:26.504 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:26.504 -07 000000579 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:53:26.514 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:26.514 -07 000000591 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:26.514 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:53:26.514 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.836 mm, average velocity = 2.155 mm/sec
17-03-18 02:53:26.524 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:26.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:27.304 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.043918,
17-03-18 02:53:27.464 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:27.464 -07 000000430 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:53:27.474 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:27.474 -07 000000591 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:27.494 -07 000000591 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:27.494 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:53:27.494 -07 000000591 INF: Y Motor: Moved to 64.8784 after 1434 ms (table move)
17-03-18 02:53:27.504 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170295 mm (DAC = 37201)
17-03-18 02:53:27.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.504 -07 000000501 INF: FPGA: Recv ZSGSRD 35795
17-03-18 02:53:27.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:53:27.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.514 -07 000000455 INF: FPGA: Recv ZSGSRD 35800
17-03-18 02:53:27.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.524 -07 000000590 INF: FPGA: Recv ZSGSRD 35804
17-03-18 02:53:27.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.534 -07 000000569 INF: FPGA: Recv ZSGSRD 35799
17-03-18 02:53:27.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.544 -07 000000430 INF: FPGA: Recv ZSGSRD 35806
17-03-18 02:53:27.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.554 -07 000000561 INF: FPGA: Recv ZSGSRD 35798
17-03-18 02:53:27.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.564 -07 000000512 INF: FPGA: Recv ZSGSRD 35796
17-03-18 02:53:27.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.574 -07 000000590 INF: FPGA: Recv ZSGSRD 35800
17-03-18 02:53:27.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.584 -07 000000569 INF: FPGA: Recv ZSGSRD 35797
17-03-18 02:53:27.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.594 -07 000000444 INF: FPGA: Recv ZSGSRD 35805
17-03-18 02:53:27.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:27.604 -07 000000424 INF: FPGA: Recv ZPIEZORD 31583
17-03-18 02:53:27.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.614 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.3 V.
17-03-18 02:53:27.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35800 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35800 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35795 (-169.4 uncal um), Max = 35806 (-169.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:53:27.614 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35800, posNoise = 6, negNoise = 5
17-03-18 02:53:27.614 -07 000000610 INF: Z Motor: After move to -0.170295, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:27.614 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 108 ms (allowed 150 ms), total time = 1545 ms
17-03-18 02:53:27.614 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:27.664 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 02:53:27.664 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:27.664 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.170310146686177. ----------
17-03-18 02:53:27.664 -07 000000610 INF: Cycle	105	Tile	7	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:27.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37025, sync = True, waitForSettling = True)
17-03-18 02:53:27.664 -07 000000610 INF: Z Motor: Moving to -0.169490 mm, started at -0.170310 mm, distance = 0.82 um
17-03-18 02:53:27.664 -07 000000610 INF: FPGA: Xmit ZDACW 37025\n [Z Motor]
17-03-18 02:53:27.664 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:53:27.674 -07 000000610 INF: FPGA: 'ZDACW 37025' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:53:27.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:27.674 -07 000000462 INF: FPGA: Recv ZDACR 37025
17-03-18 02:53:27.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:27.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.834 -07 000000512 INF: FPGA: Recv ZSGSRD 35679
17-03-18 02:53:27.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:27.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.844 -07 000000444 INF: FPGA: Recv ZSGSRD 35675
17-03-18 02:53:27.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.854 -07 000000462 INF: FPGA: Recv ZSGSRD 35678
17-03-18 02:53:27.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.864 -07 000000501 INF: FPGA: Recv ZSGSRD 35670
17-03-18 02:53:27.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.874 -07 000000591 INF: FPGA: Recv ZSGSRD 35674
17-03-18 02:53:27.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.884 -07 000000569 INF: FPGA: Recv ZSGSRD 35671
17-03-18 02:53:27.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.894 -07 000000430 INF: FPGA: Recv ZSGSRD 35676
17-03-18 02:53:27.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.904 -07 000000461 INF: FPGA: Recv ZSGSRD 35676
17-03-18 02:53:27.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.914 -07 000000501 INF: FPGA: Recv ZSGSRD 35668
17-03-18 02:53:27.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:27.924 -07 000000590 INF: FPGA: Recv ZSGSRD 35678
17-03-18 02:53:27.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:27.934 -07 000000618 INF: FPGA: Recv ZPIEZORD 31416
17-03-18 02:53:27.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:27.944 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -9.4 V.
17-03-18 02:53:27.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35674 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35676 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35668 (-168.6 uncal um), Max = 35679 (-168.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:53:27.944 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35674, posNoise = 5, negNoise = 6
17-03-18 02:53:27.944 -07 000000610 INF: Z Motor: After move to -0.169490, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:27.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:53:27.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:27.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:27.944 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:27.944 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:27.944 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:27.944 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:27.944 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:27.944 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:27.944 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:27.944 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:27.944 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:27.944 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:27.944 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:27.944 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:27.954 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:27.954 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:27.964 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:53:27.964 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:53:27.964 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:53:27.964 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:53:27.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37201 150\n [Camera]
17-03-18 02:53:28.164 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:28.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:28.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:28.574 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:28.574 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:28.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:28.574 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:28.574 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:28.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:53:28.574 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:28.574 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:53:28.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37201 784
17-03-18 02:53:28.914 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:28.944 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 02:53:28.944 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 02:53:28.944 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:28.944 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:53:28.944 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:53:28.944 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:28.954 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:53:28.954 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:28.954 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:53:28.954 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:53:29.104 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:29.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:29.104 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:29.104 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:29.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:29.104 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:29.104 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:29.104 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:53:29.114 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:29.114 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:53:29.434 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:53:29.434 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:29.434 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37201 150' command took 2 ms to send, 1455 ms to get response, and 1465 ms overall
17-03-18 02:53:29.434 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.169929
17-03-18 02:53:29.434 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.16993 mm
17-03-18 02:53:29.434 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:29.444 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:53:29.444 -07 000000455 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:53:29.444 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:29.444 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37121, sync = True, waitForSettling = False)
17-03-18 02:53:29.444 -07 000000502 INF: Z Motor: Moving to -0.169929 mm, started at -0.169501 mm, distance = -0.43 um
17-03-18 02:53:29.444 -07 000000467 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:53:29.454 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:29.454 -07 000000455 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:29.454 -07 000000455 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:29.454 -07 000000455 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:53:29.454 -07 000000502 INF: FPGA: Xmit ZDACW 37121\n [Z Motor]
17-03-18 02:53:29.454 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:53:29.464 -07 000000502 INF: FPGA: 'ZDACW 37121' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:53:29.464 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:29.464 -07 000000462 INF: FPGA: Recv ZDACR 37121
17-03-18 02:53:29.474 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:29.474 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:29.474 -07 000000502 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 02:53:29.494 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:53:29.494 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:53:29.494 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:29.494 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:53:29.494 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:53:29.494 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:29.494 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:29.494 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:53:29.504 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:29.504 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:53:29.844 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:53:29.844 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:53:29.894 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:29.894 -07 000000467 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:53:29.904 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:29.904 -07 000000455 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:29.904 -07 000000455 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:53:29.904 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 02:53:30.854 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:30.854 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:53:30.864 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:30.864 -07 000000455 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:30.894 -07 000000455 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:30.894 -07 000000455 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:53:30.894 -07 000000455 INF: Y Motor: Moved to 65.7134 after 1453 ms (table move)
17-03-18 02:53:30.894 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169929 mm (DAC = 37121)
17-03-18 02:53:30.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.904 -07 000000444 INF: FPGA: Recv ZSGSRD 35738
17-03-18 02:53:30.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:53:30.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.904 -07 000000462 INF: FPGA: Recv ZSGSRD 35742
17-03-18 02:53:30.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:30.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.914 -07 000000501 INF: FPGA: Recv ZSGSRD 35746
17-03-18 02:53:30.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:30.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.924 -07 000000629 INF: FPGA: Recv ZSGSRD 35747
17-03-18 02:53:30.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:30.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.934 -07 000000467 INF: FPGA: Recv ZSGSRD 35740
17-03-18 02:53:30.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:30.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.944 -07 000000579 INF: FPGA: Recv ZSGSRD 35737
17-03-18 02:53:30.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:30.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.954 -07 000000461 INF: FPGA: Recv ZSGSRD 35737
17-03-18 02:53:30.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:30.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.964 -07 000000512 INF: FPGA: Recv ZSGSRD 35742
17-03-18 02:53:30.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:30.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.974 -07 000000591 INF: FPGA: Recv ZSGSRD 35742
17-03-18 02:53:30.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:30.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:30.984 -07 000000455 INF: FPGA: Recv ZSGSRD 35744
17-03-18 02:53:30.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:30.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:30.994 -07 000000502 INF: FPGA: Recv ZPIEZORD 31575
17-03-18 02:53:31.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:31.004 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.2 V.
17-03-18 02:53:31.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35742 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35742 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35737 (-169.0 uncal um), Max = 35747 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:53:31.004 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35742, posNoise = 5, negNoise = 5
17-03-18 02:53:31.004 -07 000000610 INF: Z Motor: After move to -0.169929, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:31.004 -07 000000610 INF: Z Motor: Settle wait time = 1455 ms, measure time = 104 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:53:31.004 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:31.054 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:53:31.054 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:31.054 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.169937542381955. ----------
17-03-18 02:53:31.054 -07 000000610 INF: Cycle	105	Tile	8	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:31.054 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36944, sync = True, waitForSettling = True)
17-03-18 02:53:31.054 -07 000000610 INF: Z Motor: Moving to -0.169119 mm, started at -0.169938 mm, distance = 0.82 um
17-03-18 02:53:31.054 -07 000000610 INF: FPGA: Xmit ZDACW 36944\n [Z Motor]
17-03-18 02:53:31.054 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:53:31.064 -07 000000610 INF: FPGA: 'ZDACW 36944' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:53:31.064 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:31.064 -07 000000590 INF: FPGA: Recv ZDACR 36944
17-03-18 02:53:31.074 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.074 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:31.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.224 -07 000000626 INF: FPGA: Recv ZSGSRD 35614
17-03-18 02:53:31.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:31.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.234 -07 000000501 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:53:31.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.244 -07 000000579 INF: FPGA: Recv ZSGSRD 35613
17-03-18 02:53:31.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.254 -07 000000561 INF: FPGA: Recv ZSGSRD 35617
17-03-18 02:53:31.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.264 -07 000000591 INF: FPGA: Recv ZSGSRD 35617
17-03-18 02:53:31.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.274 -07 000000462 INF: FPGA: Recv ZSGSRD 35615
17-03-18 02:53:31.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.284 -07 000000461 INF: FPGA: Recv ZSGSRD 35618
17-03-18 02:53:31.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.294 -07 000000444 INF: FPGA: Recv ZSGSRD 35613
17-03-18 02:53:31.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.304 -07 000000606 INF: FPGA: Recv ZSGSRD 35612
17-03-18 02:53:31.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:31.314 -07 000000618 INF: FPGA: Recv ZSGSRD 35619
17-03-18 02:53:31.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:31.324 -07 000000569 INF: FPGA: Recv ZPIEZORD 31398
17-03-18 02:53:31.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:31.334 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.3 V.
17-03-18 02:53:31.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35616 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35616 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35612 (-168.2 uncal um), Max = 35620 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:53:31.334 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35616, posNoise = 4, negNoise = 4
17-03-18 02:53:31.334 -07 000000610 INF: Z Motor: After move to -0.169119, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:31.334 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:53:31.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:31.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:31.334 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:31.334 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:31.334 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:31.334 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:31.334 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:31.334 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:31.334 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:53:31.334 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:31.334 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:53:31.334 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:31.344 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:31.344 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:31.344 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:53:31.344 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:31.354 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:53:31.354 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:53:31.354 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:53:31.354 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:53:31.364 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37121 150\n [Camera]
17-03-18 02:53:31.524 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:31.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:31.554 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:31.954 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:31.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:31.964 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:31.964 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:31.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:31.964 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:31.964 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:31.964 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:53:31.964 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:31.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:53:32.154 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37121 784
17-03-18 02:53:32.304 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:32.334 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:53:32.334 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 02:53:32.334 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:32.344 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:32.344 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:53:32.344 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:53:32.344 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:53:32.344 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:32.344 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:32.354 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:53:32.494 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:32.494 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:32.494 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:32.494 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:32.494 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:53:32.494 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:32.494 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:32.504 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:32.504 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:32.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:53:32.664 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.03576,
17-03-18 02:53:32.684 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:53:32.684 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:32.684 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37121 150' command took 2 ms to send, 1317 ms to get response, and 1327 ms overall
17-03-18 02:53:32.684 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169605
17-03-18 02:53:32.684 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16960 mm
17-03-18 02:53:32.684 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:32.694 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:53:32.694 -07 000000502 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 02:53:32.694 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37050, sync = True, waitForSettling = False)
17-03-18 02:53:32.694 -07 000000512 INF: Z Motor: Moving to -0.169604 mm, started at -0.169128 mm, distance = -0.48 um
17-03-18 02:53:32.704 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:32.704 -07 000000444 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:53:32.714 -07 000000512 INF: FPGA: Xmit ZDACW 37050\n [Z Motor]
17-03-18 02:53:32.714 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:53:32.714 -07 000000502 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:32.714 -07 000000502 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:32.714 -07 000000502 INF: Y Motor: Moving 1343 steps-19
17-03-18 02:53:32.714 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:53:32.724 -07 000000512 INF: FPGA: 'ZDACW 37050' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:53:32.724 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:32.734 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:32.734 -07 000000467 INF: FPGA: Recv ZDACR 37050
17-03-18 02:53:32.744 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:32.744 -07 000000512 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:53:32.884 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:53:32.884 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:53:32.884 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:32.884 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:53:32.884 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:53:32.884 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:32.884 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:32.884 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:53:32.894 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:32.894 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:53:33.094 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:53:33.094 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 02:53:33.144 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:33.144 -07 000000591 INF: FPGA: Recv YRDPOS 136270
17-03-18 02:53:33.154 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:33.154 -07 000000502 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:33.154 -07 000000502 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:53:33.154 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-18 02:53:34.104 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:34.104 -07 000000561 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:53:34.114 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:34.114 -07 000000502 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:34.134 -07 000000502 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:34.134 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:53:34.144 -07 000000502 INF: Y Motor: Moved to 66.5386 after 1448 ms (table move)
17-03-18 02:53:34.144 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169604 mm (DAC = 37050)
17-03-18 02:53:34.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.144 -07 000000462 INF: FPGA: Recv ZSGSRD 35695
17-03-18 02:53:34.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:34.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.154 -07 000000461 INF: FPGA: Recv ZSGSRD 35692
17-03-18 02:53:34.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.164 -07 000000626 INF: FPGA: Recv ZSGSRD 35694
17-03-18 02:53:34.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.174 -07 000000576 INF: FPGA: Recv ZSGSRD 35696
17-03-18 02:53:34.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.184 -07 000000579 INF: FPGA: Recv ZSGSRD 35693
17-03-18 02:53:34.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.194 -07 000000501 INF: FPGA: Recv ZSGSRD 35694
17-03-18 02:53:34.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.204 -07 000000455 INF: FPGA: Recv ZSGSRD 35682
17-03-18 02:53:34.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.214 -07 000000626 INF: FPGA: Recv ZSGSRD 35686
17-03-18 02:53:34.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.224 -07 000000590 INF: FPGA: Recv ZSGSRD 35693
17-03-18 02:53:34.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.234 -07 000000430 INF: FPGA: Recv ZSGSRD 35693
17-03-18 02:53:34.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:34.244 -07 000000467 INF: FPGA: Recv ZPIEZORD 31516
17-03-18 02:53:34.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.254 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.2 V.
17-03-18 02:53:34.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35692 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35693 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35682 (-168.7 uncal um), Max = 35696 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:53:34.254 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35692, posNoise = 4, negNoise = 10
17-03-18 02:53:34.254 -07 000000610 INF: Z Motor: After move to -0.169604, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:34.254 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:53:34.254 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:34.304 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 02:53:34.304 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:34.304 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.169616331774867. ----------
17-03-18 02:53:34.304 -07 000000610 INF: Cycle	105	Tile	9	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:34.304 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36873, sync = True, waitForSettling = True)
17-03-18 02:53:34.304 -07 000000610 INF: Z Motor: Moving to -0.168794 mm, started at -0.169616 mm, distance = 0.82 um
17-03-18 02:53:34.304 -07 000000610 INF: FPGA: Xmit ZDACW 36873\n [Z Motor]
17-03-18 02:53:34.304 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:53:34.314 -07 000000610 INF: FPGA: 'ZDACW 36873' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:34.314 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:34.314 -07 000000502 INF: FPGA: Recv ZDACR 36873
17-03-18 02:53:34.324 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.324 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:34.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.474 -07 000000576 INF: FPGA: Recv ZSGSRD 35568
17-03-18 02:53:34.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:34.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.484 -07 000000455 INF: FPGA: Recv ZSGSRD 35571
17-03-18 02:53:34.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.494 -07 000000462 INF: FPGA: Recv ZSGSRD 35568
17-03-18 02:53:34.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.504 -07 000000501 INF: FPGA: Recv ZSGSRD 35563
17-03-18 02:53:34.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.514 -07 000000606 INF: FPGA: Recv ZSGSRD 35562
17-03-18 02:53:34.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.524 -07 000000461 INF: FPGA: Recv ZSGSRD 35565
17-03-18 02:53:34.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.534 -07 000000430 INF: FPGA: Recv ZSGSRD 35566
17-03-18 02:53:34.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.544 -07 000000591 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:53:34.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.554 -07 000000512 INF: FPGA: Recv ZSGSRD 35566
17-03-18 02:53:34.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:34.564 -07 000000606 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:53:34.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:34.574 -07 000000461 INF: FPGA: Recv ZPIEZORD 31347
17-03-18 02:53:34.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:34.584 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.626 V. Piezo Error = -9.3 V.
17-03-18 02:53:34.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35566 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35566 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35562 (-167.9 uncal um), Max = 35571 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:53:34.584 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35566, posNoise = 5, negNoise = 4
17-03-18 02:53:34.584 -07 000000610 INF: Z Motor: After move to -0.168794, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:34.584 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:53:34.584 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:34.584 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:34.584 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:34.584 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:34.584 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:34.584 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:34.584 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:34.584 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:34.584 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:34.584 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:34.584 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:34.584 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:34.594 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:34.594 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:34.594 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:34.594 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:34.604 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:53:34.604 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:53:34.604 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:53:34.604 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:53:34.604 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37050 150\n [Camera]
17-03-18 02:53:34.804 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:35.204 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:35.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:35.204 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:35.214 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:35.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:35.214 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:35.214 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:35.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:53:35.214 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:35.214 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:53:35.404 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37050 786
17-03-18 02:53:35.544 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:35.584 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 367 ms.
17-03-18 02:53:35.584 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 02:53:35.584 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:35.584 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:53:35.584 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:53:35.584 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:35.594 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:35.594 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:35.594 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:53:35.594 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:53:35.744 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:35.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:35.744 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:35.744 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:35.744 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:53:35.744 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:35.744 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:35.744 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:35.744 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:35.744 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1112907760, 0x0, 418435064) start.
17-03-18 02:53:35.934 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:53:35.934 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:35.934 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37050 150' command took 2 ms to send, 1314 ms to get response, and 1325 ms overall
17-03-18 02:53:35.934 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:53:35.934 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168806881045005. ------
17-03-18 02:53:35.934 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17564 mm
17-03-18 02:53:35.934 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:35.934 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:35.944 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38368, sync = True, waitForSettling = False)
17-03-18 02:53:35.944 -07 000000512 INF: Z Motor: Moving to -0.175637 mm, started at -0.168807 mm, distance = -6.83 um
17-03-18 02:53:35.944 -07 000000512 INF: FPGA: Xmit ZDACW 38368\n [Z Motor]
17-03-18 02:53:35.944 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:35.944 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:53:35.944 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:53:35.944 -07 000000467 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 02:53:35.944 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:53:35.954 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:35.954 -07 000000512 INF: FPGA: 'ZDACW 38368' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:53:35.954 -07 000000462 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:53:35.964 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:53:35.964 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:53:35.964 -07 000000467 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:35.964 -07 000000467 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:35.964 -07 000000467 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:53:35.974 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:35.974 -07 000000561 INF: FPGA: Recv ZDACR 38368
17-03-18 02:53:35.984 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:35.984 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:53:35.984 -07 000000512 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:53:36.124 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:53:36.124 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:53:36.124 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:36.124 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1112907760, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:53:36.124 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:53:36.124 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:36.134 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:53:36.134 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:53:36.134 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:36.144 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:53:36.164 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:53:36.164 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 02:53:36.354 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:53:36.354 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:53:36.404 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:36.404 -07 000000569 INF: FPGA: Recv YRDPOS 137976
17-03-18 02:53:36.414 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:53:36.414 -07 000000467 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:36.414 -07 000000467 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 02:53:36.414 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec
17-03-18 02:53:36.524 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:36.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:37.364 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:37.364 -07 000000424 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:53:37.374 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:37.374 -07 000000467 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:37.394 -07 000000467 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:37.394 -07 000000467 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:53:37.394 -07 000000467 INF: Y Motor: Moved to 67.3716 after 1455 ms (table move)
17-03-18 02:53:37.404 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175637 mm (DAC = 38368)
17-03-18 02:53:37.404 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.404 -07 000000591 INF: FPGA: Recv ZSGSRD 36629
17-03-18 02:53:37.414 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:53:37.414 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.414 -07 000000626 INF: FPGA: Recv ZSGSRD 36632
17-03-18 02:53:37.424 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.424 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.424 -07 000000444 INF: FPGA: Recv ZSGSRD 36632
17-03-18 02:53:37.434 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.434 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.434 -07 000000576 INF: FPGA: Recv ZSGSRD 36636
17-03-18 02:53:37.444 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.444 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.444 -07 000000561 INF: FPGA: Recv ZSGSRD 36632
17-03-18 02:53:37.454 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.454 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.454 -07 000000569 INF: FPGA: Recv ZSGSRD 36630
17-03-18 02:53:37.464 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.464 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.464 -07 000000462 INF: FPGA: Recv ZSGSRD 36632
17-03-18 02:53:37.474 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.474 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.474 -07 000000626 INF: FPGA: Recv ZSGSRD 36626
17-03-18 02:53:37.484 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.484 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.484 -07 000000606 INF: FPGA: Recv ZSGSRD 36631
17-03-18 02:53:37.494 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.494 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:37.494 -07 000000618 INF: FPGA: Recv ZSGSRD 36628
17-03-18 02:53:37.504 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.504 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:37.504 -07 000000561 INF: FPGA: Recv ZPIEZORD 32768
17-03-18 02:53:37.514 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:37.514 -07 000000501 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.855 V. Piezo Error = -8.5 V.
17-03-18 02:53:37.514 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36631 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36632 (-174.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36626 (-174.7 uncal um), Max = 36636 (-174.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:53:37.514 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36631, posNoise = 5, negNoise = 5
17-03-18 02:53:37.514 -07 000000501 INF: Z Motor: After move to -0.175637, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:37.514 -07 000000501 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms
17-03-18 02:53:37.514 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:37.564 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 02:53:37.564 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:37.564 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:37.564 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:37.564 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:37.564 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:37.564 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:53:37.564 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:37.564 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:37.564 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:53:37.574 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:37.574 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:53:37.584 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:53:37.584 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:53:37.594 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:53:37.634 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:53:37.934 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:53:37.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:53:37.934 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:53:37.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:53:37.974 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:53:37.974 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 02:53:37.974 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 388 ms overall
17-03-18 02:53:38.024 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.020806,
17-03-18 02:53:38.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:53:38.064 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:38.064 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:53:38.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:53:38.074 -07 000000444 INF: Autofocus start
17-03-18 02:53:38.074 -07 000000444 INF: MeasureProfile start
17-03-18 02:53:38.074 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:38.074 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:38.084 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:38.084 -07 000000455 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:53:38.084 -07 000000444 INF: MeasureProfile done
17-03-18 02:53:38.084 -07 000000444 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:53:38.084 -07 000000444 INF: Autofocus finished
17-03-18 02:53:38.284 -07 000000606 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:53:38.284 -07 000000455 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:53:38.284 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175648666975981. ----------
17-03-18 02:53:38.284 -07 000000610 INF: Cycle	105	Tile	10	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:38.294 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36883, sync = True, waitForSettling = True)
17-03-18 02:53:38.294 -07 000000610 INF: Z Motor: Moving to -0.168840 mm, started at -0.175649 mm, distance = 6.81 um
17-03-18 02:53:38.294 -07 000000610 INF: FPGA: Xmit ZDACW 36883\n [Z Motor]
17-03-18 02:53:38.294 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:53:38.304 -07 000000610 INF: FPGA: 'ZDACW 36883' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:53:38.304 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:38.304 -07 000000591 INF: FPGA: Recv ZDACR 36883
17-03-18 02:53:38.314 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.314 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:38.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.464 -07 000000462 INF: FPGA: Recv ZSGSRD 35572
17-03-18 02:53:38.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.474 -07 000000629 INF: FPGA: Recv ZSGSRD 35577
17-03-18 02:53:38.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.484 -07 000000590 INF: FPGA: Recv ZSGSRD 35572
17-03-18 02:53:38.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.494 -07 000000467 INF: FPGA: Recv ZSGSRD 35570
17-03-18 02:53:38.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.504 -07 000000501 INF: FPGA: Recv ZSGSRD 35572
17-03-18 02:53:38.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.514 -07 000000618 INF: FPGA: Recv ZSGSRD 35576
17-03-18 02:53:38.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.524 -07 000000444 INF: FPGA: Recv ZSGSRD 35567
17-03-18 02:53:38.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.534 -07 000000502 INF: FPGA: Recv ZSGSRD 35570
17-03-18 02:53:38.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.544 -07 000000444 INF: FPGA: Recv ZSGSRD 35574
17-03-18 02:53:38.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:38.554 -07 000000591 INF: FPGA: Recv ZSGSRD 35574
17-03-18 02:53:38.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:38.564 -07 000000512 INF: FPGA: Recv ZPIEZORD 31348
17-03-18 02:53:38.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:38.574 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.628 V. Piezo Error = -9.3 V.
17-03-18 02:53:38.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35572 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35572 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35567 (-167.9 uncal um), Max = 35577 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:53:38.574 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35572, posNoise = 5, negNoise = 5
17-03-18 02:53:38.574 -07 000000610 INF: Z Motor: After move to -0.168840, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:38.574 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:53:38.574 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:38.574 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:38.574 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:38.574 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:38.574 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:38.574 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:38.574 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:38.574 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:38.574 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:53:38.574 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:38.574 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:38.574 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:38.584 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:38.584 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:38.584 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:38.584 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:38.594 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:53:38.594 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:53:38.594 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:53:38.594 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:53:38.594 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 37060 150\n [Camera]
17-03-18 02:53:38.804 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 02:53:39.204 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:39.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:39.204 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:39.204 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:39.204 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148330024, 0x0, 391868352) start.
17-03-18 02:53:39.204 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:39.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:39.204 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:39.204 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:39.204 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-18 02:53:39.394 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37060 784
17-03-18 02:53:39.544 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:39.574 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148330024, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:53:39.574 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:53:39.574 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:39.584 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:53:39.584 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:53:39.584 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:39.584 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:39.584 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:53:39.584 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:39.594 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:53:39.734 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:39.734 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:39.734 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:39.734 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:39.734 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2637860568, 0x0, 391868352) start.
17-03-18 02:53:39.734 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:39.734 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:39.734 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:39.734 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:39.734 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:53:39.924 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:53:39.924 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:39.924 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 37060 150' command took 2 ms to send, 1315 ms to get response, and 1325 ms overall
17-03-18 02:53:39.924 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169140
17-03-18 02:53:39.924 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16914 mm
17-03-18 02:53:39.924 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:39.934 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:53:39.934 -07 000000444 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:53:39.934 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:39.934 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 36949, sync = True, waitForSettling = False)
17-03-18 02:53:39.934 -07 000000424 INF: Z Motor: Moving to -0.169142 mm, started at -0.168845 mm, distance = -0.30 um
17-03-18 02:53:39.934 -07 000000576 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:53:39.944 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:39.944 -07 000000444 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:39.944 -07 000000444 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:39.944 -07 000000444 INF: Y Motor: Moving 1346 steps-24
17-03-18 02:53:39.944 -07 000000424 INF: FPGA: Xmit ZDACW 36949\n [Z Motor]
17-03-18 02:53:39.944 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:53:39.954 -07 000000424 INF: FPGA: 'ZDACW 36949' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:53:39.954 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:39.954 -07 000000606 INF: FPGA: Recv ZDACR 36949
17-03-18 02:53:39.964 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:39.964 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:39.964 -07 000000424 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 02:53:40.114 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:53:40.234 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2637860568, 0x0, 391868352) end. Duration was 496 ms.
17-03-18 02:53:40.234 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-18 02:53:40.234 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:40.234 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 493 ms.
17-03-18 02:53:40.234 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:40.234 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:40.234 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:53:40.234 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-18 02:53:40.244 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-18 02:53:40.334 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:53:40.334 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:53:40.384 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:40.384 -07 000000606 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:53:40.394 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:53:40.394 -07 000000444 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:40.394 -07 000000444 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:53:40.394 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.113 mm/sec
17-03-18 02:53:41.344 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:41.344 -07 000000579 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:53:41.354 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.354 -07 000000444 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:41.374 -07 000000444 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:41.374 -07 000000444 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:53:41.374 -07 000000444 INF: Y Motor: Moved to 68.2046 after 1448 ms (table move)
17-03-18 02:53:41.384 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169142 mm (DAC = 36949)
17-03-18 02:53:41.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.384 -07 000000626 INF: FPGA: Recv ZSGSRD 35619
17-03-18 02:53:41.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:53:41.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.394 -07 000000569 INF: FPGA: Recv ZSGSRD 35626
17-03-18 02:53:41.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.404 -07 000000618 INF: FPGA: Recv ZSGSRD 35617
17-03-18 02:53:41.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.414 -07 000000626 INF: FPGA: Recv ZSGSRD 35620
17-03-18 02:53:41.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.424 -07 000000467 INF: FPGA: Recv ZSGSRD 35618
17-03-18 02:53:41.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.434 -07 000000502 INF: FPGA: Recv ZSGSRD 35612
17-03-18 02:53:41.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.444 -07 000000629 INF: FPGA: Recv ZSGSRD 35617
17-03-18 02:53:41.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.454 -07 000000424 INF: FPGA: Recv ZSGSRD 35623
17-03-18 02:53:41.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.464 -07 000000629 INF: FPGA: Recv ZSGSRD 35622
17-03-18 02:53:41.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.474 -07 000000455 INF: FPGA: Recv ZSGSRD 35622
17-03-18 02:53:41.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:41.484 -07 000000626 INF: FPGA: Recv ZPIEZORD 31444
17-03-18 02:53:41.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.494 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.2 V.
17-03-18 02:53:41.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35620 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35620 (-168.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35612 (-168.2 uncal um), Max = 35626 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:53:41.494 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35620, posNoise = 6, negNoise = 8
17-03-18 02:53:41.494 -07 000000610 INF: Z Motor: After move to -0.169142, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:41.494 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 108 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:53:41.494 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:41.524 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:41.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:41.544 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:53:41.544 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:41.544 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.16915378850066. ----------
17-03-18 02:53:41.544 -07 000000610 INF: Cycle	105	Tile	11	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:41.544 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36772, sync = True, waitForSettling = True)
17-03-18 02:53:41.544 -07 000000610 INF: Z Motor: Moving to -0.168331 mm, started at -0.169154 mm, distance = 0.82 um
17-03-18 02:53:41.544 -07 000000610 INF: FPGA: Xmit ZDACW 36772\n [Z Motor]
17-03-18 02:53:41.544 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:53:41.554 -07 000000610 INF: FPGA: 'ZDACW 36772' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:41.554 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:41.554 -07 000000467 INF: FPGA: Recv ZDACR 36772
17-03-18 02:53:41.564 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.564 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:41.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.714 -07 000000502 INF: FPGA: Recv ZSGSRD 35498
17-03-18 02:53:41.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.724 -07 000000618 INF: FPGA: Recv ZSGSRD 35497
17-03-18 02:53:41.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.734 -07 000000455 INF: FPGA: Recv ZSGSRD 35493
17-03-18 02:53:41.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.744 -07 000000444 INF: FPGA: Recv ZSGSRD 35489
17-03-18 02:53:41.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.754 -07 000000626 INF: FPGA: Recv ZSGSRD 35492
17-03-18 02:53:41.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.764 -07 000000455 INF: FPGA: Recv ZSGSRD 35490
17-03-18 02:53:41.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.774 -07 000000590 INF: FPGA: Recv ZSGSRD 35495
17-03-18 02:53:41.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.784 -07 000000462 INF: FPGA: Recv ZSGSRD 35500
17-03-18 02:53:41.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.794 -07 000000424 INF: FPGA: Recv ZSGSRD 35493
17-03-18 02:53:41.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:41.804 -07 000000591 INF: FPGA: Recv ZSGSRD 35492
17-03-18 02:53:41.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:41.814 -07 000000467 INF: FPGA: Recv ZPIEZORD 31245
17-03-18 02:53:41.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:41.824 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.611 V. Piezo Error = -9.4 V.
17-03-18 02:53:41.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35494 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35493 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35489 (-167.4 uncal um), Max = 35500 (-167.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:53:41.824 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35494, posNoise = 6, negNoise = 5
17-03-18 02:53:41.824 -07 000000610 INF: Z Motor: After move to -0.168331, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:41.824 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:53:41.824 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:41.824 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:41.824 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:41.824 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:41.824 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:41.824 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:41.824 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:41.824 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:41.824 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:53:41.824 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:41.824 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:53:41.824 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:41.824 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:41.824 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:41.824 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:41.834 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:41.834 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:53:41.834 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:53:41.844 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:53:41.844 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:53:41.844 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36949 150\n [Camera]
17-03-18 02:53:42.044 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:42.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:42.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:42.444 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:42.444 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:42.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:42.444 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:42.444 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:42.444 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:53:42.454 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:42.454 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:53:42.634 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36949 784
17-03-18 02:53:42.784 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:42.834 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:53:42.834 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:53:42.834 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:42.834 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:42.834 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:53:42.834 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:53:42.834 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:53:42.834 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:42.834 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:42.844 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:53:42.974 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:42.974 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:42.974 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:42.984 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:42.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:42.984 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:42.984 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:53:42.984 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:42.994 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:42.994 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:53:43.164 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:53:43.164 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:43.164 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36949 150' command took 2 ms to send, 1319 ms to get response, and 1325 ms overall
17-03-18 02:53:43.174 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168989
17-03-18 02:53:43.174 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16899 mm
17-03-18 02:53:43.174 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:43.174 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:53:43.174 -07 000000462 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 02:53:43.174 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 36916, sync = True, waitForSettling = False)
17-03-18 02:53:43.174 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:43.174 -07 000000467 INF: Z Motor: Moving to -0.168991 mm, started at -0.168344 mm, distance = -0.65 um
17-03-18 02:53:43.174 -07 000000579 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:53:43.184 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:53:43.184 -07 000000462 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:43.184 -07 000000467 INF: FPGA: Xmit ZDACW 36916\n [Z Motor]
17-03-18 02:53:43.184 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:53:43.184 -07 000000462 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:43.184 -07 000000462 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:53:43.194 -07 000000467 INF: FPGA: 'ZDACW 36916' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:53:43.194 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:43.204 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:43.204 -07 000000502 INF: FPGA: Recv ZDACR 36916
17-03-18 02:53:43.214 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:43.214 -07 000000467 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 02:53:43.364 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:53:43.364 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:53:43.364 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:43.364 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:53:43.364 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:53:43.364 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:43.364 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:53:43.364 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:43.364 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:53:43.374 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:53:43.384 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.012614,
17-03-18 02:53:43.564 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:53:43.564 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:53:43.614 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:43.614 -07 000000461 INF: FPGA: Recv YRDPOS 141366
17-03-18 02:53:43.624 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:43.624 -07 000000462 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:43.624 -07 000000462 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:53:43.624 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.182 mm/sec
17-03-18 02:53:44.574 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:44.574 -07 000000569 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:53:44.584 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:44.584 -07 000000462 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:44.604 -07 000000462 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:44.604 -07 000000462 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:53:44.604 -07 000000462 INF: Y Motor: Moved to 69.0269 after 1434 ms (table move)
17-03-18 02:53:44.614 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168991 mm (DAC = 36916)
17-03-18 02:53:44.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.614 -07 000000618 INF: FPGA: Recv ZSGSRD 35594
17-03-18 02:53:44.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:53:44.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.624 -07 000000512 INF: FPGA: Recv ZSGSRD 35597
17-03-18 02:53:44.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.634 -07 000000462 INF: FPGA: Recv ZSGSRD 35598
17-03-18 02:53:44.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.644 -07 000000461 INF: FPGA: Recv ZSGSRD 35594
17-03-18 02:53:44.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.654 -07 000000569 INF: FPGA: Recv ZSGSRD 35596
17-03-18 02:53:44.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.664 -07 000000618 INF: FPGA: Recv ZSGSRD 35592
17-03-18 02:53:44.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.674 -07 000000579 INF: FPGA: Recv ZSGSRD 35592
17-03-18 02:53:44.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.684 -07 000000467 INF: FPGA: Recv ZSGSRD 35594
17-03-18 02:53:44.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.694 -07 000000561 INF: FPGA: Recv ZSGSRD 35602
17-03-18 02:53:44.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.704 -07 000000591 INF: FPGA: Recv ZSGSRD 35598
17-03-18 02:53:44.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:44.714 -07 000000444 INF: FPGA: Recv ZPIEZORD 31407
17-03-18 02:53:44.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.724 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.2 V.
17-03-18 02:53:44.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35596 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35595 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35592 (-168.1 uncal um), Max = 35602 (-168.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:53:44.724 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35596, posNoise = 6, negNoise = 4
17-03-18 02:53:44.724 -07 000000610 INF: Z Motor: After move to -0.168991, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:44.724 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 108 ms (allowed 150 ms), total time = 1546 ms
17-03-18 02:53:44.724 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:44.774 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-18 02:53:44.774 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:44.774 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.168999607409258. ----------
17-03-18 02:53:44.774 -07 000000610 INF: Cycle	105	Tile	12	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:44.774 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36739, sync = True, waitForSettling = True)
17-03-18 02:53:44.774 -07 000000610 INF: Z Motor: Moving to -0.168180 mm, started at -0.169000 mm, distance = 0.82 um
17-03-18 02:53:44.774 -07 000000610 INF: FPGA: Xmit ZDACW 36739\n [Z Motor]
17-03-18 02:53:44.774 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:53:44.784 -07 000000610 INF: FPGA: 'ZDACW 36739' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:53:44.784 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:44.784 -07 000000444 INF: FPGA: Recv ZDACR 36739
17-03-18 02:53:44.794 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.794 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:44.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.944 -07 000000430 INF: FPGA: Recv ZSGSRD 35467
17-03-18 02:53:44.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:44.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.954 -07 000000569 INF: FPGA: Recv ZSGSRD 35468
17-03-18 02:53:44.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:44.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.964 -07 000000455 INF: FPGA: Recv ZSGSRD 35465
17-03-18 02:53:44.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.974 -07 000000501 INF: FPGA: Recv ZSGSRD 35472
17-03-18 02:53:44.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.984 -07 000000591 INF: FPGA: Recv ZSGSRD 35468
17-03-18 02:53:44.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:44.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:44.994 -07 000000606 INF: FPGA: Recv ZSGSRD 35467
17-03-18 02:53:45.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:45.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:45.004 -07 000000576 INF: FPGA: Recv ZSGSRD 35473
17-03-18 02:53:45.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:45.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:45.014 -07 000000455 INF: FPGA: Recv ZSGSRD 35467
17-03-18 02:53:45.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:45.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:45.024 -07 000000579 INF: FPGA: Recv ZSGSRD 35477
17-03-18 02:53:45.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:45.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:45.034 -07 000000455 INF: FPGA: Recv ZSGSRD 35467
17-03-18 02:53:45.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:45.044 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:45.044 -07 000000606 INF: FPGA: Recv ZPIEZORD 31206
17-03-18 02:53:45.054 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:45.054 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.4 V.
17-03-18 02:53:45.054 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35469 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35468 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35465 (-167.3 uncal um), Max = 35477 (-167.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:53:45.054 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35469, posNoise = 8, negNoise = 4
17-03-18 02:53:45.054 -07 000000610 INF: Z Motor: After move to -0.168180, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:45.054 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:53:45.054 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:45.054 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:45.054 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:45.054 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:45.054 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:45.054 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:45.054 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:45.054 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:45.054 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:45.054 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:45.054 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:45.054 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:45.054 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:53:45.054 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:45.064 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:45.064 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:45.074 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:53:45.074 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:53:45.074 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:53:45.074 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:53:45.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36916 150\n [Camera]
17-03-18 02:53:45.274 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:45.674 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:45.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:45.674 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:45.684 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:45.684 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:45.684 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:45.794 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:45.794 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:53:45.794 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:45.794 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:53:45.874 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36916 784
17-03-18 02:53:46.024 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:46.174 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:53:46.174 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:53:46.174 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:46.174 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:53:46.174 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:53:46.174 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:46.174 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:46.174 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:46.174 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 498 ms.
17-03-18 02:53:46.184 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 02:53:46.214 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:46.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:46.214 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:46.214 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:46.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:46.214 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:46.224 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:46.224 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:53:46.224 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:46.224 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:53:46.404 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:53:46.404 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:46.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36916 150' command took 2 ms to send, 1315 ms to get response, and 1325 ms overall
17-03-18 02:53:46.404 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168517
17-03-18 02:53:46.404 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16852 mm
17-03-18 02:53:46.404 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:46.404 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:53:46.404 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 36813, sync = True, waitForSettling = False)
17-03-18 02:53:46.404 -07 000000444 INF: Z Motor: Moving to -0.168519 mm, started at -0.168184 mm, distance = -0.34 um
17-03-18 02:53:46.414 -07 000000444 INF: FPGA: Xmit ZDACW 36813\n [Z Motor]
17-03-18 02:53:46.414 -07 000000569 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 02:53:46.414 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:53:46.424 -07 000000444 INF: FPGA: 'ZDACW 36813' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:46.424 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:46.424 -07 000000629 INF: FPGA: Recv ZDACR 36813
17-03-18 02:53:46.434 -07 000000444 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:46.434 -07 000000444 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 02:53:46.434 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:46.434 -07 000000455 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:53:46.444 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:53:46.444 -07 000000569 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:46.444 -07 000000569 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:46.444 -07 000000569 INF: Y Motor: Moving 1353 steps-33
17-03-18 02:53:46.444 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:46.524 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:46.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:46.594 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:53:46.594 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:53:46.594 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:46.594 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:53:46.594 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:53:46.594 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:46.604 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:46.604 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:53:46.604 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:46.614 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:53:46.814 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:53:46.814 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 02:53:46.884 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:46.884 -07 000000430 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:53:46.894 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:46.894 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:46.894 -07 000000569 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:53:46.894 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.846 mm, average velocity = 2.232 mm/sec
17-03-18 02:53:47.844 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:47.844 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:53:47.854 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:47.854 -07 000000569 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:47.874 -07 000000569 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:47.874 -07 000000569 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:53:47.874 -07 000000569 INF: Y Motor: Moved to 69.8628 after 1469 ms (table move)
17-03-18 02:53:47.884 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168519 mm (DAC = 36813)
17-03-18 02:53:47.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.884 -07 000000629 INF: FPGA: Recv ZSGSRD 35525
17-03-18 02:53:47.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:47.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.894 -07 000000462 INF: FPGA: Recv ZSGSRD 35521
17-03-18 02:53:47.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:47.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.904 -07 000000576 INF: FPGA: Recv ZSGSRD 35522
17-03-18 02:53:47.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:47.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.914 -07 000000455 INF: FPGA: Recv ZSGSRD 35523
17-03-18 02:53:47.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:47.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.924 -07 000000444 INF: FPGA: Recv ZSGSRD 35521
17-03-18 02:53:47.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:47.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.934 -07 000000461 INF: FPGA: Recv ZSGSRD 35521
17-03-18 02:53:47.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:47.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.944 -07 000000591 INF: FPGA: Recv ZSGSRD 35525
17-03-18 02:53:47.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:47.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.964 -07 000000444 INF: FPGA: Recv ZSGSRD 35528
17-03-18 02:53:47.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:47.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.974 -07 000000626 INF: FPGA: Recv ZSGSRD 35518
17-03-18 02:53:47.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:47.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:47.984 -07 000000606 INF: FPGA: Recv ZSGSRD 35521
17-03-18 02:53:47.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:47.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:47.994 -07 000000502 INF: FPGA: Recv ZPIEZORD 31333
17-03-18 02:53:48.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:48.004 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.2 V.
17-03-18 02:53:48.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35522 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35522 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35518 (-167.6 uncal um), Max = 35528 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:53:48.004 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35522, posNoise = 6, negNoise = 4
17-03-18 02:53:48.004 -07 000000610 INF: Z Motor: After move to -0.168519, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:48.004 -07 000000610 INF: Z Motor: Settle wait time = 1471 ms, measure time = 119 ms (allowed 150 ms), total time = 1590 ms
17-03-18 02:53:48.004 -07 000000610 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:48.044 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-18 02:53:48.044 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:48.044 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.168524215710768. ----------
17-03-18 02:53:48.044 -07 000000610 INF: Cycle	105	Tile	13	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:48.044 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36636, sync = True, waitForSettling = True)
17-03-18 02:53:48.044 -07 000000610 INF: Z Motor: Moving to -0.167709 mm, started at -0.168524 mm, distance = 0.82 um
17-03-18 02:53:48.044 -07 000000610 INF: FPGA: Xmit ZDACW 36636\n [Z Motor]
17-03-18 02:53:48.044 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:53:48.054 -07 000000610 INF: FPGA: 'ZDACW 36636' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:53:48.054 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:48.054 -07 000000591 INF: FPGA: Recv ZDACR 36636
17-03-18 02:53:48.064 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:48.064 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:48.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.214 -07 000000502 INF: FPGA: Recv ZSGSRD 35397
17-03-18 02:53:48.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:48.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.224 -07 000000569 INF: FPGA: Recv ZSGSRD 35398
17-03-18 02:53:48.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:48.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.234 -07 000000512 INF: FPGA: Recv ZSGSRD 35396
17-03-18 02:53:48.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:48.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.244 -07 000000576 INF: FPGA: Recv ZSGSRD 35390
17-03-18 02:53:48.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:48.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.254 -07 000000629 INF: FPGA: Recv ZSGSRD 35401
17-03-18 02:53:48.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:48.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.274 -07 000000579 INF: FPGA: Recv ZSGSRD 35399
17-03-18 02:53:48.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:48.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.284 -07 000000430 INF: FPGA: Recv ZSGSRD 35402
17-03-18 02:53:48.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:48.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.304 -07 000000579 INF: FPGA: Recv ZSGSRD 35396
17-03-18 02:53:48.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:48.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.314 -07 000000444 INF: FPGA: Recv ZSGSRD 35392
17-03-18 02:53:48.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:48.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:48.334 -07 000000606 INF: FPGA: Recv ZSGSRD 35400
17-03-18 02:53:48.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:48.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:48.354 -07 000000591 INF: FPGA: Recv ZPIEZORD 31175
17-03-18 02:53:48.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:53:48.364 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.590 V. Piezo Error = -9.3 V.
17-03-18 02:53:48.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35397 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35398 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35390 (-166.8 uncal um), Max = 35402 (-166.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:53:48.364 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35397, posNoise = 5, negNoise = 7
17-03-18 02:53:48.364 -07 000000610 INF: Z Motor: After move to -0.167709, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:48.364 -07 000000610 INF: Z Motor: MoveAbsStepped took 315 ms)
17-03-18 02:53:48.364 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:48.364 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:48.364 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:48.374 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:48.374 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:48.374 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:48.374 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:48.374 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:48.374 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:48.374 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:48.374 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:48.374 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:48.374 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:53:48.374 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:48.374 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:48.374 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:48.384 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:53:48.384 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:53:48.384 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:53:48.384 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:53:48.384 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36813 150\n [Camera]
17-03-18 02:53:48.584 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:48.744 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.986717,
17-03-18 02:53:48.984 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:48.984 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:48.984 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:48.984 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:48.984 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:48.994 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:48.994 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:53:48.994 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:48.994 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:48.994 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:53:49.174 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36813 784
17-03-18 02:53:49.324 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:49.364 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:53:49.364 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 02:53:49.364 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:49.364 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:53:49.364 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:53:49.364 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:49.364 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:49.364 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:53:49.374 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:49.374 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:53:49.524 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:49.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:49.524 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:49.524 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:49.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:49.524 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:49.634 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:49.634 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:53:49.634 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:49.634 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:53:49.714 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:53:49.714 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:49.714 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36813 150' command took 2 ms to send, 1322 ms to get response, and 1326 ms overall
17-03-18 02:53:49.714 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:53:49.714 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167721189193048. ------
17-03-18 02:53:49.714 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:49.714 -07 000000590 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17356 mm
17-03-18 02:53:49.714 -07 000000590 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:49.724 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:49.724 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:53:49.724 -07 000000576 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 02:53:49.724 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:49.724 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:53:49.724 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37914, sync = True, waitForSettling = False)
17-03-18 02:53:49.724 -07 000000424 INF: Z Motor: Moving to -0.173559 mm, started at -0.167721 mm, distance = -5.84 um
17-03-18 02:53:49.724 -07 000000467 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:53:49.734 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:53:49.734 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:49.734 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:49.734 -07 000000576 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:49.734 -07 000000576 INF: Y Motor: Moving 1344 steps-20
17-03-18 02:53:49.744 -07 000000424 INF: FPGA: Xmit ZDACW 37914\n [Z Motor]
17-03-18 02:53:49.744 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:53:49.754 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:49.754 -07 000000424 INF: FPGA: 'ZDACW 37914' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:53:49.764 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:49.764 -07 000000591 INF: FPGA: Recv ZDACR 37914
17-03-18 02:53:49.774 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:53:49.774 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-18 02:53:49.934 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:53:49.934 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 02:53:50.014 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:53:50.014 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:53:50.014 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:50.014 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:53:50.014 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:53:50.014 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:50.024 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:53:50.024 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-18 02:53:50.024 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:53:50.034 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 02:53:50.124 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:53:50.124 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:53:50.174 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:50.174 -07 000000444 INF: FPGA: Recv YRDPOS 144768
17-03-18 02:53:50.184 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:53:50.184 -07 000000576 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:50.184 -07 000000576 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:53:50.184 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-18 02:53:51.134 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:51.134 -07 000000444 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:53:51.144 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:51.144 -07 000000576 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:51.164 -07 000000576 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:51.164 -07 000000576 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:53:51.164 -07 000000576 INF: Y Motor: Moved to 70.6880 after 1447 ms (table move)
17-03-18 02:53:51.174 -07 000000590 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173559 mm (DAC = 37914)
17-03-18 02:53:51.174 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.174 -07 000000579 INF: FPGA: Recv ZSGSRD 36305
17-03-18 02:53:51.184 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:51.184 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.184 -07 000000444 INF: FPGA: Recv ZSGSRD 36308
17-03-18 02:53:51.194 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.194 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.194 -07 000000502 INF: FPGA: Recv ZSGSRD 36313
17-03-18 02:53:51.204 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.204 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.204 -07 000000561 INF: FPGA: Recv ZSGSRD 36307
17-03-18 02:53:51.214 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.214 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.214 -07 000000606 INF: FPGA: Recv ZSGSRD 36309
17-03-18 02:53:51.224 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.224 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.224 -07 000000569 INF: FPGA: Recv ZSGSRD 36303
17-03-18 02:53:51.234 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.234 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.234 -07 000000467 INF: FPGA: Recv ZSGSRD 36309
17-03-18 02:53:51.244 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.244 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.244 -07 000000591 INF: FPGA: Recv ZSGSRD 36303
17-03-18 02:53:51.254 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.254 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.254 -07 000000512 INF: FPGA: Recv ZSGSRD 36306
17-03-18 02:53:51.264 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.264 -07 000000590 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:51.264 -07 000000576 INF: FPGA: Recv ZSGSRD 36310
17-03-18 02:53:51.274 -07 000000590 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.274 -07 000000590 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:51.274 -07 000000618 INF: FPGA: Recv ZPIEZORD 32404
17-03-18 02:53:51.284 -07 000000590 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:51.284 -07 000000590 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.785 V. Piezo Error = -8.6 V.
17-03-18 02:53:51.284 -07 000000590 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36307 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36308 (-172.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36303 (-172.7 uncal um), Max = 36313 (-172.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:53:51.284 -07 000000590 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36307, posNoise = 6, negNoise = 4
17-03-18 02:53:51.284 -07 000000590 INF: Z Motor: After move to -0.173559, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:51.284 -07 000000590 INF: Z Motor: Settle wait time = 1449 ms, measure time = 109 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:53:51.284 -07 000000590 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:51.334 -07 000000590 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:53:51.334 -07 000000590 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:51.334 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:51.334 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:51.334 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:51.334 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:51.334 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:53:51.334 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:51.334 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:51.334 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:53:51.344 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:51.344 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:53:51.354 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:53:51.354 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:53:51.354 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:53:51.404 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-18 02:53:51.524 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:51.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:51.704 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 343
17-03-18 02:53:51.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343
17-03-18 02:53:51.704 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:53:51.704 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 02:53:51.744 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:53:51.744 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 02:53:51.744 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 02:53:51.834 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:53:51.834 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:51.834 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:53:51.834 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:53:51.944 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:53:51.944 -07 000000512 INF: Autofocus start
17-03-18 02:53:51.944 -07 000000512 INF: MeasureProfile start
17-03-18 02:53:51.944 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:53:51.954 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:53:51.954 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:53:51.954 -07 000000512 INF: MeasureProfile done
17-03-18 02:53:51.954 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:53:51.954 -07 000000512 INF: Autofocus finished
17-03-18 02:53:52.154 -07 000000629 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:53:52.154 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:53:52.154 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.17356722224205. ----------
17-03-18 02:53:52.154 -07 000000610 INF: Cycle	105	Tile	14	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:52.164 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36447, sync = True, waitForSettling = True)
17-03-18 02:53:52.164 -07 000000610 INF: Z Motor: Moving to -0.166844 mm, started at -0.173567 mm, distance = 6.72 um
17-03-18 02:53:52.164 -07 000000610 INF: FPGA: Xmit ZDACW 36447\n [Z Motor]
17-03-18 02:53:52.164 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:53:52.174 -07 000000610 INF: FPGA: 'ZDACW 36447' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.174 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:52.174 -07 000000629 INF: FPGA: Recv ZDACR 36447
17-03-18 02:53:52.184 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.184 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:52.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.334 -07 000000444 INF: FPGA: Recv ZSGSRD 35261
17-03-18 02:53:52.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.344 -07 000000579 INF: FPGA: Recv ZSGSRD 35264
17-03-18 02:53:52.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.354 -07 000000502 INF: FPGA: Recv ZSGSRD 35257
17-03-18 02:53:52.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.364 -07 000000591 INF: FPGA: Recv ZSGSRD 35260
17-03-18 02:53:52.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.374 -07 000000626 INF: FPGA: Recv ZSGSRD 35266
17-03-18 02:53:52.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.384 -07 000000424 INF: FPGA: Recv ZSGSRD 35265
17-03-18 02:53:52.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.394 -07 000000569 INF: FPGA: Recv ZSGSRD 35258
17-03-18 02:53:52.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.404 -07 000000467 INF: FPGA: Recv ZSGSRD 35258
17-03-18 02:53:52.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.414 -07 000000444 INF: FPGA: Recv ZSGSRD 35261
17-03-18 02:53:52.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:52.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:52.424 -07 000000461 INF: FPGA: Recv ZSGSRD 35264
17-03-18 02:53:52.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.434 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:52.434 -07 000000626 INF: FPGA: Recv ZPIEZORD 30969
17-03-18 02:53:52.444 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:52.444 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.5 V.
17-03-18 02:53:52.444 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35261 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35261 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35257 (-166.0 uncal um), Max = 35266 (-166.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:53:52.444 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35261, posNoise = 5, negNoise = 4
17-03-18 02:53:52.444 -07 000000610 INF: Z Motor: After move to -0.166844, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:52.444 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:53:52.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:52.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:52.444 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:52.444 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:52.444 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:52.444 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:52.444 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:52.444 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:52.444 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:52.444 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:52.444 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:52.444 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:52.454 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:52.454 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:52.454 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:52.454 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:52.464 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:53:52.464 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:53:52.464 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:53:52.464 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:53:52.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36623 150\n [Camera]
17-03-18 02:53:52.664 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:53.064 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:53.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:53.064 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:53.064 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:53.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:53.064 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:53.064 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:53.064 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:53:53.074 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:53.074 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:53:53.254 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36623 784
17-03-18 02:53:53.404 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:53:53.454 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:53:53.454 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:53:53.454 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:53.454 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:53:53.454 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:53:53.454 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:53.454 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:53.454 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:53:53.454 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:53.464 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:53:53.594 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:53.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:53.594 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:53.604 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:53.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:53.604 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:53.604 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:53.604 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:53:53.604 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:53.604 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:53:53.784 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:53:53.794 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:53.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36623 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-18 02:53:53.904 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167572
17-03-18 02:53:53.904 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16757 mm
17-03-18 02:53:53.904 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:53.914 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:53:53.914 -07 000000618 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:53:53.914 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:53.914 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36606, sync = True, waitForSettling = False)
17-03-18 02:53:53.914 -07 000000561 INF: Z Motor: Moving to -0.167572 mm, started at -0.166847 mm, distance = -0.72 um
17-03-18 02:53:53.914 -07 000000467 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:53:53.924 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:53:53.924 -07 000000618 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:53.924 -07 000000618 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:53.924 -07 000000618 INF: Y Motor: Moving 1351 steps-31
17-03-18 02:53:53.924 -07 000000561 INF: FPGA: Xmit ZDACW 36606\n [Z Motor]
17-03-18 02:53:53.924 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:53:53.934 -07 000000561 INF: FPGA: 'ZDACW 36606' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:53:53.934 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:53.934 -07 000000576 INF: FPGA: Recv ZDACR 36606
17-03-18 02:53:53.944 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:53.944 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:53.944 -07 000000561 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 02:53:53.984 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:53:53.984 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:53:53.984 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:53.984 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:53:53.994 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:53:53.994 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:53.994 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:53.994 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:53:53.994 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:53:53.994 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:53:54.104 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.004458,
17-03-18 02:53:54.314 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:53:54.314 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:53:54.364 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:54.364 -07 000000579 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:53:54.374 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:53:54.374 -07 000000618 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:54.374 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:53:54.374 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-18 02:53:55.324 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:55.324 -07 000000561 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:53:55.334 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:55.334 -07 000000618 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:55.354 -07 000000618 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:55.354 -07 000000618 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:53:55.354 -07 000000618 INF: Y Motor: Moved to 71.5181 after 1445 ms (table move)
17-03-18 02:53:55.364 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167572 mm (DAC = 36606)
17-03-18 02:53:55.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.364 -07 000000467 INF: FPGA: Recv ZSGSRD 35372
17-03-18 02:53:55.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.374 -07 000000590 INF: FPGA: Recv ZSGSRD 35372
17-03-18 02:53:55.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.384 -07 000000512 INF: FPGA: Recv ZSGSRD 35376
17-03-18 02:53:55.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.394 -07 000000561 INF: FPGA: Recv ZSGSRD 35378
17-03-18 02:53:55.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.404 -07 000000629 INF: FPGA: Recv ZSGSRD 35374
17-03-18 02:53:55.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.414 -07 000000576 INF: FPGA: Recv ZSGSRD 35374
17-03-18 02:53:55.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.424 -07 000000590 INF: FPGA: Recv ZSGSRD 35372
17-03-18 02:53:55.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.434 -07 000000618 INF: FPGA: Recv ZSGSRD 35372
17-03-18 02:53:55.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.444 -07 000000467 INF: FPGA: Recv ZSGSRD 35375
17-03-18 02:53:55.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.454 -07 000000590 INF: FPGA: Recv ZSGSRD 35375
17-03-18 02:53:55.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:55.464 -07 000000606 INF: FPGA: Recv ZPIEZORD 31124
17-03-18 02:53:55.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.474 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.4 V.
17-03-18 02:53:55.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35374 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35374 (-166.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35372 (-166.7 uncal um), Max = 35378 (-166.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:53:55.474 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35374, posNoise = 4, negNoise = 2
17-03-18 02:53:55.474 -07 000000610 INF: Z Motor: After move to -0.167572, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:55.474 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 110 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:53:55.474 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:55.514 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 02:53:55.514 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:55.514 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.167573432313787. ----------
17-03-18 02:53:55.514 -07 000000610 INF: Cycle	105	Tile	15	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:55.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36429, sync = True, waitForSettling = True)
17-03-18 02:53:55.514 -07 000000610 INF: Z Motor: Moving to -0.166761 mm, started at -0.167573 mm, distance = 0.81 um
17-03-18 02:53:55.514 -07 000000610 INF: FPGA: Xmit ZDACW 36429\n [Z Motor]
17-03-18 02:53:55.514 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:53:55.524 -07 000000610 INF: FPGA: 'ZDACW 36429' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:53:55.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:55.524 -07 000000461 INF: FPGA: Recv ZDACR 36429
17-03-18 02:53:55.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:55.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.684 -07 000000467 INF: FPGA: Recv ZSGSRD 35250
17-03-18 02:53:55.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.694 -07 000000502 INF: FPGA: Recv ZSGSRD 35252
17-03-18 02:53:55.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.704 -07 000000461 INF: FPGA: Recv ZSGSRD 35246
17-03-18 02:53:55.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.714 -07 000000569 INF: FPGA: Recv ZSGSRD 35244
17-03-18 02:53:55.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.724 -07 000000590 INF: FPGA: Recv ZSGSRD 35257
17-03-18 02:53:55.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.734 -07 000000626 INF: FPGA: Recv ZSGSRD 35248
17-03-18 02:53:55.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.744 -07 000000561 INF: FPGA: Recv ZSGSRD 35243
17-03-18 02:53:55.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.754 -07 000000606 INF: FPGA: Recv ZSGSRD 35253
17-03-18 02:53:55.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.764 -07 000000430 INF: FPGA: Recv ZSGSRD 35248
17-03-18 02:53:55.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:55.774 -07 000000606 INF: FPGA: Recv ZSGSRD 35246
17-03-18 02:53:55.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:55.784 -07 000000576 INF: FPGA: Recv ZPIEZORD 30955
17-03-18 02:53:55.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:55.794 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.5 V.
17-03-18 02:53:55.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35249 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35248 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35243 (-165.9 uncal um), Max = 35257 (-166.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:53:55.794 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35249, posNoise = 8, negNoise = 6
17-03-18 02:53:55.794 -07 000000610 INF: Z Motor: After move to -0.166761, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:55.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:53:55.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:55.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:55.794 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:55.794 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:55.794 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:55.794 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:55.794 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:55.794 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:55.794 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:53:55.794 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:55.794 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:55.794 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:55.804 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:55.804 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:55.804 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:53:55.804 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:55.814 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:53:55.814 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:53:55.814 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:53:55.814 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:53:55.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36606 150\n [Camera]
17-03-18 02:53:56.014 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:56.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:56.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:56.414 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:56.414 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:56.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:56.414 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:56.414 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:56.414 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:53:56.424 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:56.424 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:53:56.524 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:53:56.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:53:56.604 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36606 787
17-03-18 02:53:56.754 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:53:56.794 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:53:56.794 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:53:56.794 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:56.794 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:53:56.794 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:53:56.794 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:56.794 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:56.794 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:53:56.794 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:56.804 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:53:56.944 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:53:56.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:53:56.944 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:56.954 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:53:56.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:53:56.954 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:56.954 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:56.954 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:53:56.964 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:56.964 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:53:57.134 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:53:57.134 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:53:57.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36606 150' command took 2 ms to send, 1319 ms to get response, and 1326 ms overall
17-03-18 02:53:57.144 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167171
17-03-18 02:53:57.144 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16717 mm
17-03-18 02:53:57.144 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:53:57.144 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 36518, sync = True, waitForSettling = False)
17-03-18 02:53:57.144 -07 000000502 INF: Z Motor: Moving to -0.167169 mm, started at -0.166770 mm, distance = -0.40 um
17-03-18 02:53:57.144 -07 000000502 INF: FPGA: Xmit ZDACW 36518\n [Z Motor]
17-03-18 02:53:57.144 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:53:57.144 -07 000000569 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 02:53:57.154 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:53:57.154 -07 000000502 INF: FPGA: 'ZDACW 36518' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:53:57.154 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:57.154 -07 000000561 INF: FPGA: Recv ZDACR 36518
17-03-18 02:53:57.164 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:57.164 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:57.164 -07 000000502 INF: Z Motor: MoveAbsStepped took 12 ms (did NOT wait for settling yet))
17-03-18 02:53:57.164 -07 000000576 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:53:57.174 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:53:57.174 -07 000000569 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:57.174 -07 000000569 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:53:57.174 -07 000000569 INF: Y Motor: Moving 1351 steps-30
17-03-18 02:53:57.174 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:53:57.334 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:53:57.334 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:53:57.334 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:57.334 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:53:57.334 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:53:57.334 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:53:57.344 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:57.344 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:53:57.344 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:53:57.354 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:53:57.544 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:53:57.544 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 02:53:57.594 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:57.604 -07 000000579 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:53:57.604 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:53:57.604 -07 000000569 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:57.604 -07 000000569 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:53:57.604 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.234 mm/sec
17-03-18 02:53:58.554 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:53:58.554 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:53:58.564 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:53:58.564 -07 000000569 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:53:58.584 -07 000000569 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:53:58.584 -07 000000569 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:53:58.584 -07 000000569 INF: Y Motor: Moved to 72.3491 after 1440 ms (table move)
17-03-18 02:53:58.594 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167169 mm (DAC = 36518)
17-03-18 02:53:58.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.594 -07 000000626 INF: FPGA: Recv ZSGSRD 35318
17-03-18 02:53:58.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:53:58.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.604 -07 000000501 INF: FPGA: Recv ZSGSRD 35315
17-03-18 02:53:58.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.614 -07 000000444 INF: FPGA: Recv ZSGSRD 35319
17-03-18 02:53:58.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.624 -07 000000467 INF: FPGA: Recv ZSGSRD 35314
17-03-18 02:53:58.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.634 -07 000000606 INF: FPGA: Recv ZSGSRD 35313
17-03-18 02:53:58.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.644 -07 000000618 INF: FPGA: Recv ZSGSRD 35312
17-03-18 02:53:58.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.654 -07 000000590 INF: FPGA: Recv ZSGSRD 35303
17-03-18 02:53:58.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.664 -07 000000561 INF: FPGA: Recv ZSGSRD 35312
17-03-18 02:53:58.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.674 -07 000000430 INF: FPGA: Recv ZSGSRD 35312
17-03-18 02:53:58.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.684 -07 000000576 INF: FPGA: Recv ZSGSRD 35317
17-03-18 02:53:58.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:58.694 -07 000000629 INF: FPGA: Recv ZPIEZORD 31049
17-03-18 02:53:58.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.704 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.4 V.
17-03-18 02:53:58.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35314 (-166.3 uncal um), Error = 0.8 uncal um, Median = 35314 (-166.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35303 (-166.2 uncal um), Max = 35319 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:53:58.704 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35314, posNoise = 5, negNoise = 11
17-03-18 02:53:58.704 -07 000000610 INF: Z Motor: After move to -0.167169, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:58.704 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 109 ms (allowed 150 ms), total time = 1552 ms
17-03-18 02:53:58.704 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:53:58.754 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:53:58.754 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:53:58.754 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.167187979585281. ----------
17-03-18 02:53:58.754 -07 000000610 INF: Cycle	105	Tile	16	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:53:58.754 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36342, sync = True, waitForSettling = True)
17-03-18 02:53:58.754 -07 000000610 INF: Z Motor: Moving to -0.166363 mm, started at -0.167188 mm, distance = 0.82 um
17-03-18 02:53:58.754 -07 000000610 INF: FPGA: Xmit ZDACW 36342\n [Z Motor]
17-03-18 02:53:58.754 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:53:58.764 -07 000000610 INF: FPGA: 'ZDACW 36342' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:53:58.764 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:53:58.764 -07 000000576 INF: FPGA: Recv ZDACR 36342
17-03-18 02:53:58.774 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.774 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:53:58.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.924 -07 000000502 INF: FPGA: Recv ZSGSRD 35182
17-03-18 02:53:58.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.934 -07 000000430 INF: FPGA: Recv ZSGSRD 35181
17-03-18 02:53:58.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.944 -07 000000606 INF: FPGA: Recv ZSGSRD 35186
17-03-18 02:53:58.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.954 -07 000000579 INF: FPGA: Recv ZSGSRD 35189
17-03-18 02:53:58.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.964 -07 000000576 INF: FPGA: Recv ZSGSRD 35192
17-03-18 02:53:58.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.974 -07 000000561 INF: FPGA: Recv ZSGSRD 35185
17-03-18 02:53:58.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.984 -07 000000626 INF: FPGA: Recv ZSGSRD 35192
17-03-18 02:53:58.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:58.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:58.994 -07 000000501 INF: FPGA: Recv ZSGSRD 35185
17-03-18 02:53:59.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:59.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:59.004 -07 000000502 INF: FPGA: Recv ZSGSRD 35183
17-03-18 02:53:59.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:59.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:53:59.014 -07 000000590 INF: FPGA: Recv ZSGSRD 35187
17-03-18 02:53:59.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:59.024 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:53:59.024 -07 000000462 INF: FPGA: Recv ZPIEZORD 30877
17-03-18 02:53:59.034 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:53:59.034 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.545 V. Piezo Error = -9.5 V.
17-03-18 02:53:59.034 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35186 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35186 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35181 (-165.5 uncal um), Max = 35192 (-165.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:53:59.034 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35186, posNoise = 6, negNoise = 5
17-03-18 02:53:59.034 -07 000000610 INF: Z Motor: After move to -0.166363, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:53:59.034 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:53:59.034 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:53:59.034 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:53:59.034 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:53:59.034 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:53:59.034 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:53:59.034 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:53:59.034 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:53:59.034 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:53:59.034 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:53:59.034 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:53:59.034 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:53:59.034 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:53:59.044 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:53:59.044 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:53:59.044 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:53:59.044 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:53:59.054 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:53:59.054 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:53:59.054 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:53:59.054 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:53:59.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36518 150\n [Camera]
17-03-18 02:53:59.264 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:53:59.464 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.005817,
17-03-18 02:53:59.664 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:53:59.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:53:59.674 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:53:59.674 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:53:59.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:53:59.674 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:53:59.674 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:53:59.674 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:53:59.674 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:53:59.674 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:53:59.864 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36518 784
17-03-18 02:54:00.014 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:00.044 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:54:00.044 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:54:00.044 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:00.044 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:54:00.054 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:54:00.054 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:00.054 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:00.054 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:54:00.054 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:00.064 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:54:00.204 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:00.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:00.204 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:00.204 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:00.204 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:54:00.204 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:00.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:00.214 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:00.214 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:00.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1112907760, 0x0, 418435064) start.
17-03-18 02:54:00.394 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:54:00.394 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:00.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36518 150' command took 2 ms to send, 1316 ms to get response, and 1336 ms overall
17-03-18 02:54:00.394 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.166870
17-03-18 02:54:00.394 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16687 mm
17-03-18 02:54:00.394 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:00.404 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 36453, sync = True, waitForSettling = False)
17-03-18 02:54:00.404 -07 000000626 INF: Z Motor: Moving to -0.166871 mm, started at -0.166366 mm, distance = -0.51 um
17-03-18 02:54:00.404 -07 000000626 INF: FPGA: Xmit ZDACW 36453\n [Z Motor]
17-03-18 02:54:00.404 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:54:00.404 -07 000000444 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:54:00.404 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:54:00.414 -07 000000626 INF: FPGA: 'ZDACW 36453' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:54:00.414 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:00.414 -07 000000501 INF: FPGA: Recv ZDACR 36453
17-03-18 02:54:00.424 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:00.424 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:00.424 -07 000000626 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-18 02:54:00.424 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:54:00.434 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:54:00.434 -07 000000444 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:00.434 -07 000000444 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:00.434 -07 000000444 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:54:00.434 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:00.584 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1112907760, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:54:00.584 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:54:00.584 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:00.594 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:54:00.594 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:54:00.594 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:00.594 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:00.594 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:00.594 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:54:00.604 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:54:00.814 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:54:00.814 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 381 ms overall
17-03-18 02:54:00.854 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:00.864 -07 000000512 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:54:00.874 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:00.874 -07 000000444 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:00.874 -07 000000444 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 02:54:00.874 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.214 mm/sec
17-03-18 02:54:01.524 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:01.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:01.824 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:01.824 -07 000000569 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:54:01.834 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.834 -07 000000444 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:01.854 -07 000000444 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:01.854 -07 000000444 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:54:01.854 -07 000000444 INF: Y Motor: Moved to 73.1758 after 1453 ms (table move)
17-03-18 02:54:01.864 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166871 mm (DAC = 36453)
17-03-18 02:54:01.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.864 -07 000000512 INF: FPGA: Recv ZSGSRD 35270
17-03-18 02:54:01.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:01.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.874 -07 000000462 INF: FPGA: Recv ZSGSRD 35255
17-03-18 02:54:01.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.884 -07 000000430 INF: FPGA: Recv ZSGSRD 35261
17-03-18 02:54:01.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.894 -07 000000576 INF: FPGA: Recv ZSGSRD 35266
17-03-18 02:54:01.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.904 -07 000000424 INF: FPGA: Recv ZSGSRD 35269
17-03-18 02:54:01.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.914 -07 000000561 INF: FPGA: Recv ZSGSRD 35273
17-03-18 02:54:01.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.924 -07 000000455 INF: FPGA: Recv ZSGSRD 35267
17-03-18 02:54:01.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.934 -07 000000606 INF: FPGA: Recv ZSGSRD 35267
17-03-18 02:54:01.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.944 -07 000000576 INF: FPGA: Recv ZSGSRD 35264
17-03-18 02:54:01.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:01.954 -07 000000579 INF: FPGA: Recv ZSGSRD 35260
17-03-18 02:54:01.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:01.964 -07 000000512 INF: FPGA: Recv ZPIEZORD 31023
17-03-18 02:54:01.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:01.974 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.4 V.
17-03-18 02:54:01.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35265 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35266 (-166.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35255 (-165.9 uncal um), Max = 35273 (-166.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:54:01.974 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35265, posNoise = 8, negNoise = 10
17-03-18 02:54:01.974 -07 000000610 INF: Z Motor: After move to -0.166871, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:01.974 -07 000000610 INF: Z Motor: Settle wait time = 1456 ms, measure time = 109 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:54:01.974 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:02.024 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:54:02.024 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:02.024 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.166873193190335. ----------
17-03-18 02:54:02.024 -07 000000610 INF: Cycle	105	Tile	17	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:02.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36276, sync = True, waitForSettling = True)
17-03-18 02:54:02.024 -07 000000610 INF: Z Motor: Moving to -0.166061 mm, started at -0.166873 mm, distance = 0.81 um
17-03-18 02:54:02.024 -07 000000610 INF: FPGA: Xmit ZDACW 36276\n [Z Motor]
17-03-18 02:54:02.024 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:54:02.034 -07 000000610 INF: FPGA: 'ZDACW 36276' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:54:02.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:02.034 -07 000000626 INF: FPGA: Recv ZDACR 36276
17-03-18 02:54:02.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:02.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.194 -07 000000512 INF: FPGA: Recv ZSGSRD 35136
17-03-18 02:54:02.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.204 -07 000000424 INF: FPGA: Recv ZSGSRD 35141
17-03-18 02:54:02.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.214 -07 000000606 INF: FPGA: Recv ZSGSRD 35142
17-03-18 02:54:02.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.224 -07 000000569 INF: FPGA: Recv ZSGSRD 35141
17-03-18 02:54:02.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.234 -07 000000629 INF: FPGA: Recv ZSGSRD 35142
17-03-18 02:54:02.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.244 -07 000000590 INF: FPGA: Recv ZSGSRD 35143
17-03-18 02:54:02.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.254 -07 000000455 INF: FPGA: Recv ZSGSRD 35142
17-03-18 02:54:02.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.264 -07 000000444 INF: FPGA: Recv ZSGSRD 35141
17-03-18 02:54:02.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.274 -07 000000502 INF: FPGA: Recv ZSGSRD 35135
17-03-18 02:54:02.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:02.284 -07 000000579 INF: FPGA: Recv ZSGSRD 35141
17-03-18 02:54:02.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:02.294 -07 000000618 INF: FPGA: Recv ZPIEZORD 30863
17-03-18 02:54:02.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:02.304 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.535 V. Piezo Error = -9.4 V.
17-03-18 02:54:02.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35140 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35141 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35135 (-165.2 uncal um), Max = 35143 (-165.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:54:02.304 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35140, posNoise = 3, negNoise = 5
17-03-18 02:54:02.304 -07 000000610 INF: Z Motor: After move to -0.166061, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:02.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:54:02.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:02.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:02.304 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:02.304 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:02.304 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:02.304 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:02.304 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:02.304 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:02.304 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:54:02.304 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:02.304 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:02.304 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:02.314 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:02.314 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:02.314 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:02.314 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:02.324 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:54:02.324 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:54:02.324 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:54:02.324 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:54:02.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36453 150\n [Camera]
17-03-18 02:54:02.534 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:02.934 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:02.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:02.934 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:02.934 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:02.934 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148330024, 0x0, 391868352) start.
17-03-18 02:54:02.934 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:02.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:02.934 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:02.934 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:02.934 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-18 02:54:03.124 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36453 784
17-03-18 02:54:03.274 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:03.314 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1148330024, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:54:03.424 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 483 ms.
17-03-18 02:54:03.424 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 484 ms.
17-03-18 02:54:03.424 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:03.424 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 488 ms.
17-03-18 02:54:03.424 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:03.424 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:03.424 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:03.424 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 494 ms.
17-03-18 02:54:03.434 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 495 ms.
17-03-18 02:54:03.464 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:03.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:03.464 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:03.464 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:03.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:03.464 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:03.474 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:03.474 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:54:03.474 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:03.474 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1112907760, 0x0, 418435064) start.
17-03-18 02:54:03.654 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:54:03.654 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:03.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36453 150' command took 2 ms to send, 1317 ms to get response, and 1327 ms overall
17-03-18 02:54:03.654 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:54:03.664 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166070166672615. ------
17-03-18 02:54:03.664 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:03.664 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17241 mm
17-03-18 02:54:03.664 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:03.664 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:03.664 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:54:03.664 -07 000000629 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-18 02:54:03.664 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37662, sync = True, waitForSettling = False)
17-03-18 02:54:03.664 -07 000000626 INF: Z Motor: Moving to -0.172406 mm, started at -0.166070 mm, distance = -6.34 um
17-03-18 02:54:03.674 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:54:03.674 -07 000000626 INF: FPGA: Xmit ZDACW 37662\n [Z Motor]
17-03-18 02:54:03.674 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:54:03.684 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:03.684 -07 000000626 INF: FPGA: 'ZDACW 37662' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:54:03.684 -07 000000501 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:54:03.694 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:54:03.694 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-18 02:54:03.694 -07 000000629 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:03.694 -07 000000629 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:03.694 -07 000000629 INF: Y Motor: Moving 1355 steps-35
17-03-18 02:54:03.704 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:03.704 -07 000000501 INF: FPGA: Recv ZDACR 37662
17-03-18 02:54:03.714 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:03.714 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:54:03.714 -07 000000626 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:54:03.844 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:54:03.844 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:54:03.844 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:03.844 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1112907760, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:54:03.844 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:54:03.844 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:03.854 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:03.854 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:54:03.854 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:03.864 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:54:03.894 -07 000000461 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:54:03.894 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:54:04.084 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:54:04.094 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 399 ms overall
17-03-18 02:54:04.124 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:04.134 -07 000000579 INF: FPGA: Recv YRDPOS 151567
17-03-18 02:54:04.134 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:54:04.134 -07 000000629 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:04.134 -07 000000629 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:54:04.134 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.847 mm, average velocity = 2.117 mm/sec
17-03-18 02:54:04.824 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.993549,
17-03-18 02:54:05.084 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:05.084 -07 000000561 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:54:05.094 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:05.094 -07 000000629 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:05.114 -07 000000629 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:05.114 -07 000000629 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:54:05.114 -07 000000629 INF: Y Motor: Moved to 74.0078 after 1442 ms (table move)
17-03-18 02:54:05.114 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172406 mm (DAC = 37662)
17-03-18 02:54:05.114 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.114 -07 000000561 INF: FPGA: Recv ZSGSRD 36131
17-03-18 02:54:05.124 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:54:05.124 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.124 -07 000000455 INF: FPGA: Recv ZSGSRD 36126
17-03-18 02:54:05.134 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.134 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.134 -07 000000629 INF: FPGA: Recv ZSGSRD 36126
17-03-18 02:54:05.144 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.144 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.144 -07 000000461 INF: FPGA: Recv ZSGSRD 36134
17-03-18 02:54:05.154 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.154 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.154 -07 000000501 INF: FPGA: Recv ZSGSRD 36133
17-03-18 02:54:05.164 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.164 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.164 -07 000000424 INF: FPGA: Recv ZSGSRD 36131
17-03-18 02:54:05.174 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.174 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.174 -07 000000591 INF: FPGA: Recv ZSGSRD 36122
17-03-18 02:54:05.184 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.184 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.184 -07 000000455 INF: FPGA: Recv ZSGSRD 36125
17-03-18 02:54:05.194 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.194 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.194 -07 000000606 INF: FPGA: Recv ZSGSRD 36128
17-03-18 02:54:05.204 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.204 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:05.204 -07 000000629 INF: FPGA: Recv ZSGSRD 36127
17-03-18 02:54:05.214 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.214 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:05.214 -07 000000430 INF: FPGA: Recv ZPIEZORD 32149
17-03-18 02:54:05.224 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:05.224 -07 000000462 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.747 V. Piezo Error = -8.8 V.
17-03-18 02:54:05.224 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36128 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36128 (-171.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36122 (-171.5 uncal um), Max = 36134 (-171.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:54:05.224 -07 000000462 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36128, posNoise = 6, negNoise = 6
17-03-18 02:54:05.224 -07 000000462 INF: Z Motor: After move to -0.172406, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:05.224 -07 000000462 INF: Z Motor: Settle wait time = 1445 ms, measure time = 106 ms (allowed 150 ms), total time = 1551 ms
17-03-18 02:54:05.224 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:05.274 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:54:05.274 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:05.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:05.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:05.274 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:05.274 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:05.274 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:54:05.274 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:05.274 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:05.274 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:54:05.284 -07 000000629 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:54:05.284 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:54:05.294 -07 000000629 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:54:05.294 -07 000000629 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:54:05.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:54:05.344 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:54:05.634 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:54:05.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:54:05.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:54:05.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-18 02:54:05.674 -07 000000569 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:54:05.674 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:54:05.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:54:05.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:54:05.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:05.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:54:05.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:54:05.784 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:05.784 -07 000000590 INF: Autofocus start
17-03-18 02:54:05.784 -07 000000590 INF: MeasureProfile start
17-03-18 02:54:05.784 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:05.794 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:54:05.794 -07 000000461 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:54:05.794 -07 000000590 INF: MeasureProfile done
17-03-18 02:54:05.794 -07 000000590 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:54:05.794 -07 000000590 INF: Autofocus finished
17-03-18 02:54:05.994 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:54:05.994 -07 000000461 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:54:05.994 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172417288268675. ----------
17-03-18 02:54:05.994 -07 000000610 INF: Cycle	105	Tile	18	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:06.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36195, sync = True, waitForSettling = True)
17-03-18 02:54:06.004 -07 000000610 INF: Z Motor: Moving to -0.165690 mm, started at -0.172417 mm, distance = 6.73 um
17-03-18 02:54:06.004 -07 000000610 INF: FPGA: Xmit ZDACW 36195\n [Z Motor]
17-03-18 02:54:06.004 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:54:06.014 -07 000000610 INF: FPGA: 'ZDACW 36195' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:06.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:06.014 -07 000000455 INF: FPGA: Recv ZDACR 36195
17-03-18 02:54:06.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:06.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.174 -07 000000576 INF: FPGA: Recv ZSGSRD 35079
17-03-18 02:54:06.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:06.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.184 -07 000000590 INF: FPGA: Recv ZSGSRD 35089
17-03-18 02:54:06.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.194 -07 000000579 INF: FPGA: Recv ZSGSRD 35085
17-03-18 02:54:06.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.204 -07 000000444 INF: FPGA: Recv ZSGSRD 35081
17-03-18 02:54:06.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.214 -07 000000591 INF: FPGA: Recv ZSGSRD 35080
17-03-18 02:54:06.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.224 -07 000000430 INF: FPGA: Recv ZSGSRD 35086
17-03-18 02:54:06.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.234 -07 000000512 INF: FPGA: Recv ZSGSRD 35091
17-03-18 02:54:06.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.244 -07 000000461 INF: FPGA: Recv ZSGSRD 35083
17-03-18 02:54:06.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.254 -07 000000424 INF: FPGA: Recv ZSGSRD 35086
17-03-18 02:54:06.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:06.264 -07 000000569 INF: FPGA: Recv ZSGSRD 35083
17-03-18 02:54:06.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:06.274 -07 000000430 INF: FPGA: Recv ZPIEZORD 30771
17-03-18 02:54:06.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:06.284 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.523 V. Piezo Error = -9.5 V.
17-03-18 02:54:06.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35084 (-164.8 uncal um), Error = 0.8 uncal um, Median = 35084 (-164.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35079 (-164.8 uncal um), Max = 35091 (-164.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:54:06.284 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35084, posNoise = 7, negNoise = 5
17-03-18 02:54:06.284 -07 000000610 INF: Z Motor: After move to -0.165690, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:06.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:54:06.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:06.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:06.284 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:06.284 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:06.284 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:06.284 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:06.284 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:06.284 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:06.284 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:06.284 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:06.284 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:54:06.284 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:06.294 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:06.294 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:06.294 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:54:06.294 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:06.294 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:54:06.294 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:54:06.304 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:54:06.304 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:54:06.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36372 150\n [Camera]
17-03-18 02:54:06.504 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:06.524 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:06.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:06.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:06.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:06.904 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:06.904 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:06.904 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:06.904 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:54:06.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:06.914 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:06.914 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:06.914 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:54:07.094 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36372 784
17-03-18 02:54:07.244 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:07.284 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:54:07.284 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:54:07.284 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:07.284 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:54:07.284 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:54:07.284 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:07.294 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:54:07.294 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:54:07.294 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:07.294 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:54:07.444 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1128
17-03-18 02:54:07.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1128
17-03-18 02:54:07.444 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:07.444 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1128
17-03-18 02:54:07.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1128
17-03-18 02:54:07.444 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:07.564 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:07.574 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:54:07.574 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:07.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:54:07.624 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:54:07.634 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:07.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36372 150' command took 2 ms to send, 1320 ms to get response, and 1328 ms overall
17-03-18 02:54:07.634 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165533
17-03-18 02:54:07.634 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16553 mm
17-03-18 02:54:07.634 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:07.634 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:54:07.634 -07 000000462 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-18 02:54:07.634 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:07.634 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 36161, sync = True, waitForSettling = False)
17-03-18 02:54:07.634 -07 000000444 INF: Z Motor: Moving to -0.165534 mm, started at -0.165710 mm, distance = 0.18 um
17-03-18 02:54:07.634 -07 000000626 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:54:07.644 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:07.644 -07 000000462 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:07.644 -07 000000462 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:07.644 -07 000000462 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:54:07.644 -07 000000444 INF: FPGA: Xmit ZDACW 36161\n [Z Motor]
17-03-18 02:54:07.644 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:54:07.654 -07 000000444 INF: FPGA: 'ZDACW 36161' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:54:07.654 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:07.664 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:07.664 -07 000000561 INF: FPGA: Recv ZDACR 36161
17-03-18 02:54:07.674 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:54:07.674 -07 000000444 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 02:54:07.944 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:54:07.944 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:54:07.944 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:07.944 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:54:07.944 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:54:07.944 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:07.954 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:54:07.954 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:54:07.954 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 02:54:07.964 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 02:54:08.024 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 02:54:08.024 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 02:54:08.054 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:08.064 -07 000000424 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:54:08.064 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:54:08.064 -07 000000462 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:08.064 -07 000000462 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 02:54:08.064 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 02:54:09.014 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:09.014 -07 000000444 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:54:09.024 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.024 -07 000000462 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:09.034 -07 000000462 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:09.034 -07 000000462 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:09.034 -07 000000462 INF: Y Motor: Moved to 74.8311 after 1403 ms (table move)
17-03-18 02:54:09.044 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165534 mm (DAC = 36161)
17-03-18 02:54:09.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.044 -07 000000512 INF: FPGA: Recv ZSGSRD 35064
17-03-18 02:54:09.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:09.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.054 -07 000000502 INF: FPGA: Recv ZSGSRD 35057
17-03-18 02:54:09.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.064 -07 000000461 INF: FPGA: Recv ZSGSRD 35057
17-03-18 02:54:09.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.074 -07 000000579 INF: FPGA: Recv ZSGSRD 35055
17-03-18 02:54:09.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.084 -07 000000629 INF: FPGA: Recv ZSGSRD 35061
17-03-18 02:54:09.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.094 -07 000000590 INF: FPGA: Recv ZSGSRD 35065
17-03-18 02:54:09.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.104 -07 000000467 INF: FPGA: Recv ZSGSRD 35065
17-03-18 02:54:09.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.114 -07 000000569 INF: FPGA: Recv ZSGSRD 35057
17-03-18 02:54:09.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.124 -07 000000501 INF: FPGA: Recv ZSGSRD 35062
17-03-18 02:54:09.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:09.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.134 -07 000000430 INF: FPGA: Recv ZSGSRD 35058
17-03-18 02:54:09.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:09.144 -07 000000462 INF: FPGA: Recv ZPIEZORD 30769
17-03-18 02:54:09.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.154 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.518 V. Piezo Error = -9.4 V.
17-03-18 02:54:09.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35060 (-164.7 uncal um), Error = 0.8 uncal um, Median = 35060 (-164.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35055 (-164.7 uncal um), Max = 35065 (-164.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:54:09.154 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35060, posNoise = 5, negNoise = 5
17-03-18 02:54:09.154 -07 000000610 INF: Z Motor: After move to -0.165534, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:09.154 -07 000000610 INF: Z Motor: Settle wait time = 1405 ms, measure time = 109 ms (allowed 150 ms), total time = 1514 ms
17-03-18 02:54:09.154 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:09.204 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1567 ms
17-03-18 02:54:09.204 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:09.204 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.165556229701274. ----------
17-03-18 02:54:09.204 -07 000000610 INF: Cycle	105	Tile	19	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:09.204 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35984, sync = True, waitForSettling = True)
17-03-18 02:54:09.204 -07 000000610 INF: Z Motor: Moving to -0.164724 mm, started at -0.165556 mm, distance = 0.83 um
17-03-18 02:54:09.204 -07 000000610 INF: FPGA: Xmit ZDACW 35984\n [Z Motor]
17-03-18 02:54:09.214 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:54:09.214 -07 000000610 INF: FPGA: 'ZDACW 35984' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:09.214 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:09.214 -07 000000618 INF: FPGA: Recv ZDACR 35984
17-03-18 02:54:09.224 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.224 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:09.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.374 -07 000000424 INF: FPGA: Recv ZSGSRD 34931
17-03-18 02:54:09.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:09.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.384 -07 000000629 INF: FPGA: Recv ZSGSRD 34933
17-03-18 02:54:09.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.394 -07 000000444 INF: FPGA: Recv ZSGSRD 34932
17-03-18 02:54:09.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.404 -07 000000430 INF: FPGA: Recv ZSGSRD 34931
17-03-18 02:54:09.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.414 -07 000000618 INF: FPGA: Recv ZSGSRD 34933
17-03-18 02:54:09.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.424 -07 000000590 INF: FPGA: Recv ZSGSRD 34937
17-03-18 02:54:09.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.434 -07 000000502 INF: FPGA: Recv ZSGSRD 34932
17-03-18 02:54:09.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.444 -07 000000569 INF: FPGA: Recv ZSGSRD 34926
17-03-18 02:54:09.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.454 -07 000000576 INF: FPGA: Recv ZSGSRD 34926
17-03-18 02:54:09.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:09.474 -07 000000502 INF: FPGA: Recv ZSGSRD 34938
17-03-18 02:54:09.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:54:09.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:09.484 -07 000000606 INF: FPGA: Recv ZPIEZORD 30605
17-03-18 02:54:09.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:09.494 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.491 V. Piezo Error = -9.5 V.
17-03-18 02:54:09.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34932 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34932 (-163.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 34926 (-163.8 uncal um), Max = 34938 (-163.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:54:09.494 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34932, posNoise = 6, negNoise = 6
17-03-18 02:54:09.494 -07 000000610 INF: Z Motor: After move to -0.164724, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:09.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 02:54:09.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:09.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:09.494 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:09.494 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:09.494 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:09.494 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:09.494 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:09.494 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:09.494 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:09.494 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:09.494 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:09.494 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:09.504 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:54:09.504 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:09.504 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:09.504 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:09.504 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:54:09.504 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:54:09.504 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:54:09.514 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:54:09.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 36161 150\n [Camera]
17-03-18 02:54:09.714 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:54:10.114 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-18 02:54:10.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-18 02:54:10.114 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:10.114 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-18 02:54:10.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-18 02:54:10.114 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:10.114 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:10.114 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:54:10.124 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:10.124 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:54:10.184 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.986717,
17-03-18 02:54:10.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36161 784
17-03-18 02:54:10.454 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:10.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:54:10.494 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:54:10.494 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:10.494 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:10.504 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:54:10.504 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:54:10.504 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:54:10.504 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:10.514 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:10.514 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:54:10.644 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:10.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:10.644 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:10.644 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:10.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:10.644 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:10.654 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:10.654 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:54:10.654 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:10.654 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:54:10.834 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 02:54:10.844 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:10.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 36161 150' command took 2 ms to send, 1320 ms to get response, and 1329 ms overall
17-03-18 02:54:11.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:54:11.034 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:54:11.034 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:11.034 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:54:11.034 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:54:11.034 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:11.034 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:11.034 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:54:11.034 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:54:11.034 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:11.044 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:54:11.084 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:54:11.084 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:54:11.124 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:54:11.124 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:54:11.124 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:54:11.124 -07 000000461 INF: FPGA: Recv EMCUR 
17-03-18 02:54:11.134 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:54:11.134 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:54:11.524 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:11.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:11.634 -07 000000576 INF: FPGA: Recv EMIN
17-03-18 02:54:11.634 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:54:11.634 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:54:11.634 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-18 02:54:11.644 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:54:11.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:54:11.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164733930547129. ------
17-03-18 02:54:11.644 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13942 mm
17-03-18 02:54:11.644 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:11.644 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:11.654 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:54:11.654 -07 000000576 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 02:54:11.654 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:11.654 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 30457, sync = True, waitForSettling = False)
17-03-18 02:54:11.654 -07 000000512 INF: Z Motor: Moving to -0.139423 mm, started at -0.164734 mm, distance = 25.31 um
17-03-18 02:54:11.654 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:11.654 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:54:11.654 -07 000000462 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:54:11.664 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:11.664 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:54:11.664 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:11.664 -07 000000576 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:54:11.664 -07 000000576 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:54:11.674 -07 000000512 INF: FPGA: Xmit ZDACW 30457\n [Z Motor]
17-03-18 02:54:11.674 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:54:11.684 -07 000000576 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:54:11.684 -07 000000512 INF: FPGA: 'ZDACW 30457' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:54:11.694 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:11.694 -07 000000579 INF: FPGA: Recv ZDACR 30457
17-03-18 02:54:11.704 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:54:11.704 -07 000000512 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 02:54:11.864 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:54:11.864 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-18 02:54:13.314 -07 000000444 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:54:13.314 -07 000000576 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1622 ms to get response, and 1644 ms overall
17-03-18 02:54:13.314 -07 000000576 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:54:13.314 -07 000000576 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:54:13.314 -07 000000576 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.918 mm, average velocity = 9.074 mm/sec
17-03-18 02:54:15.544 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.993549,
17-03-18 02:54:16.164 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:16.164 -07 000000512 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:54:16.174 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:16.174 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:16.204 -07 000000576 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:16.204 -07 000000576 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-18 02:54:16.204 -07 000000576 INF: Y Motor: Moved to 59.9111 after 4557 ms
17-03-18 02:54:16.214 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139423 mm (DAC = 30457)
17-03-18 02:54:16.214 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.214 -07 000000590 INF: FPGA: Recv ZSGSRD 30994
17-03-18 02:54:16.224 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:16.224 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.224 -07 000000467 INF: FPGA: Recv ZSGSRD 30988
17-03-18 02:54:16.234 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:16.234 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.234 -07 000000501 INF: FPGA: Recv ZSGSRD 30989
17-03-18 02:54:16.244 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:16.244 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.244 -07 000000629 INF: FPGA: Recv ZSGSRD 30993
17-03-18 02:54:16.254 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:16.254 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.254 -07 000000576 INF: FPGA: Recv ZSGSRD 30994
17-03-18 02:54:16.264 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:16.264 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.264 -07 000000430 INF: FPGA: Recv ZSGSRD 30994
17-03-18 02:54:16.274 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:16.274 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.274 -07 000000467 INF: FPGA: Recv ZSGSRD 30988
17-03-18 02:54:16.284 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:16.284 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.284 -07 000000501 INF: FPGA: Recv ZSGSRD 30999
17-03-18 02:54:16.294 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:16.294 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.294 -07 000000455 INF: FPGA: Recv ZSGSRD 30995
17-03-18 02:54:16.304 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:16.304 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:16.304 -07 000000512 INF: FPGA: Recv ZSGSRD 30988
17-03-18 02:54:16.314 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:16.314 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:16.314 -07 000000569 INF: FPGA: Recv ZPIEZORD 26468
17-03-18 02:54:16.324 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:16.324 -07 000000606 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.647 V. Piezo Error = -9.9 V.
17-03-18 02:54:16.324 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30992 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30994 (-138.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30988 (-138.6 uncal um), Max = 30999 (-138.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:54:16.324 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30992, posNoise = 7, negNoise = 4
17-03-18 02:54:16.324 -07 000000606 INF: Z Motor: After move to -0.139423, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:16.324 -07 000000606 INF: Z Motor: Settle wait time = 4560 ms, measure time = 108 ms (allowed 150 ms), total time = 4668 ms
17-03-18 02:54:16.324 -07 000000606 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:16.374 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4721 ms
17-03-18 02:54:16.374 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:16.374 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:16.374 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:16.374 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:16.374 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:16.374 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:54:16.374 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:16.374 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:54:16.374 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:54:16.394 -07 000000430 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 02:54:16.394 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:54:16.404 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:54:16.404 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:54:16.404 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:54:16.404 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-18 02:54:16.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:54:16.454 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:54:16.524 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:16.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:16.754 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:54:16.754 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:54:16.754 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:54:16.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 02:54:16.794 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:54:16.794 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 02:54:16.794 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 02:54:16.874 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 02:54:16.874 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:16.874 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:54:16.874 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-18 02:54:16.894 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:16.894 -07 000000626 INF: Image SNR check: start
17-03-18 02:54:16.894 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:16.904 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:16.904 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:54:16.914 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=137.27]
17-03-18 02:54:16.914 -07 000000626 INF: Autofocus start
17-03-18 02:54:16.914 -07 000000626 INF: MeasureProfile start
17-03-18 02:54:16.924 -07 000000626 INF: MeasureProfile done
17-03-18 02:54:16.924 -07 000000626 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:54:16.924 -07 000000626 INF: Autofocus finished
17-03-18 02:54:17.104 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:54:17.104 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:54:17.104 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139422534708591. ----------
17-03-18 02:54:17.104 -07 000000610 INF: Cycle	105	Tile	1	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:17.114 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28964, sync = True, waitForSettling = True)
17-03-18 02:54:17.114 -07 000000610 INF: Z Motor: Moving to -0.132589 mm, started at -0.139423 mm, distance = 6.83 um
17-03-18 02:54:17.114 -07 000000610 INF: FPGA: Xmit ZDACW 28964\n [Z Motor]
17-03-18 02:54:17.114 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:54:17.124 -07 000000610 INF: FPGA: 'ZDACW 28964' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:17.124 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:17.124 -07 000000455 INF: FPGA: Recv ZDACR 28964
17-03-18 02:54:17.134 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.134 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:17.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.284 -07 000000462 INF: FPGA: Recv ZSGSRD 29931
17-03-18 02:54:17.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:17.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.294 -07 000000444 INF: FPGA: Recv ZSGSRD 29925
17-03-18 02:54:17.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.304 -07 000000569 INF: FPGA: Recv ZSGSRD 29931
17-03-18 02:54:17.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.314 -07 000000501 INF: FPGA: Recv ZSGSRD 29928
17-03-18 02:54:17.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.324 -07 000000569 INF: FPGA: Recv ZSGSRD 29928
17-03-18 02:54:17.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.334 -07 000000467 INF: FPGA: Recv ZSGSRD 29932
17-03-18 02:54:17.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.344 -07 000000629 INF: FPGA: Recv ZSGSRD 29928
17-03-18 02:54:17.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.354 -07 000000591 INF: FPGA: Recv ZSGSRD 29929
17-03-18 02:54:17.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.364 -07 000000455 INF: FPGA: Recv ZSGSRD 29922
17-03-18 02:54:17.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:17.374 -07 000000569 INF: FPGA: Recv ZSGSRD 29922
17-03-18 02:54:17.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:17.384 -07 000000576 INF: FPGA: Recv ZPIEZORD 25292
17-03-18 02:54:17.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:17.394 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.420 V. Piezo Error = -10.2 V.
17-03-18 02:54:17.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29928 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29928 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29922 (-131.8 uncal um), Max = 29932 (-131.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:54:17.394 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29928, posNoise = 4, negNoise = 6
17-03-18 02:54:17.394 -07 000000610 INF: Z Motor: After move to -0.132589, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:17.394 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:54:17.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:17.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:17.394 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:17.394 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:17.394 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:17.394 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:17.394 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:17.394 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:17.394 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:17.404 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:17.404 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:17.404 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:54:17.404 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:17.404 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:17.424 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:54:17.424 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:54:17.424 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-18 02:54:17.424 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:17.424 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:54:17.424 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:17.434 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:54:17.434 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-18 02:54:17.434 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29141 150\n [Camera]
17-03-18 02:54:17.644 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:18.044 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:18.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:18.044 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:18.044 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:18.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:18.044 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:18.044 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:18.044 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-18 02:54:18.044 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:18.044 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:54:18.234 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29141 784
17-03-18 02:54:18.374 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:18.434 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:54:18.434 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:54:18.434 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:18.444 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-18 02:54:18.444 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:54:18.444 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:18.444 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:18.444 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:54:18.444 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:18.454 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:54:18.574 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:18.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:18.574 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:18.574 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:18.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:18.574 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:18.584 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:18.584 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:54:18.584 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:18.584 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:54:18.764 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:54:18.764 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:18.764 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29141 150' command took 2 ms to send, 1314 ms to get response, and 1326 ms overall
17-03-18 02:54:18.764 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:54:18.764 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132587172989757. ------
17-03-18 02:54:18.774 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:18.774 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13906 mm
17-03-18 02:54:18.774 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:18.774 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:18.774 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:54:18.774 -07 000000455 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-18 02:54:18.774 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 30379, sync = True, waitForSettling = False)
17-03-18 02:54:18.774 -07 000000591 INF: Z Motor: Moving to -0.139066 mm, started at -0.132587 mm, distance = -6.48 um
17-03-18 02:54:18.784 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:18.784 -07 000000591 INF: FPGA: Xmit ZDACW 30379\n [Z Motor]
17-03-18 02:54:18.784 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:54:18.794 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:18.794 -07 000000591 INF: FPGA: 'ZDACW 30379' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:54:18.794 -07 000000569 INF: FPGA: Recv YRDPOS 122698
17-03-18 02:54:18.804 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:54:18.804 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:54:18.804 -07 000000455 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:18.804 -07 000000455 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:18.804 -07 000000455 INF: Y Motor: Moving 1330 steps2
17-03-18 02:54:18.814 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:18.814 -07 000000569 INF: FPGA: Recv ZDACR 30379
17-03-18 02:54:18.824 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:54:18.824 -07 000000591 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:54:18.824 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:18.984 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 02:54:18.984 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:54:18.984 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:18.984 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 398 ms.
17-03-18 02:54:18.984 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:54:18.984 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:18.984 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:18.984 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-18 02:54:18.984 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:18.994 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 02:54:19.004 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:54:19.004 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:54:19.194 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:54:19.194 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:54:19.234 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:19.244 -07 000000444 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:54:19.244 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 02:54:19.244 -07 000000455 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:19.244 -07 000000455 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:54:19.244 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-18 02:54:20.194 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:20.194 -07 000000424 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:54:20.204 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:20.204 -07 000000455 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:20.234 -07 000000455 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:20.234 -07 000000455 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:20.234 -07 000000455 INF: Y Motor: Moved to 60.7329 after 1455 ms (table move)
17-03-18 02:54:20.234 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139066 mm (DAC = 30379)
17-03-18 02:54:20.234 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.244 -07 000000569 INF: FPGA: Recv ZSGSRD 30941
17-03-18 02:54:20.244 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 02:54:20.244 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.244 -07 000000590 INF: FPGA: Recv ZSGSRD 30936
17-03-18 02:54:20.254 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:20.254 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.254 -07 000000462 INF: FPGA: Recv ZSGSRD 30941
17-03-18 02:54:20.264 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:20.264 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.264 -07 000000461 INF: FPGA: Recv ZSGSRD 30937
17-03-18 02:54:20.274 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:20.274 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.274 -07 000000501 INF: FPGA: Recv ZSGSRD 30937
17-03-18 02:54:20.284 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:20.284 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.284 -07 000000576 INF: FPGA: Recv ZSGSRD 30933
17-03-18 02:54:20.294 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:20.294 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.294 -07 000000618 INF: FPGA: Recv ZSGSRD 30936
17-03-18 02:54:20.304 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:20.304 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.304 -07 000000455 INF: FPGA: Recv ZSGSRD 30935
17-03-18 02:54:20.314 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:20.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.314 -07 000000461 INF: FPGA: Recv ZSGSRD 30931
17-03-18 02:54:20.324 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:20.324 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:20.324 -07 000000501 INF: FPGA: Recv ZSGSRD 30945
17-03-18 02:54:20.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:20.334 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:20.334 -07 000000606 INF: FPGA: Recv ZPIEZORD 26645
17-03-18 02:54:20.344 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:20.344 -07 000000561 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.4 V.
17-03-18 02:54:20.344 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30937 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30936 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30931 (-138.2 uncal um), Max = 30945 (-138.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:54:20.344 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30937, posNoise = 8, negNoise = 6
17-03-18 02:54:20.344 -07 000000561 INF: Z Motor: After move to -0.139066, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:20.344 -07 000000561 INF: Z Motor: Settle wait time = 1459 ms, measure time = 105 ms (allowed 150 ms), total time = 1564 ms
17-03-18 02:54:20.344 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:20.394 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:54:20.394 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:20.394 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:20.394 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:20.394 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:20.394 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:20.394 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:54:20.394 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:20.394 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:20.394 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:54:20.404 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:20.404 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:54:20.414 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:54:20.414 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:54:20.414 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:54:20.464 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:54:20.764 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:54:20.764 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:54:20.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:54:20.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) start.
17-03-18 02:54:20.804 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:54:20.804 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:54:20.804 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall
17-03-18 02:54:20.894 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2352550048, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:54:20.894 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:20.894 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:54:20.894 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 02:54:20.904 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.008536,
17-03-18 02:54:20.904 -07 000000444 INF: Autofocus start
17-03-18 02:54:20.904 -07 000000444 INF: MeasureProfile start
17-03-18 02:54:20.914 -07 000000444 INF: MeasureProfile done
17-03-18 02:54:20.914 -07 000000444 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:54:20.914 -07 000000444 INF: Autofocus finished
17-03-18 02:54:20.924 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:20.924 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:20.934 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:54:20.934 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:54:21.134 -07 000000579 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:54:21.134 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:54:21.134 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139069203040794. ----------
17-03-18 02:54:21.134 -07 000000610 INF: Cycle	105	Tile	2	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:21.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28886, sync = True, waitForSettling = True)
17-03-18 02:54:21.144 -07 000000610 INF: Z Motor: Moving to -0.132232 mm, started at -0.139069 mm, distance = 6.84 um
17-03-18 02:54:21.144 -07 000000610 INF: FPGA: Xmit ZDACW 28886\n [Z Motor]
17-03-18 02:54:21.144 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:54:21.154 -07 000000610 INF: FPGA: 'ZDACW 28886' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:21.154 -07 000000455 INF: FPGA: Recv ZDACR 28886
17-03-18 02:54:21.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:21.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.314 -07 000000462 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:54:21.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:21.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.324 -07 000000591 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:54:21.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.334 -07 000000576 INF: FPGA: Recv ZSGSRD 29872
17-03-18 02:54:21.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.344 -07 000000629 INF: FPGA: Recv ZSGSRD 29878
17-03-18 02:54:21.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.354 -07 000000455 INF: FPGA: Recv ZSGSRD 29871
17-03-18 02:54:21.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.364 -07 000000502 INF: FPGA: Recv ZSGSRD 29876
17-03-18 02:54:21.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.374 -07 000000461 INF: FPGA: Recv ZSGSRD 29876
17-03-18 02:54:21.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:21.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.384 -07 000000606 INF: FPGA: Recv ZSGSRD 29872
17-03-18 02:54:21.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.394 -07 000000576 INF: FPGA: Recv ZSGSRD 29874
17-03-18 02:54:21.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:21.404 -07 000000591 INF: FPGA: Recv ZSGSRD 29871
17-03-18 02:54:21.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:21.414 -07 000000626 INF: FPGA: Recv ZPIEZORD 25275
17-03-18 02:54:21.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:21.424 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -10.1 V.
17-03-18 02:54:21.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29874 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29874 (-131.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29871 (-131.4 uncal um), Max = 29878 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:54:21.424 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29874, posNoise = 4, negNoise = 3
17-03-18 02:54:21.424 -07 000000610 INF: Z Motor: After move to -0.132232, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:21.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:54:21.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:21.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:21.424 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:21.424 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:21.424 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:21.424 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:21.424 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:21.424 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:21.424 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:21.424 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:21.424 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:21.424 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:21.434 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:54:21.434 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:21.434 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:21.434 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:21.444 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:54:21.444 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:54:21.444 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:54:21.444 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:54:21.454 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29063 150\n [Camera]
17-03-18 02:54:21.524 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:21.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:21.654 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:22.044 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:22.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:22.054 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:22.054 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:22.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:22.054 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:22.054 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:22.054 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:54:22.054 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:22.054 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 02:54:22.244 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29063 785
17-03-18 02:54:22.394 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:22.444 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 02:54:22.444 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:54:22.444 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:22.444 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:22.454 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:54:22.454 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:54:22.454 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:22.454 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:54:22.454 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:22.454 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:54:22.584 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:22.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:22.584 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:22.584 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:22.584 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1112907760, 0x0, 391868352) start.
17-03-18 02:54:22.584 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:22.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:22.584 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:22.584 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:22.584 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1148330024, 0x0, 418435064) start.
17-03-18 02:54:22.774 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:54:22.774 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:22.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29063 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:54:22.774 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.132950
17-03-18 02:54:22.784 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13295 mm
17-03-18 02:54:22.784 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:22.784 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:54:22.784 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:54:22.784 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:22.784 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 29043, sync = True, waitForSettling = False)
17-03-18 02:54:22.784 -07 000000579 INF: Z Motor: Moving to -0.132950 mm, started at -0.132240 mm, distance = -0.71 um
17-03-18 02:54:22.784 -07 000000629 INF: FPGA: Recv YRDPOS 124382
17-03-18 02:54:22.794 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:54:22.794 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:22.794 -07 000000579 INF: FPGA: Xmit ZDACW 29043\n [Z Motor]
17-03-18 02:54:22.794 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:54:22.794 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:22.794 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:54:22.804 -07 000000579 INF: FPGA: 'ZDACW 29043' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:54:22.804 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:22.804 -07 000000618 INF: FPGA: Recv ZDACR 29043
17-03-18 02:54:22.814 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:22.814 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:22.814 -07 000000579 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 02:54:22.994 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1112907760, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:54:22.994 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:54:22.994 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:22.994 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1148330024, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:54:22.994 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 02:54:22.994 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:22.994 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:22.994 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:54:22.994 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:54:23.004 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-18 02:54:23.184 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:54:23.184 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 392 ms overall
17-03-18 02:54:23.234 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:23.234 -07 000000591 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:54:23.244 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:54:23.244 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:23.244 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:54:23.244 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-18 02:54:24.194 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:24.194 -07 000000430 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:54:24.204 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:24.204 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:24.224 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:24.224 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:24.224 -07 000000502 INF: Y Motor: Moved to 61.5640 after 1445 ms (table move)
17-03-18 02:54:24.234 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132950 mm (DAC = 29043)
17-03-18 02:54:24.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.234 -07 000000501 INF: FPGA: Recv ZSGSRD 29981
17-03-18 02:54:24.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:24.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.244 -07 000000512 INF: FPGA: Recv ZSGSRD 29990
17-03-18 02:54:24.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.254 -07 000000590 INF: FPGA: Recv ZSGSRD 29993
17-03-18 02:54:24.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.264 -07 000000462 INF: FPGA: Recv ZSGSRD 29986
17-03-18 02:54:24.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:24.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.274 -07 000000430 INF: FPGA: Recv ZSGSRD 29977
17-03-18 02:54:24.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.284 -07 000000455 INF: FPGA: Recv ZSGSRD 29981
17-03-18 02:54:24.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.294 -07 000000512 INF: FPGA: Recv ZSGSRD 29983
17-03-18 02:54:24.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.304 -07 000000569 INF: FPGA: Recv ZSGSRD 29987
17-03-18 02:54:24.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.314 -07 000000606 INF: FPGA: Recv ZSGSRD 29981
17-03-18 02:54:24.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.324 -07 000000576 INF: FPGA: Recv ZSGSRD 29991
17-03-18 02:54:24.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.334 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:24.334 -07 000000626 INF: FPGA: Recv ZPIEZORD 25521
17-03-18 02:54:24.344 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.344 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.432 V. Piezo Error = -9.8 V.
17-03-18 02:54:24.344 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29985 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29984 (-132.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29977 (-132.1 uncal um), Max = 29993 (-132.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:54:24.344 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29985, posNoise = 8, negNoise = 8
17-03-18 02:54:24.344 -07 000000610 INF: Z Motor: After move to -0.132950, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:24.344 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 109 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:54:24.344 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:24.394 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 02:54:24.394 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:24.394 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.132953353081837. ----------
17-03-18 02:54:24.394 -07 000000610 INF: Cycle	105	Tile	3	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:24.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28866, sync = True, waitForSettling = True)
17-03-18 02:54:24.394 -07 000000610 INF: Z Motor: Moving to -0.132140 mm, started at -0.132953 mm, distance = 0.81 um
17-03-18 02:54:24.394 -07 000000610 INF: FPGA: Xmit ZDACW 28866\n [Z Motor]
17-03-18 02:54:24.394 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:54:24.404 -07 000000610 INF: FPGA: 'ZDACW 28866' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:24.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:24.404 -07 000000629 INF: FPGA: Recv ZDACR 28866
17-03-18 02:54:24.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:24.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.564 -07 000000512 INF: FPGA: Recv ZSGSRD 29861
17-03-18 02:54:24.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.574 -07 000000424 INF: FPGA: Recv ZSGSRD 29858
17-03-18 02:54:24.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.584 -07 000000444 INF: FPGA: Recv ZSGSRD 29857
17-03-18 02:54:24.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.594 -07 000000461 INF: FPGA: Recv ZSGSRD 29855
17-03-18 02:54:24.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.604 -07 000000455 INF: FPGA: Recv ZSGSRD 29858
17-03-18 02:54:24.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.614 -07 000000501 INF: FPGA: Recv ZSGSRD 29858
17-03-18 02:54:24.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.624 -07 000000561 INF: FPGA: Recv ZSGSRD 29861
17-03-18 02:54:24.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.634 -07 000000502 INF: FPGA: Recv ZSGSRD 29868
17-03-18 02:54:24.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.644 -07 000000606 INF: FPGA: Recv ZSGSRD 29863
17-03-18 02:54:24.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:24.654 -07 000000618 INF: FPGA: Recv ZSGSRD 29854
17-03-18 02:54:24.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.664 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:24.664 -07 000000444 INF: FPGA: Recv ZPIEZORD 25352
17-03-18 02:54:24.674 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:24.674 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.405 V. Piezo Error = -9.9 V.
17-03-18 02:54:24.674 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29859 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29858 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29854 (-131.3 uncal um), Max = 29868 (-131.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:54:24.674 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29859, posNoise = 9, negNoise = 5
17-03-18 02:54:24.674 -07 000000610 INF: Z Motor: After move to -0.132140, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:24.674 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:54:24.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:24.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:24.684 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:24.684 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:24.684 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:24.684 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:24.684 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:24.684 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:24.684 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:24.684 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:24.684 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:24.684 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:24.694 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:24.694 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:24.694 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:54:24.694 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:24.704 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:54:24.704 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:54:24.714 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:54:24.714 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-18 02:54:24.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 29043 150\n [Camera]
17-03-18 02:54:24.914 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:54:25.314 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-18 02:54:25.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-18 02:54:25.314 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:25.314 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:25.314 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-18 02:54:25.314 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-18 02:54:25.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-18 02:54:25.324 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:25.324 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:25.324 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-18 02:54:25.504 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29043 784
17-03-18 02:54:25.654 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:25.704 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:54:25.704 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:54:25.704 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:25.704 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:54:25.704 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:54:25.704 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:25.704 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:25.704 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:54:25.704 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:25.714 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:54:25.844 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:25.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:25.854 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:25.854 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:25.854 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:54:25.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:25.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:25.854 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:25.974 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:25.974 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:54:26.044 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-18 02:54:26.044 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:26.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 29043 150' command took 2 ms to send, 1324 ms to get response, and 1328 ms overall
17-03-18 02:54:26.044 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132543
17-03-18 02:54:26.044 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13254 mm
17-03-18 02:54:26.044 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:26.044 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:54:26.044 -07 000000569 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:54:26.044 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 28954, sync = True, waitForSettling = False)
17-03-18 02:54:26.044 -07 000000444 INF: Z Motor: Moving to -0.132543 mm, started at -0.132144 mm, distance = -0.40 um
17-03-18 02:54:26.044 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:26.054 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:54:26.064 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:26.064 -07 000000569 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:26.064 -07 000000569 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:26.064 -07 000000569 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:54:26.064 -07 000000444 INF: FPGA: Xmit ZDACW 28954\n [Z Motor]
17-03-18 02:54:26.064 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:54:26.074 -07 000000444 INF: FPGA: 'ZDACW 28954' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 02:54:26.074 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:26.074 -07 000000502 INF: FPGA: Recv ZDACR 28954
17-03-18 02:54:26.084 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:26.084 -07 000000444 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 02:54:26.084 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:26.234 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:54:26.234 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:54:26.234 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:26.244 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:26.244 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:54:26.294 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.978563,
17-03-18 02:54:26.354 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:54:26.354 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:54:26.354 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:26.354 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:54:26.364 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-18 02:54:26.454 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:54:26.454 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:54:26.504 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:26.504 -07 000000444 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:54:26.514 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:54:26.514 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:26.514 -07 000000569 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:54:26.514 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-18 02:54:26.524 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:26.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:27.464 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:27.464 -07 000000629 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:54:27.474 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:27.474 -07 000000569 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:27.494 -07 000000569 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:27.494 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:27.494 -07 000000569 INF: Y Motor: Moved to 62.3955 after 1447 ms (table move)
17-03-18 02:54:27.494 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132543 mm (DAC = 28954)
17-03-18 02:54:27.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.504 -07 000000462 INF: FPGA: Recv ZSGSRD 29922
17-03-18 02:54:27.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:54:27.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.504 -07 000000502 INF: FPGA: Recv ZSGSRD 29926
17-03-18 02:54:27.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:27.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.514 -07 000000501 INF: FPGA: Recv ZSGSRD 29913
17-03-18 02:54:27.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.524 -07 000000424 INF: FPGA: Recv ZSGSRD 29924
17-03-18 02:54:27.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.534 -07 000000629 INF: FPGA: Recv ZSGSRD 29926
17-03-18 02:54:27.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.544 -07 000000579 INF: FPGA: Recv ZSGSRD 29926
17-03-18 02:54:27.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.554 -07 000000430 INF: FPGA: Recv ZSGSRD 29920
17-03-18 02:54:27.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.564 -07 000000606 INF: FPGA: Recv ZSGSRD 29920
17-03-18 02:54:27.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.574 -07 000000576 INF: FPGA: Recv ZSGSRD 29914
17-03-18 02:54:27.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.584 -07 000000444 INF: FPGA: Recv ZSGSRD 29928
17-03-18 02:54:27.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:27.594 -07 000000502 INF: FPGA: Recv ZPIEZORD 25434
17-03-18 02:54:27.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.604 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -9.8 V.
17-03-18 02:54:27.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29922 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29923 (-131.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29913 (-131.7 uncal um), Max = 29928 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:54:27.604 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29922, posNoise = 6, negNoise = 9
17-03-18 02:54:27.604 -07 000000610 INF: Z Motor: After move to -0.132543, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:27.604 -07 000000610 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-18 02:54:27.604 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:27.654 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 02:54:27.654 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:27.654 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.132548627716906. ----------
17-03-18 02:54:27.654 -07 000000610 INF: Cycle	105	Tile	4	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:27.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28777, sync = True, waitForSettling = True)
17-03-18 02:54:27.654 -07 000000610 INF: Z Motor: Moving to -0.131733 mm, started at -0.132549 mm, distance = 0.82 um
17-03-18 02:54:27.654 -07 000000610 INF: FPGA: Xmit ZDACW 28777\n [Z Motor]
17-03-18 02:54:27.654 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:54:27.664 -07 000000610 INF: FPGA: 'ZDACW 28777' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:27.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:27.664 -07 000000579 INF: FPGA: Recv ZDACR 28777
17-03-18 02:54:27.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:27.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.824 -07 000000591 INF: FPGA: Recv ZSGSRD 29797
17-03-18 02:54:27.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:27.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.834 -07 000000461 INF: FPGA: Recv ZSGSRD 29798
17-03-18 02:54:27.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.844 -07 000000576 INF: FPGA: Recv ZSGSRD 29803
17-03-18 02:54:27.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.854 -07 000000467 INF: FPGA: Recv ZSGSRD 29795
17-03-18 02:54:27.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.864 -07 000000561 INF: FPGA: Recv ZSGSRD 29795
17-03-18 02:54:27.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.874 -07 000000618 INF: FPGA: Recv ZSGSRD 29796
17-03-18 02:54:27.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.884 -07 000000430 INF: FPGA: Recv ZSGSRD 29796
17-03-18 02:54:27.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29794
17-03-18 02:54:27.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.904 -07 000000591 INF: FPGA: Recv ZSGSRD 29793
17-03-18 02:54:27.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:27.914 -07 000000569 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:54:27.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:27.924 -07 000000576 INF: FPGA: Recv ZPIEZORD 25291
17-03-18 02:54:27.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:27.934 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.9 V.
17-03-18 02:54:27.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29796 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29796 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29790 (-130.9 uncal um), Max = 29803 (-131.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:54:27.934 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29796, posNoise = 7, negNoise = 6
17-03-18 02:54:27.934 -07 000000610 INF: Z Motor: After move to -0.131733, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:27.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:54:27.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:27.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:27.934 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:27.934 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:27.934 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:27.934 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:27.934 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:27.934 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:27.934 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:27.934 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:27.934 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:27.934 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:27.944 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:27.944 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:27.944 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:27.944 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:27.954 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:54:27.954 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:54:27.954 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:54:27.954 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:54:27.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28954 150\n [Camera]
17-03-18 02:54:28.164 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:28.554 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:28.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:28.564 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:28.564 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:28.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:28.564 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:28.564 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:28.564 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:54:28.564 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:28.564 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:54:28.754 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28954 784
17-03-18 02:54:28.904 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:28.934 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 02:54:28.934 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:54:28.934 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:28.944 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:28.944 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:54:28.944 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:54:28.944 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:28.944 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:28.944 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:54:28.944 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:54:29.094 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:29.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:29.094 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:29.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:29.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:29.094 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:29.214 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:29.214 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:54:29.214 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:29.214 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:54:29.284 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:54:29.284 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:29.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28954 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-18 02:54:29.284 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132410
17-03-18 02:54:29.284 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13241 mm
17-03-18 02:54:29.284 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:29.294 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:54:29.294 -07 000000579 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:54:29.294 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:29.294 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28925, sync = True, waitForSettling = False)
17-03-18 02:54:29.294 -07 000000576 INF: Z Motor: Moving to -0.132410 mm, started at -0.131739 mm, distance = -0.67 um
17-03-18 02:54:29.294 -07 000000591 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:54:29.304 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:29.304 -07 000000579 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:29.304 -07 000000576 INF: FPGA: Xmit ZDACW 28925\n [Z Motor]
17-03-18 02:54:29.304 -07 000000579 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:29.304 -07 000000579 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:54:29.304 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:54:29.314 -07 000000576 INF: FPGA: 'ZDACW 28925' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:54:29.314 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:29.314 -07 000000618 INF: FPGA: Recv ZDACR 28925
17-03-18 02:54:29.324 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:29.324 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:29.324 -07 000000576 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 02:54:29.594 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:54:29.594 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:54:29.594 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:29.594 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:54:29.594 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:54:29.594 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:29.604 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:54:29.604 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-18 02:54:29.604 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:54:29.604 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-18 02:54:29.694 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:54:29.694 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:54:29.744 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:29.744 -07 000000501 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:54:29.754 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:54:29.754 -07 000000579 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:29.754 -07 000000579 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 02:54:29.754 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-18 02:54:30.704 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:30.704 -07 000000430 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:54:30.714 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.714 -07 000000579 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:30.734 -07 000000579 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:30.734 -07 000000579 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:30.734 -07 000000579 INF: Y Motor: Moved to 63.2241 after 1447 ms (table move)
17-03-18 02:54:30.744 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132410 mm (DAC = 28925)
17-03-18 02:54:30.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.744 -07 000000444 INF: FPGA: Recv ZSGSRD 29903
17-03-18 02:54:30.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:30.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.754 -07 000000424 INF: FPGA: Recv ZSGSRD 29902
17-03-18 02:54:30.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.764 -07 000000512 INF: FPGA: Recv ZSGSRD 29906
17-03-18 02:54:30.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.774 -07 000000430 INF: FPGA: Recv ZSGSRD 29902
17-03-18 02:54:30.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.784 -07 000000626 INF: FPGA: Recv ZSGSRD 29904
17-03-18 02:54:30.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.794 -07 000000461 INF: FPGA: Recv ZSGSRD 29904
17-03-18 02:54:30.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.804 -07 000000462 INF: FPGA: Recv ZSGSRD 29902
17-03-18 02:54:30.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.814 -07 000000561 INF: FPGA: Recv ZSGSRD 29900
17-03-18 02:54:30.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.824 -07 000000618 INF: FPGA: Recv ZSGSRD 29897
17-03-18 02:54:30.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:30.834 -07 000000502 INF: FPGA: Recv ZSGSRD 29902
17-03-18 02:54:30.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.844 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:30.844 -07 000000579 INF: FPGA: Recv ZPIEZORD 25432
17-03-18 02:54:30.854 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.854 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.8 V.
17-03-18 02:54:30.854 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29902 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29902 (-131.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29897 (-131.6 uncal um), Max = 29906 (-131.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:54:30.854 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29902, posNoise = 4, negNoise = 5
17-03-18 02:54:30.854 -07 000000610 INF: Z Motor: After move to -0.132410, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:30.854 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:54:30.854 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:30.894 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 02:54:30.894 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:30.894 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.132420143474071. ----------
17-03-18 02:54:30.894 -07 000000610 INF: Cycle	105	Tile	5	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:30.894 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28748, sync = True, waitForSettling = True)
17-03-18 02:54:30.894 -07 000000610 INF: Z Motor: Moving to -0.131600 mm, started at -0.132420 mm, distance = 0.82 um
17-03-18 02:54:30.894 -07 000000610 INF: FPGA: Xmit ZDACW 28748\n [Z Motor]
17-03-18 02:54:30.894 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:54:30.904 -07 000000610 INF: FPGA: 'ZDACW 28748' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:30.904 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:30.904 -07 000000455 INF: FPGA: Recv ZDACR 28748
17-03-18 02:54:30.914 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:30.914 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:31.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.064 -07 000000618 INF: FPGA: Recv ZSGSRD 29771
17-03-18 02:54:31.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:31.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.074 -07 000000502 INF: FPGA: Recv ZSGSRD 29780
17-03-18 02:54:31.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.084 -07 000000501 INF: FPGA: Recv ZSGSRD 29778
17-03-18 02:54:31.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.094 -07 000000591 INF: FPGA: Recv ZSGSRD 29772
17-03-18 02:54:31.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.104 -07 000000629 INF: FPGA: Recv ZSGSRD 29774
17-03-18 02:54:31.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.114 -07 000000461 INF: FPGA: Recv ZSGSRD 29772
17-03-18 02:54:31.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.124 -07 000000430 INF: FPGA: Recv ZSGSRD 29773
17-03-18 02:54:31.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.134 -07 000000455 INF: FPGA: Recv ZSGSRD 29773
17-03-18 02:54:31.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.144 -07 000000618 INF: FPGA: Recv ZSGSRD 29774
17-03-18 02:54:31.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:31.154 -07 000000569 INF: FPGA: Recv ZSGSRD 29781
17-03-18 02:54:31.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:31.164 -07 000000424 INF: FPGA: Recv ZPIEZORD 25288
17-03-18 02:54:31.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:31.174 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.8 V.
17-03-18 02:54:31.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29775 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29774 (-130.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29771 (-130.8 uncal um), Max = 29781 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:54:31.174 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29775, posNoise = 6, negNoise = 4
17-03-18 02:54:31.174 -07 000000610 INF: Z Motor: After move to -0.131600, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:31.174 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:54:31.174 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:31.174 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:31.174 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:31.174 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:31.174 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:31.174 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:31.174 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:31.174 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:31.174 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:31.174 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:31.174 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:31.174 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:31.184 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:31.184 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:31.184 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:54:31.184 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:31.194 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:54:31.194 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:54:31.194 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:54:31.194 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:54:31.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28925 150\n [Camera]
17-03-18 02:54:31.404 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:31.524 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:31.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:31.664 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.962185,
17-03-18 02:54:31.794 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:31.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:31.804 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:31.804 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:31.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:31.804 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:31.804 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:31.804 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:54:31.814 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:31.814 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:54:31.994 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28925 784
17-03-18 02:54:32.144 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:32.174 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 367 ms.
17-03-18 02:54:32.174 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-18 02:54:32.174 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:32.184 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:54:32.184 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:54:32.184 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:32.184 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:32.184 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:32.184 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:54:32.184 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:54:32.334 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:32.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:32.334 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:32.334 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:32.334 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:32.334 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:32.334 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:32.344 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-18 02:54:32.344 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:32.344 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:54:32.524 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:54:32.524 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:32.524 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28925 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-18 02:54:32.524 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:54:32.524 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131604268532067. ------
17-03-18 02:54:32.534 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:32.534 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13803 mm
17-03-18 02:54:32.534 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:32.534 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:32.534 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:54:32.544 -07 000000430 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:54:32.544 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:32.544 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30152, sync = True, waitForSettling = False)
17-03-18 02:54:32.544 -07 000000502 INF: Z Motor: Moving to -0.138027 mm, started at -0.131604 mm, distance = -6.42 um
17-03-18 02:54:32.544 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:32.544 -07 000000461 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:54:32.554 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:32.554 -07 000000430 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:32.554 -07 000000430 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:32.554 -07 000000430 INF: Y Motor: Moving 1342 steps-17
17-03-18 02:54:32.554 -07 000000502 INF: FPGA: Xmit ZDACW 30152\n [Z Motor]
17-03-18 02:54:32.554 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:54:32.564 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:54:32.564 -07 000000502 INF: FPGA: 'ZDACW 30152' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:54:32.574 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:32.584 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:32.584 -07 000000501 INF: FPGA: Recv ZDACR 30152
17-03-18 02:54:32.594 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:54:32.594 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 02:54:32.724 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:54:32.724 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:54:32.724 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:32.724 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:54:32.724 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:54:32.724 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:32.724 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:54:32.724 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:54:32.724 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:32.734 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:54:32.764 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:54:32.764 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 02:54:32.944 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:54:32.944 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:54:32.994 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:32.994 -07 000000590 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:54:33.004 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:33.004 -07 000000430 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:33.004 -07 000000430 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 02:54:33.004 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec
17-03-18 02:54:33.954 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:33.954 -07 000000579 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:54:33.964 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:33.964 -07 000000430 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:33.984 -07 000000430 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:33.984 -07 000000430 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:33.984 -07 000000430 INF: Y Motor: Moved to 64.0571 after 1441 ms (table move)
17-03-18 02:54:33.984 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138027 mm (DAC = 30152)
17-03-18 02:54:33.984 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:33.994 -07 000000424 INF: FPGA: Recv ZSGSRD 30782
17-03-18 02:54:33.994 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:54:33.994 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:33.994 -07 000000444 INF: FPGA: Recv ZSGSRD 30779
17-03-18 02:54:34.004 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:34.004 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:34.004 -07 000000606 INF: FPGA: Recv ZSGSRD 30772
17-03-18 02:54:34.014 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.014 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:34.014 -07 000000591 INF: FPGA: Recv ZSGSRD 30775
17-03-18 02:54:34.024 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.024 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:34.024 -07 000000618 INF: FPGA: Recv ZSGSRD 30784
17-03-18 02:54:34.034 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.034 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:34.034 -07 000000569 INF: FPGA: Recv ZSGSRD 30778
17-03-18 02:54:34.044 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.044 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:34.044 -07 000000501 INF: FPGA: Recv ZSGSRD 30776
17-03-18 02:54:34.054 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.054 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:34.054 -07 000000561 INF: FPGA: Recv ZSGSRD 30770
17-03-18 02:54:34.064 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.064 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:34.064 -07 000000576 INF: FPGA: Recv ZSGSRD 30775
17-03-18 02:54:34.074 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.074 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:34.074 -07 000000626 INF: FPGA: Recv ZSGSRD 30776
17-03-18 02:54:34.084 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.084 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:34.084 -07 000000606 INF: FPGA: Recv ZPIEZORD 26576
17-03-18 02:54:34.094 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.094 -07 000000455 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -9.2 V.
17-03-18 02:54:34.094 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30777 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30770 (-137.2 uncal um), Max = 30784 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:54:34.094 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30777, posNoise = 7, negNoise = 7
17-03-18 02:54:34.094 -07 000000455 INF: Z Motor: After move to -0.138027, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:34.094 -07 000000455 INF: Z Motor: Settle wait time = 1446 ms, measure time = 101 ms (allowed 150 ms), total time = 1547 ms
17-03-18 02:54:34.094 -07 000000455 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:34.144 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:54:34.144 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:34.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:34.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:34.144 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:34.144 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:54:34.144 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:34.144 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:34.144 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:54:34.144 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:54:34.154 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:54:34.154 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:54:34.164 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:54:34.164 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:54:34.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:54:34.214 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:54:34.514 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:54:34.514 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:54:34.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:54:34.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 02:54:34.554 -07 000000618 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:54:34.554 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:54:34.554 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:54:34.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:54:34.644 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:34.644 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:54:34.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:54:34.654 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:34.654 -07 000000626 INF: Autofocus start
17-03-18 02:54:34.654 -07 000000626 INF: MeasureProfile start
17-03-18 02:54:34.654 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:34.664 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:34.664 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:54:34.664 -07 000000626 INF: MeasureProfile done
17-03-18 02:54:34.664 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:54:34.664 -07 000000626 INF: Autofocus finished
17-03-18 02:54:34.864 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:54:34.864 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:54:34.864 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138041329098112. ----------
17-03-18 02:54:34.864 -07 000000610 INF: Cycle	105	Tile	6	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:34.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28676, sync = True, waitForSettling = True)
17-03-18 02:54:34.874 -07 000000610 INF: Z Motor: Moving to -0.131270 mm, started at -0.138041 mm, distance = 6.77 um
17-03-18 02:54:34.874 -07 000000610 INF: FPGA: Xmit ZDACW 28676\n [Z Motor]
17-03-18 02:54:34.874 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:54:34.884 -07 000000610 INF: FPGA: 'ZDACW 28676' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:34.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:34.884 -07 000000462 INF: FPGA: Recv ZDACR 28676
17-03-18 02:54:34.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:34.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:35.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.044 -07 000000512 INF: FPGA: Recv ZSGSRD 29723
17-03-18 02:54:35.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:35.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.054 -07 000000501 INF: FPGA: Recv ZSGSRD 29734
17-03-18 02:54:35.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.064 -07 000000502 INF: FPGA: Recv ZSGSRD 29724
17-03-18 02:54:35.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.074 -07 000000590 INF: FPGA: Recv ZSGSRD 29722
17-03-18 02:54:35.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.084 -07 000000455 INF: FPGA: Recv ZSGSRD 29720
17-03-18 02:54:35.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.094 -07 000000569 INF: FPGA: Recv ZSGSRD 29723
17-03-18 02:54:35.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.104 -07 000000629 INF: FPGA: Recv ZSGSRD 29721
17-03-18 02:54:35.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.114 -07 000000467 INF: FPGA: Recv ZSGSRD 29723
17-03-18 02:54:35.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.124 -07 000000424 INF: FPGA: Recv ZSGSRD 29728
17-03-18 02:54:35.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:35.134 -07 000000606 INF: FPGA: Recv ZSGSRD 29724
17-03-18 02:54:35.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:35.144 -07 000000569 INF: FPGA: Recv ZPIEZORD 25195
17-03-18 02:54:35.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:35.154 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.9 V.
17-03-18 02:54:35.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29724 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29723 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29720 (-130.5 uncal um), Max = 29734 (-130.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:54:35.154 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29724, posNoise = 10, negNoise = 4
17-03-18 02:54:35.154 -07 000000610 INF: Z Motor: After move to -0.131270, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:35.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:54:35.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:35.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:35.154 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:35.154 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:35.154 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:35.154 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:35.154 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:35.154 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:35.154 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:35.154 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:35.154 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:35.154 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:35.164 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:54:35.164 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:35.164 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:35.164 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:35.164 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:54:35.164 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:54:35.174 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:54:35.174 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:54:35.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28853 150\n [Camera]
17-03-18 02:54:35.374 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:35.774 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:35.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:35.774 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:35.774 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:35.774 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:35.774 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:35.774 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:35.784 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:35.784 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:54:35.784 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) start.
17-03-18 02:54:35.964 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28853 784
17-03-18 02:54:36.114 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:36.154 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:54:36.154 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:54:36.154 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:36.154 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:36.164 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2336209168, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:54:36.164 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:54:36.164 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:36.164 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:54:36.164 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:36.164 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:54:36.304 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:36.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:36.304 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:36.304 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:36.304 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:36.304 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:36.304 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1112907760, 0x0, 391868352) start.
17-03-18 02:54:36.314 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:36.314 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:36.314 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148330024, 0x0, 418435064) start.
17-03-18 02:54:36.494 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:54:36.494 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:36.494 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28853 150' command took 2 ms to send, 1318 ms to get response, and 1325 ms overall
17-03-18 02:54:36.494 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.131884
17-03-18 02:54:36.504 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13188 mm
17-03-18 02:54:36.504 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:36.504 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:54:36.504 -07 000000430 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:54:36.504 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28810, sync = True, waitForSettling = False)
17-03-18 02:54:36.504 -07 000000569 INF: Z Motor: Moving to -0.131884 mm, started at -0.131277 mm, distance = -0.61 um
17-03-18 02:54:36.504 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:36.624 -07 000000569 INF: FPGA: Xmit ZDACW 28810\n [Z Motor]
17-03-18 02:54:36.624 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:54:36.624 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:36.624 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-18 02:54:36.624 -07 000000430 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:36.624 -07 000000430 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:36.624 -07 000000430 INF: Y Motor: Moving 1337 steps-11
17-03-18 02:54:36.624 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:36.624 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:54:36.634 -07 000000569 INF: FPGA: 'ZDACW 28810' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-18 02:54:36.634 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:36.634 -07 000000576 INF: FPGA: Recv ZDACR 28810
17-03-18 02:54:36.644 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:36.644 -07 000000569 INF: Z Motor: MoveAbsStepped took 136 ms (did NOT wait for settling yet))
17-03-18 02:54:36.644 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:36.694 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148330024, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:54:36.694 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:54:36.694 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:36.694 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1112907760, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:54:36.694 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:54:36.694 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:36.694 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:36.694 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:36.694 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:54:36.704 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:54:37.024 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:54:37.024 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 370 ms to get response, and 394 ms overall
17-03-18 02:54:37.034 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.001704,
17-03-18 02:54:37.074 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:37.074 -07 000000626 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:54:37.084 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:37.084 -07 000000430 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:37.084 -07 000000430 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:54:37.084 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.835 mm, average velocity = 2.121 mm/sec
17-03-18 02:54:38.034 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:38.034 -07 000000444 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:54:38.044 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:38.044 -07 000000430 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:38.064 -07 000000430 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:38.064 -07 000000430 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:38.064 -07 000000430 INF: Y Motor: Moved to 64.8789 after 1565 ms (table move)
17-03-18 02:54:38.074 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131884 mm (DAC = 28810)
17-03-18 02:54:38.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.074 -07 000000629 INF: FPGA: Recv ZSGSRD 29827
17-03-18 02:54:38.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:38.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.084 -07 000000430 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:54:38.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.094 -07 000000501 INF: FPGA: Recv ZSGSRD 29813
17-03-18 02:54:38.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.104 -07 000000579 INF: FPGA: Recv ZSGSRD 29818
17-03-18 02:54:38.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.114 -07 000000618 INF: FPGA: Recv ZSGSRD 29809
17-03-18 02:54:38.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.124 -07 000000576 INF: FPGA: Recv ZSGSRD 29822
17-03-18 02:54:38.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.134 -07 000000455 INF: FPGA: Recv ZSGSRD 29825
17-03-18 02:54:38.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.144 -07 000000462 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:54:38.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.154 -07 000000461 INF: FPGA: Recv ZSGSRD 29821
17-03-18 02:54:38.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.164 -07 000000561 INF: FPGA: Recv ZSGSRD 29820
17-03-18 02:54:38.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:38.174 -07 000000629 INF: FPGA: Recv ZPIEZORD 25336
17-03-18 02:54:38.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.184 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -9.8 V.
17-03-18 02:54:38.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29818 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29819 (-131.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29809 (-131.0 uncal um), Max = 29827 (-131.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:54:38.184 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29818, posNoise = 9, negNoise = 9
17-03-18 02:54:38.184 -07 000000610 INF: Z Motor: After move to -0.131884, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:38.184 -07 000000610 INF: Z Motor: Settle wait time = 1567 ms, measure time = 110 ms (allowed 150 ms), total time = 1677 ms
17-03-18 02:54:38.184 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:38.224 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1719 ms
17-03-18 02:54:38.224 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:38.224 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.131880509654163. ----------
17-03-18 02:54:38.224 -07 000000610 INF: Cycle	105	Tile	7	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:38.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28633, sync = True, waitForSettling = True)
17-03-18 02:54:38.224 -07 000000610 INF: Z Motor: Moving to -0.131073 mm, started at -0.131881 mm, distance = 0.81 um
17-03-18 02:54:38.224 -07 000000610 INF: FPGA: Xmit ZDACW 28633\n [Z Motor]
17-03-18 02:54:38.224 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:54:38.234 -07 000000610 INF: FPGA: 'ZDACW 28633' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:54:38.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:38.234 -07 000000502 INF: FPGA: Recv ZDACR 28633
17-03-18 02:54:38.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:38.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.394 -07 000000629 INF: FPGA: Recv ZSGSRD 29694
17-03-18 02:54:38.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:38.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.404 -07 000000430 INF: FPGA: Recv ZSGSRD 29695
17-03-18 02:54:38.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.414 -07 000000512 INF: FPGA: Recv ZSGSRD 29691
17-03-18 02:54:38.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29698
17-03-18 02:54:38.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.434 -07 000000590 INF: FPGA: Recv ZSGSRD 29693
17-03-18 02:54:38.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.444 -07 000000606 INF: FPGA: Recv ZSGSRD 29689
17-03-18 02:54:38.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.454 -07 000000430 INF: FPGA: Recv ZSGSRD 29700
17-03-18 02:54:38.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.464 -07 000000618 INF: FPGA: Recv ZSGSRD 29695
17-03-18 02:54:38.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.474 -07 000000626 INF: FPGA: Recv ZSGSRD 29695
17-03-18 02:54:38.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:38.484 -07 000000561 INF: FPGA: Recv ZSGSRD 29690
17-03-18 02:54:38.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:38.494 -07 000000629 INF: FPGA: Recv ZPIEZORD 25152
17-03-18 02:54:38.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:38.504 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -10.0 V.
17-03-18 02:54:38.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29694 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29694 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29689 (-130.3 uncal um), Max = 29700 (-130.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:54:38.504 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29694, posNoise = 6, negNoise = 5
17-03-18 02:54:38.504 -07 000000610 INF: Z Motor: After move to -0.131073, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:38.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:54:38.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:38.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:38.504 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:38.504 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:38.504 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:38.504 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:38.504 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:38.504 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:38.504 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:38.504 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:38.504 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:38.504 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:38.514 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:54:38.514 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:38.514 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:38.514 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:38.524 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:54:38.524 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:54:38.524 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:54:38.524 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:54:38.524 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28810 150\n [Camera]
17-03-18 02:54:38.724 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:39.124 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:39.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:39.124 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:39.124 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:39.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:39.134 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:39.134 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:54:39.134 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:39.134 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:39.134 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:54:39.324 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28810 784
17-03-18 02:54:39.464 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:39.504 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:54:39.504 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:54:39.504 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:39.504 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:54:39.504 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:54:39.504 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:39.504 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:39.504 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:54:39.514 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:39.514 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:54:39.664 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:39.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:39.664 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:39.664 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:39.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:39.664 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:39.664 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:39.664 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:54:39.664 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:39.664 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:54:39.854 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:54:39.854 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:39.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28810 150' command took 2 ms to send, 1322 ms to get response, and 1325 ms overall
17-03-18 02:54:39.854 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131711
17-03-18 02:54:39.854 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13171 mm
17-03-18 02:54:39.854 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:39.854 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:54:39.854 -07 000000579 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:54:39.854 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28772, sync = True, waitForSettling = False)
17-03-18 02:54:39.854 -07 000000576 INF: Z Motor: Moving to -0.131710 mm, started at -0.131084 mm, distance = -0.63 um
17-03-18 02:54:39.854 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:39.854 -07 000000618 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:54:39.864 -07 000000576 INF: FPGA: Xmit ZDACW 28772\n [Z Motor]
17-03-18 02:54:39.864 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:54:39.864 -07 000000579 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:39.864 -07 000000579 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:39.864 -07 000000579 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:54:39.864 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:54:39.874 -07 000000576 INF: FPGA: 'ZDACW 28772' command took 2 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:54:39.874 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:39.874 -07 000000501 INF: FPGA: Recv ZDACR 28772
17-03-18 02:54:39.884 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:39.884 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:39.884 -07 000000576 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 02:54:40.044 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:54:40.054 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:54:40.054 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:40.054 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:54:40.054 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:54:40.054 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:40.054 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:40.054 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:54:40.054 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:40.064 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:54:40.254 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:54:40.254 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:54:40.304 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:40.304 -07 000000444 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:54:40.314 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:54:40.314 -07 000000579 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:40.314 -07 000000579 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:54:40.314 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-18 02:54:41.264 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:41.264 -07 000000424 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:54:41.274 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:41.274 -07 000000579 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:41.304 -07 000000579 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:41.304 -07 000000579 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:54:41.304 -07 000000579 INF: Y Motor: Moved to 65.7144 after 1445 ms (table move)
17-03-18 02:54:41.304 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131710 mm (DAC = 28772)
17-03-18 02:54:41.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.304 -07 000000502 INF: FPGA: Recv ZSGSRD 29792
17-03-18 02:54:41.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:54:41.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.314 -07 000000501 INF: FPGA: Recv ZSGSRD 29795
17-03-18 02:54:41.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.324 -07 000000430 INF: FPGA: Recv ZSGSRD 29793
17-03-18 02:54:41.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.334 -07 000000462 INF: FPGA: Recv ZSGSRD 29800
17-03-18 02:54:41.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.344 -07 000000512 INF: FPGA: Recv ZSGSRD 29793
17-03-18 02:54:41.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.354 -07 000000569 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:54:41.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.364 -07 000000590 INF: FPGA: Recv ZSGSRD 29792
17-03-18 02:54:41.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.374 -07 000000618 INF: FPGA: Recv ZSGSRD 29789
17-03-18 02:54:41.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.384 -07 000000591 INF: FPGA: Recv ZSGSRD 29789
17-03-18 02:54:41.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.394 -07 000000590 INF: FPGA: Recv ZSGSRD 29799
17-03-18 02:54:41.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:41.404 -07 000000502 INF: FPGA: Recv ZPIEZORD 25315
17-03-18 02:54:41.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.414 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.8 V.
17-03-18 02:54:41.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29793 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29792 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29789 (-130.9 uncal um), Max = 29800 (-131.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:54:41.414 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29793, posNoise = 7, negNoise = 4
17-03-18 02:54:41.414 -07 000000610 INF: Z Motor: After move to -0.131710, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:41.414 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 105 ms (allowed 150 ms), total time = 1553 ms
17-03-18 02:54:41.414 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:41.464 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 02:54:41.464 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:41.464 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.131719904350619. ----------
17-03-18 02:54:41.464 -07 000000610 INF: Cycle	105	Tile	8	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:41.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28595, sync = True, waitForSettling = True)
17-03-18 02:54:41.464 -07 000000610 INF: Z Motor: Moving to -0.130900 mm, started at -0.131720 mm, distance = 0.82 um
17-03-18 02:54:41.464 -07 000000610 INF: FPGA: Xmit ZDACW 28595\n [Z Motor]
17-03-18 02:54:41.464 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:54:41.474 -07 000000610 INF: FPGA: 'ZDACW 28595' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:54:41.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:41.474 -07 000000606 INF: FPGA: Recv ZDACR 28595
17-03-18 02:54:41.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:41.524 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:41.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:41.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.634 -07 000000444 INF: FPGA: Recv ZSGSRD 29670
17-03-18 02:54:41.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.644 -07 000000455 INF: FPGA: Recv ZSGSRD 29664
17-03-18 02:54:41.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.654 -07 000000502 INF: FPGA: Recv ZSGSRD 29676
17-03-18 02:54:41.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.664 -07 000000590 INF: FPGA: Recv ZSGSRD 29665
17-03-18 02:54:41.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.674 -07 000000461 INF: FPGA: Recv ZSGSRD 29667
17-03-18 02:54:41.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.684 -07 000000444 INF: FPGA: Recv ZSGSRD 29667
17-03-18 02:54:41.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.694 -07 000000606 INF: FPGA: Recv ZSGSRD 29666
17-03-18 02:54:41.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.704 -07 000000618 INF: FPGA: Recv ZSGSRD 29666
17-03-18 02:54:41.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.714 -07 000000590 INF: FPGA: Recv ZSGSRD 29667
17-03-18 02:54:41.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:41.724 -07 000000461 INF: FPGA: Recv ZSGSRD 29669
17-03-18 02:54:41.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:41.734 -07 000000569 INF: FPGA: Recv ZPIEZORD 25111
17-03-18 02:54:41.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:41.744 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -10.0 V.
17-03-18 02:54:41.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29668 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29667 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29664 (-130.1 uncal um), Max = 29676 (-130.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:54:41.744 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29668, posNoise = 8, negNoise = 4
17-03-18 02:54:41.744 -07 000000610 INF: Z Motor: After move to -0.130900, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:41.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:54:41.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:41.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:41.744 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:41.744 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:41.744 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:41.744 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:41.744 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:41.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:41.744 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:54:41.744 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:41.744 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:41.744 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:41.754 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:41.754 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:41.754 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:54:41.754 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:41.764 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:54:41.764 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:54:41.764 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:54:41.764 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:54:41.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28772 150\n [Camera]
17-03-18 02:54:41.964 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:42.364 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:42.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:42.374 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:42.374 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:42.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:42.374 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:42.374 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:42.374 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:54:42.374 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:42.374 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:54:42.524 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.027603,
17-03-18 02:54:42.564 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28772 784
17-03-18 02:54:42.714 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:42.754 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:54:42.754 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:54:42.754 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:42.754 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:54:42.754 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:54:42.754 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:42.754 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:54:42.754 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:54:42.754 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:54:42.764 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:54:42.904 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:42.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:42.904 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:42.904 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:42.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:42.904 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:42.904 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:42.904 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:54:42.914 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:42.914 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:54:43.094 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:54:43.094 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:43.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28772 150' command took 2 ms to send, 1315 ms to get response, and 1326 ms overall
17-03-18 02:54:43.094 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131236
17-03-18 02:54:43.094 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13124 mm
17-03-18 02:54:43.094 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:43.104 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:54:43.104 -07 000000579 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:54:43.104 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:43.104 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28669, sync = True, waitForSettling = False)
17-03-18 02:54:43.104 -07 000000424 INF: Z Motor: Moving to -0.131238 mm, started at -0.130917 mm, distance = -0.32 um
17-03-18 02:54:43.104 -07 000000461 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:54:43.114 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:43.114 -07 000000579 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:43.114 -07 000000579 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:43.114 -07 000000579 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:54:43.114 -07 000000424 INF: FPGA: Xmit ZDACW 28669\n [Z Motor]
17-03-18 02:54:43.114 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:54:43.124 -07 000000424 INF: FPGA: 'ZDACW 28669' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:54:43.124 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:43.134 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:43.134 -07 000000502 INF: FPGA: Recv ZDACR 28669
17-03-18 02:54:43.144 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:54:43.144 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-18 02:54:43.284 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:54:43.284 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:54:43.284 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:43.294 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:54:43.294 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:54:43.294 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:43.294 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:43.294 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:43.294 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:54:43.294 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:54:43.494 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:54:43.494 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:54:43.544 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:43.544 -07 000000461 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:54:43.554 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:43.554 -07 000000579 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:43.554 -07 000000579 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:54:43.554 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-18 02:54:44.504 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:44.504 -07 000000444 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:54:44.514 -07 000000579 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:44.514 -07 000000579 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:44.534 -07 000000579 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:44.534 -07 000000579 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:44.534 -07 000000579 INF: Y Motor: Moved to 66.5391 after 1438 ms (table move)
17-03-18 02:54:44.544 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131238 mm (DAC = 28669)
17-03-18 02:54:44.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.544 -07 000000576 INF: FPGA: Recv ZSGSRD 29716
17-03-18 02:54:44.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:44.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.554 -07 000000461 INF: FPGA: Recv ZSGSRD 29718
17-03-18 02:54:44.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.564 -07 000000502 INF: FPGA: Recv ZSGSRD 29721
17-03-18 02:54:44.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.574 -07 000000512 INF: FPGA: Recv ZSGSRD 29722
17-03-18 02:54:44.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.584 -07 000000626 INF: FPGA: Recv ZSGSRD 29719
17-03-18 02:54:44.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.594 -07 000000576 INF: FPGA: Recv ZSGSRD 29719
17-03-18 02:54:44.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.604 -07 000000561 INF: FPGA: Recv ZSGSRD 29717
17-03-18 02:54:44.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.614 -07 000000502 INF: FPGA: Recv ZSGSRD 29712
17-03-18 02:54:44.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.624 -07 000000606 INF: FPGA: Recv ZSGSRD 29718
17-03-18 02:54:44.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.634 -07 000000579 INF: FPGA: Recv ZSGSRD 29718
17-03-18 02:54:44.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:44.644 -07 000000569 INF: FPGA: Recv ZPIEZORD 25225
17-03-18 02:54:44.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.654 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.375 V. Piezo Error = -9.9 V.
17-03-18 02:54:44.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29718 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29718 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29712 (-130.4 uncal um), Max = 29722 (-130.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:54:44.654 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29718, posNoise = 4, negNoise = 6
17-03-18 02:54:44.654 -07 000000610 INF: Z Motor: After move to -0.131238, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:44.654 -07 000000610 INF: Z Motor: Settle wait time = 1441 ms, measure time = 108 ms (allowed 150 ms), total time = 1549 ms
17-03-18 02:54:44.654 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:44.704 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 02:54:44.704 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:44.704 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.131238088439987. ----------
17-03-18 02:54:44.704 -07 000000610 INF: Cycle	105	Tile	9	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:44.704 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28492, sync = True, waitForSettling = True)
17-03-18 02:54:44.704 -07 000000610 INF: Z Motor: Moving to -0.130428 mm, started at -0.131238 mm, distance = 0.81 um
17-03-18 02:54:44.704 -07 000000610 INF: FPGA: Xmit ZDACW 28492\n [Z Motor]
17-03-18 02:54:44.704 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:54:44.714 -07 000000610 INF: FPGA: 'ZDACW 28492' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:54:44.714 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:44.714 -07 000000502 INF: FPGA: Recv ZDACR 28492
17-03-18 02:54:44.724 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.724 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:44.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.874 -07 000000576 INF: FPGA: Recv ZSGSRD 29595
17-03-18 02:54:44.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:44.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.884 -07 000000579 INF: FPGA: Recv ZSGSRD 29602
17-03-18 02:54:44.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.894 -07 000000618 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:54:44.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.904 -07 000000512 INF: FPGA: Recv ZSGSRD 29588
17-03-18 02:54:44.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.914 -07 000000461 INF: FPGA: Recv ZSGSRD 29589
17-03-18 02:54:44.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.924 -07 000000444 INF: FPGA: Recv ZSGSRD 29593
17-03-18 02:54:44.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.934 -07 000000629 INF: FPGA: Recv ZSGSRD 29596
17-03-18 02:54:44.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.944 -07 000000430 INF: FPGA: Recv ZSGSRD 29593
17-03-18 02:54:44.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.954 -07 000000590 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:54:44.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:44.964 -07 000000462 INF: FPGA: Recv ZSGSRD 29591
17-03-18 02:54:44.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:44.974 -07 000000455 INF: FPGA: Recv ZPIEZORD 25063
17-03-18 02:54:44.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:44.984 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.9 V.
17-03-18 02:54:44.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29594 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29594 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29588 (-129.6 uncal um), Max = 29602 (-129.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:54:44.984 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29594, posNoise = 8, negNoise = 6
17-03-18 02:54:44.984 -07 000000610 INF: Z Motor: After move to -0.130428, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:44.984 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:54:44.984 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:44.984 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:44.984 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:44.984 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:44.984 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:44.984 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:44.984 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:44.984 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:44.984 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:44.984 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:44.984 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:44.984 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:44.994 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:54:44.994 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:44.994 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:44.994 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:45.004 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:54:45.004 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:54:45.004 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:54:45.004 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:54:45.004 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28669 150\n [Camera]
17-03-18 02:54:45.204 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:45.604 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:45.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:45.604 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:45.614 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:45.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:45.614 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:45.614 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:45.614 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:54:45.624 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:45.624 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:54:45.804 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28669 784
17-03-18 02:54:45.954 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:45.984 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:54:45.984 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:54:45.994 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:45.994 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:54:45.994 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:54:45.994 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:45.994 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:45.994 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:54:45.994 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:46.004 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:54:46.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:46.144 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:46.144 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:46.144 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:46.144 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:54:46.144 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:46.144 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:46.144 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:46.154 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:46.154 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 02:54:46.334 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:54:46.334 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:46.334 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28669 150' command took 2 ms to send, 1314 ms to get response, and 1325 ms overall
17-03-18 02:54:46.334 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:54:46.334 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130441486134409. ------
17-03-18 02:54:46.334 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:46.334 -07 000000461 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13730 mm
17-03-18 02:54:46.334 -07 000000461 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:46.344 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:54:46.344 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29992, sync = True, waitForSettling = False)
17-03-18 02:54:46.344 -07 000000618 INF: Z Motor: Moving to -0.137295 mm, started at -0.130441 mm, distance = -6.85 um
17-03-18 02:54:46.344 -07 000000512 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:54:46.344 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:46.344 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 6 ms to get response, and 7 ms overall
17-03-18 02:54:46.344 -07 000000618 INF: FPGA: Xmit ZDACW 29992\n [Z Motor]
17-03-18 02:54:46.344 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:54:46.354 -07 000000618 INF: FPGA: 'ZDACW 29992' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:46.354 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:46.354 -07 000000590 INF: FPGA: Recv ZDACR 29992
17-03-18 02:54:46.364 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:46.364 -07 000000618 INF: Z Motor: MoveAbsStepped took 14 ms (did NOT wait for settling yet))
17-03-18 02:54:46.364 -07 000000430 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:54:46.374 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:46.374 -07 000000467 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:54:46.384 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-18 02:54:46.384 -07 000000512 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:46.384 -07 000000512 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:46.384 -07 000000512 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:54:46.384 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:46.524 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:54:46.524 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:54:46.524 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:46.524 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:46.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:46.524 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:54:46.524 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:54:46.524 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:46.524 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:46.524 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:54:46.534 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:46.534 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:54:46.564 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:54:46.564 -07 000000430 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 215 ms overall
17-03-18 02:54:46.754 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-18 02:54:46.754 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 02:54:46.804 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:46.804 -07 000000430 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:54:46.814 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:54:46.814 -07 000000512 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:46.814 -07 000000512 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 02:54:46.814 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-18 02:54:47.764 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:47.764 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:54:47.774 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:47.774 -07 000000512 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:47.794 -07 000000512 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:47.794 -07 000000512 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:47.794 -07 000000512 INF: Y Motor: Moved to 67.3721 after 1453 ms (table move)
17-03-18 02:54:47.804 -07 000000461 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137295 mm (DAC = 29992)
17-03-18 02:54:47.804 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.804 -07 000000591 INF: FPGA: Recv ZSGSRD 30657
17-03-18 02:54:47.814 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:47.814 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.814 -07 000000444 INF: FPGA: Recv ZSGSRD 30662
17-03-18 02:54:47.824 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:47.824 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.824 -07 000000455 INF: FPGA: Recv ZSGSRD 30667
17-03-18 02:54:47.834 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:47.834 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.834 -07 000000424 INF: FPGA: Recv ZSGSRD 30666
17-03-18 02:54:47.844 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:47.844 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.844 -07 000000626 INF: FPGA: Recv ZSGSRD 30667
17-03-18 02:54:47.854 -07 000000461 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:47.854 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.854 -07 000000430 INF: FPGA: Recv ZSGSRD 30654
17-03-18 02:54:47.864 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:47.864 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.864 -07 000000579 INF: FPGA: Recv ZSGSRD 30661
17-03-18 02:54:47.874 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:47.884 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.884 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.009895,
17-03-18 02:54:47.884 -07 000000462 INF: FPGA: Recv ZSGSRD 30664
17-03-18 02:54:47.894 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:54:47.914 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.914 -07 000000444 INF: FPGA: Recv ZSGSRD 30664
17-03-18 02:54:47.924 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:54:47.924 -07 000000461 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:47.924 -07 000000561 INF: FPGA: Recv ZSGSRD 30662
17-03-18 02:54:47.934 -07 000000461 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:47.954 -07 000000461 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:47.954 -07 000000579 INF: FPGA: Recv ZPIEZORD 26478
17-03-18 02:54:47.964 -07 000000461 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:54:47.964 -07 000000461 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.2 V.
17-03-18 02:54:47.964 -07 000000461 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30662 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30663 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30654 (-136.5 uncal um), Max = 30667 (-136.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:54:47.964 -07 000000461 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30662, posNoise = 5, negNoise = 8
17-03-18 02:54:47.964 -07 000000461 INF: Z Motor: After move to -0.137295, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:47.964 -07 000000461 INF: Z Motor: Settle wait time = 1456 ms, measure time = 158 ms (allowed 150 ms), total time = 1614 ms
17-03-18 02:54:47.964 -07 000000461 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-18 02:54:47.964 -07 000000461 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 02:54:47.964 -07 000000461 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:47.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:47.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:47.964 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:47.964 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:47.964 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:54:47.964 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:47.964 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:54:47.964 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:54:47.974 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:47.974 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:54:47.984 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:54:47.984 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:54:47.984 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:54:48.034 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:54:48.324 -07 000000461 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:54:48.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:54:48.334 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:54:48.334 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-18 02:54:48.364 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:54:48.364 -07 000000606 INF: FPGA: Recv CAMSNAP
17-03-18 02:54:48.374 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall
17-03-18 02:54:48.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:54:48.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:48.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:54:48.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:54:48.474 -07 000000590 INF: Autofocus start
17-03-18 02:54:48.474 -07 000000590 INF: MeasureProfile start
17-03-18 02:54:48.474 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:54:48.474 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:54:48.484 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:48.484 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:54:48.484 -07 000000590 INF: MeasureProfile done
17-03-18 02:54:48.484 -07 000000590 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:54:48.484 -07 000000590 INF: Autofocus finished
17-03-18 02:54:48.684 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:54:48.684 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:54:48.684 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137302544701809. ----------
17-03-18 02:54:48.684 -07 000000610 INF: Cycle	105	Tile	10	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:48.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28517, sync = True, waitForSettling = True)
17-03-18 02:54:48.694 -07 000000610 INF: Z Motor: Moving to -0.130542 mm, started at -0.137303 mm, distance = 6.76 um
17-03-18 02:54:48.694 -07 000000610 INF: FPGA: Xmit ZDACW 28517\n [Z Motor]
17-03-18 02:54:48.694 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:54:48.704 -07 000000610 INF: FPGA: 'ZDACW 28517' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:48.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:48.704 -07 000000606 INF: FPGA: Recv ZDACR 28517
17-03-18 02:54:48.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:48.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.864 -07 000000626 INF: FPGA: Recv ZSGSRD 29610
17-03-18 02:54:48.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:48.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.874 -07 000000444 INF: FPGA: Recv ZSGSRD 29614
17-03-18 02:54:48.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.884 -07 000000502 INF: FPGA: Recv ZSGSRD 29617
17-03-18 02:54:48.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.894 -07 000000461 INF: FPGA: Recv ZSGSRD 29604
17-03-18 02:54:48.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.904 -07 000000455 INF: FPGA: Recv ZSGSRD 29623
17-03-18 02:54:48.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.914 -07 000000461 INF: FPGA: Recv ZSGSRD 29608
17-03-18 02:54:48.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.924 -07 000000455 INF: FPGA: Recv ZSGSRD 29611
17-03-18 02:54:48.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.934 -07 000000502 INF: FPGA: Recv ZSGSRD 29617
17-03-18 02:54:48.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.944 -07 000000512 INF: FPGA: Recv ZSGSRD 29613
17-03-18 02:54:48.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:48.954 -07 000000626 INF: FPGA: Recv ZSGSRD 29616
17-03-18 02:54:48.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:48.964 -07 000000430 INF: FPGA: Recv ZPIEZORD 25094
17-03-18 02:54:48.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:48.974 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.9 V.
17-03-18 02:54:48.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29613 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29614 (-129.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29604 (-129.7 uncal um), Max = 29623 (-129.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:54:48.974 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29613, posNoise = 10, negNoise = 9
17-03-18 02:54:48.974 -07 000000610 INF: Z Motor: After move to -0.130542, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:48.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:54:48.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:48.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:48.974 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:48.974 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:48.974 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:48.974 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:48.974 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:48.974 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:48.974 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:54:48.974 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:48.974 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:48.974 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:48.984 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:48.984 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:48.984 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:48.984 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:48.994 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:54:48.994 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:54:48.994 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:54:48.994 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:54:48.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28693 150\n [Camera]
17-03-18 02:54:49.194 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:49.594 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:49.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:49.594 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:49.594 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:49.594 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:54:49.594 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:49.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:49.594 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:49.594 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:49.594 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1112907760, 0x0, 418435064) start.
17-03-18 02:54:49.784 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28693 784
17-03-18 02:54:49.934 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:49.974 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:54:49.974 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:54:49.974 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:49.974 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1112907760, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:54:49.974 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:54:49.974 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:49.974 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:49.974 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:54:49.974 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:49.984 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:54:50.124 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:50.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:50.134 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:50.134 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:50.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:50.134 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:50.144 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:50.144 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:54:50.144 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:50.144 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:54:50.324 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 02:54:50.324 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:50.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28693 150' command took 2 ms to send, 1324 ms to get response, and 1329 ms overall
17-03-18 02:54:50.324 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130821
17-03-18 02:54:50.324 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13082 mm
17-03-18 02:54:50.324 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:50.324 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:54:50.324 -07 000000590 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:54:50.324 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 28578, sync = True, waitForSettling = False)
17-03-18 02:54:50.324 -07 000000461 INF: Z Motor: Moving to -0.130822 mm, started at -0.130564 mm, distance = -0.26 um
17-03-18 02:54:50.324 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:50.334 -07 000000461 INF: FPGA: Xmit ZDACW 28578\n [Z Motor]
17-03-18 02:54:50.334 -07 000000502 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:54:50.334 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:54:50.334 -07 000000590 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:50.334 -07 000000590 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:50.334 -07 000000590 INF: Y Motor: Moving 1345 steps-22
17-03-18 02:54:50.334 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:54:50.344 -07 000000461 INF: FPGA: 'ZDACW 28578' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:50.344 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:50.354 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:50.354 -07 000000502 INF: FPGA: Recv ZDACR 28578
17-03-18 02:54:50.364 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:54:50.364 -07 000000461 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 02:54:50.524 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:54:50.524 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:54:50.524 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:54:50.524 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:50.524 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:54:50.524 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:50.534 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:50.534 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:54:50.534 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:50.534 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:54:50.714 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:54:50.714 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-18 02:54:50.774 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:50.774 -07 000000591 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:54:50.784 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:50.784 -07 000000590 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:50.784 -07 000000590 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:54:50.784 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.841 mm, average velocity = 2.183 mm/sec
17-03-18 02:54:51.524 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:51.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:51.734 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:51.734 -07 000000444 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:54:51.744 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.744 -07 000000590 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:51.764 -07 000000590 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:51.764 -07 000000590 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:51.764 -07 000000590 INF: Y Motor: Moved to 68.2051 after 1438 ms (table move)
17-03-18 02:54:51.774 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130822 mm (DAC = 28578)
17-03-18 02:54:51.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.774 -07 000000424 INF: FPGA: Recv ZSGSRD 29656
17-03-18 02:54:51.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.784 -07 000000461 INF: FPGA: Recv ZSGSRD 29659
17-03-18 02:54:51.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.794 -07 000000501 INF: FPGA: Recv ZSGSRD 29653
17-03-18 02:54:51.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.804 -07 000000430 INF: FPGA: Recv ZSGSRD 29650
17-03-18 02:54:51.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.814 -07 000000467 INF: FPGA: Recv ZSGSRD 29650
17-03-18 02:54:51.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.824 -07 000000618 INF: FPGA: Recv ZSGSRD 29647
17-03-18 02:54:51.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.834 -07 000000512 INF: FPGA: Recv ZSGSRD 29656
17-03-18 02:54:51.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.844 -07 000000561 INF: FPGA: Recv ZSGSRD 29659
17-03-18 02:54:51.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.854 -07 000000430 INF: FPGA: Recv ZSGSRD 29660
17-03-18 02:54:51.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:51.864 -07 000000467 INF: FPGA: Recv ZSGSRD 29664
17-03-18 02:54:51.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:51.874 -07 000000591 INF: FPGA: Recv ZPIEZORD 25173
17-03-18 02:54:51.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.884 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.8 V.
17-03-18 02:54:51.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29655 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29656 (-130.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29647 (-130.0 uncal um), Max = 29664 (-130.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:54:51.884 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29655, posNoise = 9, negNoise = 8
17-03-18 02:54:51.884 -07 000000610 INF: Z Motor: After move to -0.130822, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:51.884 -07 000000610 INF: Z Motor: Settle wait time = 1440 ms, measure time = 111 ms (allowed 150 ms), total time = 1551 ms
17-03-18 02:54:51.884 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:51.924 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-18 02:54:51.924 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:51.924 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.130833363075056. ----------
17-03-18 02:54:51.924 -07 000000610 INF: Cycle	105	Tile	11	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:51.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28401, sync = True, waitForSettling = True)
17-03-18 02:54:51.924 -07 000000610 INF: Z Motor: Moving to -0.130011 mm, started at -0.130833 mm, distance = 0.82 um
17-03-18 02:54:51.924 -07 000000610 INF: FPGA: Xmit ZDACW 28401\n [Z Motor]
17-03-18 02:54:51.924 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:54:51.934 -07 000000610 INF: FPGA: 'ZDACW 28401' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:54:51.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:51.934 -07 000000629 INF: FPGA: Recv ZDACR 28401
17-03-18 02:54:51.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:51.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:52.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.094 -07 000000455 INF: FPGA: Recv ZSGSRD 29527
17-03-18 02:54:52.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:52.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.104 -07 000000590 INF: FPGA: Recv ZSGSRD 29534
17-03-18 02:54:52.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.114 -07 000000430 INF: FPGA: Recv ZSGSRD 29529
17-03-18 02:54:52.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.124 -07 000000626 INF: FPGA: Recv ZSGSRD 29525
17-03-18 02:54:52.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.134 -07 000000618 INF: FPGA: Recv ZSGSRD 29527
17-03-18 02:54:52.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.144 -07 000000444 INF: FPGA: Recv ZSGSRD 29522
17-03-18 02:54:52.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.154 -07 000000502 INF: FPGA: Recv ZSGSRD 29530
17-03-18 02:54:52.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.164 -07 000000561 INF: FPGA: Recv ZSGSRD 29525
17-03-18 02:54:52.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.174 -07 000000444 INF: FPGA: Recv ZSGSRD 29532
17-03-18 02:54:52.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:52.184 -07 000000467 INF: FPGA: Recv ZSGSRD 29531
17-03-18 02:54:52.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:52.194 -07 000000606 INF: FPGA: Recv ZPIEZORD 25054
17-03-18 02:54:52.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:52.204 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.8 V.
17-03-18 02:54:52.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29528 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29528 (-129.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29522 (-129.2 uncal um), Max = 29534 (-129.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:54:52.204 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29528, posNoise = 6, negNoise = 6
17-03-18 02:54:52.204 -07 000000610 INF: Z Motor: After move to -0.130011, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:52.204 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:54:52.204 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:52.204 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:52.204 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:52.204 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:52.204 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:52.204 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:52.204 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:52.204 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:52.204 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:52.204 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:52.204 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:52.204 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:52.214 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:52.214 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:52.214 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:52.214 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:52.214 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:54:52.214 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:54:52.224 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:54:52.224 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:54:52.224 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28578 150\n [Camera]
17-03-18 02:54:52.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:54:52.824 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 02:54:52.824 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 02:54:52.824 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:52.834 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 02:54:52.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 02:54:52.834 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:52.834 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:52.834 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 02:54:52.834 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:52.834 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:54:53.014 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28578 784
17-03-18 02:54:53.164 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:53.214 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:54:53.214 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:54:53.214 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:53.214 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:54:53.214 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:54:53.214 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:54:53.214 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:54:53.214 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:53.224 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:53.224 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:54:53.274 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.999021,
17-03-18 02:54:53.354 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:53.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:53.354 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:53.464 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:53.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:53.474 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:53.474 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:53.474 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:54:53.474 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:53.474 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:54:53.554 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:54:53.554 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:53.554 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28578 150' command took 2 ms to send, 1321 ms to get response, and 1327 ms overall
17-03-18 02:54:53.554 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130731
17-03-18 02:54:53.554 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13073 mm
17-03-18 02:54:53.554 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:53.554 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:54:53.554 -07 000000512 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 02:54:53.554 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:53.554 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 28558, sync = True, waitForSettling = False)
17-03-18 02:54:53.554 -07 000000462 INF: Z Motor: Moving to -0.130730 mm, started at -0.130017 mm, distance = -0.71 um
17-03-18 02:54:53.554 -07 000000502 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:54:53.564 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:54:53.564 -07 000000512 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:53.564 -07 000000512 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:53.564 -07 000000512 INF: Y Motor: Moving 1340 steps-15
17-03-18 02:54:53.564 -07 000000462 INF: FPGA: Xmit ZDACW 28558\n [Z Motor]
17-03-18 02:54:53.564 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:54:53.574 -07 000000462 INF: FPGA: 'ZDACW 28558' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:54:53.574 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:53.574 -07 000000430 INF: FPGA: Recv ZDACR 28558
17-03-18 02:54:53.584 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:53.584 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:53.584 -07 000000462 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 02:54:53.864 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:54:53.864 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:54:53.864 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:53.864 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:54:53.874 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:54:53.874 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:53.874 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:53.874 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-18 02:54:53.874 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:53.884 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:54:53.954 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:54:53.954 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:54:54.004 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:54.004 -07 000000591 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:54:54.014 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:54:54.014 -07 000000512 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:54.014 -07 000000512 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:54:54.014 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-18 02:54:54.964 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:54.964 -07 000000461 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:54:54.974 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:54.974 -07 000000512 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:54.994 -07 000000512 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:54.994 -07 000000512 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:54.994 -07 000000512 INF: Y Motor: Moved to 69.0273 after 1442 ms (table move)
17-03-18 02:54:55.004 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130730 mm (DAC = 28558)
17-03-18 02:54:55.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.004 -07 000000455 INF: FPGA: Recv ZSGSRD 29642
17-03-18 02:54:55.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.014 -07 000000576 INF: FPGA: Recv ZSGSRD 29638
17-03-18 02:54:55.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.024 -07 000000501 INF: FPGA: Recv ZSGSRD 29641
17-03-18 02:54:55.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.034 -07 000000618 INF: FPGA: Recv ZSGSRD 29647
17-03-18 02:54:55.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.044 -07 000000430 INF: FPGA: Recv ZSGSRD 29638
17-03-18 02:54:55.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.054 -07 000000590 INF: FPGA: Recv ZSGSRD 29639
17-03-18 02:54:55.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.064 -07 000000455 INF: FPGA: Recv ZSGSRD 29638
17-03-18 02:54:55.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.074 -07 000000606 INF: FPGA: Recv ZSGSRD 29644
17-03-18 02:54:55.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.084 -07 000000461 INF: FPGA: Recv ZSGSRD 29642
17-03-18 02:54:55.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.094 -07 000000444 INF: FPGA: Recv ZSGSRD 29640
17-03-18 02:54:55.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.104 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:55.104 -07 000000590 INF: FPGA: Recv ZPIEZORD 25169
17-03-18 02:54:55.114 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.114 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.8 V.
17-03-18 02:54:55.114 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29641 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29640 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29638 (-129.9 uncal um), Max = 29647 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:54:55.114 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29641, posNoise = 6, negNoise = 3
17-03-18 02:54:55.114 -07 000000610 INF: Z Motor: After move to -0.130730, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:55.114 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 111 ms (allowed 150 ms), total time = 1554 ms
17-03-18 02:54:55.114 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:55.154 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 02:54:55.154 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:55.154 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.130743424105072. ----------
17-03-18 02:54:55.154 -07 000000610 INF: Cycle	105	Tile	12	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:55.154 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28381, sync = True, waitForSettling = True)
17-03-18 02:54:55.154 -07 000000610 INF: Z Motor: Moving to -0.129920 mm, started at -0.130743 mm, distance = 0.82 um
17-03-18 02:54:55.154 -07 000000610 INF: FPGA: Xmit ZDACW 28381\n [Z Motor]
17-03-18 02:54:55.154 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:54:55.164 -07 000000610 INF: FPGA: 'ZDACW 28381' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:54:55.164 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:55.164 -07 000000626 INF: FPGA: Recv ZDACR 28381
17-03-18 02:54:55.174 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.174 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:55.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.324 -07 000000591 INF: FPGA: Recv ZSGSRD 29520
17-03-18 02:54:55.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:54:55.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.334 -07 000000629 INF: FPGA: Recv ZSGSRD 29518
17-03-18 02:54:55.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.344 -07 000000618 INF: FPGA: Recv ZSGSRD 29511
17-03-18 02:54:55.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.354 -07 000000444 INF: FPGA: Recv ZSGSRD 29517
17-03-18 02:54:55.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.364 -07 000000501 INF: FPGA: Recv ZSGSRD 29512
17-03-18 02:54:55.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.374 -07 000000430 INF: FPGA: Recv ZSGSRD 29512
17-03-18 02:54:55.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.384 -07 000000576 INF: FPGA: Recv ZSGSRD 29516
17-03-18 02:54:55.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.394 -07 000000461 INF: FPGA: Recv ZSGSRD 29508
17-03-18 02:54:55.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.404 -07 000000462 INF: FPGA: Recv ZSGSRD 29518
17-03-18 02:54:55.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:54:55.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:55.414 -07 000000576 INF: FPGA: Recv ZSGSRD 29513
17-03-18 02:54:55.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.424 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:55.424 -07 000000590 INF: FPGA: Recv ZPIEZORD 25003
17-03-18 02:54:55.434 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:55.434 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.9 V.
17-03-18 02:54:55.434 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29514 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29514 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29508 (-129.1 uncal um), Max = 29520 (-129.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:54:55.434 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29514, posNoise = 6, negNoise = 6
17-03-18 02:54:55.434 -07 000000610 INF: Z Motor: After move to -0.129920, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:55.434 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:54:55.434 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:55.434 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:55.434 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:55.434 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:55.434 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:55.434 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:55.434 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:55.434 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:55.434 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:55.434 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:55.434 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:55.434 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:55.444 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:54:55.444 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:55.444 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:55.444 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:55.454 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:54:55.454 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:54:55.454 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:54:55.454 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:54:55.464 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28558 150\n [Camera]
17-03-18 02:54:55.654 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:56.054 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:56.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:56.054 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:56.064 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:56.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:56.064 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:56.064 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:56.064 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-18 02:54:56.064 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:56.064 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:54:56.254 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28558 785
17-03-18 02:54:56.404 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:56.434 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:54:56.434 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:54:56.444 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:56.444 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:54:56.444 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:54:56.444 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:56.444 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:54:56.444 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:54:56.444 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:54:56.454 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:54:56.524 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:54:56.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:54:56.594 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:56.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:56.594 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:56.594 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:56.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:56.594 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:56.594 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:56.594 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:54:56.604 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:56.604 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:54:56.784 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:54:56.784 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:54:56.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28558 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-18 02:54:56.784 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130315
17-03-18 02:54:56.784 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13031 mm
17-03-18 02:54:56.794 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:54:56.794 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:54:56.794 -07 000000461 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 02:54:56.794 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:56.794 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 28467, sync = True, waitForSettling = False)
17-03-18 02:54:56.794 -07 000000561 INF: Z Motor: Moving to -0.130314 mm, started at -0.129928 mm, distance = -0.39 um
17-03-18 02:54:56.794 -07 000000579 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:54:56.804 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:56.804 -07 000000461 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:56.804 -07 000000561 INF: FPGA: Xmit ZDACW 28467\n [Z Motor]
17-03-18 02:54:56.804 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:54:56.804 -07 000000461 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:54:56.804 -07 000000461 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:54:56.814 -07 000000561 INF: FPGA: 'ZDACW 28467' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:54:56.814 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:54:56.824 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:56.824 -07 000000606 INF: FPGA: Recv ZDACR 28467
17-03-18 02:54:56.834 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:54:56.834 -07 000000561 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:54:56.974 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:54:56.974 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:54:56.974 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:56.974 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:54:56.974 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:54:56.974 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:56.984 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:56.984 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:54:56.984 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:56.984 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:54:57.184 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:54:57.184 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:54:57.234 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:57.234 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:54:57.244 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:54:57.244 -07 000000461 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:57.244 -07 000000461 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:54:57.244 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 02:54:58.194 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:54:58.194 -07 000000579 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:54:58.204 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.204 -07 000000461 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:54:58.224 -07 000000461 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:54:58.224 -07 000000461 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:54:58.234 -07 000000461 INF: Y Motor: Moved to 69.8633 after 1437 ms (table move)
17-03-18 02:54:58.234 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130314 mm (DAC = 28467)
17-03-18 02:54:58.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.234 -07 000000590 INF: FPGA: Recv ZSGSRD 29572
17-03-18 02:54:58.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:54:58.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.244 -07 000000579 INF: FPGA: Recv ZSGSRD 29577
17-03-18 02:54:58.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.254 -07 000000591 INF: FPGA: Recv ZSGSRD 29576
17-03-18 02:54:58.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.264 -07 000000512 INF: FPGA: Recv ZSGSRD 29574
17-03-18 02:54:58.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.274 -07 000000502 INF: FPGA: Recv ZSGSRD 29575
17-03-18 02:54:58.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.284 -07 000000467 INF: FPGA: Recv ZSGSRD 29572
17-03-18 02:54:58.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.294 -07 000000462 INF: FPGA: Recv ZSGSRD 29572
17-03-18 02:54:58.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.304 -07 000000502 INF: FPGA: Recv ZSGSRD 29575
17-03-18 02:54:58.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.324 -07 000000591 INF: FPGA: Recv ZSGSRD 29563
17-03-18 02:54:58.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:54:58.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.334 -07 000000626 INF: FPGA: Recv ZSGSRD 29577
17-03-18 02:54:58.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:58.344 -07 000000461 INF: FPGA: Recv ZPIEZORD 25109
17-03-18 02:54:58.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.354 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.344 V. Piezo Error = -9.8 V.
17-03-18 02:54:58.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29573 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29574 (-129.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29563 (-129.5 uncal um), Max = 29577 (-129.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:54:58.354 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29573, posNoise = 4, negNoise = 10
17-03-18 02:54:58.354 -07 000000610 INF: Z Motor: After move to -0.130314, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:58.354 -07 000000610 INF: Z Motor: Settle wait time = 1439 ms, measure time = 118 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:54:58.354 -07 000000610 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 02:54:58.394 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 02:54:58.394 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:54:58.394 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.130306577679432. ----------
17-03-18 02:54:58.394 -07 000000610 INF: Cycle	105	Tile	13	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:54:58.394 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28290, sync = True, waitForSettling = True)
17-03-18 02:54:58.394 -07 000000610 INF: Z Motor: Moving to -0.129503 mm, started at -0.130307 mm, distance = 0.80 um
17-03-18 02:54:58.394 -07 000000610 INF: FPGA: Xmit ZDACW 28290\n [Z Motor]
17-03-18 02:54:58.394 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:54:58.404 -07 000000610 INF: FPGA: 'ZDACW 28290' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:54:58.404 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:54:58.404 -07 000000502 INF: FPGA: Recv ZDACR 28290
17-03-18 02:54:58.414 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.414 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:54:58.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.564 -07 000000467 INF: FPGA: Recv ZSGSRD 29450
17-03-18 02:54:58.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.574 -07 000000512 INF: FPGA: Recv ZSGSRD 29450
17-03-18 02:54:58.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.584 -07 000000629 INF: FPGA: Recv ZSGSRD 29449
17-03-18 02:54:58.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.594 -07 000000444 INF: FPGA: Recv ZSGSRD 29445
17-03-18 02:54:58.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.604 -07 000000561 INF: FPGA: Recv ZSGSRD 29447
17-03-18 02:54:58.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.614 -07 000000626 INF: FPGA: Recv ZSGSRD 29447
17-03-18 02:54:58.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.634 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.999021,
17-03-18 02:54:58.634 -07 000000461 INF: FPGA: Recv ZSGSRD 29455
17-03-18 02:54:58.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:54:58.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.664 -07 000000502 INF: FPGA: Recv ZSGSRD 29447
17-03-18 02:54:58.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:54:58.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.694 -07 000000629 INF: FPGA: Recv ZSGSRD 29446
17-03-18 02:54:58.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:54:58.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:54:58.704 -07 000000467 INF: FPGA: Recv ZSGSRD 29446
17-03-18 02:54:58.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:54:58.714 -07 000000502 INF: FPGA: Recv ZPIEZORD 24943
17-03-18 02:54:58.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:54:58.724 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.9 V.
17-03-18 02:54:58.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29448 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29447 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29445 (-128.7 uncal um), Max = 29455 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:54:58.724 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29448, posNoise = 7, negNoise = 3
17-03-18 02:54:58.724 -07 000000610 INF: Z Motor: After move to -0.129503, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:54:58.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-18 02:54:58.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:54:58.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:54:58.724 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:54:58.724 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:54:58.724 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:54:58.724 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:54:58.724 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:54:58.724 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:54:58.724 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:54:58.724 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:54:58.724 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:54:58.724 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:54:58.724 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:54:58.724 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:54:58.724 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:54:58.724 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:54:58.744 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:54:58.744 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:54:58.744 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:54:58.744 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:54:58.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28467 150\n [Camera]
17-03-18 02:54:58.954 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:54:59.354 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:54:59.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:54:59.354 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:59.354 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:54:59.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:54:59.354 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:59.464 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:59.464 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 02:54:59.464 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:59.464 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:54:59.544 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28467 784
17-03-18 02:54:59.694 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:54:59.844 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:54:59.844 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:54:59.844 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:59.844 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:54:59.844 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:54:59.844 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:54:59.844 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:59.844 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:54:59.844 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-18 02:54:59.854 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-18 02:54:59.884 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:54:59.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:54:59.884 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:54:59.884 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:54:59.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:54:59.884 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:54:59.884 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:54:59.884 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:54:59.894 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:54:59.894 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-18 02:55:00.074 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:55:00.074 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:55:00.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28467 150' command took 2 ms to send, 1315 ms to get response, and 1325 ms overall
17-03-18 02:55:00.074 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:55:00.074 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129503551161712. ------
17-03-18 02:55:00.084 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:55:00.084 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13552 mm
17-03-18 02:55:00.084 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:55:00.084 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:55:00.084 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:55:00.084 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29605, sync = True, waitForSettling = False)
17-03-18 02:55:00.084 -07 000000561 INF: Z Motor: Moving to -0.135523 mm, started at -0.129504 mm, distance = -6.02 um
17-03-18 02:55:00.084 -07 000000512 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 02:55:00.094 -07 000000561 INF: FPGA: Xmit ZDACW 29605\n [Z Motor]
17-03-18 02:55:00.094 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:00.094 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:55:00.104 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:00.104 -07 000000561 INF: FPGA: 'ZDACW 29605' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:55:00.104 -07 000000606 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:55:00.114 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:55:00.114 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:55:00.114 -07 000000512 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:00.114 -07 000000512 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:55:00.114 -07 000000512 INF: Y Motor: Moving 1343 steps-19
17-03-18 02:55:00.124 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:00.124 -07 000000590 INF: FPGA: Recv ZDACR 29605
17-03-18 02:55:00.134 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:55:00.134 -07 000000561 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:55:00.134 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:55:00.264 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:55:00.264 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:55:00.264 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:00.264 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:55:00.264 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:55:00.264 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:00.274 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:00.274 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:00.274 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:55:00.274 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:55:00.314 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:55:00.314 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:55:00.504 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:55:00.504 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:55:00.554 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:00.554 -07 000000455 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:55:00.564 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:00.564 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:00.564 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:55:00.564 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 02:55:01.514 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:01.514 -07 000000467 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:55:01.524 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:01.524 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:01.524 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:55:01.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:55:01.554 -07 000000512 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:55:01.554 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:55:01.554 -07 000000512 INF: Y Motor: Moved to 70.6885 after 1465 ms (table move)
17-03-18 02:55:01.554 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135523 mm (DAC = 29605)
17-03-18 02:55:01.554 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.554 -07 000000579 INF: FPGA: Recv ZSGSRD 30389
17-03-18 02:55:01.564 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:01.564 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.564 -07 000000501 INF: FPGA: Recv ZSGSRD 30388
17-03-18 02:55:01.574 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.574 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.574 -07 000000424 INF: FPGA: Recv ZSGSRD 30392
17-03-18 02:55:01.584 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.584 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.584 -07 000000579 INF: FPGA: Recv ZSGSRD 30388
17-03-18 02:55:01.594 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.594 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.594 -07 000000618 INF: FPGA: Recv ZSGSRD 30383
17-03-18 02:55:01.604 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.604 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.604 -07 000000590 INF: FPGA: Recv ZSGSRD 30379
17-03-18 02:55:01.614 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.614 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.614 -07 000000629 INF: FPGA: Recv ZSGSRD 30387
17-03-18 02:55:01.624 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.624 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.624 -07 000000430 INF: FPGA: Recv ZSGSRD 30386
17-03-18 02:55:01.634 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.634 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.634 -07 000000579 INF: FPGA: Recv ZSGSRD 30385
17-03-18 02:55:01.644 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.644 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:01.644 -07 000000591 INF: FPGA: Recv ZSGSRD 30393
17-03-18 02:55:01.654 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.654 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:01.654 -07 000000590 INF: FPGA: Recv ZPIEZORD 26204
17-03-18 02:55:01.664 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:01.664 -07 000000502 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -9.2 V.
17-03-18 02:55:01.664 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30387 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30388 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30379 (-134.7 uncal um), Max = 30393 (-134.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:55:01.664 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30387, posNoise = 6, negNoise = 8
17-03-18 02:55:01.664 -07 000000502 INF: Z Motor: After move to -0.135523, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:01.664 -07 000000502 INF: Z Motor: Settle wait time = 1469 ms, measure time = 105 ms (allowed 150 ms), total time = 1574 ms
17-03-18 02:55:01.664 -07 000000502 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:55:01.714 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-18 02:55:01.714 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:55:01.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:55:01.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:55:01.714 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:55:01.714 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:55:01.714 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:55:01.714 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:55:01.724 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:55:01.724 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:55:01.724 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:55:01.724 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:55:01.734 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 02:55:01.734 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-18 02:55:01.734 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:55:01.774 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:55:02.074 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:55:02.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:55:02.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:55:02.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-18 02:55:02.114 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:55:02.114 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:55:02.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 02:55:02.214 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 128 ms.
17-03-18 02:55:02.214 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:02.214 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:55:02.214 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-18 02:55:02.314 -07 000000590 INF: Autofocus start
17-03-18 02:55:02.314 -07 000000590 INF: MeasureProfile start
17-03-18 02:55:02.314 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:55:02.314 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:55:02.324 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:02.324 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:55:02.324 -07 000000590 INF: MeasureProfile done
17-03-18 02:55:02.324 -07 000000590 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:55:02.324 -07 000000590 INF: Autofocus finished
17-03-18 02:55:02.524 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:55:02.524 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-18 02:55:02.534 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135535886362825. ----------
17-03-18 02:55:02.534 -07 000000610 INF: Cycle	105	Tile	14	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:55:02.534 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28100, sync = True, waitForSettling = True)
17-03-18 02:55:02.534 -07 000000610 INF: Z Motor: Moving to -0.128634 mm, started at -0.135536 mm, distance = 6.90 um
17-03-18 02:55:02.534 -07 000000610 INF: FPGA: Xmit ZDACW 28100\n [Z Motor]
17-03-18 02:55:02.534 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:55:02.544 -07 000000610 INF: FPGA: 'ZDACW 28100' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:02.544 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:02.544 -07 000000501 INF: FPGA: Recv ZDACR 28100
17-03-18 02:55:02.554 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.554 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:55:02.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.704 -07 000000467 INF: FPGA: Recv ZSGSRD 29320
17-03-18 02:55:02.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:02.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.714 -07 000000444 INF: FPGA: Recv ZSGSRD 29312
17-03-18 02:55:02.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.724 -07 000000579 INF: FPGA: Recv ZSGSRD 29310
17-03-18 02:55:02.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.734 -07 000000424 INF: FPGA: Recv ZSGSRD 29307
17-03-18 02:55:02.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.744 -07 000000569 INF: FPGA: Recv ZSGSRD 29309
17-03-18 02:55:02.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.754 -07 000000606 INF: FPGA: Recv ZSGSRD 29320
17-03-18 02:55:02.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.764 -07 000000502 INF: FPGA: Recv ZSGSRD 29312
17-03-18 02:55:02.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.774 -07 000000579 INF: FPGA: Recv ZSGSRD 29314
17-03-18 02:55:02.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.784 -07 000000618 INF: FPGA: Recv ZSGSRD 29316
17-03-18 02:55:02.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:02.794 -07 000000501 INF: FPGA: Recv ZSGSRD 29312
17-03-18 02:55:02.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.804 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:02.804 -07 000000606 INF: FPGA: Recv ZPIEZORD 24779
17-03-18 02:55:02.814 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:02.814 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.9 V.
17-03-18 02:55:02.814 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29313 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29312 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29307 (-127.8 uncal um), Max = 29320 (-127.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:55:02.814 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29313, posNoise = 7, negNoise = 6
17-03-18 02:55:02.814 -07 000000610 INF: Z Motor: After move to -0.128634, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:02.814 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:55:02.814 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:55:02.814 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:55:02.814 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:55:02.814 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:55:02.814 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:55:02.814 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:55:02.814 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:55:02.814 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:55:02.814 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:55:02.814 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:55:02.814 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:55:02.814 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:55:02.824 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:55:02.824 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:55:02.824 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:55:02.824 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:55:02.834 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:55:02.834 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:55:02.834 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:55:02.834 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:55:02.834 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28276 150\n [Camera]
17-03-18 02:55:03.034 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:55:03.434 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:55:03.434 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:55:03.434 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:03.434 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:55:03.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:55:03.434 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:03.434 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:03.434 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:55:03.444 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:03.444 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:55:03.624 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28276 787
17-03-18 02:55:03.774 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:55:03.814 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:55:03.814 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:55:03.814 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:03.814 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:55:03.814 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:55:03.814 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:03.814 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:55:03.814 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:55:03.824 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:55:03.824 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:55:03.964 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:55:03.964 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:55:03.964 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:03.974 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:55:03.974 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:55:03.974 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:04.084 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:04.084 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:55:04.094 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:04.094 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:55:04.094 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.990831,
17-03-18 02:55:04.154 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:55:04.154 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:55:04.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28276 150' command took 2 ms to send, 1319 ms to get response, and 1325 ms overall
17-03-18 02:55:04.164 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129289
17-03-18 02:55:04.164 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12929 mm
17-03-18 02:55:04.164 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:55:04.164 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:55:04.164 -07 000000502 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:55:04.164 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 28243, sync = True, waitForSettling = False)
17-03-18 02:55:04.164 -07 000000561 INF: Z Motor: Moving to -0.129288 mm, started at -0.128636 mm, distance = -0.65 um
17-03-18 02:55:04.164 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:04.164 -07 000000461 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:55:04.174 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:55:04.174 -07 000000502 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:04.174 -07 000000502 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:55:04.174 -07 000000502 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:55:04.174 -07 000000561 INF: FPGA: Xmit ZDACW 28243\n [Z Motor]
17-03-18 02:55:04.174 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:55:04.184 -07 000000561 INF: FPGA: 'ZDACW 28243' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:55:04.184 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:04.184 -07 000000626 INF: FPGA: Recv ZDACR 28243
17-03-18 02:55:04.194 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:55:04.194 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:04.194 -07 000000561 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 02:55:04.484 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 392 ms.
17-03-18 02:55:04.484 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:55:04.484 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:04.484 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:55:04.484 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:55:04.484 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:04.484 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:04.484 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:04.484 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-18 02:55:04.494 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-18 02:55:04.564 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:55:04.564 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:55:04.614 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:04.614 -07 000000430 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:55:04.624 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:55:04.624 -07 000000502 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:04.624 -07 000000502 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:55:04.624 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-18 02:55:05.574 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:05.574 -07 000000467 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:55:05.584 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.584 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:05.604 -07 000000502 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:55:05.604 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:55:05.604 -07 000000502 INF: Y Motor: Moved to 71.5190 after 1444 ms (table move)
17-03-18 02:55:05.614 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129288 mm (DAC = 28243)
17-03-18 02:55:05.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.614 -07 000000430 INF: FPGA: Recv ZSGSRD 29413
17-03-18 02:55:05.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.624 -07 000000444 INF: FPGA: Recv ZSGSRD 29411
17-03-18 02:55:05.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.634 -07 000000424 INF: FPGA: Recv ZSGSRD 29416
17-03-18 02:55:05.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.644 -07 000000430 INF: FPGA: Recv ZSGSRD 29415
17-03-18 02:55:05.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.654 -07 000000467 INF: FPGA: Recv ZSGSRD 29427
17-03-18 02:55:05.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.664 -07 000000502 INF: FPGA: Recv ZSGSRD 29418
17-03-18 02:55:05.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.674 -07 000000512 INF: FPGA: Recv ZSGSRD 29417
17-03-18 02:55:05.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.684 -07 000000579 INF: FPGA: Recv ZSGSRD 29411
17-03-18 02:55:05.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.694 -07 000000430 INF: FPGA: Recv ZSGSRD 29408
17-03-18 02:55:05.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.704 -07 000000444 INF: FPGA: Recv ZSGSRD 29416
17-03-18 02:55:05.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:05.714 -07 000000424 INF: FPGA: Recv ZPIEZORD 24952
17-03-18 02:55:05.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.724 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.8 V.
17-03-18 02:55:05.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29415 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29416 (-128.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29408 (-128.5 uncal um), Max = 29427 (-128.6 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:55:05.724 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29415, posNoise = 12, negNoise = 7
17-03-18 02:55:05.724 -07 000000610 INF: Z Motor: After move to -0.129288, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:05.724 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 110 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:55:05.724 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:55:05.764 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-18 02:55:05.764 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:55:05.764 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.129291552161034. ----------
17-03-18 02:55:05.764 -07 000000610 INF: Cycle	105	Tile	15	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:55:05.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28066, sync = True, waitForSettling = True)
17-03-18 02:55:05.764 -07 000000610 INF: Z Motor: Moving to -0.128478 mm, started at -0.129292 mm, distance = 0.81 um
17-03-18 02:55:05.764 -07 000000610 INF: FPGA: Xmit ZDACW 28066\n [Z Motor]
17-03-18 02:55:05.764 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:55:05.774 -07 000000610 INF: FPGA: 'ZDACW 28066' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:05.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:05.774 -07 000000626 INF: FPGA: Recv ZDACR 28066
17-03-18 02:55:05.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:55:05.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.934 -07 000000462 INF: FPGA: Recv ZSGSRD 29288
17-03-18 02:55:05.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:05.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.944 -07 000000618 INF: FPGA: Recv ZSGSRD 29291
17-03-18 02:55:05.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.954 -07 000000629 INF: FPGA: Recv ZSGSRD 29287
17-03-18 02:55:05.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.964 -07 000000590 INF: FPGA: Recv ZSGSRD 29292
17-03-18 02:55:05.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.974 -07 000000502 INF: FPGA: Recv ZSGSRD 29292
17-03-18 02:55:05.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.984 -07 000000501 INF: FPGA: Recv ZSGSRD 29295
17-03-18 02:55:05.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:05.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:05.994 -07 000000467 INF: FPGA: Recv ZSGSRD 29291
17-03-18 02:55:06.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:06.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:06.004 -07 000000576 INF: FPGA: Recv ZSGSRD 29287
17-03-18 02:55:06.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:06.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:06.014 -07 000000569 INF: FPGA: Recv ZSGSRD 29288
17-03-18 02:55:06.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:06.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:06.024 -07 000000618 INF: FPGA: Recv ZSGSRD 29291
17-03-18 02:55:06.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:06.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:06.034 -07 000000579 INF: FPGA: Recv ZPIEZORD 24790
17-03-18 02:55:06.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:06.044 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.283 V. Piezo Error = -9.9 V.
17-03-18 02:55:06.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29290 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29291 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29287 (-127.7 uncal um), Max = 29295 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:55:06.044 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29290, posNoise = 5, negNoise = 3
17-03-18 02:55:06.044 -07 000000610 INF: Z Motor: After move to -0.128478, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:06.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:55:06.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:55:06.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:55:06.044 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:55:06.044 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:55:06.044 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:55:06.044 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:55:06.044 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:55:06.044 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:55:06.044 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:55:06.044 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:55:06.044 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:55:06.044 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:55:06.054 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:55:06.054 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:55:06.054 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:55:06.054 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:55:06.054 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:55:06.054 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:55:06.064 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:55:06.064 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:55:06.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28243 150\n [Camera]
17-03-18 02:55:06.264 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:55:06.524 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:55:06.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:55:06.664 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:55:06.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:55:06.664 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:06.664 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:55:06.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:55:06.664 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:06.674 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:06.674 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:55:06.674 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:06.674 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:55:06.854 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28243 784
17-03-18 02:55:07.004 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:55:07.044 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:55:07.044 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:55:07.044 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:07.044 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:55:07.044 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:55:07.044 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:07.044 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:07.044 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:55:07.054 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:55:07.054 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:55:07.194 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:55:07.194 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:55:07.194 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:07.204 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:55:07.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:55:07.204 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:07.204 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:55:07.204 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:07.214 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:07.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:55:07.384 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:55:07.394 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:55:07.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28243 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-18 02:55:07.394 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.128821
17-03-18 02:55:07.394 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12882 mm
17-03-18 02:55:07.394 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:55:07.394 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:55:07.394 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:55:07.394 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:07.394 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 28141, sync = True, waitForSettling = False)
17-03-18 02:55:07.394 -07 000000569 INF: Z Motor: Moving to -0.128821 mm, started at -0.128489 mm, distance = -0.33 um
17-03-18 02:55:07.394 -07 000000455 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:55:07.404 -07 000000569 INF: FPGA: Xmit ZDACW 28141\n [Z Motor]
17-03-18 02:55:07.404 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:07.404 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:07.404 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:55:07.404 -07 000000462 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:55:07.404 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:55:07.414 -07 000000569 INF: FPGA: 'ZDACW 28141' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:55:07.414 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:07.414 -07 000000606 INF: FPGA: Recv ZDACR 28141
17-03-18 02:55:07.424 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:07.424 -07 000000569 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 02:55:07.424 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:55:07.584 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:55:07.584 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:55:07.584 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:07.584 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:55:07.584 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:55:07.584 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:07.594 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:07.594 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:55:07.594 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:07.604 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:55:07.804 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:55:07.804 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-18 02:55:07.844 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:07.854 -07 000000502 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:55:07.864 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:07.864 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:07.864 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:55:07.864 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.844 mm, average velocity = 2.104 mm/sec
17-03-18 02:55:08.814 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:08.814 -07 000000461 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:55:08.824 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:08.824 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:08.844 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:55:08.844 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:55:08.844 -07 000000462 INF: Y Motor: Moved to 72.3496 after 1453 ms (table move)
17-03-18 02:55:08.854 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128821 mm (DAC = 28141)
17-03-18 02:55:08.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.854 -07 000000512 INF: FPGA: Recv ZSGSRD 29346
17-03-18 02:55:08.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:55:08.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.864 -07 000000618 INF: FPGA: Recv ZSGSRD 29340
17-03-18 02:55:08.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:08.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.874 -07 000000424 INF: FPGA: Recv ZSGSRD 29343
17-03-18 02:55:08.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:08.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.884 -07 000000576 INF: FPGA: Recv ZSGSRD 29350
17-03-18 02:55:08.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:08.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.904 -07 000000461 INF: FPGA: Recv ZSGSRD 29345
17-03-18 02:55:08.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:55:08.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.934 -07 000000462 INF: FPGA: Recv ZSGSRD 29342
17-03-18 02:55:08.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:55:08.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.944 -07 000000591 INF: FPGA: Recv ZSGSRD 29345
17-03-18 02:55:08.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:08.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.974 -07 000000501 INF: FPGA: Recv ZSGSRD 29341
17-03-18 02:55:08.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:55:08.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.984 -07 000000629 INF: FPGA: Recv ZSGSRD 29336
17-03-18 02:55:08.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:08.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:08.994 -07 000000561 INF: FPGA: Recv ZSGSRD 29347
17-03-18 02:55:09.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:09.004 -07 000000626 INF: FPGA: Recv ZPIEZORD 24868
17-03-18 02:55:09.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.014 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.8 V.
17-03-18 02:55:09.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29344 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29344 (-128.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29336 (-128.0 uncal um), Max = 29350 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:55:09.014 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29344, posNoise = 6, negNoise = 8
17-03-18 02:55:09.014 -07 000000610 INF: Z Motor: After move to -0.128821, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:09.014 -07 000000610 INF: Z Motor: Settle wait time = 1454 ms, measure time = 160 ms (allowed 150 ms), total time = 1614 ms
17-03-18 02:55:09.014 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 160 ms, longer than max expected time of 150 ms
17-03-18 02:55:09.014 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:55:09.014 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:55:09.014 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.128835433098969. ----------
17-03-18 02:55:09.014 -07 000000610 INF: Cycle	105	Tile	16	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:55:09.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27964, sync = True, waitForSettling = True)
17-03-18 02:55:09.014 -07 000000610 INF: Z Motor: Moving to -0.128011 mm, started at -0.128835 mm, distance = 0.82 um
17-03-18 02:55:09.014 -07 000000610 INF: FPGA: Xmit ZDACW 27964\n [Z Motor]
17-03-18 02:55:09.014 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:55:09.024 -07 000000610 INF: FPGA: 'ZDACW 27964' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:09.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:09.024 -07 000000576 INF: FPGA: Recv ZDACR 27964
17-03-18 02:55:09.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:55:09.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.184 -07 000000629 INF: FPGA: Recv ZSGSRD 29221
17-03-18 02:55:09.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:09.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.194 -07 000000561 INF: FPGA: Recv ZSGSRD 29217
17-03-18 02:55:09.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.204 -07 000000430 INF: FPGA: Recv ZSGSRD 29211
17-03-18 02:55:09.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.214 -07 000000618 INF: FPGA: Recv ZSGSRD 29220
17-03-18 02:55:09.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.224 -07 000000606 INF: FPGA: Recv ZSGSRD 29215
17-03-18 02:55:09.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.234 -07 000000629 INF: FPGA: Recv ZSGSRD 29215
17-03-18 02:55:09.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.244 -07 000000569 INF: FPGA: Recv ZSGSRD 29220
17-03-18 02:55:09.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.254 -07 000000444 INF: FPGA: Recv ZSGSRD 29220
17-03-18 02:55:09.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.264 -07 000000618 INF: FPGA: Recv ZSGSRD 29220
17-03-18 02:55:09.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:09.274 -07 000000455 INF: FPGA: Recv ZSGSRD 29213
17-03-18 02:55:09.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:09.284 -07 000000626 INF: FPGA: Recv ZPIEZORD 24690
17-03-18 02:55:09.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:09.294 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.9 V.
17-03-18 02:55:09.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29217 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29218 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29211 (-127.2 uncal um), Max = 29221 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:55:09.294 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29217, posNoise = 4, negNoise = 6
17-03-18 02:55:09.294 -07 000000610 INF: Z Motor: After move to -0.128011, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:09.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:55:09.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:55:09.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:55:09.294 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:55:09.294 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:55:09.294 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:55:09.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:55:09.294 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:55:09.294 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:55:09.294 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:55:09.294 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:55:09.294 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:55:09.294 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:55:09.294 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:55:09.304 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:55:09.304 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:55:09.304 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:55:09.314 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:55:09.314 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:55:09.314 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:55:09.314 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:55:09.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28141 150\n [Camera]
17-03-18 02:55:09.454 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.986717,
17-03-18 02:55:09.524 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:55:09.924 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:55:09.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:55:09.924 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:09.924 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:09.924 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:55:09.924 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:55:09.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:55:09.924 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:09.934 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:09.934 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:55:10.114 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28141 784
17-03-18 02:55:10.264 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:55:10.324 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:55:10.324 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:55:10.324 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:10.324 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:55:10.324 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:55:10.324 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-18 02:55:10.324 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:55:10.324 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:10.334 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:55:10.334 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 02:55:10.454 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:55:10.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:55:10.454 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:10.454 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:55:10.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:55:10.464 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:10.464 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:10.464 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:55:10.464 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:10.464 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:55:10.644 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:55:10.644 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:55:10.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28141 150' command took 2 ms to send, 1318 ms to get response, and 1327 ms overall
17-03-18 02:55:10.654 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128577
17-03-18 02:55:10.654 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12858 mm
17-03-18 02:55:10.654 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:55:10.654 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:55:10.654 -07 000000629 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 02:55:10.654 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:10.654 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28088, sync = True, waitForSettling = False)
17-03-18 02:55:10.654 -07 000000424 INF: Z Motor: Moving to -0.128579 mm, started at -0.128020 mm, distance = -0.56 um
17-03-18 02:55:10.654 -07 000000430 INF: FPGA: Recv YRDPOS 148173
17-03-18 02:55:10.664 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:55:10.664 -07 000000629 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:10.664 -07 000000424 INF: FPGA: Xmit ZDACW 28088\n [Z Motor]
17-03-18 02:55:10.664 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:55:10.664 -07 000000629 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:55:10.664 -07 000000629 INF: Y Motor: Moving 1348 steps-27
17-03-18 02:55:10.674 -07 000000424 INF: FPGA: 'ZDACW 28088' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:55:10.674 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:55:10.684 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:10.684 -07 000000501 INF: FPGA: Recv ZDACR 28088
17-03-18 02:55:10.694 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:55:10.694 -07 000000424 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 02:55:10.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:55:10.834 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:55:10.834 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:10.844 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:55:10.844 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:55:10.844 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:10.844 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:10.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:55:10.844 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:10.854 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:55:11.044 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:55:11.044 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 02:55:11.094 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:11.094 -07 000000444 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:55:11.104 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:11.104 -07 000000629 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:11.104 -07 000000629 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:55:11.104 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.213 mm/sec
17-03-18 02:55:11.524 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:55:11.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:55:12.054 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:12.054 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:55:12.064 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:12.064 -07 000000629 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:12.084 -07 000000629 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:55:12.084 -07 000000629 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:55:12.084 -07 000000629 INF: Y Motor: Moved to 73.1763 after 1435 ms (table move)
17-03-18 02:55:12.094 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128579 mm (DAC = 28088)
17-03-18 02:55:12.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.094 -07 000000430 INF: FPGA: Recv ZSGSRD 29308
17-03-18 02:55:12.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:55:12.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.104 -07 000000626 INF: FPGA: Recv ZSGSRD 29309
17-03-18 02:55:12.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.114 -07 000000444 INF: FPGA: Recv ZSGSRD 29304
17-03-18 02:55:12.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.124 -07 000000501 INF: FPGA: Recv ZSGSRD 29309
17-03-18 02:55:12.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.134 -07 000000590 INF: FPGA: Recv ZSGSRD 29314
17-03-18 02:55:12.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.144 -07 000000561 INF: FPGA: Recv ZSGSRD 29301
17-03-18 02:55:12.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.154 -07 000000629 INF: FPGA: Recv ZSGSRD 29305
17-03-18 02:55:12.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.164 -07 000000430 INF: FPGA: Recv ZSGSRD 29304
17-03-18 02:55:12.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.174 -07 000000502 INF: FPGA: Recv ZSGSRD 29299
17-03-18 02:55:12.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.184 -07 000000462 INF: FPGA: Recv ZSGSRD 29302
17-03-18 02:55:12.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:12.194 -07 000000455 INF: FPGA: Recv ZPIEZORD 24871
17-03-18 02:55:12.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.204 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -9.7 V.
17-03-18 02:55:12.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29306 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29304 (-127.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29299 (-127.8 uncal um), Max = 29314 (-127.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:55:12.204 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29306, posNoise = 8, negNoise = 7
17-03-18 02:55:12.204 -07 000000610 INF: Z Motor: After move to -0.128579, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:12.204 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 109 ms (allowed 150 ms), total time = 1545 ms
17-03-18 02:55:12.204 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:55:12.254 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 02:55:12.254 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:55:12.254 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.128591313037582. ----------
17-03-18 02:55:12.254 -07 000000610 INF: Cycle	105	Tile	17	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:55:12.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27911, sync = True, waitForSettling = True)
17-03-18 02:55:12.254 -07 000000610 INF: Z Motor: Moving to -0.127768 mm, started at -0.128591 mm, distance = 0.82 um
17-03-18 02:55:12.254 -07 000000610 INF: FPGA: Xmit ZDACW 27911\n [Z Motor]
17-03-18 02:55:12.254 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:55:12.264 -07 000000610 INF: FPGA: 'ZDACW 27911' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:55:12.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:12.264 -07 000000618 INF: FPGA: Recv ZDACR 27911
17-03-18 02:55:12.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:55:12.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.424 -07 000000579 INF: FPGA: Recv ZSGSRD 29173
17-03-18 02:55:12.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.434 -07 000000430 INF: FPGA: Recv ZSGSRD 29182
17-03-18 02:55:12.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29180
17-03-18 02:55:12.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.454 -07 000000590 INF: FPGA: Recv ZSGSRD 29181
17-03-18 02:55:12.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.464 -07 000000618 INF: FPGA: Recv ZSGSRD 29181
17-03-18 02:55:12.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.474 -07 000000501 INF: FPGA: Recv ZSGSRD 29177
17-03-18 02:55:12.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.484 -07 000000626 INF: FPGA: Recv ZSGSRD 29179
17-03-18 02:55:12.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.494 -07 000000591 INF: FPGA: Recv ZSGSRD 29179
17-03-18 02:55:12.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.504 -07 000000576 INF: FPGA: Recv ZSGSRD 29177
17-03-18 02:55:12.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:12.514 -07 000000461 INF: FPGA: Recv ZSGSRD 29179
17-03-18 02:55:12.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:12.524 -07 000000501 INF: FPGA: Recv ZPIEZORD 24681
17-03-18 02:55:12.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:12.534 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.259 V. Piezo Error = -9.9 V.
17-03-18 02:55:12.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29179 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29179 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29173 (-127.0 uncal um), Max = 29182 (-127.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:55:12.534 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29179, posNoise = 3, negNoise = 6
17-03-18 02:55:12.534 -07 000000610 INF: Z Motor: After move to -0.127768, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:12.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:55:12.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:55:12.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:55:12.534 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:55:12.534 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:55:12.534 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:55:12.534 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:55:12.534 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:55:12.534 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:55:12.534 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:55:12.534 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:55:12.534 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:55:12.534 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:55:12.544 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:55:12.544 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:55:12.544 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:55:12.544 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:55:12.554 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:55:12.554 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:55:12.554 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:55:12.554 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:55:12.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 28088 150\n [Camera]
17-03-18 02:55:12.764 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:55:13.154 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:55:13.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:55:13.164 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:13.164 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:55:13.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:55:13.164 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:13.274 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:13.274 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:55:13.274 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:13.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-18 02:55:13.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28088 784
17-03-18 02:55:13.504 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:55:13.644 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:55:13.644 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:55:13.644 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:13.644 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:55:13.644 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:55:13.644 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:13.654 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:13.654 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 490 ms.
17-03-18 02:55:13.654 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:13.654 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 494 ms.
17-03-18 02:55:13.694 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:55:13.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:55:13.694 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:13.694 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:55:13.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:55:13.694 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:13.694 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:13.694 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:55:13.704 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:13.704 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-18 02:55:13.884 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1318
17-03-18 02:55:13.884 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:55:13.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 28088 150' command took 2 ms to send, 1316 ms to get response, and 1325 ms overall
17-03-18 02:55:13.884 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:55:13.884 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.127775438095578. ------
17-03-18 02:55:13.894 -07 000000461 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:55:13.894 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13407 mm
17-03-18 02:55:13.894 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:55:13.894 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:55:13.894 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:55:13.894 -07 000000424 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:55:13.894 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 29287, sync = True, waitForSettling = False)
17-03-18 02:55:13.894 -07 000000629 INF: Z Motor: Moving to -0.134067 mm, started at -0.127775 mm, distance = -6.29 um
17-03-18 02:55:13.904 -07 000000461 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:55:13.904 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:13.904 -07 000000591 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:55:13.914 -07 000000629 INF: FPGA: Xmit ZDACW 29287\n [Z Motor]
17-03-18 02:55:13.914 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:55:13.914 -07 000000424 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:13.914 -07 000000424 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:55:13.914 -07 000000424 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:55:13.914 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:55:13.924 -07 000000461 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:55:13.924 -07 000000629 INF: FPGA: 'ZDACW 29287' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:55:13.934 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:55:13.944 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:13.944 -07 000000462 INF: FPGA: Recv ZDACR 29287
17-03-18 02:55:13.954 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:55:13.954 -07 000000629 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-18 02:55:14.074 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:55:14.074 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:55:14.074 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:14.074 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:55:14.074 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:55:14.074 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:14.074 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:55:14.074 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:55:14.084 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:55:14.084 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:55:14.124 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:55:14.124 -07 000000461 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:55:14.304 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 02:55:14.304 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:55:14.344 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:14.354 -07 000000444 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:55:14.354 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:55:14.354 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:14.354 -07 000000424 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:55:14.354 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-18 02:55:14.814 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 3.99219,
17-03-18 02:55:15.304 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:15.304 -07 000000579 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:55:15.314 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:15.314 -07 000000424 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:15.334 -07 000000424 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:55:15.334 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:55:15.334 -07 000000424 INF: Y Motor: Moved to 74.0083 after 1434 ms (table move)
17-03-18 02:55:15.334 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134067 mm (DAC = 29287)
17-03-18 02:55:15.334 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.334 -07 000000579 INF: FPGA: Recv ZSGSRD 30156
17-03-18 02:55:15.344 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:15.344 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.344 -07 000000576 INF: FPGA: Recv ZSGSRD 30157
17-03-18 02:55:15.354 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.354 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.354 -07 000000591 INF: FPGA: Recv ZSGSRD 30158
17-03-18 02:55:15.364 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.364 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.364 -07 000000424 INF: FPGA: Recv ZSGSRD 30163
17-03-18 02:55:15.374 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.374 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.374 -07 000000590 INF: FPGA: Recv ZSGSRD 30163
17-03-18 02:55:15.384 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.384 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.384 -07 000000462 INF: FPGA: Recv ZSGSRD 30158
17-03-18 02:55:15.394 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.394 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.394 -07 000000461 INF: FPGA: Recv ZSGSRD 30166
17-03-18 02:55:15.404 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.404 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.404 -07 000000430 INF: FPGA: Recv ZSGSRD 30158
17-03-18 02:55:15.414 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.414 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.414 -07 000000502 INF: FPGA: Recv ZSGSRD 30154
17-03-18 02:55:15.424 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.424 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:15.424 -07 000000455 INF: FPGA: Recv ZSGSRD 30156
17-03-18 02:55:15.434 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.434 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:15.434 -07 000000579 INF: FPGA: Recv ZPIEZORD 25970
17-03-18 02:55:15.444 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:15.444 -07 000000501 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.469 V. Piezo Error = -9.2 V.
17-03-18 02:55:15.444 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30159 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30158 (-133.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30154 (-133.3 uncal um), Max = 30166 (-133.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:55:15.444 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30159, posNoise = 7, negNoise = 5
17-03-18 02:55:15.444 -07 000000501 INF: Z Motor: After move to -0.134067, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:15.444 -07 000000501 INF: Z Motor: Settle wait time = 1437 ms, measure time = 106 ms (allowed 150 ms), total time = 1543 ms
17-03-18 02:55:15.444 -07 000000501 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:55:15.494 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 02:55:15.494 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:55:15.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:55:15.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:55:15.494 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:55:15.494 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:55:15.494 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:55:15.494 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:55:15.494 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:55:15.494 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:55:15.504 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:55:15.504 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:55:15.514 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:55:15.514 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:55:15.514 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:55:15.554 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:55:15.854 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:55:15.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:55:15.864 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:55:15.864 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-18 02:55:15.894 -07 000000606 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:55:15.894 -07 000000591 INF: FPGA: Recv CAMSNAP
17-03-18 02:55:15.894 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 385 ms overall
17-03-18 02:55:15.984 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:55:15.984 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:15.984 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:55:15.984 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:55:16.094 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:55:16.094 -07 000000444 INF: Autofocus start
17-03-18 02:55:16.094 -07 000000444 INF: MeasureProfile start
17-03-18 02:55:16.094 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:55:16.104 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:55:16.104 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:55:16.104 -07 000000444 INF: MeasureProfile done
17-03-18 02:55:16.104 -07 000000444 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:55:16.104 -07 000000444 INF: Autofocus finished
17-03-18 02:55:16.304 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:55:16.304 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:55:16.304 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134071165994504. ----------
17-03-18 02:55:16.304 -07 000000610 INF: Cycle	105	Tile	18	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:55:16.314 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27812, sync = True, waitForSettling = True)
17-03-18 02:55:16.314 -07 000000610 INF: Z Motor: Moving to -0.127315 mm, started at -0.134071 mm, distance = 6.76 um
17-03-18 02:55:16.314 -07 000000610 INF: FPGA: Xmit ZDACW 27812\n [Z Motor]
17-03-18 02:55:16.314 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:55:16.324 -07 000000610 INF: FPGA: 'ZDACW 27812' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:55:16.324 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:16.324 -07 000000591 INF: FPGA: Recv ZDACR 27812
17-03-18 02:55:16.334 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.334 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:55:16.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.484 -07 000000512 INF: FPGA: Recv ZSGSRD 29113
17-03-18 02:55:16.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:16.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.494 -07 000000424 INF: FPGA: Recv ZSGSRD 29111
17-03-18 02:55:16.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.504 -07 000000626 INF: FPGA: Recv ZSGSRD 29110
17-03-18 02:55:16.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29107
17-03-18 02:55:16.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.524 -07 000000629 INF: FPGA: Recv ZSGSRD 29100
17-03-18 02:55:16.524 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:55:16.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 104. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:55:16.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.534 -07 000000590 INF: FPGA: Recv ZSGSRD 29108
17-03-18 02:55:16.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.544 -07 000000502 INF: FPGA: Recv ZSGSRD 29104
17-03-18 02:55:16.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.554 -07 000000501 INF: FPGA: Recv ZSGSRD 29113
17-03-18 02:55:16.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.564 -07 000000424 INF: FPGA: Recv ZSGSRD 29109
17-03-18 02:55:16.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:16.574 -07 000000462 INF: FPGA: Recv ZSGSRD 29106
17-03-18 02:55:16.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.584 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:16.584 -07 000000467 INF: FPGA: Recv ZPIEZORD 24587
17-03-18 02:55:16.594 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:16.594 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.9 V.
17-03-18 02:55:16.594 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29108 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29108 (-126.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29100 (-126.5 uncal um), Max = 29113 (-126.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:55:16.594 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29108, posNoise = 5, negNoise = 8
17-03-18 02:55:16.594 -07 000000610 INF: Z Motor: After move to -0.127315, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:16.594 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:55:16.594 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:55:16.594 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:55:16.594 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:55:16.594 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:55:16.594 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:55:16.594 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:55:16.594 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:55:16.594 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:55:16.594 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:55:16.594 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:55:16.594 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:55:16.594 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:55:16.604 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:55:16.604 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:55:16.604 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:55:16.604 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:55:16.614 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:55:16.614 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:55:16.614 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:55:16.614 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:55:16.614 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 27988 150\n [Camera]
17-03-18 02:55:16.814 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:55:17.214 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 591
17-03-18 02:55:17.214 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 591
17-03-18 02:55:17.214 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:17.214 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 591
17-03-18 02:55:17.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 591
17-03-18 02:55:17.214 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:17.214 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:17.214 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 02:55:17.224 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:17.224 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 02:55:17.404 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27988 784
17-03-18 02:55:17.554 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-18 02:55:17.594 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:55:17.594 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:55:17.594 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:55:17.594 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:17.594 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:55:17.594 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:17.594 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:17.604 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:17.604 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:55:17.604 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:55:17.744 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:55:17.744 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:55:17.744 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:17.754 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:55:17.754 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:55:17.754 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:17.754 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:17.754 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:55:17.754 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:17.754 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 02:55:17.934 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:55:17.944 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:55:17.944 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 27988 150' command took 2 ms to send, 1320 ms to get response, and 1325 ms overall
17-03-18 02:55:17.944 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127320
17-03-18 02:55:17.944 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12732 mm
17-03-18 02:55:17.944 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:55:17.944 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:55:17.944 -07 000000579 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:55:17.944 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 27813, sync = True, waitForSettling = False)
17-03-18 02:55:17.944 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:17.944 -07 000000467 INF: FPGA: Recv YRDPOS 151570
17-03-18 02:55:17.954 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:55:17.954 -07 000000579 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:17.954 -07 000000579 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:55:17.954 -07 000000579 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:55:17.954 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:55:18.134 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:55:18.134 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:55:18.134 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:18.134 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:55:18.134 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:55:18.134 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:18.144 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:55:18.144 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:55:18.144 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:55:18.144 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:55:18.334 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:55:18.374 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 410 ms to get response, and 413 ms overall
17-03-18 02:55:18.404 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:18.404 -07 000000626 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:55:18.414 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:18.414 -07 000000579 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:18.414 -07 000000579 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:55:18.414 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 414 ms, distance = 0.844 mm, average velocity = 2.039 mm/sec
17-03-18 02:55:19.364 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:19.364 -07 000000502 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:55:19.374 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:19.374 -07 000000579 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:19.384 -07 000000579 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:55:19.384 -07 000000579 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:55:19.384 -07 000000579 INF: Y Motor: Moved to 74.8320 after 1444 ms (table move)
17-03-18 02:55:19.394 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127320 mm (DAC = 27813)
17-03-18 02:55:19.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.394 -07 000000467 INF: FPGA: Recv ZSGSRD 29230
17-03-18 02:55:19.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:55:19.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.404 -07 000000512 INF: FPGA: Recv ZSGSRD 29235
17-03-18 02:55:19.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.414 -07 000000501 INF: FPGA: Recv ZSGSRD 29232
17-03-18 02:55:19.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.424 -07 000000502 INF: FPGA: Recv ZSGSRD 29228
17-03-18 02:55:19.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.434 -07 000000626 INF: FPGA: Recv ZSGSRD 29229
17-03-18 02:55:19.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.444 -07 000000444 INF: FPGA: Recv ZSGSRD 29239
17-03-18 02:55:19.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.454 -07 000000461 INF: FPGA: Recv ZSGSRD 29230
17-03-18 02:55:19.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.464 -07 000000501 INF: FPGA: Recv ZSGSRD 29232
17-03-18 02:55:19.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.474 -07 000000502 INF: FPGA: Recv ZSGSRD 29242
17-03-18 02:55:19.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.484 -07 000000579 INF: FPGA: Recv ZSGSRD 29232
17-03-18 02:55:19.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:19.494 -07 000000467 INF: FPGA: Recv ZPIEZORD 24751
17-03-18 02:55:19.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.504 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.244 V. Piezo Error = -9.6 V.
17-03-18 02:55:19.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29233 (-127.3 uncal um), Error = 0.0 uncal um, Median = 29232 (-127.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29228 (-127.3 uncal um), Max = 29242 (-127.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:55:19.504 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29233, posNoise = 9, negNoise = 5
17-03-18 02:55:19.504 -07 000000610 INF: Z Motor: After move to -0.127320, error = -0.000803, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:19.504 -07 000000610 INF: Z Motor: Settle wait time = 3081 ms, measure time = 107 ms (allowed 150 ms), total time = 3188 ms
17-03-18 02:55:19.504 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:55:19.554 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:55:19.554 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:55:19.554 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.128122345551233. ----------
17-03-18 02:55:19.554 -07 000000610 INF: Cycle	105	Tile	19	Exposure Settings		A	399	G	192	T	192	C	399
17-03-18 02:55:19.554 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27636, sync = True, waitForSettling = True)
17-03-18 02:55:19.554 -07 000000610 INF: Z Motor: Moving to -0.126509 mm, started at -0.128122 mm, distance = 1.61 um
17-03-18 02:55:19.554 -07 000000610 INF: FPGA: Xmit ZDACW 27636\n [Z Motor]
17-03-18 02:55:19.554 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:55:19.564 -07 000000610 INF: FPGA: 'ZDACW 27636' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:55:19.564 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:55:19.564 -07 000000501 INF: FPGA: Recv ZDACR 27636
17-03-18 02:55:19.574 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.574 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:55:19.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.724 -07 000000590 INF: FPGA: Recv ZSGSRD 28987
17-03-18 02:55:19.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:19.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.734 -07 000000626 INF: FPGA: Recv ZSGSRD 28980
17-03-18 02:55:19.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.744 -07 000000501 INF: FPGA: Recv ZSGSRD 28977
17-03-18 02:55:19.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.754 -07 000000618 INF: FPGA: Recv ZSGSRD 28982
17-03-18 02:55:19.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.764 -07 000000591 INF: FPGA: Recv ZSGSRD 28989
17-03-18 02:55:19.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.774 -07 000000590 INF: FPGA: Recv ZSGSRD 28985
17-03-18 02:55:19.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.784 -07 000000424 INF: FPGA: Recv ZSGSRD 28979
17-03-18 02:55:19.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.794 -07 000000629 INF: FPGA: Recv ZSGSRD 28991
17-03-18 02:55:19.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.804 -07 000000461 INF: FPGA: Recv ZSGSRD 28987
17-03-18 02:55:19.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:55:19.814 -07 000000501 INF: FPGA: Recv ZSGSRD 28979
17-03-18 02:55:19.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.824 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:55:19.824 -07 000000467 INF: FPGA: Recv ZPIEZORD 24428
17-03-18 02:55:19.834 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:19.834 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.217 V. Piezo Error = -10.0 V.
17-03-18 02:55:19.834 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28984 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28984 (-125.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 28977 (-125.7 uncal um), Max = 28991 (-125.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:55:19.834 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28984, posNoise = 7, negNoise = 7
17-03-18 02:55:19.834 -07 000000610 INF: Z Motor: After move to -0.126509, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:55:19.834 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:55:19.834 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:55:19.834 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:55:19.834 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:55:19.834 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:55:19.834 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:55:19.834 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:55:19.834 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:55:19.834 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:55:19.834 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:55:19.834 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:55:19.834 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 02:55:19.834 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:55:19.844 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:55:19.844 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:55:19.844 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:55:19.844 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:55:19.854 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:55:19.854 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:55:19.854 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:55:19.854 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:55:19.864 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 399 399 192 192 27813 150\n [Camera]
17-03-18 02:55:20.064 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:55:20.174 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.012614,
17-03-18 02:55:20.464 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-18 02:55:20.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-18 02:55:20.464 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:20.464 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:20.464 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1112907760, 0x0, 391868352) start.
17-03-18 02:55:20.464 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-18 02:55:20.464 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-18 02:55:20.464 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:20.464 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:20.464 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1148330024, 0x0, 418435064) start.
17-03-18 02:55:20.654 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27813 784
17-03-18 02:55:20.804 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 934
17-03-18 02:55:20.834 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1112907760, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:55:20.844 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:55:20.844 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:20.844 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1148330024, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:55:20.844 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:55:20.844 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:20.844 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:20.844 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:55:20.844 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:55:20.854 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:55:20.994 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1126
17-03-18 02:55:20.994 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1126
17-03-18 02:55:20.994 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:55:20.994 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1126
17-03-18 02:55:20.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1126
17-03-18 02:55:20.994 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:55:20.994 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:55:20.994 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-18 02:55:21.004 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:55:21.004 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:55:21.184 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:55:21.184 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:55:21.184 -07 000000610 INF: FPGA: 'CAMDBLSNAP 399 399 192 192 27813 150' command took 2 ms to send, 1315 ms to get response, and 1332 ms overall
17-03-18 02:55:21.384 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:55:21.384 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:55:21.384 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:21.384 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:55:21.384 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:55:21.384 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:55:21.384 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:55:21.384 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:55:21.384 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:55:21.384 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:55:21.394 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 02:55:21.434 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:55:21.434 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:55:21.474 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 02:55:21.484 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 02:55:21.484 -07 000000610 INF: Imaging Cycle 105: ScanTilesCommand Cycle 105 time end. Duration was 141467 ms.
17-03-18 02:55:21.484 -07 000000610 INF: =================== Cycle #105 ===================
17-03-18 02:55:21.484 -07 000000610 INF: ===================  ===================
17-03-18 02:55:21.484 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:55:21.494 -07 000000606 INF: FPGA: Recv EXLED1ADCR 24
17-03-18 02:55:21.494 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 02:55:21.494 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-18 02:55:21.494 -07 000000501 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 105, FrontChillerTemperature: 4.012614, FrontChillerHeatSinkTemperature: 0.504039, AmbientTemperature: 18.69611, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.57927, GreenLEDSensorTemperature: 25.67163, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-18 02:55:21.524 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:55:21.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:55:21.574 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.