17-03-18 02:55:21.624 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:55:21.634 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 02:55:21.634 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 02:55:21.634 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:21.634 -07 000000501 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:55:21.644 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:55:21.644 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:21.644 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 02:55:21.644 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 02:55:21.644 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 02:55:21.764 -07 000000512 INF: FPGA: Recv YMVTO 154378 878
17-03-18 02:55:21.764 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 119 ms overall
17-03-18 02:55:21.764 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 02:55:21.764 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 02:55:21.764 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 119 ms, distance = 0.549 mm, average velocity = 4.610 mm/sec
17-03-18 02:55:24.764 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:55:24.764 -07 000000606 INF: FPGA: Recv YRDPOS 154387
17-03-18 02:55:24.774 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:55:24.774 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:55:24.794 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:55:24.794 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 02:55:24.794 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3167 ms
17-03-18 02:55:24.804 -07 000000610 INF: =================== Cycle #106, Flow Cell Temp 60° ===================
17-03-18 02:55:24.804 -07 000000610 INF: =================== Cycle #106, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 02:55:25.054 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:55:25.054 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-18 02:55:25.064 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:55:25.064 -07 000000610 INF: =================== Cycle #106, Flow Cell Temp 60° ===================
17-03-18 02:55:25.064 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:55:25.064 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:55:25.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:55:25.094 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:55:25.094 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 02:55:25.094 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:55:25.394 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:55:25.414 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:55:25.414 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:55:25.464 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:55:25.484 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:55:25.484 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:55:25.534 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.983999,
17-03-18 02:55:25.584 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:55:25.584 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:55:25.584 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:25.614 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:55:25.614 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:55:25.614 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:55:25.744 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:55:25.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:26.524 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:55:26.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1560, R2=1624, Total=3184. Warn if over 250 bubbles per interval.
17-03-18 02:55:28.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:28.944 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:29.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:29.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:29.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:29.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:29.844 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:55:29.844 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:55:29.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:30.004 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:55:30.004 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:55:30.134 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:30.164 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:55:30.164 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:55:30.164 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:55:30.294 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:55:30.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:30.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:30.784 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:30.784 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:55:30.784 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:55:30.894 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.016692,
17-03-18 02:55:31.524 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:55:31.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1561, R2=1625, Total=3186. Warn if over 250 bubbles per interval.
17-03-18 02:55:32.004 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:55:32.004 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 02:55:32.004 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:55:32.024 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:55:32.024 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 02:55:32.024 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 02:55:32.154 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:55:32.174 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 02:55:32.174 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 02:55:32.224 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:55:32.244 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:55:32.244 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:55:32.344 -07 000000610 INF: =================== Cycle #106, Pumping Reagent CMS (4) ===================
17-03-18 02:55:32.344 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:55:32.344 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:32.374 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:55:32.374 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:55:32.374 -07 000000610 INF: =================== Cycle #106, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 02:55:32.504 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:55:32.544 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:33.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:34.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:34.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:34.464 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:34.464 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 02:55:34.464 -07 000000610 INF: =================== Cycle #106, Pumping Reagent CMS (4) ===================
17-03-18 02:55:34.594 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:34.624 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:55:34.624 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:55:34.754 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:34.784 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:55:34.784 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:55:34.784 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:55:34.914 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:55:34.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:35.374 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:35.404 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:35.404 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:55:35.404 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:55:36.254 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.011254,
17-03-18 02:55:36.524 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 02:55:36.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1563, R2=1627, Total=3190. Warn if over 250 bubbles per interval.
17-03-18 02:55:36.624 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:55:36.624 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:55:36.624 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:55:36.644 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 02:55:36.644 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 02:55:36.644 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 02:55:36.794 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:55:36.814 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 02:55:36.814 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 02:55:36.864 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:55:36.884 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:55:36.884 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:55:36.984 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:55:36.984 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:55:36.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:37.014 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:55:37.014 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:55:37.014 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:55:37.144 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:55:37.184 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:38.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:38.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:38.084 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 02:55:38.084 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:55:38.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:38.244 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:55:38.244 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:55:38.374 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:38.404 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:55:38.404 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:55:38.404 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:55:38.534 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:55:38.564 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:38.994 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:39.024 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:39.024 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:55:39.024 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:55:39.024 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:55:39.024 -07 000000430 INF: WaitCommand(10000) start
17-03-18 02:55:39.024 -07 000000424 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:55:40.244 -07 000000424 INF: AsyncDelayTimer waited 1213ms
17-03-18 02:55:40.244 -07 000000424 INF: LanePump: Xmit /1?\r
17-03-18 02:55:40.274 -07 000000424 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:55:40.274 -07 000000424 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:55:40.404 -07 000000424 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:55:40.444 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:41.524 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 02:55:41.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1564, R2=1627, Total=3191. Warn if over 250 bubbles per interval.
17-03-18 02:55:41.614 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.014009,
17-03-18 02:55:41.974 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:42.004 -07 000000424 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:42.424 -07 000000424 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:42.454 -07 000000424 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:42.454 -07 000000424 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:55:42.454 -07 000000424 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:55:42.454 -07 000000424 INF: ===================  ===================
17-03-18 02:55:46.524 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:55:46.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1565, R2=1628, Total=3193. Warn if over 250 bubbles per interval.
17-03-18 02:55:46.974 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.003063,
17-03-18 02:55:49.034 -07 000000430 INF: WaitCommand(10000) end
17-03-18 02:55:49.034 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:55:49.034 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 02:55:49.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:49.064 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:55:49.064 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:55:49.064 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:55:49.194 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 02:55:49.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:51.524 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-18 02:55:51.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1566, R2=1630, Total=3196. Warn if over 250 bubbles per interval.
17-03-18 02:55:52.334 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.030322,
17-03-18 02:55:55.364 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:55.394 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:55.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:55.844 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:56.264 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:56.294 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:56.524 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-18 02:55:56.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:55:56.714 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:56.744 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:55:57.164 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:57.194 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:57.194 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 02:55:57.194 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:55:57.324 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:57.354 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:55:57.354 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:55:57.484 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:57.514 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:55:57.514 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:55:57.514 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:55:57.644 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:55:57.674 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:57.694 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.05755,
17-03-18 02:55:58.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:55:58.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:55:58.134 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:55:58.134 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:55:59.354 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:55:59.354 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 02:55:59.354 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:55:59.374 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:55:59.374 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 02:55:59.374 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 02:55:59.584 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:55:59.604 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 02:55:59.604 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 02:55:59.654 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:55:59.674 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:55:59.674 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:55:59.774 -07 000000610 INF: =================== Cycle #106, Pumping Reagent IMT (1) ===================
17-03-18 02:55:59.774 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:55:59.774 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:55:59.814 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 02:55:59.814 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 02:55:59.814 -07 000000610 INF: =================== Cycle #106, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 02:55:59.944 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:55:59.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:56:01.424 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:56:01.454 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:56:01.524 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:01.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:01.874 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:56:01.904 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:01.904 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:56:01.904 -07 000000610 INF: =================== Cycle #106, Pumping Reagent IMT (1) ===================
17-03-18 02:56:02.034 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:56:02.064 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:56:02.064 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:56:02.194 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:56:02.224 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:56:02.224 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:56:02.224 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:56:02.354 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:56:02.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:02.814 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:56:02.844 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:02.844 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:56:02.844 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:56:03.054 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.024884,
17-03-18 02:56:04.064 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:56:04.064 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:56:04.064 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:56:04.084 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 02:56:04.084 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 02:56:04.084 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:56:04.314 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:56:04.334 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 02:56:04.334 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 02:56:04.384 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:56:04.404 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:56:04.404 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:56:04.504 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:56:04.504 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:56:04.504 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:56:04.534 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 02:56:04.534 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 02:56:04.534 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:56:04.664 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:56:04.704 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:56:05.574 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:56:05.604 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:05.604 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:56:05.604 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:56:05.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:56:05.764 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:56:05.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:56:05.894 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:56:05.924 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:56:05.924 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:56:05.924 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:56:06.054 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:56:06.084 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:06.514 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:56:06.524 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:06.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:06.544 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:06.544 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:56:06.544 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:56:06.544 -07 000000610 INF: =================== Cycle #106, Flow Cell Temp 65° ===================
17-03-18 02:56:06.544 -07 000000610 INF: =================== Cycle #106, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 02:56:06.544 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 02:56:06.544 -07 000000444 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:56:06.554 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:56:06.554 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:56:06.554 -07 000000467 INF: FPGA: Recv TEC2EN 
17-03-18 02:56:06.564 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:56:06.564 -07 000000610 INF: =================== Cycle #106, Flow Cell Temp 65° ===================
17-03-18 02:56:06.564 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:56:06.564 -07 000000610 INF: WaitCommand(30000) start
17-03-18 02:56:08.414 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.009895,
17-03-18 02:56:11.524 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:11.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:13.774 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.007176,
17-03-18 02:56:16.524 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:16.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:19.134 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.979922,
17-03-18 02:56:21.524 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:21.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:24.494 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.999021,
17-03-18 02:56:26.524 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:26.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:29.854 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.027603,
17-03-18 02:56:31.524 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:31.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:35.214 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.990831,
17-03-18 02:56:36.524 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:36.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:36.574 -07 000000610 INF: WaitCommand(30000) end
17-03-18 02:56:36.574 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:56:36.574 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 02:56:36.674 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:56:36.704 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 02:56:36.704 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 02:56:36.704 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:56:36.834 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 02:56:36.874 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:56:37.414 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:56:37.444 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:37.444 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 02:56:37.444 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:56:37.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:56:37.604 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:56:37.604 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:56:37.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:56:37.764 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:56:37.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:56:37.764 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:56:37.894 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:56:37.924 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:38.354 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:56:38.384 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:38.384 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:56:38.384 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:56:38.384 -07 000000590 INF: WaitCommand(30000) start
17-03-18 02:56:38.384 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:56:38.384 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:56:39.604 -07 000000462 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:56:39.604 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-18 02:56:39.634 -07 000000462 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 02:56:39.634 -07 000000462 INF: LanePump: Current Position of Pump is: 1920
17-03-18 02:56:39.764 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:56:39.804 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:56:40.574 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.009895,
17-03-18 02:56:41.524 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:41.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:42.144 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 02:56:42.174 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:56:42.594 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-18 02:56:42.624 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:56:42.624 -07 000000462 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 02:56:42.624 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:56:42.624 -07 000000462 INF: ===================  ===================
17-03-18 02:56:45.934 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.02213,
17-03-18 02:56:46.524 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:46.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:51.294 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.99219,
17-03-18 02:56:51.524 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:51.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:56.524 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:56:56.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:56:56.654 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.973092,
17-03-18 02:57:01.524 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:57:01.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:57:02.014 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.996267,
17-03-18 02:57:06.524 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:57:06.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:57:07.374 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.981281,
17-03-18 02:57:08.394 -07 000000590 INF: WaitCommand(30000) end
17-03-18 02:57:08.394 -07 000000610 INF: =================== Cycle #106, Flow Cell Temp 22° ===================
17-03-18 02:57:08.394 -07 000000610 INF: =================== Cycle #106, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 02:57:08.394 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 02:57:08.394 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-18 02:57:08.404 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:57:08.404 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 02:57:08.404 -07 000000569 INF: FPGA: Recv TEC2EN 
17-03-18 02:57:08.414 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:08.414 -07 000000610 INF: =================== Cycle #106, Flow Cell Temp 22° ===================
17-03-18 02:57:08.414 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:57:08.414 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:57:08.414 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 02:57:08.414 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:57:08.454 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 02:57:08.454 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 02:57:08.454 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:57:08.584 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 02:57:08.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:57:11.524 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:57:11.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1568, R2=1632, Total=3200. Warn if over 250 bubbles per interval.
17-03-18 02:57:11.754 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:11.784 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:57:12.204 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:12.234 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:57:12.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:12.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:12.684 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 02:57:12.684 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:57:12.734 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.99219,
17-03-18 02:57:12.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:57:12.844 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:57:12.844 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:57:12.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:57:13.004 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:57:13.004 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:57:13.004 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:57:13.134 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:57:13.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:13.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:13.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:13.624 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 02:57:13.624 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:57:14.844 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 02:57:14.844 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 02:57:14.844 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:57:14.864 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:57:14.864 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 02:57:14.864 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 02:57:15.014 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:57:15.034 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:57:15.034 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:57:15.084 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:57:15.104 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:57:15.104 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:57:15.204 -07 000000610 INF: =================== Cycle #106, Pumping Reagent USM (2) ===================
17-03-18 02:57:15.204 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 02:57:15.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:57:15.234 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 02:57:15.234 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 02:57:15.234 -07 000000610 INF: =================== Cycle #106, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 02:57:15.364 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 02:57:15.404 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:57:16.524 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-18 02:57:16.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1569, R2=1633, Total=3202. Warn if over 250 bubbles per interval.
17-03-18 02:57:16.844 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:16.874 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:57:17.294 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:17.324 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:17.324 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 02:57:17.324 -07 000000610 INF: =================== Cycle #106, Pumping Reagent USM (2) ===================
17-03-18 02:57:17.454 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:57:17.484 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:57:17.484 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:57:17.614 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:57:17.644 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:57:17.644 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:57:17.644 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:57:17.774 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:57:17.804 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:18.094 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.994908,
17-03-18 02:57:18.234 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:18.264 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:18.264 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:57:18.264 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:57:19.484 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 02:57:19.484 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 02:57:19.484 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:57:19.504 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 02:57:19.504 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 02:57:19.504 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 02:57:19.654 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:57:19.674 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 02:57:19.674 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 02:57:19.724 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:57:19.744 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:57:19.744 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 02:57:19.844 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:57:19.844 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 02:57:19.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:57:19.874 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 02:57:19.874 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 02:57:19.874 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 02:57:20.004 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 02:57:20.044 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:57:20.914 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:20.944 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:20.944 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 02:57:20.944 -07 000000610 INF: =================== Cycle #106, Pumping Reagent PR2 (3) ===================
17-03-18 02:57:21.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:57:21.104 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:57:21.104 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:57:21.234 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 02:57:21.264 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:57:21.264 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:57:21.264 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 02:57:21.394 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 02:57:21.424 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:21.524 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-18 02:57:21.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1633, Total=3203. Warn if over 250 bubbles per interval.
17-03-18 02:57:21.854 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:21.884 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:21.884 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 02:57:21.884 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:57:21.884 -07 000000626 INF: WaitCommand(10000) start
17-03-18 02:57:21.884 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:57:21.884 -07 000000590 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 02:57:23.104 -07 000000590 INF: AsyncDelayTimer waited 1216ms
17-03-18 02:57:23.104 -07 000000590 INF: LanePump: Xmit /1?\r
17-03-18 02:57:23.134 -07 000000590 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 02:57:23.134 -07 000000590 INF: LanePump: Current Position of Pump is: 1110
17-03-18 02:57:23.264 -07 000000590 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 02:57:23.304 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:57:23.454 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.983999,
17-03-18 02:57:24.834 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:24.864 -07 000000590 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 02:57:25.284 -07 000000590 INF: LanePump: Xmit /1Q\r
17-03-18 02:57:25.314 -07 000000590 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 02:57:25.314 -07 000000590 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 02:57:25.314 -07 000000590 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 02:57:25.314 -07 000000590 INF: ===================  ===================
17-03-18 02:57:26.524 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:57:26.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1633, Total=3203. Warn if over 250 bubbles per interval.
17-03-18 02:57:28.814 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.99219,
17-03-18 02:57:31.524 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-18 02:57:31.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:57:31.894 -07 000000626 INF: WaitCommand(10000) end
17-03-18 02:57:31.894 -07 000000610 INF: =================== Cycle #106, Imaging ===================
17-03-18 02:57:31.894 -07 000000610 INF: Imaging Cycle 106: ScanTilesCommand Cycle 106 time start.
17-03-18 02:57:31.894 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 02:57:31.894 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:57:31.924 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 02:57:31.924 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 02:57:31.924 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 02:57:32.224 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 02:57:32.244 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 02:57:32.244 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 02:57:32.294 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 02:57:32.314 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 02:57:32.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:32.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:32.314 -07 000000430 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 02:57:32.314 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:32.314 -07 000000430 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 02:57:32.324 -07 000000618 INF: FPGA: Recv EXLED1ON 
17-03-18 02:57:32.324 -07 000000430 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:57:32.324 -07 000000430 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 02:57:32.324 -07 000000467 INF: FPGA: Recv EXLED1ADCR 23139
17-03-18 02:57:32.334 -07 000000430 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:32.334 -07 000000430 INF: RedLED: Using Red data: Photodiode ADC 23139 --> 7.4 mW (old method), or 205.1 mW (new method). Difference = 197.7 mW
17-03-18 02:57:32.334 -07 000000430 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 02:57:32.334 -07 000000444 INF: FPGA: Recv EXLED1OFF 
17-03-18 02:57:32.344 -07 000000430 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:57:32.344 -07 000000430 INF: RedLED: LED was on for 20 ms
17-03-18 02:57:32.344 -07 000000430 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-18 02:57:32.344 -07 000000430 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 02:57:32.344 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:32.344 -07 000000430 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 02:57:32.344 -07 000000569 INF: FPGA: Recv EXLED2ON 
17-03-18 02:57:32.354 -07 000000430 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:57:32.354 -07 000000430 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:57:32.354 -07 000000591 INF: FPGA: Recv EXLED1ADCR 2102
17-03-18 02:57:32.364 -07 000000430 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:32.364 -07 000000430 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-18 02:57:32.364 -07 000000430 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 02:57:32.364 -07 000000561 INF: FPGA: Recv EXLED2OFF 
17-03-18 02:57:32.374 -07 000000430 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:32.374 -07 000000430 INF: GreenLED: LED was on for 20 ms
17-03-18 02:57:32.374 -07 000000430 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 02:57:32.374 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:57:32.374 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-18 02:57:32.384 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:57:32.384 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 02:57:32.884 -07 000000430 INF: FPGA: Recv EMOUT
17-03-18 02:57:32.884 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:57:32.884 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 02:57:32.884 -07 000000590 INF: FPGA: Recv EMCUR 
17-03-18 02:57:32.894 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:57:32.894 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:57:32.894 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126522716727935. ------
17-03-18 02:57:32.894 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:57:32.894 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17848 mm
17-03-18 02:57:32.894 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:57:32.894 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:57:32.894 -07 000000629 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 02:57:32.894 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 38990, sync = True, waitForSettling = False)
17-03-18 02:57:32.894 -07 000000579 INF: Z Motor: Moving to -0.178485 mm, started at -0.126523 mm, distance = -51.96 um
17-03-18 02:57:32.904 -07 000000579 INF: FPGA: Xmit ZDACW 38990\n [Z Motor]
17-03-18 02:57:32.904 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:57:32.904 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:57:32.904 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:57:32.914 -07 000000579 INF: FPGA: 'ZDACW 38990' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:57:32.914 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:32.914 -07 000000606 INF: FPGA: Recv YRDPOS 154387
17-03-18 02:57:32.924 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:57:32.924 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:57:32.924 -07 000000629 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:32.924 -07 000000629 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 02:57:32.924 -07 000000629 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:57:32.934 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:32.934 -07 000000606 INF: FPGA: Recv ZDACR 38990
17-03-18 02:57:32.944 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:57:32.944 -07 000000579 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-18 02:57:32.944 -07 000000629 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:57:33.124 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:57:33.124 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-18 02:57:34.174 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.99219,
17-03-18 02:57:34.624 -07 000000618 INF: FPGA: Recv YMVTO 122703 24783
17-03-18 02:57:34.624 -07 000000629 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1678 ms to get response, and 1708 ms overall
17-03-18 02:57:34.624 -07 000000629 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:57:34.624 -07 000000629 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-18 02:57:34.624 -07 000000629 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1708 ms, distance = 15.472 mm, average velocity = 9.058 mm/sec
17-03-18 02:57:36.534 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:57:36.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:57:37.474 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:37.474 -07 000000561 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:57:37.484 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:37.484 -07 000000629 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:37.514 -07 000000629 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:57:37.514 -07 000000629 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-18 02:57:37.514 -07 000000629 INF: Y Motor: Moved to 59.9102 after 4614 ms
17-03-18 02:57:37.514 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178485 mm (DAC = 38990)
17-03-18 02:57:37.514 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.514 -07 000000455 INF: FPGA: Recv ZSGSRD 37082
17-03-18 02:57:37.524 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:57:37.524 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.524 -07 000000444 INF: FPGA: Recv ZSGSRD 37076
17-03-18 02:57:37.534 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.534 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.534 -07 000000501 INF: FPGA: Recv ZSGSRD 37076
17-03-18 02:57:37.544 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.544 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.544 -07 000000576 INF: FPGA: Recv ZSGSRD 37072
17-03-18 02:57:37.554 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.554 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.554 -07 000000618 INF: FPGA: Recv ZSGSRD 37075
17-03-18 02:57:37.564 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.564 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.564 -07 000000455 INF: FPGA: Recv ZSGSRD 37078
17-03-18 02:57:37.574 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.574 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.574 -07 000000590 INF: FPGA: Recv ZSGSRD 37074
17-03-18 02:57:37.584 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.584 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.584 -07 000000461 INF: FPGA: Recv ZSGSRD 37070
17-03-18 02:57:37.594 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.594 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.594 -07 000000462 INF: FPGA: Recv ZSGSRD 37076
17-03-18 02:57:37.604 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.604 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:37.604 -07 000000467 INF: FPGA: Recv ZSGSRD 37071
17-03-18 02:57:37.614 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.614 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:37.614 -07 000000444 INF: FPGA: Recv ZPIEZORD 33324
17-03-18 02:57:37.624 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:37.624 -07 000000424 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.3 V.
17-03-18 02:57:37.624 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37075 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37076 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37070 (-177.6 uncal um), Max = 37082 (-177.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:57:37.624 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37075, posNoise = 7, negNoise = 5
17-03-18 02:57:37.624 -07 000000424 INF: Z Motor: After move to -0.178485, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:37.624 -07 000000424 INF: Z Motor: Settle wait time = 4617 ms, measure time = 105 ms (allowed 150 ms), total time = 4722 ms
17-03-18 02:57:37.624 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:57:37.674 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4774 ms
17-03-18 02:57:37.674 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:57:37.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:37.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:37.674 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:37.674 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:37.674 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:57:37.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:57:37.674 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:57:37.674 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:57:37.704 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 02:57:37.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:57:37.704 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 02:57:37.704 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:57:37.714 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:57:37.724 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 02:57:37.724 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:57:37.774 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:57:38.074 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:57:38.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:57:38.074 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:57:38.074 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-18 02:57:38.114 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:57:38.114 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 02:57:38.114 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 390 ms overall
17-03-18 02:57:38.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:57:38.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:38.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:57:38.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-18 02:57:38.214 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:57:38.214 -07 000000618 INF: Image SNR check: start
17-03-18 02:57:38.214 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:57:38.224 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:57:38.224 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:57:38.224 -07 000000618 INF: Image SNR check: pass  [peak (Max-Min)=146.53]
17-03-18 02:57:38.224 -07 000000618 INF: Autofocus start
17-03-18 02:57:38.224 -07 000000618 INF: MeasureProfile start
17-03-18 02:57:38.234 -07 000000618 INF: MeasureProfile done
17-03-18 02:57:38.234 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-18 02:57:38.234 -07 000000618 INF: Autofocus finished
17-03-18 02:57:38.424 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:57:38.424 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:57:38.424 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.178501017166922. ----------
17-03-18 02:57:38.424 -07 000000610 INF: Cycle	106	Tile	1	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:57:38.434 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37505, sync = True, waitForSettling = True)
17-03-18 02:57:38.434 -07 000000610 INF: Z Motor: Moving to -0.171687 mm, started at -0.178501 mm, distance = 6.81 um
17-03-18 02:57:38.434 -07 000000610 INF: FPGA: Xmit ZDACW 37505\n [Z Motor]
17-03-18 02:57:38.434 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:57:38.444 -07 000000610 INF: FPGA: 'ZDACW 37505' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:38.444 -07 000000502 INF: FPGA: Recv ZDACR 37505
17-03-18 02:57:38.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:57:38.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.604 -07 000000569 INF: FPGA: Recv ZSGSRD 36017
17-03-18 02:57:38.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:38.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.614 -07 000000629 INF: FPGA: Recv ZSGSRD 36012
17-03-18 02:57:38.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.624 -07 000000626 INF: FPGA: Recv ZSGSRD 36017
17-03-18 02:57:38.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.634 -07 000000629 INF: FPGA: Recv ZSGSRD 36019
17-03-18 02:57:38.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.644 -07 000000626 INF: FPGA: Recv ZSGSRD 36010
17-03-18 02:57:38.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.654 -07 000000512 INF: FPGA: Recv ZSGSRD 36018
17-03-18 02:57:38.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.664 -07 000000424 INF: FPGA: Recv ZSGSRD 36020
17-03-18 02:57:38.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:57:38.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.674 -07 000000626 INF: FPGA: Recv ZSGSRD 36019
17-03-18 02:57:38.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.684 -07 000000618 INF: FPGA: Recv ZSGSRD 36015
17-03-18 02:57:38.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:38.704 -07 000000569 INF: FPGA: Recv ZSGSRD 36020
17-03-18 02:57:38.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:57:38.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:38.714 -07 000000561 INF: FPGA: Recv ZPIEZORD 31899
17-03-18 02:57:38.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:38.724 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.723 V. Piezo Error = -9.1 V.
17-03-18 02:57:38.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36017 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36018 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36010 (-170.8 uncal um), Max = 36020 (-170.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:57:38.724 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36017, posNoise = 3, negNoise = 7
17-03-18 02:57:38.724 -07 000000610 INF: Z Motor: After move to -0.171687, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:38.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 02:57:38.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:38.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:38.724 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:38.724 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:38.724 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:57:38.724 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:57:38.724 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:57:38.724 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:57:38.724 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:57:38.724 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:57:38.724 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:57:38.724 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:57:38.724 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:57:38.724 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:57:38.744 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:57:38.744 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:57:38.744 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 02:57:38.744 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:57:38.754 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:57:38.754 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:57:38.764 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:57:38.764 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-18 02:57:38.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37681 150\n [Camera]
17-03-18 02:57:38.964 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:57:39.364 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:57:39.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:57:39.364 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:39.364 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:57:39.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:57:39.374 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:39.504 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:39.504 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2201991440, 0x0, 391868352) start.
17-03-18 02:57:39.504 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:39.504 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 02:57:39.534 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.996267,
17-03-18 02:57:39.554 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37681 785
17-03-18 02:57:39.704 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:57:39.894 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2201991440, 0x0, 391868352) end. Duration was 394 ms.
17-03-18 02:57:39.894 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:57:39.894 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:39.904 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 394 ms.
17-03-18 02:57:39.904 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:57:39.904 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:39.904 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:39.904 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-18 02:57:39.904 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 02:57:39.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 02:57:39.904 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:39.904 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:39.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 02:57:39.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 02:57:39.904 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:39.914 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:39.914 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:57:39.914 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 544 ms.
17-03-18 02:57:39.914 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:39.914 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:57:40.094 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:57:40.094 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:57:40.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37681 150' command took 2 ms to send, 1323 ms to get response, and 1326 ms overall
17-03-18 02:57:40.094 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172005
17-03-18 02:57:40.094 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17200 mm
17-03-18 02:57:40.094 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:57:40.094 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:57:40.094 -07 000000462 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-18 02:57:40.094 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:40.094 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37574, sync = True, waitForSettling = False)
17-03-18 02:57:40.094 -07 000000626 INF: Z Motor: Moving to -0.172003 mm, started at -0.171704 mm, distance = -0.30 um
17-03-18 02:57:40.104 -07 000000626 INF: FPGA: Xmit ZDACW 37574\n [Z Motor]
17-03-18 02:57:40.104 -07 000000502 INF: FPGA: Recv YRDPOS 122696
17-03-18 02:57:40.104 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 02:57:40.104 -07 000000462 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:40.104 -07 000000462 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:57:40.104 -07 000000462 INF: Y Motor: Moving 1332 steps2
17-03-18 02:57:40.104 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:57:40.114 -07 000000626 INF: FPGA: 'ZDACW 37574' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:57:40.114 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:40.114 -07 000000606 INF: FPGA: Recv ZDACR 37574
17-03-18 02:57:40.124 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:40.124 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:57:40.124 -07 000000626 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 02:57:40.314 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:57:40.314 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:57:40.314 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:40.314 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:57:40.314 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:57:40.314 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 02:57:40.314 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:57:40.314 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:40.324 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:57:40.334 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 423 ms.
17-03-18 02:57:40.494 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:57:40.494 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-18 02:57:40.534 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:40.534 -07 000000591 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:57:40.544 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:57:40.544 -07 000000462 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:40.544 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:57:40.544 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.832 mm, average velocity = 2.113 mm/sec
17-03-18 02:57:41.494 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:41.494 -07 000000606 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:57:41.504 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:41.504 -07 000000462 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:41.534 -07 000000462 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:57:41.534 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:57:41.534 -07 000000462 INF: Y Motor: Moved to 60.7324 after 1432 ms (table move)
17-03-18 02:57:41.534 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:57:41.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:57:41.534 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172003 mm (DAC = 37574)
17-03-18 02:57:41.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.534 -07 000000606 INF: FPGA: Recv ZSGSRD 36069
17-03-18 02:57:41.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:57:41.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.544 -07 000000590 INF: FPGA: Recv ZSGSRD 36065
17-03-18 02:57:41.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.554 -07 000000591 INF: FPGA: Recv ZSGSRD 36063
17-03-18 02:57:41.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.564 -07 000000626 INF: FPGA: Recv ZSGSRD 36068
17-03-18 02:57:41.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.574 -07 000000444 INF: FPGA: Recv ZSGSRD 36070
17-03-18 02:57:41.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.584 -07 000000606 INF: FPGA: Recv ZSGSRD 36067
17-03-18 02:57:41.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.594 -07 000000561 INF: FPGA: Recv ZSGSRD 36072
17-03-18 02:57:41.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:57:41.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.604 -07 000000444 INF: FPGA: Recv ZSGSRD 36062
17-03-18 02:57:41.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.614 -07 000000462 INF: FPGA: Recv ZSGSRD 36065
17-03-18 02:57:41.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.624 -07 000000590 INF: FPGA: Recv ZSGSRD 36069
17-03-18 02:57:41.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.634 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:41.634 -07 000000591 INF: FPGA: Recv ZPIEZORD 31976
17-03-18 02:57:41.644 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.644 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.733 V. Piezo Error = -9.0 V.
17-03-18 02:57:41.644 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36067 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36068 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36062 (-171.1 uncal um), Max = 36072 (-171.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:57:41.644 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36067, posNoise = 5, negNoise = 5
17-03-18 02:57:41.644 -07 000000610 INF: Z Motor: After move to -0.172003, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:41.644 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 108 ms (allowed 150 ms), total time = 1542 ms
17-03-18 02:57:41.644 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:57:41.694 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 02:57:41.694 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:57:41.694 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.172025411328027. ----------
17-03-18 02:57:41.694 -07 000000610 INF: Cycle	106	Tile	2	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:57:41.694 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37398, sync = True, waitForSettling = True)
17-03-18 02:57:41.694 -07 000000610 INF: Z Motor: Moving to -0.171197 mm, started at -0.172025 mm, distance = 0.83 um
17-03-18 02:57:41.694 -07 000000610 INF: FPGA: Xmit ZDACW 37398\n [Z Motor]
17-03-18 02:57:41.694 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:57:41.704 -07 000000610 INF: FPGA: 'ZDACW 37398' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:57:41.704 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:41.704 -07 000000576 INF: FPGA: Recv ZDACR 37398
17-03-18 02:57:41.714 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.714 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:57:41.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.864 -07 000000561 INF: FPGA: Recv ZSGSRD 35942
17-03-18 02:57:41.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:41.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.874 -07 000000430 INF: FPGA: Recv ZSGSRD 35942
17-03-18 02:57:41.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.884 -07 000000462 INF: FPGA: Recv ZSGSRD 35943
17-03-18 02:57:41.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.894 -07 000000444 INF: FPGA: Recv ZSGSRD 35944
17-03-18 02:57:41.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.904 -07 000000569 INF: FPGA: Recv ZSGSRD 35941
17-03-18 02:57:41.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.914 -07 000000424 INF: FPGA: Recv ZSGSRD 35937
17-03-18 02:57:41.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.924 -07 000000618 INF: FPGA: Recv ZSGSRD 35940
17-03-18 02:57:41.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.934 -07 000000502 INF: FPGA: Recv ZSGSRD 35939
17-03-18 02:57:41.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.944 -07 000000579 INF: FPGA: Recv ZSGSRD 35945
17-03-18 02:57:41.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:41.954 -07 000000576 INF: FPGA: Recv ZSGSRD 35943
17-03-18 02:57:41.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:41.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:41.964 -07 000000462 INF: FPGA: Recv ZPIEZORD 31805
17-03-18 02:57:41.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:57:41.974 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.1 V.
17-03-18 02:57:41.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35942 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35942 (-170.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35937 (-170.3 uncal um), Max = 35945 (-170.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:57:41.974 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35942, posNoise = 3, negNoise = 5
17-03-18 02:57:41.974 -07 000000610 INF: Z Motor: After move to -0.171197, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:41.974 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:57:41.974 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:41.974 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:41.974 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:41.974 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:57:41.974 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:57:41.974 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:41.974 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:57:41.974 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:57:41.974 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:57:41.974 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:57:41.974 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:57:41.974 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:57:41.974 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:57:41.974 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:57:41.984 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:57:41.984 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:57:41.994 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:57:41.994 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:57:41.994 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:57:41.994 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:57:41.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37574 150\n [Camera]
17-03-18 02:57:42.194 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:57:42.594 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:57:42.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:57:42.594 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:42.594 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:42.594 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2237413704, 0x0, 391868352) start.
17-03-18 02:57:42.604 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:57:42.604 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:57:42.604 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:42.604 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:42.604 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:57:42.794 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37574 785
17-03-18 02:57:42.934 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:57:42.994 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2237413704, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:57:42.994 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:57:42.994 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:43.004 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:57:43.004 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:57:43.004 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:57:43.004 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:57:43.004 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:43.004 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:57:43.014 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:57:43.134 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:57:43.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:57:43.134 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:43.134 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:43.134 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:57:43.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:57:43.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:57:43.134 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:43.264 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:43.264 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:57:43.324 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:57:43.324 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:57:43.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37574 150' command took 4 ms to send, 1314 ms to get response, and 1328 ms overall
17-03-18 02:57:43.324 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.171856
17-03-18 02:57:43.324 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17186 mm
17-03-18 02:57:43.324 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:57:43.324 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:57:43.324 -07 000000430 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-18 02:57:43.324 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:43.324 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 37542, sync = True, waitForSettling = False)
17-03-18 02:57:43.334 -07 000000590 INF: Z Motor: Moving to -0.171856 mm, started at -0.171222 mm, distance = -0.63 um
17-03-18 02:57:43.334 -07 000000590 INF: FPGA: Xmit ZDACW 37542\n [Z Motor]
17-03-18 02:57:43.334 -07 000000561 INF: FPGA: Recv YRDPOS 124380
17-03-18 02:57:43.334 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:57:43.334 -07 000000430 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:43.334 -07 000000430 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:57:43.334 -07 000000430 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:57:43.334 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:57:43.344 -07 000000590 INF: FPGA: 'ZDACW 37542' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:43.344 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:43.344 -07 000000467 INF: FPGA: Recv ZDACR 37542
17-03-18 02:57:43.354 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:43.354 -07 000000590 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 02:57:43.354 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:57:43.534 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 02:57:43.534 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:57:43.534 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:43.534 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:57:43.534 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:57:43.664 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms.
17-03-18 02:57:43.664 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:57:43.664 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:43.664 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:57:43.664 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-18 02:57:43.734 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:57:43.734 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-18 02:57:43.774 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:43.774 -07 000000424 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:57:43.784 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:57:43.784 -07 000000430 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:43.784 -07 000000430 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:57:43.784 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-18 02:57:44.734 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:44.734 -07 000000629 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:57:44.744 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:44.744 -07 000000430 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:44.764 -07 000000430 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:57:44.764 -07 000000430 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:57:44.764 -07 000000430 INF: Y Motor: Moved to 61.5630 after 1439 ms (table move)
17-03-18 02:57:44.774 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171856 mm (DAC = 37542)
17-03-18 02:57:44.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.774 -07 000000590 INF: FPGA: Recv ZSGSRD 36041
17-03-18 02:57:44.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:57:44.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.784 -07 000000629 INF: FPGA: Recv ZSGSRD 36034
17-03-18 02:57:44.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.794 -07 000000561 INF: FPGA: Recv ZSGSRD 36044
17-03-18 02:57:44.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.804 -07 000000501 INF: FPGA: Recv ZSGSRD 36042
17-03-18 02:57:44.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.814 -07 000000569 INF: FPGA: Recv ZSGSRD 36048
17-03-18 02:57:44.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.824 -07 000000626 INF: FPGA: Recv ZSGSRD 36044
17-03-18 02:57:44.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.834 -07 000000629 INF: FPGA: Recv ZSGSRD 36042
17-03-18 02:57:44.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.844 -07 000000467 INF: FPGA: Recv ZSGSRD 36041
17-03-18 02:57:44.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.854 -07 000000591 INF: FPGA: Recv ZSGSRD 36039
17-03-18 02:57:44.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:44.864 -07 000000606 INF: FPGA: Recv ZSGSRD 36041
17-03-18 02:57:44.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:44.874 -07 000000618 INF: FPGA: Recv ZPIEZORD 31961
17-03-18 02:57:44.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.884 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.729 V. Piezo Error = -9.0 V.
17-03-18 02:57:44.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36042 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36042 (-171.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36034 (-170.9 uncal um), Max = 36048 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:57:44.884 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36042, posNoise = 6, negNoise = 8
17-03-18 02:57:44.884 -07 000000610 INF: Z Motor: After move to -0.171856, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:44.884 -07 000000610 INF: Z Motor: Settle wait time = 1441 ms, measure time = 109 ms (allowed 150 ms), total time = 1550 ms
17-03-18 02:57:44.884 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:57:44.894 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.999021,
17-03-18 02:57:44.934 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-18 02:57:44.934 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:57:44.934 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.171864806024483. ----------
17-03-18 02:57:44.934 -07 000000610 INF: Cycle	106	Tile	3	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:57:44.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37365, sync = True, waitForSettling = True)
17-03-18 02:57:44.934 -07 000000610 INF: Z Motor: Moving to -0.171046 mm, started at -0.171865 mm, distance = 0.82 um
17-03-18 02:57:44.934 -07 000000610 INF: FPGA: Xmit ZDACW 37365\n [Z Motor]
17-03-18 02:57:44.934 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:57:44.944 -07 000000610 INF: FPGA: 'ZDACW 37365' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:57:44.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:44.944 -07 000000467 INF: FPGA: Recv ZDACR 37365
17-03-18 02:57:44.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:44.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:57:45.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.104 -07 000000590 INF: FPGA: Recv ZSGSRD 35915
17-03-18 02:57:45.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:45.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.114 -07 000000501 INF: FPGA: Recv ZSGSRD 35913
17-03-18 02:57:45.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.124 -07 000000444 INF: FPGA: Recv ZSGSRD 35920
17-03-18 02:57:45.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.134 -07 000000576 INF: FPGA: Recv ZSGSRD 35917
17-03-18 02:57:45.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.144 -07 000000462 INF: FPGA: Recv ZSGSRD 35917
17-03-18 02:57:45.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.154 -07 000000467 INF: FPGA: Recv ZSGSRD 35917
17-03-18 02:57:45.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.164 -07 000000501 INF: FPGA: Recv ZSGSRD 35910
17-03-18 02:57:45.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.174 -07 000000569 INF: FPGA: Recv ZSGSRD 35917
17-03-18 02:57:45.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.184 -07 000000512 INF: FPGA: Recv ZSGSRD 35916
17-03-18 02:57:45.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:45.194 -07 000000629 INF: FPGA: Recv ZSGSRD 35918
17-03-18 02:57:45.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:45.204 -07 000000461 INF: FPGA: Recv ZPIEZORD 31793
17-03-18 02:57:45.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:45.214 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.1 V.
17-03-18 02:57:45.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35916 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35917 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35910 (-170.1 uncal um), Max = 35920 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:57:45.214 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35916, posNoise = 4, negNoise = 6
17-03-18 02:57:45.214 -07 000000610 INF: Z Motor: After move to -0.171046, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:45.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:57:45.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:45.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:45.214 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:45.214 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:45.214 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:57:45.214 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:57:45.214 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:57:45.214 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:57:45.214 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:57:45.214 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:57:45.214 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:57:45.214 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:57:45.224 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:57:45.224 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:57:45.224 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:57:45.224 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:57:45.234 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:57:45.234 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:57:45.234 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:57:45.234 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-18 02:57:45.244 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37542 150\n [Camera]
17-03-18 02:57:45.444 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:57:45.844 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:57:45.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:57:45.844 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:45.844 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:57:45.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:57:45.844 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:45.844 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:45.844 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:57:45.854 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:45.854 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:57:46.034 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37542 785
17-03-18 02:57:46.184 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:57:46.214 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:57:46.214 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 02:57:46.214 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:46.224 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:46.224 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:57:46.224 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:57:46.224 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:57:46.224 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:46.234 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:46.234 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:57:46.374 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:57:46.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:57:46.374 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:46.374 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:46.374 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:57:46.374 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:57:46.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:57:46.374 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:46.374 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:46.374 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:57:46.534 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:57:46.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:57:46.564 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:57:46.564 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:57:46.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37542 150' command took 2 ms to send, 1317 ms to get response, and 1326 ms overall
17-03-18 02:57:46.564 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171374
17-03-18 02:57:46.574 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17137 mm
17-03-18 02:57:46.574 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:57:46.574 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:57:46.574 -07 000000444 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-18 02:57:46.574 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:46.574 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37437, sync = True, waitForSettling = False)
17-03-18 02:57:46.574 -07 000000502 INF: Z Motor: Moving to -0.171376 mm, started at -0.171055 mm, distance = -0.32 um
17-03-18 02:57:46.574 -07 000000561 INF: FPGA: Recv YRDPOS 126081
17-03-18 02:57:46.584 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:57:46.584 -07 000000444 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:46.584 -07 000000502 INF: FPGA: Xmit ZDACW 37437\n [Z Motor]
17-03-18 02:57:46.584 -07 000000444 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:57:46.584 -07 000000444 INF: Y Motor: Moving 1343 steps-20
17-03-18 02:57:46.584 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:57:46.594 -07 000000502 INF: FPGA: 'ZDACW 37437' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:57:46.594 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:46.594 -07 000000576 INF: FPGA: Recv ZDACR 37437
17-03-18 02:57:46.604 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:46.604 -07 000000502 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 02:57:46.604 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:57:46.754 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:57:46.754 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:57:46.754 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:46.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:57:46.754 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:57:46.754 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:46.764 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:46.764 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:57:46.764 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:46.774 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:57:46.974 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:57:46.974 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:57:47.024 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:47.034 -07 000000569 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:57:47.034 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-18 02:57:47.034 -07 000000444 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:47.034 -07 000000444 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:57:47.034 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.104 mm/sec
17-03-18 02:57:47.984 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:47.984 -07 000000606 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:57:47.994 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:47.994 -07 000000444 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:48.014 -07 000000444 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:57:48.014 -07 000000444 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:57:48.014 -07 000000444 INF: Y Motor: Moved to 62.3950 after 1444 ms (table move)
17-03-18 02:57:48.014 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171376 mm (DAC = 37437)
17-03-18 02:57:48.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.024 -07 000000590 INF: FPGA: Recv ZSGSRD 35976
17-03-18 02:57:48.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:48.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.034 -07 000000629 INF: FPGA: Recv ZSGSRD 35972
17-03-18 02:57:48.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.044 -07 000000591 INF: FPGA: Recv ZSGSRD 35966
17-03-18 02:57:48.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.054 -07 000000606 INF: FPGA: Recv ZSGSRD 35962
17-03-18 02:57:48.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.064 -07 000000501 INF: FPGA: Recv ZSGSRD 35965
17-03-18 02:57:48.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.074 -07 000000618 INF: FPGA: Recv ZSGSRD 35965
17-03-18 02:57:48.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.084 -07 000000501 INF: FPGA: Recv ZSGSRD 35965
17-03-18 02:57:48.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.094 -07 000000591 INF: FPGA: Recv ZSGSRD 35967
17-03-18 02:57:48.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.104 -07 000000462 INF: FPGA: Recv ZSGSRD 35968
17-03-18 02:57:48.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.114 -07 000000444 INF: FPGA: Recv ZSGSRD 35978
17-03-18 02:57:48.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:48.124 -07 000000467 INF: FPGA: Recv ZPIEZORD 31839
17-03-18 02:57:48.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.134 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.713 V. Piezo Error = -9.1 V.
17-03-18 02:57:48.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35968 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35966 (-170.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35962 (-170.5 uncal um), Max = 35978 (-170.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:57:48.134 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35968, posNoise = 10, negNoise = 6
17-03-18 02:57:48.134 -07 000000610 INF: Z Motor: After move to -0.171376, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:48.134 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 112 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:57:48.134 -07 000000610 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-18 02:57:48.174 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 02:57:48.174 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:57:48.174 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.171389414325993. ----------
17-03-18 02:57:48.174 -07 000000610 INF: Cycle	106	Tile	4	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:57:48.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37260, sync = True, waitForSettling = True)
17-03-18 02:57:48.174 -07 000000610 INF: Z Motor: Moving to -0.170565 mm, started at -0.171389 mm, distance = 0.82 um
17-03-18 02:57:48.174 -07 000000610 INF: FPGA: Xmit ZDACW 37260\n [Z Motor]
17-03-18 02:57:48.174 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:57:48.184 -07 000000610 INF: FPGA: 'ZDACW 37260' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:57:48.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:48.184 -07 000000512 INF: FPGA: Recv ZDACR 37260
17-03-18 02:57:48.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:57:48.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.344 -07 000000467 INF: FPGA: Recv ZSGSRD 35850
17-03-18 02:57:48.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:48.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.354 -07 000000561 INF: FPGA: Recv ZSGSRD 35845
17-03-18 02:57:48.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.364 -07 000000424 INF: FPGA: Recv ZSGSRD 35846
17-03-18 02:57:48.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.374 -07 000000501 INF: FPGA: Recv ZSGSRD 35839
17-03-18 02:57:48.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.384 -07 000000444 INF: FPGA: Recv ZSGSRD 35837
17-03-18 02:57:48.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.394 -07 000000618 INF: FPGA: Recv ZSGSRD 35846
17-03-18 02:57:48.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.404 -07 000000430 INF: FPGA: Recv ZSGSRD 35839
17-03-18 02:57:48.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.414 -07 000000629 INF: FPGA: Recv ZSGSRD 35842
17-03-18 02:57:48.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.424 -07 000000606 INF: FPGA: Recv ZSGSRD 35839
17-03-18 02:57:48.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:48.434 -07 000000512 INF: FPGA: Recv ZSGSRD 35838
17-03-18 02:57:48.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:48.444 -07 000000576 INF: FPGA: Recv ZPIEZORD 31652
17-03-18 02:57:48.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:48.454 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.2 V.
17-03-18 02:57:48.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35842 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35840 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35837 (-169.7 uncal um), Max = 35850 (-169.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:57:48.454 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35842, posNoise = 8, negNoise = 5
17-03-18 02:57:48.454 -07 000000610 INF: Z Motor: After move to -0.170565, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:48.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:57:48.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:48.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:48.454 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:48.454 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:48.454 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:57:48.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:57:48.454 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:57:48.454 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:57:48.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:57:48.454 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:57:48.454 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:57:48.454 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:57:48.464 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:57:48.464 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:57:48.464 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:57:48.464 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:57:48.474 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:57:48.474 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:57:48.474 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:57:48.474 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:57:48.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37437 150\n [Camera]
17-03-18 02:57:48.674 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:57:49.074 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:57:49.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:57:49.084 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:57:49.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:57:49.084 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:49.084 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:49.084 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 02:57:49.084 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:49.204 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:49.204 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:57:49.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37437 785
17-03-18 02:57:49.424 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:57:49.464 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:57:49.464 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:57:49.464 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:49.474 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:57:49.474 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:57:49.574 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:57:49.574 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:57:49.574 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:49.574 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:57:49.584 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 02:57:49.614 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:57:49.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:57:49.614 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:49.614 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:57:49.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:57:49.614 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:49.634 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:49.634 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:57:49.634 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:49.634 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:57:49.804 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:57:49.804 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:57:49.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37437 150' command took 2 ms to send, 1316 ms to get response, and 1327 ms overall
17-03-18 02:57:49.804 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:57:49.804 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170579963596131. ------
17-03-18 02:57:49.814 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:57:49.814 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17705 mm
17-03-18 02:57:49.814 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:57:49.814 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:57:49.814 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:57:49.814 -07 000000569 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-18 02:57:49.814 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38677, sync = True, waitForSettling = False)
17-03-18 02:57:49.814 -07 000000629 INF: Z Motor: Moving to -0.177052 mm, started at -0.170580 mm, distance = -6.47 um
17-03-18 02:57:49.824 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:57:49.824 -07 000000629 INF: FPGA: Xmit ZDACW 38677\n [Z Motor]
17-03-18 02:57:49.824 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:57:49.834 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:49.834 -07 000000629 INF: FPGA: 'ZDACW 38677' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:57:49.834 -07 000000606 INF: FPGA: Recv YRDPOS 127785
17-03-18 02:57:49.844 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:57:49.844 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 02:57:49.844 -07 000000569 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:49.844 -07 000000569 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:57:49.844 -07 000000569 INF: Y Motor: Moving 1340 steps-16
17-03-18 02:57:49.854 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:49.854 -07 000000591 INF: FPGA: Recv ZDACR 38677
17-03-18 02:57:49.864 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:57:49.864 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:57:49.864 -07 000000629 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 02:57:50.004 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:57:50.004 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:57:50.004 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:50.014 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:57:50.014 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:57:50.014 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:50.014 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:50.014 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:50.014 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:57:50.024 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:57:50.044 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:57:50.044 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:57:50.234 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:57:50.234 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:57:50.254 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.018051,
17-03-18 02:57:50.294 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:50.294 -07 000000626 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:57:50.304 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:57:50.304 -07 000000569 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:50.304 -07 000000569 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:57:50.304 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-18 02:57:51.254 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:51.254 -07 000000467 INF: FPGA: Recv YRDPOS 129481
17-03-18 02:57:51.264 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:51.264 -07 000000569 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:51.284 -07 000000569 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:57:51.284 -07 000000569 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:57:51.284 -07 000000569 INF: Y Motor: Moved to 63.2231 after 1472 ms (table move)
17-03-18 02:57:51.294 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177052 mm (DAC = 38677)
17-03-18 02:57:51.294 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.294 -07 000000579 INF: FPGA: Recv ZSGSRD 36859
17-03-18 02:57:51.304 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:57:51.304 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.304 -07 000000430 INF: FPGA: Recv ZSGSRD 36847
17-03-18 02:57:51.314 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:51.314 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.314 -07 000000512 INF: FPGA: Recv ZSGSRD 36855
17-03-18 02:57:51.324 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:51.324 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.324 -07 000000576 INF: FPGA: Recv ZSGSRD 36846
17-03-18 02:57:51.334 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:51.334 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.334 -07 000000626 INF: FPGA: Recv ZSGSRD 36853
17-03-18 02:57:51.344 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:51.344 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.344 -07 000000461 INF: FPGA: Recv ZSGSRD 36846
17-03-18 02:57:51.354 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:51.354 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.354 -07 000000430 INF: FPGA: Recv ZSGSRD 36850
17-03-18 02:57:51.364 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:51.364 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.364 -07 000000569 INF: FPGA: Recv ZSGSRD 36851
17-03-18 02:57:51.374 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:51.374 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.374 -07 000000501 INF: FPGA: Recv ZSGSRD 36845
17-03-18 02:57:51.384 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:51.384 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:51.384 -07 000000629 INF: FPGA: Recv ZSGSRD 36850
17-03-18 02:57:51.394 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:51.394 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:51.394 -07 000000579 INF: FPGA: Recv ZPIEZORD 33042
17-03-18 02:57:51.404 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:51.404 -07 000000618 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.902 V. Piezo Error = -8.4 V.
17-03-18 02:57:51.404 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36850 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36850 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36845 (-176.1 uncal um), Max = 36859 (-176.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:57:51.404 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36850, posNoise = 9, negNoise = 5
17-03-18 02:57:51.404 -07 000000618 INF: Z Motor: After move to -0.177052, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:51.404 -07 000000618 INF: Z Motor: Settle wait time = 1475 ms, measure time = 106 ms (allowed 150 ms), total time = 1581 ms
17-03-18 02:57:51.404 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:57:51.454 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1635 ms
17-03-18 02:57:51.454 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:57:51.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:51.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:51.454 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:51.454 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:51.454 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:57:51.454 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:57:51.454 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:57:51.454 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:57:51.464 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:57:51.464 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:57:51.474 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-18 02:57:51.474 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:57:51.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:57:51.514 -07 000000629 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:57:51.524 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:57:51.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:57:51.814 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:57:51.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:57:51.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:57:51.814 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) start.
17-03-18 02:57:51.854 -07 000000626 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:57:51.854 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 02:57:51.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall
17-03-18 02:57:51.944 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) end. Duration was 125 ms.
17-03-18 02:57:51.944 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:51.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:57:51.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 02:57:52.054 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:57:52.054 -07 000000618 INF: Autofocus start
17-03-18 02:57:52.054 -07 000000618 INF: MeasureProfile start
17-03-18 02:57:52.054 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:57:52.064 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:57:52.064 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:57:52.064 -07 000000618 INF: MeasureProfile done
17-03-18 02:57:52.064 -07 000000618 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:57:52.064 -07 000000618 INF: Autofocus finished
17-03-18 02:57:52.264 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:57:52.264 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:57:52.264 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.177055569435026. ----------
17-03-18 02:57:52.274 -07 000000610 INF: Cycle	106	Tile	5	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:57:52.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37210, sync = True, waitForSettling = True)
17-03-18 02:57:52.274 -07 000000610 INF: Z Motor: Moving to -0.170336 mm, started at -0.177056 mm, distance = 6.72 um
17-03-18 02:57:52.274 -07 000000610 INF: FPGA: Xmit ZDACW 37210\n [Z Motor]
17-03-18 02:57:52.274 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:57:52.284 -07 000000610 INF: FPGA: 'ZDACW 37210' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:57:52.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:52.284 -07 000000444 INF: FPGA: Recv ZDACR 37210
17-03-18 02:57:52.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:57:52.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.444 -07 000000462 INF: FPGA: Recv ZSGSRD 35811
17-03-18 02:57:52.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:52.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.454 -07 000000590 INF: FPGA: Recv ZSGSRD 35801
17-03-18 02:57:52.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.464 -07 000000502 INF: FPGA: Recv ZSGSRD 35807
17-03-18 02:57:52.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.474 -07 000000626 INF: FPGA: Recv ZSGSRD 35809
17-03-18 02:57:52.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.484 -07 000000576 INF: FPGA: Recv ZSGSRD 35808
17-03-18 02:57:52.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.494 -07 000000455 INF: FPGA: Recv ZSGSRD 35810
17-03-18 02:57:52.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.504 -07 000000467 INF: FPGA: Recv ZSGSRD 35806
17-03-18 02:57:52.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.514 -07 000000618 INF: FPGA: Recv ZSGSRD 35811
17-03-18 02:57:52.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.524 -07 000000626 INF: FPGA: Recv ZSGSRD 35806
17-03-18 02:57:52.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:52.534 -07 000000444 INF: FPGA: Recv ZSGSRD 35805
17-03-18 02:57:52.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:52.544 -07 000000455 INF: FPGA: Recv ZPIEZORD 31606
17-03-18 02:57:52.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:52.554 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.3 V.
17-03-18 02:57:52.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35807 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35808 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35801 (-169.4 uncal um), Max = 35811 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:57:52.554 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35807, posNoise = 4, negNoise = 6
17-03-18 02:57:52.554 -07 000000610 INF: Z Motor: After move to -0.170336, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:52.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:57:52.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:52.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:52.554 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:52.554 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:57:52.554 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:57:52.554 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:57:52.554 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:57:52.554 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:52.554 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:57:52.554 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:57:52.554 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:57:52.554 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:57:52.564 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:57:52.564 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:57:52.564 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:57:52.564 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:57:52.574 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:57:52.574 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:57:52.574 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:57:52.574 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:57:52.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37386 150\n [Camera]
17-03-18 02:57:52.774 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:57:53.174 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:57:53.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:57:53.184 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:53.184 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:53.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:57:53.184 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:57:53.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:57:53.184 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:53.184 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:53.184 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:57:53.374 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37386 785
17-03-18 02:57:53.524 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:57:53.554 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:57:53.554 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:57:53.554 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:53.554 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:57:53.554 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:57:53.554 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:53.564 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:57:53.564 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:57:53.564 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:53.574 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:57:53.714 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:57:53.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:57:53.714 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:53.834 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:57:53.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:57:53.834 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:53.834 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:53.834 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:57:53.834 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:53.834 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:57:53.904 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1321
17-03-18 02:57:53.904 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:57:53.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37386 150' command took 2 ms to send, 1317 ms to get response, and 1328 ms overall
17-03-18 02:57:53.904 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170809
17-03-18 02:57:53.914 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17081 mm
17-03-18 02:57:53.914 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:57:53.914 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:57:53.914 -07 000000590 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-18 02:57:53.914 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37313, sync = True, waitForSettling = False)
17-03-18 02:57:53.914 -07 000000606 INF: Z Motor: Moving to -0.170808 mm, started at -0.170355 mm, distance = -0.45 um
17-03-18 02:57:53.914 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:53.914 -07 000000462 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:57:53.924 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:57:53.924 -07 000000590 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:53.924 -07 000000606 INF: FPGA: Xmit ZDACW 37313\n [Z Motor]
17-03-18 02:57:53.924 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:57:53.924 -07 000000590 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:57:53.924 -07 000000590 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:57:53.934 -07 000000606 INF: FPGA: 'ZDACW 37313' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:57:53.934 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:57:53.944 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:53.944 -07 000000501 INF: FPGA: Recv ZDACR 37313
17-03-18 02:57:53.954 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:57:53.954 -07 000000606 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 02:57:54.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:57:54.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:57:54.214 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:54.214 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:57:54.214 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:57:54.214 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:54.224 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:57:54.224 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:57:54.224 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-18 02:57:54.234 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:57:54.304 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 02:57:54.304 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:57:54.354 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:54.354 -07 000000430 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:57:54.364 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:57:54.364 -07 000000590 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:54.364 -07 000000590 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-18 02:57:54.364 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.180 mm/sec
17-03-18 02:57:55.314 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:55.314 -07 000000424 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:57:55.324 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:55.324 -07 000000590 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:55.344 -07 000000590 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:57:55.344 -07 000000590 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:57:55.344 -07 000000590 INF: Y Motor: Moved to 64.0562 after 1434 ms (table move)
17-03-18 02:57:55.344 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170808 mm (DAC = 37313)
17-03-18 02:57:55.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.354 -07 000000629 INF: FPGA: Recv ZSGSRD 35886
17-03-18 02:57:55.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:55.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.364 -07 000000430 INF: FPGA: Recv ZSGSRD 35877
17-03-18 02:57:55.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.374 -07 000000424 INF: FPGA: Recv ZSGSRD 35883
17-03-18 02:57:55.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.384 -07 000000626 INF: FPGA: Recv ZSGSRD 35883
17-03-18 02:57:55.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.394 -07 000000569 INF: FPGA: Recv ZSGSRD 35879
17-03-18 02:57:55.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.404 -07 000000502 INF: FPGA: Recv ZSGSRD 35874
17-03-18 02:57:55.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.414 -07 000000591 INF: FPGA: Recv ZSGSRD 35875
17-03-18 02:57:55.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.424 -07 000000467 INF: FPGA: Recv ZSGSRD 35883
17-03-18 02:57:55.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.434 -07 000000629 INF: FPGA: Recv ZSGSRD 35879
17-03-18 02:57:55.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.444 -07 000000444 INF: FPGA: Recv ZSGSRD 35881
17-03-18 02:57:55.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:55.454 -07 000000579 INF: FPGA: Recv ZPIEZORD 31780
17-03-18 02:57:55.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.464 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.694 V. Piezo Error = -9.0 V.
17-03-18 02:57:55.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35880 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35880 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35874 (-169.9 uncal um), Max = 35886 (-170.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:57:55.464 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35880, posNoise = 6, negNoise = 6
17-03-18 02:57:55.464 -07 000000610 INF: Z Motor: After move to -0.170808, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:55.464 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 111 ms (allowed 150 ms), total time = 1547 ms
17-03-18 02:57:55.464 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:57:55.504 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-18 02:57:55.504 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:57:55.504 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.170824083657518. ----------
17-03-18 02:57:55.504 -07 000000610 INF: Cycle	106	Tile	6	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:57:55.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37137, sync = True, waitForSettling = True)
17-03-18 02:57:55.504 -07 000000610 INF: Z Motor: Moving to -0.170002 mm, started at -0.170824 mm, distance = 0.82 um
17-03-18 02:57:55.504 -07 000000610 INF: FPGA: Xmit ZDACW 37137\n [Z Motor]
17-03-18 02:57:55.504 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:57:55.514 -07 000000610 INF: FPGA: 'ZDACW 37137' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:57:55.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:55.514 -07 000000502 INF: FPGA: Recv ZDACR 37137
17-03-18 02:57:55.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:57:55.614 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.979922,
17-03-18 02:57:55.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.674 -07 000000461 INF: FPGA: Recv ZSGSRD 35754
17-03-18 02:57:55.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.684 -07 000000590 INF: FPGA: Recv ZSGSRD 35755
17-03-18 02:57:55.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.694 -07 000000591 INF: FPGA: Recv ZSGSRD 35753
17-03-18 02:57:55.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.704 -07 000000424 INF: FPGA: Recv ZSGSRD 35753
17-03-18 02:57:55.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.714 -07 000000512 INF: FPGA: Recv ZSGSRD 35750
17-03-18 02:57:55.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.724 -07 000000462 INF: FPGA: Recv ZSGSRD 35757
17-03-18 02:57:55.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.734 -07 000000626 INF: FPGA: Recv ZSGSRD 35748
17-03-18 02:57:55.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.744 -07 000000444 INF: FPGA: Recv ZSGSRD 35758
17-03-18 02:57:55.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.754 -07 000000561 INF: FPGA: Recv ZSGSRD 35758
17-03-18 02:57:55.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:55.764 -07 000000455 INF: FPGA: Recv ZSGSRD 35758
17-03-18 02:57:55.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:55.774 -07 000000467 INF: FPGA: Recv ZPIEZORD 31595
17-03-18 02:57:55.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:55.784 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -9.2 V.
17-03-18 02:57:55.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35754 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35754 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35748 (-169.1 uncal um), Max = 35758 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:57:55.784 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35754, posNoise = 4, negNoise = 6
17-03-18 02:57:55.784 -07 000000610 INF: Z Motor: After move to -0.170002, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:55.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-18 02:57:55.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:55.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:55.794 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:55.794 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:55.794 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:57:55.794 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:57:55.794 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:57:55.794 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:57:55.794 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:57:55.794 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:57:55.794 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:57:55.794 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:57:55.804 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:57:55.804 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:57:55.804 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 02:57:55.804 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:57:55.814 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:57:55.814 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:57:55.814 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:57:55.814 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-18 02:57:55.824 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37313 150\n [Camera]
17-03-18 02:57:56.024 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:57:56.424 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:57:56.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:57:56.424 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:56.424 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:57:56.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:57:56.424 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:56.434 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:56.434 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:57:56.434 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:56.434 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:57:56.524 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:57:56.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:57:56.614 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37313 785
17-03-18 02:57:56.764 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:57:56.814 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:57:56.814 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:57:56.814 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:56.814 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:57:56.814 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:57:56.814 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:56.814 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:56.814 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 02:57:56.824 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:57:56.824 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:57:56.954 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:57:56.954 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:57:56.964 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:56.964 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:56.964 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:57:56.964 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:57:56.964 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:57:56.964 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:56.964 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:56.964 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:57:57.144 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:57:57.154 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:57:57.154 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37313 150' command took 2 ms to send, 1320 ms to get response, and 1327 ms overall
17-03-18 02:57:57.154 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170456
17-03-18 02:57:57.154 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17046 mm
17-03-18 02:57:57.154 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:57:57.154 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:57:57.154 -07 000000591 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-18 02:57:57.154 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:57.154 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37236, sync = True, waitForSettling = False)
17-03-18 02:57:57.154 -07 000000462 INF: Z Motor: Moving to -0.170455 mm, started at -0.170015 mm, distance = -0.44 um
17-03-18 02:57:57.154 -07 000000430 INF: FPGA: Recv YRDPOS 131187
17-03-18 02:57:57.164 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:57:57.164 -07 000000462 INF: FPGA: Xmit ZDACW 37236\n [Z Motor]
17-03-18 02:57:57.164 -07 000000591 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:57.164 -07 000000591 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:57:57.164 -07 000000591 INF: Y Motor: Moving 1338 steps-13
17-03-18 02:57:57.164 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:57:57.174 -07 000000462 INF: FPGA: 'ZDACW 37236' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:57:57.174 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:57.174 -07 000000455 INF: FPGA: Recv ZDACR 37236
17-03-18 02:57:57.184 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:57:57.184 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:57.184 -07 000000462 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 02:57:57.344 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:57:57.344 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:57:57.344 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:57.344 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:57:57.344 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:57:57.344 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:57:57.344 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:57:57.344 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:57:57.344 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:57:57.474 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-18 02:57:57.554 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 02:57:57.554 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:57:57.604 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:57.604 -07 000000444 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:57:57.614 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:57:57.614 -07 000000591 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:57.614 -07 000000591 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:57:57.614 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.107 mm/sec
17-03-18 02:57:58.564 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:57:58.564 -07 000000629 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:57:58.574 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.574 -07 000000591 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:57:58.594 -07 000000591 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:57:58.594 -07 000000591 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:57:58.594 -07 000000591 INF: Y Motor: Moved to 64.8784 after 1443 ms (table move)
17-03-18 02:57:58.604 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170455 mm (DAC = 37236)
17-03-18 02:57:58.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35819
17-03-18 02:57:58.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:57:58.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.614 -07 000000444 INF: FPGA: Recv ZSGSRD 35825
17-03-18 02:57:58.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.624 -07 000000467 INF: FPGA: Recv ZSGSRD 35821
17-03-18 02:57:58.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:57:58.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.634 -07 000000462 INF: FPGA: Recv ZSGSRD 35821
17-03-18 02:57:58.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.644 -07 000000629 INF: FPGA: Recv ZSGSRD 35831
17-03-18 02:57:58.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.654 -07 000000579 INF: FPGA: Recv ZSGSRD 35822
17-03-18 02:57:58.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.664 -07 000000590 INF: FPGA: Recv ZSGSRD 35829
17-03-18 02:57:58.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.674 -07 000000626 INF: FPGA: Recv ZSGSRD 35821
17-03-18 02:57:58.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.684 -07 000000606 INF: FPGA: Recv ZSGSRD 35817
17-03-18 02:57:58.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.694 -07 000000444 INF: FPGA: Recv ZSGSRD 35828
17-03-18 02:57:58.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:58.704 -07 000000501 INF: FPGA: Recv ZPIEZORD 31704
17-03-18 02:57:58.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.714 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.1 V.
17-03-18 02:57:58.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35823 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35822 (-169.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35817 (-169.5 uncal um), Max = 35831 (-169.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:57:58.714 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35823, posNoise = 8, negNoise = 6
17-03-18 02:57:58.714 -07 000000610 INF: Z Motor: After move to -0.170455, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:58.714 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 109 ms (allowed 150 ms), total time = 1554 ms
17-03-18 02:57:58.714 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:57:58.764 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 02:57:58.764 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:57:58.764 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.170457903565438. ----------
17-03-18 02:57:58.764 -07 000000610 INF: Cycle	106	Tile	7	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:57:58.764 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37059, sync = True, waitForSettling = True)
17-03-18 02:57:58.764 -07 000000610 INF: Z Motor: Moving to -0.169645 mm, started at -0.170458 mm, distance = 0.81 um
17-03-18 02:57:58.764 -07 000000610 INF: FPGA: Xmit ZDACW 37059\n [Z Motor]
17-03-18 02:57:58.764 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:57:58.774 -07 000000610 INF: FPGA: 'ZDACW 37059' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:57:58.774 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:57:58.774 -07 000000462 INF: FPGA: Recv ZDACR 37059
17-03-18 02:57:58.784 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.784 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:57:58.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.934 -07 000000512 INF: FPGA: Recv ZSGSRD 35692
17-03-18 02:57:58.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:57:58.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.944 -07 000000579 INF: FPGA: Recv ZSGSRD 35702
17-03-18 02:57:58.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.954 -07 000000590 INF: FPGA: Recv ZSGSRD 35703
17-03-18 02:57:58.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.964 -07 000000626 INF: FPGA: Recv ZSGSRD 35700
17-03-18 02:57:58.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.974 -07 000000569 INF: FPGA: Recv ZSGSRD 35695
17-03-18 02:57:58.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.984 -07 000000576 INF: FPGA: Recv ZSGSRD 35700
17-03-18 02:57:58.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:58.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:58.994 -07 000000444 INF: FPGA: Recv ZSGSRD 35701
17-03-18 02:57:59.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:57:59.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:59.004 -07 000000467 INF: FPGA: Recv ZSGSRD 35694
17-03-18 02:57:59.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:59.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:59.014 -07 000000424 INF: FPGA: Recv ZSGSRD 35697
17-03-18 02:57:59.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:59.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:57:59.024 -07 000000591 INF: FPGA: Recv ZSGSRD 35702
17-03-18 02:57:59.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:59.034 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:57:59.034 -07 000000462 INF: FPGA: Recv ZPIEZORD 31490
17-03-18 02:57:59.044 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:57:59.044 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -9.3 V.
17-03-18 02:57:59.044 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35699 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35700 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35692 (-168.7 uncal um), Max = 35703 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:57:59.044 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35699, posNoise = 4, negNoise = 7
17-03-18 02:57:59.044 -07 000000610 INF: Z Motor: After move to -0.169645, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:57:59.044 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:57:59.044 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:57:59.044 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:57:59.044 -07 000000467 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:57:59.044 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:57:59.044 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:57:59.044 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:57:59.044 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:57:59.044 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:57:59.044 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:57:59.044 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:57:59.044 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:57:59.044 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:57:59.054 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:57:59.054 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:57:59.054 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:57:59.054 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:57:59.064 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:57:59.064 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:57:59.064 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:57:59.064 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:57:59.064 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37236 150\n [Camera]
17-03-18 02:57:59.264 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:57:59.664 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:57:59.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:57:59.664 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:57:59.674 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:57:59.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:57:59.674 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:57:59.674 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:57:59.674 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:57:59.674 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:57:59.674 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:57:59.864 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37236 785
17-03-18 02:58:00.014 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:00.054 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:58:00.054 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:58:00.054 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:00.064 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 02:58:00.064 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:58:00.064 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:00.064 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:00.064 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:58:00.064 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:00.074 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:58:00.204 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:00.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:00.204 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:00.204 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:00.204 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 02:58:00.204 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:00.204 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:00.214 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:00.214 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:00.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 02:58:00.394 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:00.394 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:00.394 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37236 150' command took 2 ms to send, 1315 ms to get response, and 1326 ms overall
17-03-18 02:58:00.394 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170089
17-03-18 02:58:00.394 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17009 mm
17-03-18 02:58:00.404 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:00.404 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:58:00.404 -07 000000576 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-18 02:58:00.404 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:00.404 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 37156, sync = True, waitForSettling = False)
17-03-18 02:58:00.404 -07 000000455 INF: Z Motor: Moving to -0.170089 mm, started at -0.169661 mm, distance = -0.43 um
17-03-18 02:58:00.404 -07 000000629 INF: FPGA: Recv YRDPOS 132871
17-03-18 02:58:00.414 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:00.414 -07 000000576 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:00.414 -07 000000576 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:00.414 -07 000000576 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:58:00.414 -07 000000455 INF: FPGA: Xmit ZDACW 37156\n [Z Motor]
17-03-18 02:58:00.414 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 02:58:00.424 -07 000000455 INF: FPGA: 'ZDACW 37156' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:58:00.424 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:00.424 -07 000000467 INF: FPGA: Recv ZDACR 37156
17-03-18 02:58:00.434 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:00.434 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:00.434 -07 000000455 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 02:58:00.584 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:58:00.584 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:58:00.584 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:00.584 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:58:00.584 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:58:00.584 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:00.594 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:00.594 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:58:00.594 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:00.604 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:58:00.814 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 02:58:00.814 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 02:58:00.854 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:00.864 -07 000000467 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:58:00.864 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:58:00.864 -07 000000576 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:00.864 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:58:00.864 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.110 mm/sec
17-03-18 02:58:00.974 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.969015,
17-03-18 02:58:01.524 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:01.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:01.814 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:01.814 -07 000000590 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:58:01.824 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:01.824 -07 000000576 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:01.854 -07 000000576 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:01.854 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:01.854 -07 000000576 INF: Y Motor: Moved to 65.7134 after 1452 ms (table move)
17-03-18 02:58:01.854 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170089 mm (DAC = 37156)
17-03-18 02:58:01.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.864 -07 000000569 INF: FPGA: Recv ZSGSRD 35771
17-03-18 02:58:01.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:58:01.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.864 -07 000000576 INF: FPGA: Recv ZSGSRD 35771
17-03-18 02:58:01.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.874 -07 000000467 INF: FPGA: Recv ZSGSRD 35760
17-03-18 02:58:01.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.884 -07 000000444 INF: FPGA: Recv ZSGSRD 35764
17-03-18 02:58:01.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.894 -07 000000424 INF: FPGA: Recv ZSGSRD 35770
17-03-18 02:58:01.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.904 -07 000000430 INF: FPGA: Recv ZSGSRD 35772
17-03-18 02:58:01.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.914 -07 000000579 INF: FPGA: Recv ZSGSRD 35773
17-03-18 02:58:01.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.924 -07 000000467 INF: FPGA: Recv ZSGSRD 35772
17-03-18 02:58:01.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.934 -07 000000512 INF: FPGA: Recv ZSGSRD 35767
17-03-18 02:58:01.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:01.944 -07 000000462 INF: FPGA: Recv ZSGSRD 35766
17-03-18 02:58:01.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:01.954 -07 000000501 INF: FPGA: Recv ZPIEZORD 31639
17-03-18 02:58:01.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:01.964 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -9.1 V.
17-03-18 02:58:01.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35769 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35770 (-169.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35760 (-169.2 uncal um), Max = 35773 (-169.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:58:01.964 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35769, posNoise = 4, negNoise = 9
17-03-18 02:58:01.964 -07 000000610 INF: Z Motor: After move to -0.170089, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:01.964 -07 000000610 INF: Z Motor: Settle wait time = 1454 ms, measure time = 103 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:58:01.964 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:02.014 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 02:58:02.014 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:02.014 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.170110996109783. ----------
17-03-18 02:58:02.014 -07 000000610 INF: Cycle	106	Tile	8	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:02.014 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36979, sync = True, waitForSettling = True)
17-03-18 02:58:02.014 -07 000000610 INF: Z Motor: Moving to -0.169279 mm, started at -0.170111 mm, distance = 0.83 um
17-03-18 02:58:02.014 -07 000000610 INF: FPGA: Xmit ZDACW 36979\n [Z Motor]
17-03-18 02:58:02.014 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:58:02.024 -07 000000610 INF: FPGA: 'ZDACW 36979' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:58:02.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:02.024 -07 000000424 INF: FPGA: Recv ZDACR 36979
17-03-18 02:58:02.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:02.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.184 -07 000000461 INF: FPGA: Recv ZSGSRD 35634
17-03-18 02:58:02.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:02.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.194 -07 000000590 INF: FPGA: Recv ZSGSRD 35639
17-03-18 02:58:02.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.204 -07 000000501 INF: FPGA: Recv ZSGSRD 35641
17-03-18 02:58:02.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.214 -07 000000512 INF: FPGA: Recv ZSGSRD 35637
17-03-18 02:58:02.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.224 -07 000000455 INF: FPGA: Recv ZSGSRD 35646
17-03-18 02:58:02.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.234 -07 000000444 INF: FPGA: Recv ZSGSRD 35636
17-03-18 02:58:02.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.244 -07 000000462 INF: FPGA: Recv ZSGSRD 35644
17-03-18 02:58:02.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.254 -07 000000430 INF: FPGA: Recv ZSGSRD 35644
17-03-18 02:58:02.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.264 -07 000000576 INF: FPGA: Recv ZSGSRD 35638
17-03-18 02:58:02.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:02.274 -07 000000467 INF: FPGA: Recv ZSGSRD 35644
17-03-18 02:58:02.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:02.284 -07 000000461 INF: FPGA: Recv ZPIEZORD 31457
17-03-18 02:58:02.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:02.294 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.643 V. Piezo Error = -9.2 V.
17-03-18 02:58:02.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35640 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35640 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35634 (-168.4 uncal um), Max = 35646 (-168.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:58:02.294 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35640, posNoise = 6, negNoise = 6
17-03-18 02:58:02.294 -07 000000610 INF: Z Motor: After move to -0.169279, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:02.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:58:02.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:02.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:02.294 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:02.294 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:02.294 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:02.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:02.294 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:58:02.294 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:02.294 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:02.294 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:02.294 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:02.294 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:02.304 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:58:02.304 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:02.304 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:02.304 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:02.314 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:58:02.314 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:58:02.314 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:58:02.314 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:58:02.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37156 150\n [Camera]
17-03-18 02:58:02.514 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:02.924 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:02.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:02.924 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:02.924 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:02.924 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:58:02.924 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:02.924 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:02.924 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:03.044 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:03.044 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:58:03.114 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37156 785
17-03-18 02:58:03.264 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:03.304 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:58:03.304 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:58:03.304 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:03.304 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:03.304 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:58:03.414 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:58:03.414 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 02:58:03.414 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:03.414 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:03.424 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-18 02:58:03.454 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:03.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:03.454 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:03.454 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:03.454 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:58:03.454 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:03.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:03.454 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:03.454 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:03.454 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:58:03.644 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:03.644 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:03.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37156 150' command took 2 ms to send, 1317 ms to get response, and 1326 ms overall
17-03-18 02:58:03.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:58:03.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169282272743495. ------
17-03-18 02:58:03.654 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17576 mm
17-03-18 02:58:03.654 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:03.654 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:58:03.654 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:58:03.654 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:58:03.654 -07 000000502 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-18 02:58:03.654 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38396, sync = True, waitForSettling = False)
17-03-18 02:58:03.654 -07 000000467 INF: Z Motor: Moving to -0.175766 mm, started at -0.169282 mm, distance = -6.48 um
17-03-18 02:58:03.664 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:58:03.664 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:03.664 -07 000000461 INF: FPGA: Recv YRDPOS 134581
17-03-18 02:58:03.674 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:58:03.674 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:58:03.674 -07 000000502 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:03.674 -07 000000502 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:03.674 -07 000000502 INF: Y Motor: Moving 1343 steps-19
17-03-18 02:58:03.684 -07 000000467 INF: FPGA: Xmit ZDACW 38396\n [Z Motor]
17-03-18 02:58:03.684 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:58:03.694 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:03.694 -07 000000467 INF: FPGA: 'ZDACW 38396' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-18 02:58:03.704 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:03.704 -07 000000626 INF: FPGA: Recv ZDACR 38396
17-03-18 02:58:03.714 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:03.714 -07 000000467 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-18 02:58:03.834 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:58:03.834 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:58:03.834 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:03.844 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:58:03.844 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:58:03.844 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:03.844 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:03.844 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:58:03.844 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:03.854 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:58:03.874 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:58:03.874 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-18 02:58:04.064 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:58:04.064 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:58:04.114 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:04.114 -07 000000424 INF: FPGA: Recv YRDPOS 136270
17-03-18 02:58:04.124 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:58:04.124 -07 000000502 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:04.124 -07 000000502 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:58:04.124 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 02:58:05.074 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:05.074 -07 000000461 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:58:05.084 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:05.084 -07 000000502 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:05.104 -07 000000502 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:05.104 -07 000000502 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:58:05.104 -07 000000502 INF: Y Motor: Moved to 66.5386 after 1451 ms (table move)
17-03-18 02:58:05.114 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175766 mm (DAC = 38396)
17-03-18 02:58:05.114 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.114 -07 000000424 INF: FPGA: Recv ZSGSRD 36661
17-03-18 02:58:05.124 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:58:05.124 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.124 -07 000000462 INF: FPGA: Recv ZSGSRD 36654
17-03-18 02:58:05.134 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.134 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.134 -07 000000502 INF: FPGA: Recv ZSGSRD 36647
17-03-18 02:58:05.144 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.144 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.144 -07 000000561 INF: FPGA: Recv ZSGSRD 36654
17-03-18 02:58:05.154 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.154 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.154 -07 000000455 INF: FPGA: Recv ZSGSRD 36650
17-03-18 02:58:05.164 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.164 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.164 -07 000000590 INF: FPGA: Recv ZSGSRD 36650
17-03-18 02:58:05.174 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.174 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.174 -07 000000579 INF: FPGA: Recv ZSGSRD 36650
17-03-18 02:58:05.184 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.184 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.184 -07 000000606 INF: FPGA: Recv ZSGSRD 36643
17-03-18 02:58:05.194 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.194 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.194 -07 000000462 INF: FPGA: Recv ZSGSRD 36651
17-03-18 02:58:05.204 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.204 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:05.204 -07 000000430 INF: FPGA: Recv ZSGSRD 36653
17-03-18 02:58:05.214 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.214 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:05.214 -07 000000502 INF: FPGA: Recv ZPIEZORD 32791
17-03-18 02:58:05.224 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:05.224 -07 000000591 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.5 V.
17-03-18 02:58:05.224 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36651 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36650 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36643 (-174.8 uncal um), Max = 36661 (-175.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:58:05.224 -07 000000591 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36651, posNoise = 10, negNoise = 8
17-03-18 02:58:05.224 -07 000000591 INF: Z Motor: After move to -0.175766, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:05.224 -07 000000591 INF: Z Motor: Settle wait time = 1454 ms, measure time = 107 ms (allowed 150 ms), total time = 1561 ms
17-03-18 02:58:05.224 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:05.274 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-18 02:58:05.274 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:05.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:05.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:05.274 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:05.274 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:05.274 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:58:05.274 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:05.274 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:58:05.274 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:58:05.284 -07 000000430 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:05.284 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:58:05.294 -07 000000430 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:58:05.294 -07 000000430 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:58:05.294 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:58:05.344 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:58:05.644 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:58:05.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:58:05.644 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:58:05.644 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-18 02:58:05.674 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:58:05.684 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-18 02:58:05.684 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 02:58:05.764 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:58:05.764 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:05.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:58:05.774 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:58:05.784 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:58:05.784 -07 000000590 INF: Autofocus start
17-03-18 02:58:05.784 -07 000000590 INF: MeasureProfile start
17-03-18 02:58:05.784 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:58:05.794 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:58:05.794 -07 000000467 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:58:05.794 -07 000000590 INF: MeasureProfile done
17-03-18 02:58:05.794 -07 000000590 INF: X=32  Z correction [um]=0.09220707
17-03-18 02:58:05.794 -07 000000590 INF: Autofocus finished
17-03-18 02:58:05.994 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:58:05.994 -07 000000467 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:58:05.994 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175777151218816. ----------
17-03-18 02:58:05.994 -07 000000610 INF: Cycle	106	Tile	9	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:06.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36928, sync = True, waitForSettling = True)
17-03-18 02:58:06.004 -07 000000610 INF: Z Motor: Moving to -0.169046 mm, started at -0.175777 mm, distance = 6.73 um
17-03-18 02:58:06.004 -07 000000610 INF: FPGA: Xmit ZDACW 36928\n [Z Motor]
17-03-18 02:58:06.004 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:58:06.014 -07 000000610 INF: FPGA: 'ZDACW 36928' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:06.024 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:06.024 -07 000000501 INF: FPGA: Recv ZDACR 36928
17-03-18 02:58:06.034 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:06.034 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:06.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.184 -07 000000591 INF: FPGA: Recv ZSGSRD 35605
17-03-18 02:58:06.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:06.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.194 -07 000000461 INF: FPGA: Recv ZSGSRD 35603
17-03-18 02:58:06.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.204 -07 000000467 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:58:06.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.214 -07 000000512 INF: FPGA: Recv ZSGSRD 35600
17-03-18 02:58:06.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.224 -07 000000626 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:58:06.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.234 -07 000000502 INF: FPGA: Recv ZSGSRD 35601
17-03-18 02:58:06.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.244 -07 000000561 INF: FPGA: Recv ZSGSRD 35605
17-03-18 02:58:06.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.254 -07 000000629 INF: FPGA: Recv ZSGSRD 35613
17-03-18 02:58:06.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.264 -07 000000430 INF: FPGA: Recv ZSGSRD 35598
17-03-18 02:58:06.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:06.274 -07 000000626 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:58:06.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.284 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:06.284 -07 000000591 INF: FPGA: Recv ZPIEZORD 31404
17-03-18 02:58:06.294 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:06.294 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -9.3 V.
17-03-18 02:58:06.294 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35604 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35605 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35598 (-168.1 uncal um), Max = 35613 (-168.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:58:06.294 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35604, posNoise = 9, negNoise = 6
17-03-18 02:58:06.294 -07 000000610 INF: Z Motor: After move to -0.169046, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:06.294 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-18 02:58:06.294 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:06.294 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:06.294 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:06.294 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:06.294 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:06.294 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:06.294 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:06.294 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:06.294 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:06.294 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:06.294 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:06.304 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:06.304 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:06.304 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:06.304 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:58:06.304 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:06.314 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:58:06.314 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:58:06.314 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:58:06.314 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:58:06.314 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37105 150\n [Camera]
17-03-18 02:58:06.334 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.99219,
17-03-18 02:58:06.514 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:06.524 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:06.524 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:06.914 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:06.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:06.914 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:06.914 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:06.914 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:58:06.914 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:06.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:06.914 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:06.914 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:06.924 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:58:07.114 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37105 785
17-03-18 02:58:07.254 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:07.294 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:58:07.294 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:58:07.294 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:07.294 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:58:07.294 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:58:07.294 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:07.304 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:07.304 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:07.304 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:58:07.314 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:58:07.454 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:07.454 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:07.454 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:07.454 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:07.454 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 02:58:07.454 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:07.454 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:07.454 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:07.454 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:07.454 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:58:07.644 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:07.644 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:07.644 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37105 150' command took 2 ms to send, 1323 ms to get response, and 1327 ms overall
17-03-18 02:58:07.644 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169889
17-03-18 02:58:07.644 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16989 mm
17-03-18 02:58:07.644 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:07.654 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 37112, sync = True, waitForSettling = False)
17-03-18 02:58:07.654 -07 000000626 INF: Z Motor: Moving to -0.169888 mm, started at -0.169051 mm, distance = -0.84 um
17-03-18 02:58:07.654 -07 000000626 INF: FPGA: Xmit ZDACW 37112\n [Z Motor]
17-03-18 02:58:07.654 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:58:07.654 -07 000000569 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-18 02:58:07.654 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:58:07.664 -07 000000626 INF: FPGA: 'ZDACW 37112' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:58:07.664 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:07.664 -07 000000455 INF: FPGA: Recv ZDACR 37112
17-03-18 02:58:07.674 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:07.674 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:07.674 -07 000000626 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 02:58:07.674 -07 000000444 INF: FPGA: Recv YRDPOS 136271
17-03-18 02:58:07.684 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:58:07.684 -07 000000569 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:07.684 -07 000000569 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:07.684 -07 000000569 INF: Y Motor: Moving 1350 steps-30
17-03-18 02:58:07.684 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:07.834 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:58:07.834 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:58:07.834 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:07.834 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:58:07.834 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:58:07.834 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:07.844 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:07.844 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 02:58:07.844 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:58:07.844 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:58:08.054 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:58:08.054 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 02:58:08.104 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:08.114 -07 000000444 INF: FPGA: Recv YRDPOS 137976
17-03-18 02:58:08.114 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 02:58:08.114 -07 000000569 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:08.114 -07 000000569 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-18 02:58:08.114 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.233 mm/sec
17-03-18 02:58:09.064 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:09.064 -07 000000561 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:58:09.074 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.074 -07 000000569 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:09.094 -07 000000569 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:09.094 -07 000000569 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:58:09.094 -07 000000569 INF: Y Motor: Moved to 67.3716 after 1446 ms (table move)
17-03-18 02:58:09.104 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169888 mm (DAC = 37112)
17-03-18 02:58:09.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.104 -07 000000591 INF: FPGA: Recv ZSGSRD 35734
17-03-18 02:58:09.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:58:09.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.114 -07 000000579 INF: FPGA: Recv ZSGSRD 35742
17-03-18 02:58:09.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.124 -07 000000430 INF: FPGA: Recv ZSGSRD 35740
17-03-18 02:58:09.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.134 -07 000000561 INF: FPGA: Recv ZSGSRD 35733
17-03-18 02:58:09.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35736
17-03-18 02:58:09.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.154 -07 000000591 INF: FPGA: Recv ZSGSRD 35736
17-03-18 02:58:09.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.164 -07 000000501 INF: FPGA: Recv ZSGSRD 35736
17-03-18 02:58:09.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.174 -07 000000424 INF: FPGA: Recv ZSGSRD 35736
17-03-18 02:58:09.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.184 -07 000000629 INF: FPGA: Recv ZSGSRD 35736
17-03-18 02:58:09.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.194 -07 000000455 INF: FPGA: Recv ZSGSRD 35740
17-03-18 02:58:09.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:09.204 -07 000000590 INF: FPGA: Recv ZPIEZORD 31583
17-03-18 02:58:09.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.214 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.2 V.
17-03-18 02:58:09.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35737 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35736 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35733 (-169.0 uncal um), Max = 35742 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:58:09.214 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35737, posNoise = 5, negNoise = 4
17-03-18 02:58:09.214 -07 000000610 INF: Z Motor: After move to -0.169888, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:09.214 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms
17-03-18 02:58:09.214 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:09.264 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 02:58:09.264 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:09.264 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.169905421321246. ----------
17-03-18 02:58:09.264 -07 000000610 INF: Cycle	106	Tile	10	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:09.264 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36936, sync = True, waitForSettling = True)
17-03-18 02:58:09.264 -07 000000610 INF: Z Motor: Moving to -0.169082 mm, started at -0.169905 mm, distance = 0.82 um
17-03-18 02:58:09.264 -07 000000610 INF: FPGA: Xmit ZDACW 36936\n [Z Motor]
17-03-18 02:58:09.264 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:58:09.274 -07 000000610 INF: FPGA: 'ZDACW 36936' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:58:09.274 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:09.274 -07 000000569 INF: FPGA: Recv ZDACR 36936
17-03-18 02:58:09.284 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.284 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:09.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.434 -07 000000467 INF: FPGA: Recv ZSGSRD 35609
17-03-18 02:58:09.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:09.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.444 -07 000000606 INF: FPGA: Recv ZSGSRD 35616
17-03-18 02:58:09.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.454 -07 000000590 INF: FPGA: Recv ZSGSRD 35606
17-03-18 02:58:09.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.464 -07 000000444 INF: FPGA: Recv ZSGSRD 35610
17-03-18 02:58:09.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.474 -07 000000569 INF: FPGA: Recv ZSGSRD 35609
17-03-18 02:58:09.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.484 -07 000000576 INF: FPGA: Recv ZSGSRD 35610
17-03-18 02:58:09.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.494 -07 000000626 INF: FPGA: Recv ZSGSRD 35612
17-03-18 02:58:09.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.504 -07 000000591 INF: FPGA: Recv ZSGSRD 35605
17-03-18 02:58:09.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.514 -07 000000461 INF: FPGA: Recv ZSGSRD 35612
17-03-18 02:58:09.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:09.524 -07 000000424 INF: FPGA: Recv ZSGSRD 35612
17-03-18 02:58:09.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.534 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:09.534 -07 000000561 INF: FPGA: Recv ZPIEZORD 31396
17-03-18 02:58:09.544 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:09.544 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -9.3 V.
17-03-18 02:58:09.544 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35610 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35610 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35605 (-168.2 uncal um), Max = 35616 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:58:09.544 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35610, posNoise = 6, negNoise = 5
17-03-18 02:58:09.544 -07 000000610 INF: Z Motor: After move to -0.169082, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:09.544 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:58:09.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:09.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:09.544 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:09.544 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:09.544 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:09.544 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:09.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:09.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:09.544 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:09.544 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:09.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:09.544 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:09.554 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:58:09.554 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:09.554 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:09.554 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:09.564 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:58:09.564 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:58:09.564 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 02:58:09.564 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:58:09.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37112 150\n [Camera]
17-03-18 02:58:09.764 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:10.164 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:10.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:10.164 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:10.164 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:10.164 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:58:10.174 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:10.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:10.174 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:10.174 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:10.174 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:58:10.354 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37112 785
17-03-18 02:58:10.514 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:10.544 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:58:10.544 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:58:10.544 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:10.544 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:58:10.544 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:58:10.544 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:10.544 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:10.544 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:58:10.554 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:10.554 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:58:10.704 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:10.704 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:10.704 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:10.824 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:10.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:10.824 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:10.824 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:10.824 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:58:10.834 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:10.834 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:58:10.894 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:10.894 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:10.894 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37112 150' command took 2 ms to send, 1323 ms to get response, and 1326 ms overall
17-03-18 02:58:10.894 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169382
17-03-18 02:58:10.894 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16938 mm
17-03-18 02:58:10.894 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:10.894 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:58:10.894 -07 000000467 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-18 02:58:10.894 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:10.894 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37001, sync = True, waitForSettling = False)
17-03-18 02:58:10.894 -07 000000569 INF: Z Motor: Moving to -0.169380 mm, started at -0.169090 mm, distance = -0.29 um
17-03-18 02:58:10.904 -07 000000569 INF: FPGA: Xmit ZDACW 37001\n [Z Motor]
17-03-18 02:58:10.904 -07 000000561 INF: FPGA: Recv YRDPOS 137977
17-03-18 02:58:10.904 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:58:10.904 -07 000000467 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:10.904 -07 000000467 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:10.904 -07 000000467 INF: Y Motor: Moving 1346 steps-24
17-03-18 02:58:10.904 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:58:10.914 -07 000000569 INF: FPGA: 'ZDACW 37001' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:10.914 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:10.924 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:10.924 -07 000000462 INF: FPGA: Recv ZDACR 37001
17-03-18 02:58:10.934 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:10.934 -07 000000569 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 02:58:11.204 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:58:11.204 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:58:11.204 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:11.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:58:11.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:58:11.214 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:11.214 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:11.214 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-18 02:58:11.214 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:11.224 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:58:11.284 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:58:11.284 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 02:58:11.334 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:11.334 -07 000000626 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:58:11.344 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:58:11.344 -07 000000467 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:11.344 -07 000000467 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-18 02:58:11.344 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.179 mm/sec
17-03-18 02:58:11.524 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:11.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:11.694 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.018051,
17-03-18 02:58:12.294 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:12.294 -07 000000626 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:58:12.304 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:12.304 -07 000000467 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:12.324 -07 000000467 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:12.324 -07 000000467 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:12.324 -07 000000467 INF: Y Motor: Moved to 68.2046 after 1429 ms (table move)
17-03-18 02:58:12.334 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169380 mm (DAC = 37001)
17-03-18 02:58:12.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.344 -07 000000561 INF: FPGA: Recv ZSGSRD 35651
17-03-18 02:58:12.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:12.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.354 -07 000000430 INF: FPGA: Recv ZSGSRD 35659
17-03-18 02:58:12.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.364 -07 000000424 INF: FPGA: Recv ZSGSRD 35657
17-03-18 02:58:12.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.374 -07 000000618 INF: FPGA: Recv ZSGSRD 35653
17-03-18 02:58:12.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.384 -07 000000626 INF: FPGA: Recv ZSGSRD 35648
17-03-18 02:58:12.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.394 -07 000000576 INF: FPGA: Recv ZSGSRD 35654
17-03-18 02:58:12.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.404 -07 000000430 INF: FPGA: Recv ZSGSRD 35658
17-03-18 02:58:12.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.414 -07 000000579 INF: FPGA: Recv ZSGSRD 35654
17-03-18 02:58:12.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.424 -07 000000569 INF: FPGA: Recv ZSGSRD 35663
17-03-18 02:58:12.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.434 -07 000000444 INF: FPGA: Recv ZSGSRD 35659
17-03-18 02:58:12.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:12.444 -07 000000462 INF: FPGA: Recv ZPIEZORD 31452
17-03-18 02:58:12.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.454 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.3 V.
17-03-18 02:58:12.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35656 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35656 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35648 (-168.5 uncal um), Max = 35663 (-168.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:58:12.454 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35656, posNoise = 7, negNoise = 8
17-03-18 02:58:12.454 -07 000000610 INF: Z Motor: After move to -0.169380, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:12.454 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 108 ms (allowed 150 ms), total time = 1551 ms
17-03-18 02:58:12.454 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:12.504 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 02:58:12.504 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:12.504 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.169385060137764. ----------
17-03-18 02:58:12.504 -07 000000610 INF: Cycle	106	Tile	11	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:12.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36825, sync = True, waitForSettling = True)
17-03-18 02:58:12.504 -07 000000610 INF: Z Motor: Moving to -0.168574 mm, started at -0.169385 mm, distance = 0.81 um
17-03-18 02:58:12.504 -07 000000610 INF: FPGA: Xmit ZDACW 36825\n [Z Motor]
17-03-18 02:58:12.514 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:58:12.514 -07 000000610 INF: FPGA: 'ZDACW 36825' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 02:58:12.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:12.514 -07 000000462 INF: FPGA: Recv ZDACR 36825
17-03-18 02:58:12.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:58:12.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:12.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.674 -07 000000569 INF: FPGA: Recv ZSGSRD 35541
17-03-18 02:58:12.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:12.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.684 -07 000000430 INF: FPGA: Recv ZSGSRD 35538
17-03-18 02:58:12.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.694 -07 000000590 INF: FPGA: Recv ZSGSRD 35528
17-03-18 02:58:12.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.704 -07 000000455 INF: FPGA: Recv ZSGSRD 35526
17-03-18 02:58:12.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.714 -07 000000512 INF: FPGA: Recv ZSGSRD 35531
17-03-18 02:58:12.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.724 -07 000000561 INF: FPGA: Recv ZSGSRD 35533
17-03-18 02:58:12.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.734 -07 000000444 INF: FPGA: Recv ZSGSRD 35535
17-03-18 02:58:12.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.744 -07 000000590 INF: FPGA: Recv ZSGSRD 35530
17-03-18 02:58:12.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.754 -07 000000576 INF: FPGA: Recv ZSGSRD 35536
17-03-18 02:58:12.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:12.764 -07 000000606 INF: FPGA: Recv ZSGSRD 35531
17-03-18 02:58:12.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:12.774 -07 000000618 INF: FPGA: Recv ZPIEZORD 31280
17-03-18 02:58:12.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:12.784 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.619 V. Piezo Error = -9.4 V.
17-03-18 02:58:12.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35533 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35532 (-167.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35526 (-167.7 uncal um), Max = 35541 (-167.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:58:12.784 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35533, posNoise = 8, negNoise = 7
17-03-18 02:58:12.784 -07 000000610 INF: Z Motor: After move to -0.168574, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:12.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:58:12.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:12.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:12.784 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:12.784 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:12.784 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:12.784 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:12.784 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:12.784 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:12.784 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:12.784 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:12.784 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:12.784 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:12.784 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:58:12.794 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:58:12.794 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:12.794 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:12.804 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:58:12.804 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:58:12.804 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:58:12.804 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:58:12.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 37001 150\n [Camera]
17-03-18 02:58:13.004 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:13.404 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:13.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:13.404 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:13.414 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:13.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:13.414 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:13.414 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:13.414 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 02:58:13.424 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:13.424 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 02:58:13.594 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37001 785
17-03-18 02:58:13.744 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:13.784 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:58:13.784 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:58:13.784 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:13.794 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:13.794 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:58:13.794 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 02:58:13.794 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:58:13.794 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:13.794 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:13.804 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:58:13.944 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:13.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:13.944 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:14.054 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:14.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:14.054 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:14.064 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:14.064 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:58:14.064 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:14.064 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:58:14.134 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:14.134 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:14.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 37001 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-18 02:58:14.134 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169230
17-03-18 02:58:14.134 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16923 mm
17-03-18 02:58:14.134 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:14.134 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:58:14.134 -07 000000467 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-18 02:58:14.134 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:14.134 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 36968, sync = True, waitForSettling = False)
17-03-18 02:58:14.134 -07 000000462 INF: Z Motor: Moving to -0.169229 mm, started at -0.168595 mm, distance = -0.63 um
17-03-18 02:58:14.144 -07 000000462 INF: FPGA: Xmit ZDACW 36968\n [Z Motor]
17-03-18 02:58:14.144 -07 000000590 INF: FPGA: Recv YRDPOS 139683
17-03-18 02:58:14.144 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 02:58:14.144 -07 000000467 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:14.144 -07 000000467 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:14.144 -07 000000467 INF: Y Motor: Moving 1341 steps-16
17-03-18 02:58:14.144 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:58:14.154 -07 000000462 INF: FPGA: 'ZDACW 36968' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:58:14.154 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:14.164 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:14.164 -07 000000561 INF: FPGA: Recv ZDACR 36968
17-03-18 02:58:14.174 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:14.174 -07 000000462 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 02:58:14.444 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:58:14.444 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:58:14.444 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:14.444 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:58:14.444 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:58:14.444 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:14.454 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:14.454 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:14.454 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-18 02:58:14.464 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 02:58:14.524 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:58:14.524 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 02:58:14.584 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:14.584 -07 000000455 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:58:14.594 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:14.594 -07 000000467 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:14.594 -07 000000467 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-18 02:58:14.594 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.165 mm/sec
17-03-18 02:58:15.544 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:15.544 -07 000000626 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:58:15.554 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:15.554 -07 000000467 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:15.574 -07 000000467 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:15.574 -07 000000467 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:15.574 -07 000000467 INF: Y Motor: Moved to 69.0269 after 1440 ms (table move)
17-03-18 02:58:15.584 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169229 mm (DAC = 36968)
17-03-18 02:58:15.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.584 -07 000000461 INF: FPGA: Recv ZSGSRD 35638
17-03-18 02:58:15.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:58:15.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.594 -07 000000502 INF: FPGA: Recv ZSGSRD 35636
17-03-18 02:58:15.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.604 -07 000000467 INF: FPGA: Recv ZSGSRD 35636
17-03-18 02:58:15.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.614 -07 000000629 INF: FPGA: Recv ZSGSRD 35632
17-03-18 02:58:15.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.624 -07 000000579 INF: FPGA: Recv ZSGSRD 35630
17-03-18 02:58:15.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.634 -07 000000569 INF: FPGA: Recv ZSGSRD 35632
17-03-18 02:58:15.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.644 -07 000000590 INF: FPGA: Recv ZSGSRD 35630
17-03-18 02:58:15.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.654 -07 000000626 INF: FPGA: Recv ZSGSRD 35633
17-03-18 02:58:15.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.664 -07 000000591 INF: FPGA: Recv ZSGSRD 35637
17-03-18 02:58:15.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.674 -07 000000501 INF: FPGA: Recv ZSGSRD 35638
17-03-18 02:58:15.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:15.684 -07 000000618 INF: FPGA: Recv ZPIEZORD 31428
17-03-18 02:58:15.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.694 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.641 V. Piezo Error = -9.3 V.
17-03-18 02:58:15.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35634 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35634 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35630 (-168.3 uncal um), Max = 35638 (-168.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:58:15.694 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35634, posNoise = 4, negNoise = 4
17-03-18 02:58:15.694 -07 000000610 INF: Z Motor: After move to -0.169229, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:15.694 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 109 ms (allowed 150 ms), total time = 1551 ms
17-03-18 02:58:15.694 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:15.744 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 02:58:15.744 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:15.744 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.169243727470645. ----------
17-03-18 02:58:15.744 -07 000000610 INF: Cycle	106	Tile	12	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:15.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36792, sync = True, waitForSettling = True)
17-03-18 02:58:15.744 -07 000000610 INF: Z Motor: Moving to -0.168423 mm, started at -0.169244 mm, distance = 0.82 um
17-03-18 02:58:15.744 -07 000000610 INF: FPGA: Xmit ZDACW 36792\n [Z Motor]
17-03-18 02:58:15.744 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:58:15.754 -07 000000610 INF: FPGA: 'ZDACW 36792' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:15.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:15.754 -07 000000462 INF: FPGA: Recv ZDACR 36792
17-03-18 02:58:15.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:15.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.914 -07 000000561 INF: FPGA: Recv ZSGSRD 35513
17-03-18 02:58:15.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:15.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.924 -07 000000569 INF: FPGA: Recv ZSGSRD 35511
17-03-18 02:58:15.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.934 -07 000000576 INF: FPGA: Recv ZSGSRD 35506
17-03-18 02:58:15.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.944 -07 000000579 INF: FPGA: Recv ZSGSRD 35507
17-03-18 02:58:15.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.954 -07 000000629 INF: FPGA: Recv ZSGSRD 35508
17-03-18 02:58:15.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.964 -07 000000424 INF: FPGA: Recv ZSGSRD 35506
17-03-18 02:58:15.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.974 -07 000000502 INF: FPGA: Recv ZSGSRD 35508
17-03-18 02:58:15.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.984 -07 000000569 INF: FPGA: Recv ZSGSRD 35511
17-03-18 02:58:15.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:15.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:15.994 -07 000000455 INF: FPGA: Recv ZSGSRD 35509
17-03-18 02:58:16.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:16.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:16.004 -07 000000606 INF: FPGA: Recv ZSGSRD 35505
17-03-18 02:58:16.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:16.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:16.014 -07 000000618 INF: FPGA: Recv ZPIEZORD 31276
17-03-18 02:58:16.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:16.024 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -9.3 V.
17-03-18 02:58:16.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35508 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35508 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35505 (-167.5 uncal um), Max = 35513 (-167.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:58:16.024 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35508, posNoise = 5, negNoise = 3
17-03-18 02:58:16.024 -07 000000610 INF: Z Motor: After move to -0.168423, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:16.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:58:16.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:16.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:16.024 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:16.024 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:16.024 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:16.024 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:16.024 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:16.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:16.024 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:58:16.024 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:16.024 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:16.024 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:16.024 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:16.024 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:16.024 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:16.034 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:16.044 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:58:16.044 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:58:16.044 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:58:16.044 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:58:16.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36968 150\n [Camera]
17-03-18 02:58:16.244 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:16.524 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:16.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:16.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:16.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:16.644 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:16.654 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:16.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:16.654 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:16.654 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:16.654 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 02:58:16.654 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:16.654 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 02:58:16.844 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36968 786
17-03-18 02:58:16.994 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:17.034 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:58:17.034 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:58:17.034 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:17.034 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:58:17.034 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:58:17.034 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:17.034 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:17.034 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:58:17.044 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:17.054 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.02213,
17-03-18 02:58:17.054 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:58:17.184 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:17.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:17.184 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:17.184 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:17.184 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:58:17.184 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:17.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:17.184 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:17.184 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:17.184 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:58:17.374 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:17.374 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:17.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36968 150' command took 2 ms to send, 1314 ms to get response, and 1326 ms overall
17-03-18 02:58:17.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:58:17.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168434276740783. ------
17-03-18 02:58:17.384 -07 000000444 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:58:17.384 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17476 mm
17-03-18 02:58:17.384 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:17.384 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:58:17.384 -07 000000590 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:58:17.384 -07 000000590 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-18 02:58:17.384 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 38176, sync = True, waitForSettling = False)
17-03-18 02:58:17.384 -07 000000467 INF: Z Motor: Moving to -0.174759 mm, started at -0.168434 mm, distance = -6.32 um
17-03-18 02:58:17.394 -07 000000444 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:17.394 -07 000000467 INF: FPGA: Xmit ZDACW 38176\n [Z Motor]
17-03-18 02:58:17.394 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:58:17.404 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:17.404 -07 000000467 INF: FPGA: 'ZDACW 38176' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:58:17.404 -07 000000591 INF: FPGA: Recv YRDPOS 141367
17-03-18 02:58:17.414 -07 000000444 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:58:17.414 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:58:17.414 -07 000000590 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:17.414 -07 000000590 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:17.414 -07 000000590 INF: Y Motor: Moving 1353 steps-32
17-03-18 02:58:17.424 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:17.424 -07 000000455 INF: FPGA: Recv ZDACR 38176
17-03-18 02:58:17.434 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:58:17.434 -07 000000467 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:58:17.434 -07 000000590 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:17.564 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:58:17.564 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:58:17.564 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:17.564 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:58:17.564 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:58:17.564 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:17.574 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:17.574 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:17.574 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:58:17.574 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:58:17.614 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:58:17.614 -07 000000444 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-18 02:58:17.804 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:58:17.804 -07 000000590 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 02:58:17.854 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:17.854 -07 000000561 INF: FPGA: Recv YRDPOS 143078
17-03-18 02:58:17.864 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:58:17.864 -07 000000590 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:17.864 -07 000000590 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-18 02:58:17.864 -07 000000590 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.141 mm/sec
17-03-18 02:58:18.814 -07 000000590 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:18.814 -07 000000467 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:58:18.824 -07 000000590 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:18.824 -07 000000590 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:18.844 -07 000000590 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:18.844 -07 000000590 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:58:18.844 -07 000000590 INF: Y Motor: Moved to 69.8628 after 1464 ms (table move)
17-03-18 02:58:18.854 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174759 mm (DAC = 38176)
17-03-18 02:58:18.854 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.854 -07 000000444 INF: FPGA: Recv ZSGSRD 36493
17-03-18 02:58:18.864 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:18.864 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.864 -07 000000569 INF: FPGA: Recv ZSGSRD 36496
17-03-18 02:58:18.874 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.874 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.874 -07 000000606 INF: FPGA: Recv ZSGSRD 36496
17-03-18 02:58:18.884 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.884 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.884 -07 000000618 INF: FPGA: Recv ZSGSRD 36499
17-03-18 02:58:18.894 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.894 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.894 -07 000000626 INF: FPGA: Recv ZSGSRD 36494
17-03-18 02:58:18.904 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.904 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.904 -07 000000462 INF: FPGA: Recv ZSGSRD 36492
17-03-18 02:58:18.914 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.914 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.914 -07 000000591 INF: FPGA: Recv ZSGSRD 36489
17-03-18 02:58:18.924 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.924 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.924 -07 000000430 INF: FPGA: Recv ZSGSRD 36493
17-03-18 02:58:18.934 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.934 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.934 -07 000000618 INF: FPGA: Recv ZSGSRD 36498
17-03-18 02:58:18.944 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.944 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:18.944 -07 000000502 INF: FPGA: Recv ZSGSRD 36501
17-03-18 02:58:18.954 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.954 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:18.954 -07 000000579 INF: FPGA: Recv ZPIEZORD 32584
17-03-18 02:58:18.964 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:18.964 -07 000000629 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.825 V. Piezo Error = -8.6 V.
17-03-18 02:58:18.964 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36495 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36495 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36489 (-173.9 uncal um), Max = 36501 (-173.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:58:18.964 -07 000000629 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36495, posNoise = 6, negNoise = 6
17-03-18 02:58:18.964 -07 000000629 INF: Z Motor: After move to -0.174759, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:18.964 -07 000000629 INF: Z Motor: Settle wait time = 1467 ms, measure time = 108 ms (allowed 150 ms), total time = 1575 ms
17-03-18 02:58:18.964 -07 000000629 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:19.014 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:58:19.014 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:19.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:19.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:19.014 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:19.014 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:19.014 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:58:19.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:19.014 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:19.014 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:58:19.024 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:58:19.024 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:58:19.034 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 02:58:19.034 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:58:19.034 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:58:19.084 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:58:19.384 -07 000000455 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:58:19.384 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:58:19.384 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:58:19.384 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 02:58:19.424 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:58:19.424 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-18 02:58:19.424 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 386 ms overall
17-03-18 02:58:19.514 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:58:19.514 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:19.514 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:58:19.514 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:58:19.524 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:58:19.524 -07 000000502 INF: Autofocus start
17-03-18 02:58:19.524 -07 000000502 INF: MeasureProfile start
17-03-18 02:58:19.524 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:58:19.534 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:58:19.534 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:58:19.534 -07 000000502 INF: MeasureProfile done
17-03-18 02:58:19.534 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 02:58:19.534 -07 000000502 INF: Autofocus finished
17-03-18 02:58:19.734 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:58:19.734 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:58:19.734 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174774974124701. ----------
17-03-18 02:58:19.734 -07 000000610 INF: Cycle	106	Tile	13	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:19.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36656, sync = True, waitForSettling = True)
17-03-18 02:58:19.744 -07 000000610 INF: Z Motor: Moving to -0.167800 mm, started at -0.174775 mm, distance = 6.97 um
17-03-18 02:58:19.744 -07 000000610 INF: FPGA: Xmit ZDACW 36656\n [Z Motor]
17-03-18 02:58:19.744 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:58:19.754 -07 000000610 INF: FPGA: 'ZDACW 36656' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:19.754 -07 000000618 INF: FPGA: Recv ZDACR 36656
17-03-18 02:58:19.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:19.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:19.914 -07 000000591 INF: FPGA: Recv ZSGSRD 35417
17-03-18 02:58:19.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:19.924 -07 000000569 INF: FPGA: Recv ZSGSRD 35407
17-03-18 02:58:19.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:19.934 -07 000000462 INF: FPGA: Recv ZSGSRD 35415
17-03-18 02:58:19.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:19.944 -07 000000461 INF: FPGA: Recv ZSGSRD 35412
17-03-18 02:58:19.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:19.954 -07 000000430 INF: FPGA: Recv ZSGSRD 35414
17-03-18 02:58:19.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:19.964 -07 000000576 INF: FPGA: Recv ZSGSRD 35413
17-03-18 02:58:19.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:19.974 -07 000000502 INF: FPGA: Recv ZSGSRD 35406
17-03-18 02:58:19.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:19.984 -07 000000629 INF: FPGA: Recv ZSGSRD 35414
17-03-18 02:58:19.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:19.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:19.994 -07 000000591 INF: FPGA: Recv ZSGSRD 35411
17-03-18 02:58:20.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:20.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:20.004 -07 000000501 INF: FPGA: Recv ZSGSRD 35411
17-03-18 02:58:20.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:20.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:20.014 -07 000000590 INF: FPGA: Recv ZPIEZORD 31115
17-03-18 02:58:20.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:20.024 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -9.5 V.
17-03-18 02:58:20.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35412 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35412 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35406 (-166.9 uncal um), Max = 35417 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:58:20.024 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35412, posNoise = 5, negNoise = 6
17-03-18 02:58:20.024 -07 000000610 INF: Z Motor: After move to -0.167800, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:20.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:58:20.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:20.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:20.024 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:20.024 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:20.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:20.024 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:20.024 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:20.024 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:20.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:58:20.024 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:20.024 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:20.024 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:20.034 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:20.034 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:20.034 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:58:20.034 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:20.044 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:58:20.044 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:58:20.044 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:58:20.044 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:58:20.054 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36833 150\n [Camera]
17-03-18 02:58:20.254 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:20.654 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:20.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:20.654 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:20.654 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:20.654 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:58:20.654 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:20.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:20.654 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:20.784 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:20.784 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:58:20.844 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36833 785
17-03-18 02:58:20.994 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:21.034 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:58:21.044 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:58:21.044 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:21.044 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:21.044 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:58:21.154 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:58:21.154 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:58:21.154 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:21.164 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:21.164 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-18 02:58:21.184 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:21.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:21.184 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:21.184 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:21.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:21.184 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:21.194 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:21.194 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:58:21.194 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:21.194 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:58:21.374 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:58:21.374 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:21.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36833 150' command took 2 ms to send, 1317 ms to get response, and 1326 ms overall
17-03-18 02:58:21.374 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.167743
17-03-18 02:58:21.374 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16774 mm
17-03-18 02:58:21.374 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:21.384 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 36643, sync = True, waitForSettling = False)
17-03-18 02:58:21.384 -07 000000444 INF: Z Motor: Moving to -0.167741 mm, started at -0.167818 mm, distance = 0.08 um
17-03-18 02:58:21.384 -07 000000444 INF: FPGA: Xmit ZDACW 36643\n [Z Motor]
17-03-18 02:58:21.384 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:58:21.384 -07 000000455 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-18 02:58:21.384 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:58:21.394 -07 000000444 INF: FPGA: 'ZDACW 36643' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:21.394 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:21.394 -07 000000590 INF: FPGA: Recv ZDACR 36643
17-03-18 02:58:21.404 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:21.404 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:21.404 -07 000000444 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 02:58:21.404 -07 000000590 INF: FPGA: Recv YRDPOS 143079
17-03-18 02:58:21.414 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-18 02:58:21.414 -07 000000455 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:21.414 -07 000000455 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:21.414 -07 000000455 INF: Y Motor: Moving 1344 steps-21
17-03-18 02:58:21.414 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:21.524 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:21.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:21.574 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:58:21.574 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:58:21.574 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:21.574 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:58:21.574 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:58:21.574 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:21.584 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:21.584 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:58:21.584 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-18 02:58:21.584 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:58:21.784 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:58:21.784 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 02:58:21.834 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:21.844 -07 000000591 INF: FPGA: Recv YRDPOS 144768
17-03-18 02:58:21.844 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 02:58:21.844 -07 000000455 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:21.844 -07 000000455 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:58:21.844 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.840 mm, average velocity = 2.216 mm/sec
17-03-18 02:58:22.414 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.054831,
17-03-18 02:58:22.794 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:22.794 -07 000000579 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:58:22.804 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:22.804 -07 000000455 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:22.824 -07 000000455 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:22.824 -07 000000455 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:58:22.824 -07 000000455 INF: Y Motor: Moved to 70.6880 after 1445 ms (table move)
17-03-18 02:58:22.834 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167741 mm (DAC = 36643)
17-03-18 02:58:22.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.834 -07 000000512 INF: FPGA: Recv ZSGSRD 35403
17-03-18 02:58:22.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.844 -07 000000455 INF: FPGA: Recv ZSGSRD 35404
17-03-18 02:58:22.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.854 -07 000000444 INF: FPGA: Recv ZSGSRD 35404
17-03-18 02:58:22.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.864 -07 000000579 INF: FPGA: Recv ZSGSRD 35401
17-03-18 02:58:22.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.874 -07 000000629 INF: FPGA: Recv ZSGSRD 35392
17-03-18 02:58:22.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.884 -07 000000512 INF: FPGA: Recv ZSGSRD 35400
17-03-18 02:58:22.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.894 -07 000000501 INF: FPGA: Recv ZSGSRD 35403
17-03-18 02:58:22.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.904 -07 000000569 INF: FPGA: Recv ZSGSRD 35405
17-03-18 02:58:22.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.914 -07 000000561 INF: FPGA: Recv ZSGSRD 35401
17-03-18 02:58:22.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:22.924 -07 000000430 INF: FPGA: Recv ZSGSRD 35401
17-03-18 02:58:22.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:22.934 -07 000000590 INF: FPGA: Recv ZPIEZORD 31157
17-03-18 02:58:22.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:22.944 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.591 V. Piezo Error = -9.4 V.
17-03-18 02:58:22.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35401 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35402 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35392 (-166.8 uncal um), Max = 35405 (-166.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:58:22.944 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35401, posNoise = 4, negNoise = 9
17-03-18 02:58:22.944 -07 000000610 INF: Z Motor: After move to -0.167741, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:22.944 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 109 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:58:22.944 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:22.994 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 02:58:22.994 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:22.994 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.167746886041615. ----------
17-03-18 02:58:22.994 -07 000000610 INF: Cycle	106	Tile	14	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:22.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36467, sync = True, waitForSettling = True)
17-03-18 02:58:22.994 -07 000000610 INF: Z Motor: Moving to -0.166935 mm, started at -0.167747 mm, distance = 0.81 um
17-03-18 02:58:22.994 -07 000000610 INF: FPGA: Xmit ZDACW 36467\n [Z Motor]
17-03-18 02:58:22.994 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:58:23.004 -07 000000610 INF: FPGA: 'ZDACW 36467' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:58:23.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:23.004 -07 000000606 INF: FPGA: Recv ZDACR 36467
17-03-18 02:58:23.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:23.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.164 -07 000000512 INF: FPGA: Recv ZSGSRD 35279
17-03-18 02:58:23.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:23.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.174 -07 000000462 INF: FPGA: Recv ZSGSRD 35270
17-03-18 02:58:23.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.184 -07 000000590 INF: FPGA: Recv ZSGSRD 35275
17-03-18 02:58:23.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.194 -07 000000561 INF: FPGA: Recv ZSGSRD 35279
17-03-18 02:58:23.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.204 -07 000000629 INF: FPGA: Recv ZSGSRD 35271
17-03-18 02:58:23.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.214 -07 000000618 INF: FPGA: Recv ZSGSRD 35270
17-03-18 02:58:23.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.224 -07 000000591 INF: FPGA: Recv ZSGSRD 35276
17-03-18 02:58:23.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.234 -07 000000424 INF: FPGA: Recv ZSGSRD 35274
17-03-18 02:58:23.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.244 -07 000000561 INF: FPGA: Recv ZSGSRD 35277
17-03-18 02:58:23.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:23.254 -07 000000629 INF: FPGA: Recv ZSGSRD 35273
17-03-18 02:58:23.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.264 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:23.264 -07 000000579 INF: FPGA: Recv ZPIEZORD 30982
17-03-18 02:58:23.274 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:23.274 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.5 V.
17-03-18 02:58:23.274 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35274 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35274 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35270 (-166.0 uncal um), Max = 35279 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:58:23.274 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35274, posNoise = 5, negNoise = 4
17-03-18 02:58:23.274 -07 000000610 INF: Z Motor: After move to -0.166935, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:23.274 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:58:23.274 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:23.274 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:23.274 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:23.274 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:23.274 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:23.274 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:23.274 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:23.274 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:23.274 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:23.274 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:23.274 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:23.274 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:23.284 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:23.284 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:23.284 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:23.284 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:23.284 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:58:23.284 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:58:23.294 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:58:23.294 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:58:23.294 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36643 150\n [Camera]
17-03-18 02:58:23.494 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:23.894 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:23.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:23.894 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:23.894 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:23.894 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:58:23.894 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:23.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:23.894 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:23.894 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:23.894 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:58:24.084 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36643 785
17-03-18 02:58:24.234 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:24.274 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:58:24.274 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:58:24.274 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:24.284 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:58:24.284 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:58:24.284 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:24.284 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:24.284 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:24.284 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:58:24.294 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:58:24.424 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:24.424 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:24.434 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:24.544 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:24.544 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:24.544 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:24.544 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:24.544 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:58:24.544 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:24.544 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:58:24.624 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:24.624 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:24.624 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36643 150' command took 2 ms to send, 1321 ms to get response, and 1326 ms overall
17-03-18 02:58:24.624 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167664
17-03-18 02:58:24.624 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16766 mm
17-03-18 02:58:24.624 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:24.624 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:58:24.624 -07 000000467 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-18 02:58:24.624 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:24.624 -07 000000430 INF: Z Motor: Entering MoveAbsStepped (DAC = 36626, sync = True, waitForSettling = False)
17-03-18 02:58:24.624 -07 000000430 INF: Z Motor: Moving to -0.167663 mm, started at -0.166931 mm, distance = -0.73 um
17-03-18 02:58:24.624 -07 000000512 INF: FPGA: Recv YRDPOS 144769
17-03-18 02:58:24.634 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:58:24.634 -07 000000467 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:24.634 -07 000000467 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:24.634 -07 000000467 INF: Y Motor: Moving 1351 steps-31
17-03-18 02:58:24.634 -07 000000430 INF: FPGA: Xmit ZDACW 36626\n [Z Motor]
17-03-18 02:58:24.634 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:58:24.644 -07 000000430 INF: FPGA: 'ZDACW 36626' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:58:24.644 -07 000000430 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:24.644 -07 000000455 INF: FPGA: Recv ZDACR 36626
17-03-18 02:58:24.654 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:24.654 -07 000000430 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:24.654 -07 000000430 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 02:58:24.934 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:58:24.934 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:58:24.934 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:24.934 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 02:58:24.934 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:58:24.934 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:24.934 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:24.934 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-18 02:58:24.934 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:24.944 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 02:58:25.024 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:58:25.024 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 02:58:25.074 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:25.084 -07 000000618 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:58:25.084 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:58:25.084 -07 000000467 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:25.084 -07 000000467 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 02:58:25.084 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-18 02:58:26.034 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:26.034 -07 000000590 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:58:26.044 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.044 -07 000000467 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:26.064 -07 000000467 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:26.064 -07 000000467 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:26.064 -07 000000467 INF: Y Motor: Moved to 71.5181 after 1442 ms (table move)
17-03-18 02:58:26.074 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167663 mm (DAC = 36626)
17-03-18 02:58:26.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.074 -07 000000501 INF: FPGA: Recv ZSGSRD 35385
17-03-18 02:58:26.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.084 -07 000000606 INF: FPGA: Recv ZSGSRD 35388
17-03-18 02:58:26.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.094 -07 000000569 INF: FPGA: Recv ZSGSRD 35395
17-03-18 02:58:26.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.104 -07 000000502 INF: FPGA: Recv ZSGSRD 35393
17-03-18 02:58:26.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:26.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.114 -07 000000576 INF: FPGA: Recv ZSGSRD 35378
17-03-18 02:58:26.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.124 -07 000000462 INF: FPGA: Recv ZSGSRD 35387
17-03-18 02:58:26.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.134 -07 000000590 INF: FPGA: Recv ZSGSRD 35382
17-03-18 02:58:26.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.144 -07 000000455 INF: FPGA: Recv ZSGSRD 35389
17-03-18 02:58:26.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.154 -07 000000618 INF: FPGA: Recv ZSGSRD 35384
17-03-18 02:58:26.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.164 -07 000000561 INF: FPGA: Recv ZSGSRD 35395
17-03-18 02:58:26.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:26.174 -07 000000467 INF: FPGA: Recv ZPIEZORD 31135
17-03-18 02:58:26.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.184 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -9.4 V.
17-03-18 02:58:26.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35388 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35388 (-166.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35378 (-166.7 uncal um), Max = 35395 (-166.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:58:26.184 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35388, posNoise = 7, negNoise = 10
17-03-18 02:58:26.184 -07 000000610 INF: Z Motor: After move to -0.167663, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:26.184 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 110 ms (allowed 150 ms), total time = 1553 ms
17-03-18 02:58:26.184 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:26.224 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 02:58:26.224 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:26.224 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.167663371283772. ----------
17-03-18 02:58:26.224 -07 000000610 INF: Cycle	106	Tile	15	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:26.224 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36449, sync = True, waitForSettling = True)
17-03-18 02:58:26.224 -07 000000610 INF: Z Motor: Moving to -0.166853 mm, started at -0.167663 mm, distance = 0.81 um
17-03-18 02:58:26.224 -07 000000610 INF: FPGA: Xmit ZDACW 36449\n [Z Motor]
17-03-18 02:58:26.224 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:58:26.234 -07 000000610 INF: FPGA: 'ZDACW 36449' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:26.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:26.234 -07 000000462 INF: FPGA: Recv ZDACR 36449
17-03-18 02:58:26.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:26.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.394 -07 000000590 INF: FPGA: Recv ZSGSRD 35261
17-03-18 02:58:26.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:26.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.404 -07 000000629 INF: FPGA: Recv ZSGSRD 35265
17-03-18 02:58:26.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.414 -07 000000618 INF: FPGA: Recv ZSGSRD 35256
17-03-18 02:58:26.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.424 -07 000000606 INF: FPGA: Recv ZSGSRD 35265
17-03-18 02:58:26.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.434 -07 000000467 INF: FPGA: Recv ZSGSRD 35262
17-03-18 02:58:26.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.444 -07 000000424 INF: FPGA: Recv ZSGSRD 35264
17-03-18 02:58:26.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.454 -07 000000569 INF: FPGA: Recv ZSGSRD 35262
17-03-18 02:58:26.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.464 -07 000000591 INF: FPGA: Recv ZSGSRD 35261
17-03-18 02:58:26.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.474 -07 000000430 INF: FPGA: Recv ZSGSRD 35260
17-03-18 02:58:26.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:26.484 -07 000000576 INF: FPGA: Recv ZSGSRD 35263
17-03-18 02:58:26.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:26.494 -07 000000467 INF: FPGA: Recv ZPIEZORD 30989
17-03-18 02:58:26.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:26.504 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.4 V.
17-03-18 02:58:26.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35262 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35256 (-165.9 uncal um), Max = 35265 (-166.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:58:26.504 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35262, posNoise = 3, negNoise = 6
17-03-18 02:58:26.504 -07 000000610 INF: Z Motor: After move to -0.166853, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:26.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:58:26.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:26.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:26.504 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:26.504 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:26.504 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:26.504 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:26.504 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:26.504 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:26.504 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:26.504 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:26.504 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:26.504 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:26.504 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:26.504 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:26.514 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:26.514 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:26.524 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-18 02:58:26.524 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 02:58:26.524 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:58:26.524 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:58:26.524 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:26.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36626 150\n [Camera]
17-03-18 02:58:26.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:26.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:27.134 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:27.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:27.134 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:27.134 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:27.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:27.134 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:27.134 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:27.134 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:58:27.144 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:27.144 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:58:27.324 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36626 785
17-03-18 02:58:27.474 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:27.504 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:58:27.504 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:58:27.504 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:27.514 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:27.514 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:58:27.514 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:58:27.514 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:58:27.514 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:27.514 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:27.524 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:58:27.664 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:27.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:27.664 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:27.664 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:27.664 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:58:27.664 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:27.664 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:27.664 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:27.784 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:27.784 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:58:27.794 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.045313,
17-03-18 02:58:27.854 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:27.854 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:27.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36626 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:58:27.854 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167263
17-03-18 02:58:27.864 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16726 mm
17-03-18 02:58:27.864 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:27.864 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:58:27.864 -07 000000430 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-18 02:58:27.864 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:27.864 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 36538, sync = True, waitForSettling = False)
17-03-18 02:58:27.864 -07 000000512 INF: Z Motor: Moving to -0.167260 mm, started at -0.166854 mm, distance = -0.41 um
17-03-18 02:58:27.864 -07 000000579 INF: FPGA: Recv YRDPOS 146469
17-03-18 02:58:27.874 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:58:27.874 -07 000000430 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:27.874 -07 000000430 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:27.874 -07 000000512 INF: FPGA: Xmit ZDACW 36538\n [Z Motor]
17-03-18 02:58:27.874 -07 000000430 INF: Y Motor: Moving 1351 steps-30
17-03-18 02:58:27.874 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:58:27.884 -07 000000512 INF: FPGA: 'ZDACW 36538' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:58:27.884 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:27.894 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:27.894 -07 000000561 INF: FPGA: Recv ZDACR 36538
17-03-18 02:58:27.904 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:27.904 -07 000000512 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 02:58:28.044 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:58:28.044 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:58:28.044 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:28.054 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:28.054 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:58:28.164 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:58:28.164 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:58:28.164 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:28.164 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:28.174 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-18 02:58:28.254 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:58:28.254 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:58:28.304 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:28.304 -07 000000591 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:58:28.314 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:58:28.314 -07 000000430 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:28.314 -07 000000430 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:58:28.314 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.177 mm/sec
17-03-18 02:58:29.264 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:29.264 -07 000000455 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:58:29.274 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:29.274 -07 000000430 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:29.294 -07 000000430 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:29.294 -07 000000430 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:29.294 -07 000000430 INF: Y Motor: Moved to 72.3491 after 1435 ms (table move)
17-03-18 02:58:29.304 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167260 mm (DAC = 36538)
17-03-18 02:58:29.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.304 -07 000000626 INF: FPGA: Recv ZSGSRD 35319
17-03-18 02:58:29.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:58:29.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.314 -07 000000424 INF: FPGA: Recv ZSGSRD 35325
17-03-18 02:58:29.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.324 -07 000000467 INF: FPGA: Recv ZSGSRD 35336
17-03-18 02:58:29.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.334 -07 000000579 INF: FPGA: Recv ZSGSRD 35323
17-03-18 02:58:29.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.344 -07 000000430 INF: FPGA: Recv ZSGSRD 35329
17-03-18 02:58:29.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.354 -07 000000569 INF: FPGA: Recv ZSGSRD 35320
17-03-18 02:58:29.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.364 -07 000000424 INF: FPGA: Recv ZSGSRD 35331
17-03-18 02:58:29.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.374 -07 000000502 INF: FPGA: Recv ZSGSRD 35326
17-03-18 02:58:29.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.384 -07 000000455 INF: FPGA: Recv ZSGSRD 35321
17-03-18 02:58:29.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.394 -07 000000430 INF: FPGA: Recv ZSGSRD 35338
17-03-18 02:58:29.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.404 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:29.404 -07 000000501 INF: FPGA: Recv ZPIEZORD 31101
17-03-18 02:58:29.414 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.414 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -9.3 V.
17-03-18 02:58:29.414 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35327 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35326 (-166.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35319 (-166.4 uncal um), Max = 35338 (-166.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:58:29.414 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35327, posNoise = 11, negNoise = 8
17-03-18 02:58:29.414 -07 000000610 INF: Z Motor: After move to -0.167260, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:29.414 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 109 ms (allowed 150 ms), total time = 1545 ms
17-03-18 02:58:29.414 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:29.464 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 02:58:29.464 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:29.464 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.167271494343124. ----------
17-03-18 02:58:29.464 -07 000000610 INF: Cycle	106	Tile	16	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:29.464 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36362, sync = True, waitForSettling = True)
17-03-18 02:58:29.464 -07 000000610 INF: Z Motor: Moving to -0.166455 mm, started at -0.167271 mm, distance = 0.82 um
17-03-18 02:58:29.464 -07 000000610 INF: FPGA: Xmit ZDACW 36362\n [Z Motor]
17-03-18 02:58:29.464 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:58:29.474 -07 000000610 INF: FPGA: 'ZDACW 36362' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:29.474 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:29.474 -07 000000569 INF: FPGA: Recv ZDACR 36362
17-03-18 02:58:29.484 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.484 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:29.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.634 -07 000000576 INF: FPGA: Recv ZSGSRD 35200
17-03-18 02:58:29.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:29.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.644 -07 000000467 INF: FPGA: Recv ZSGSRD 35206
17-03-18 02:58:29.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.654 -07 000000455 INF: FPGA: Recv ZSGSRD 35202
17-03-18 02:58:29.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.664 -07 000000430 INF: FPGA: Recv ZSGSRD 35198
17-03-18 02:58:29.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.674 -07 000000591 INF: FPGA: Recv ZSGSRD 35201
17-03-18 02:58:29.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.684 -07 000000512 INF: FPGA: Recv ZSGSRD 35204
17-03-18 02:58:29.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.694 -07 000000561 INF: FPGA: Recv ZSGSRD 35206
17-03-18 02:58:29.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:58:29.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.704 -07 000000502 INF: FPGA: Recv ZSGSRD 35199
17-03-18 02:58:29.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.714 -07 000000455 INF: FPGA: Recv ZSGSRD 35197
17-03-18 02:58:29.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:29.724 -07 000000444 INF: FPGA: Recv ZSGSRD 35205
17-03-18 02:58:29.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.734 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:29.734 -07 000000579 INF: FPGA: Recv ZPIEZORD 30889
17-03-18 02:58:29.744 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:29.744 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.548 V. Piezo Error = -9.5 V.
17-03-18 02:58:29.744 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35202 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35202 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35197 (-165.6 uncal um), Max = 35206 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:58:29.744 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35202, posNoise = 4, negNoise = 5
17-03-18 02:58:29.744 -07 000000610 INF: Z Motor: After move to -0.166455, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:29.744 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:58:29.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:29.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:29.744 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:29.744 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:29.744 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:29.744 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:29.744 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:29.744 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:29.744 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:29.744 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:29.744 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:29.744 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:29.754 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:58:29.754 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:29.754 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:29.754 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:29.764 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:58:29.764 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:58:29.764 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:58:29.764 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:58:29.764 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36538 150\n [Camera]
17-03-18 02:58:29.964 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:30.364 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:30.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:30.374 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:30.374 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:30.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:30.374 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:30.374 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:30.374 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:58:30.374 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:30.374 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:58:30.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36538 785
17-03-18 02:58:30.714 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:30.744 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:58:30.744 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:58:30.744 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:30.744 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:58:30.744 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:58:30.744 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:30.754 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:30.754 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:30.754 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:58:30.764 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:58:30.904 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:30.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:30.904 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:30.904 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:30.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:30.904 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:30.904 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:30.904 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:58:30.904 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:30.904 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:58:31.094 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:31.094 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:31.094 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36538 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:58:31.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 02:58:31.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166468467825404. ------
17-03-18 02:58:31.104 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:58:31.104 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17296 mm
17-03-18 02:58:31.104 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:31.104 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:58:31.104 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:58:31.104 -07 000000579 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-18 02:58:31.104 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37783, sync = True, waitForSettling = False)
17-03-18 02:58:31.104 -07 000000569 INF: Z Motor: Moving to -0.172959 mm, started at -0.166468 mm, distance = -6.49 um
17-03-18 02:58:31.114 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:58:31.114 -07 000000569 INF: FPGA: Xmit ZDACW 37783\n [Z Motor]
17-03-18 02:58:31.114 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 02:58:31.124 -07 000000569 INF: FPGA: 'ZDACW 37783' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 02:58:31.124 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:31.124 -07 000000444 INF: FPGA: Recv ZDACR 37783
17-03-18 02:58:31.134 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:58:31.134 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:31.134 -07 000000569 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 02:58:31.144 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:31.144 -07 000000502 INF: FPGA: Recv YRDPOS 148171
17-03-18 02:58:31.154 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 41 ms overall
17-03-18 02:58:31.154 -07 000000579 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:31.154 -07 000000579 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:31.154 -07 000000579 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:58:31.154 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:31.284 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:58:31.284 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 02:58:31.284 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:31.294 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:58:31.294 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:58:31.294 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:31.294 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:31.294 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:58:31.294 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:31.304 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:58:31.334 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:58:31.334 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:58:31.524 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:31.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:31.534 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 02:58:31.534 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-18 02:58:31.574 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:31.584 -07 000000424 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:58:31.594 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:31.594 -07 000000579 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:31.594 -07 000000579 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-18 02:58:31.594 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.214 mm/sec
17-03-18 02:58:32.544 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:32.544 -07 000000461 INF: FPGA: Recv YRDPOS 149863
17-03-18 02:58:32.554 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:32.554 -07 000000579 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:32.574 -07 000000579 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:32.574 -07 000000579 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:32.574 -07 000000579 INF: Y Motor: Moved to 73.1753 after 1470 ms (table move)
17-03-18 02:58:32.584 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172959 mm (DAC = 37783)
17-03-18 02:58:32.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.584 -07 000000430 INF: FPGA: Recv ZSGSRD 36221
17-03-18 02:58:32.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:58:32.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.594 -07 000000629 INF: FPGA: Recv ZSGSRD 36212
17-03-18 02:58:32.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:32.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.614 -07 000000626 INF: FPGA: Recv ZSGSRD 36212
17-03-18 02:58:32.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:32.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.624 -07 000000629 INF: FPGA: Recv ZSGSRD 36216
17-03-18 02:58:32.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:32.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.644 -07 000000626 INF: FPGA: Recv ZSGSRD 36220
17-03-18 02:58:32.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:32.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.654 -07 000000629 INF: FPGA: Recv ZSGSRD 36217
17-03-18 02:58:32.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:32.684 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.684 -07 000000626 INF: FPGA: Recv ZSGSRD 36213
17-03-18 02:58:32.694 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:58:32.704 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.704 -07 000000569 INF: FPGA: Recv ZSGSRD 36214
17-03-18 02:58:32.714 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:32.714 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.714 -07 000000626 INF: FPGA: Recv ZSGSRD 36209
17-03-18 02:58:32.724 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:32.724 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:32.724 -07 000000444 INF: FPGA: Recv ZSGSRD 36217
17-03-18 02:58:32.734 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:32.734 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:32.734 -07 000000618 INF: FPGA: Recv ZPIEZORD 32290
17-03-18 02:58:32.744 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:32.744 -07 000000606 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.765 V. Piezo Error = -8.7 V.
17-03-18 02:58:32.744 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36215 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36215 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36209 (-172.1 uncal um), Max = 36221 (-172.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:58:32.744 -07 000000606 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36215, posNoise = 6, negNoise = 6
17-03-18 02:58:32.744 -07 000000606 INF: Z Motor: After move to -0.172959, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:32.744 -07 000000606 INF: Z Motor: Settle wait time = 1473 ms, measure time = 159 ms (allowed 150 ms), total time = 1632 ms
17-03-18 02:58:32.744 -07 000000606 INF: Z Motor: Warning: Actual position measuring time = 159 ms, longer than max expected time of 150 ms
17-03-18 02:58:32.744 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1636 ms
17-03-18 02:58:32.744 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:32.744 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:32.744 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:32.744 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:32.744 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:32.744 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:58:32.744 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:32.744 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:32.744 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:58:32.754 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:32.754 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:58:32.764 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:58:32.764 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:58:32.764 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:58:32.814 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:58:33.114 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:58:33.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:58:33.114 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:58:33.114 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 02:58:33.154 -07 000000512 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:58:33.154 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.993549,
17-03-18 02:58:33.154 -07 000000590 INF: FPGA: Recv CAMSNAP
17-03-18 02:58:33.154 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall
17-03-18 02:58:33.234 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:58:33.234 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:33.244 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:58:33.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:58:33.254 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:58:33.254 -07 000000462 INF: Autofocus start
17-03-18 02:58:33.254 -07 000000462 INF: MeasureProfile start
17-03-18 02:58:33.254 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:58:33.264 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:58:33.264 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:58:33.264 -07 000000462 INF: MeasureProfile done
17-03-18 02:58:33.264 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-18 02:58:33.264 -07 000000462 INF: Autofocus finished
17-03-18 02:58:33.464 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:58:33.464 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:58:33.464 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.172976194725008. ----------
17-03-18 02:58:33.464 -07 000000610 INF: Cycle	106	Tile	17	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:33.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36280, sync = True, waitForSettling = True)
17-03-18 02:58:33.474 -07 000000610 INF: Z Motor: Moving to -0.166079 mm, started at -0.172976 mm, distance = 6.90 um
17-03-18 02:58:33.474 -07 000000610 INF: FPGA: Xmit ZDACW 36280\n [Z Motor]
17-03-18 02:58:33.474 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:58:33.484 -07 000000610 INF: FPGA: 'ZDACW 36280' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:33.484 -07 000000502 INF: FPGA: Recv ZDACR 36280
17-03-18 02:58:33.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:33.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.644 -07 000000444 INF: FPGA: Recv ZSGSRD 35145
17-03-18 02:58:33.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:33.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.654 -07 000000561 INF: FPGA: Recv ZSGSRD 35149
17-03-18 02:58:33.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.664 -07 000000629 INF: FPGA: Recv ZSGSRD 35136
17-03-18 02:58:33.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.674 -07 000000430 INF: FPGA: Recv ZSGSRD 35145
17-03-18 02:58:33.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.684 -07 000000576 INF: FPGA: Recv ZSGSRD 35143
17-03-18 02:58:33.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.694 -07 000000618 INF: FPGA: Recv ZSGSRD 35145
17-03-18 02:58:33.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.704 -07 000000424 INF: FPGA: Recv ZSGSRD 35142
17-03-18 02:58:33.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.714 -07 000000590 INF: FPGA: Recv ZSGSRD 35138
17-03-18 02:58:33.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.724 -07 000000444 INF: FPGA: Recv ZSGSRD 35144
17-03-18 02:58:33.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:33.734 -07 000000561 INF: FPGA: Recv ZSGSRD 35145
17-03-18 02:58:33.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:33.744 -07 000000606 INF: FPGA: Recv ZPIEZORD 30865
17-03-18 02:58:33.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:33.754 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.536 V. Piezo Error = -9.4 V.
17-03-18 02:58:33.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35143 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35144 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35136 (-165.2 uncal um), Max = 35149 (-165.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:58:33.754 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35143, posNoise = 6, negNoise = 7
17-03-18 02:58:33.754 -07 000000610 INF: Z Motor: After move to -0.166079, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:33.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 02:58:33.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:33.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:33.754 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:33.754 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:33.754 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:33.754 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:33.754 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:33.754 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:33.754 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:33.754 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:33.754 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:33.754 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:33.764 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:58:33.764 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:33.764 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:33.764 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:33.774 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:58:33.774 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:58:33.774 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 02:58:33.774 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:58:33.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36457 150\n [Camera]
17-03-18 02:58:33.974 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:34.374 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:34.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:34.374 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:34.374 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:34.374 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 02:58:34.374 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:34.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:34.374 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:34.374 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:34.374 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:58:34.564 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36457 785
17-03-18 02:58:34.714 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 938
17-03-18 02:58:34.754 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:58:34.754 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:58:34.754 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:34.754 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:58:34.754 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:58:34.754 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:34.754 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:34.754 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:58:34.754 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:34.764 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:58:34.904 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:34.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:34.904 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:34.914 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:34.914 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:58:34.914 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:34.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:34.914 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:34.914 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:34.914 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:58:35.094 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:35.104 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:35.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36457 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-18 02:58:35.224 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166520
17-03-18 02:58:35.224 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16652 mm
17-03-18 02:58:35.224 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:35.224 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:58:35.224 -07 000000606 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-18 02:58:35.224 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:35.224 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 36376, sync = True, waitForSettling = False)
17-03-18 02:58:35.224 -07 000000579 INF: Z Motor: Moving to -0.166519 mm, started at -0.166089 mm, distance = -0.43 um
17-03-18 02:58:35.234 -07 000000467 INF: FPGA: Recv YRDPOS 149864
17-03-18 02:58:35.234 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:58:35.234 -07 000000606 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:35.234 -07 000000579 INF: FPGA: Xmit ZDACW 36376\n [Z Motor]
17-03-18 02:58:35.234 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:58:35.234 -07 000000606 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:35.234 -07 000000606 INF: Y Motor: Moving 1355 steps-35
17-03-18 02:58:35.244 -07 000000579 INF: FPGA: 'ZDACW 36376' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:58:35.244 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:35.244 -07 000000590 INF: FPGA: Recv ZDACR 36376
17-03-18 02:58:35.254 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:35.254 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:35.254 -07 000000579 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 02:58:35.304 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-18 02:58:35.304 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:58:35.304 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:35.304 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 02:58:35.304 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:58:35.304 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:35.314 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:35.314 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:58:35.314 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 02:58:35.314 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:58:35.624 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-18 02:58:35.624 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 02:58:35.664 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:35.664 -07 000000591 INF: FPGA: Recv YRDPOS 151567
17-03-18 02:58:35.674 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:58:35.674 -07 000000606 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:35.674 -07 000000606 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:58:35.674 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.847 mm, average velocity = 2.162 mm/sec
17-03-18 02:58:36.534 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:36.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:36.624 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:36.624 -07 000000430 INF: FPGA: Recv YRDPOS 151567
17-03-18 02:58:36.634 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:36.634 -07 000000606 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:36.654 -07 000000606 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:36.654 -07 000000606 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:36.654 -07 000000606 INF: Y Motor: Moved to 74.0073 after 1425 ms (table move)
17-03-18 02:58:36.654 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166519 mm (DAC = 36376)
17-03-18 02:58:36.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.654 -07 000000462 INF: FPGA: Recv ZSGSRD 35211
17-03-18 02:58:36.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:58:36.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.664 -07 000000591 INF: FPGA: Recv ZSGSRD 35208
17-03-18 02:58:36.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.674 -07 000000424 INF: FPGA: Recv ZSGSRD 35210
17-03-18 02:58:36.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.684 -07 000000569 INF: FPGA: Recv ZSGSRD 35214
17-03-18 02:58:36.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.694 -07 000000618 INF: FPGA: Recv ZSGSRD 35213
17-03-18 02:58:36.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.704 -07 000000455 INF: FPGA: Recv ZSGSRD 35216
17-03-18 02:58:36.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.714 -07 000000467 INF: FPGA: Recv ZSGSRD 35212
17-03-18 02:58:36.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.724 -07 000000444 INF: FPGA: Recv ZSGSRD 35209
17-03-18 02:58:36.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.734 -07 000000569 INF: FPGA: Recv ZSGSRD 35209
17-03-18 02:58:36.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.744 -07 000000606 INF: FPGA: Recv ZSGSRD 35209
17-03-18 02:58:36.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.754 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:36.754 -07 000000590 INF: FPGA: Recv ZPIEZORD 30967
17-03-18 02:58:36.764 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.764 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -9.4 V.
17-03-18 02:58:36.764 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35211 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35210 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35208 (-165.6 uncal um), Max = 35216 (-165.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:58:36.764 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35211, posNoise = 5, negNoise = 3
17-03-18 02:58:36.764 -07 000000610 INF: Z Motor: After move to -0.166519, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:36.764 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-18 02:58:36.764 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:36.814 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-18 02:58:36.814 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:36.814 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.16652628573468. ----------
17-03-18 02:58:36.814 -07 000000610 INF: Cycle	106	Tile	18	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:36.814 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36199, sync = True, waitForSettling = True)
17-03-18 02:58:36.814 -07 000000610 INF: Z Motor: Moving to -0.165708 mm, started at -0.166526 mm, distance = 0.82 um
17-03-18 02:58:36.814 -07 000000610 INF: FPGA: Xmit ZDACW 36199\n [Z Motor]
17-03-18 02:58:36.814 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:58:36.824 -07 000000610 INF: FPGA: 'ZDACW 36199' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:36.824 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:36.824 -07 000000561 INF: FPGA: Recv ZDACR 36199
17-03-18 02:58:36.834 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:36.834 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:36.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.984 -07 000000467 INF: FPGA: Recv ZSGSRD 35086
17-03-18 02:58:36.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:36.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:36.994 -07 000000591 INF: FPGA: Recv ZSGSRD 35089
17-03-18 02:58:37.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:37.004 -07 000000424 INF: FPGA: Recv ZSGSRD 35085
17-03-18 02:58:37.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:37.014 -07 000000606 INF: FPGA: Recv ZSGSRD 35084
17-03-18 02:58:37.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:37.024 -07 000000444 INF: FPGA: Recv ZSGSRD 35095
17-03-18 02:58:37.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:37.034 -07 000000467 INF: FPGA: Recv ZSGSRD 35085
17-03-18 02:58:37.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:37.044 -07 000000569 INF: FPGA: Recv ZSGSRD 35085
17-03-18 02:58:37.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:37.054 -07 000000561 INF: FPGA: Recv ZSGSRD 35085
17-03-18 02:58:37.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:37.064 -07 000000461 INF: FPGA: Recv ZSGSRD 35088
17-03-18 02:58:37.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:37.074 -07 000000618 INF: FPGA: Recv ZSGSRD 35086
17-03-18 02:58:37.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:37.084 -07 000000512 INF: FPGA: Recv ZPIEZORD 30772
17-03-18 02:58:37.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:37.094 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.524 V. Piezo Error = -9.5 V.
17-03-18 02:58:37.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35087 (-164.9 uncal um), Error = 0.8 uncal um, Median = 35086 (-164.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35084 (-164.8 uncal um), Max = 35095 (-164.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:58:37.094 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35087, posNoise = 8, negNoise = 3
17-03-18 02:58:37.094 -07 000000610 INF: Z Motor: After move to -0.165708, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:37.094 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:58:37.094 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:37.094 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:37.094 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:37.094 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:37.094 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:37.094 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:37.094 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:37.094 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:37.094 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:37.094 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:37.094 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:37.094 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:37.094 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:58:37.094 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:37.104 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:37.104 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:37.114 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:58:37.114 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:58:37.114 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:58:37.114 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:58:37.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36376 150\n [Camera]
17-03-18 02:58:37.324 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 02:58:37.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 593
17-03-18 02:58:37.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 593
17-03-18 02:58:37.724 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:37.724 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 593
17-03-18 02:58:37.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 593
17-03-18 02:58:37.724 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:37.724 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:37.724 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:58:37.734 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:37.734 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:58:37.914 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36376 785
17-03-18 02:58:38.064 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:38.094 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:58:38.094 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:58:38.094 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:38.104 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:38.104 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:58:38.104 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-18 02:58:38.104 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:58:38.104 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:38.104 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:38.114 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:58:38.254 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:38.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:38.254 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:38.254 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:38.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:38.254 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:38.264 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:38.264 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 02:58:38.274 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:38.274 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 02:58:38.444 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:58:38.444 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:38.444 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36376 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:58:38.444 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.165553
17-03-18 02:58:38.454 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16555 mm
17-03-18 02:58:38.454 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:38.454 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:58:38.454 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-18 02:58:38.454 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:38.454 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 36165, sync = True, waitForSettling = False)
17-03-18 02:58:38.454 -07 000000618 INF: Z Motor: Moving to -0.165553 mm, started at -0.165730 mm, distance = 0.18 um
17-03-18 02:58:38.454 -07 000000590 INF: FPGA: Recv YRDPOS 151568
17-03-18 02:58:38.464 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:58:38.464 -07 000000618 INF: FPGA: Xmit ZDACW 36165\n [Z Motor]
17-03-18 02:58:38.464 -07 000000502 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:38.464 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:58:38.464 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:38.464 -07 000000502 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:58:38.474 -07 000000618 INF: FPGA: 'ZDACW 36165' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:58:38.474 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:38.484 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:38.484 -07 000000579 INF: FPGA: Recv ZDACR 36165
17-03-18 02:58:38.494 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:38.494 -07 000000618 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-18 02:58:38.514 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.990831,
17-03-18 02:58:38.644 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:58:38.644 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:58:38.644 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:38.654 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:58:38.654 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:58:38.654 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:38.654 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:38.654 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:38.654 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:58:38.654 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 02:58:38.844 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:58:38.844 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-18 02:58:38.874 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:38.884 -07 000000501 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:58:38.884 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:58:38.884 -07 000000502 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:38.884 -07 000000502 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-18 02:58:38.884 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-18 02:58:39.834 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:39.834 -07 000000462 INF: FPGA: Recv YRDPOS 153254
17-03-18 02:58:39.844 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:39.844 -07 000000502 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:39.854 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:39.854 -07 000000502 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:39.854 -07 000000502 INF: Y Motor: Moved to 74.8311 after 1404 ms (table move)
17-03-18 02:58:39.864 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.165553 mm (DAC = 36165)
17-03-18 02:58:39.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.864 -07 000000579 INF: FPGA: Recv ZSGSRD 35069
17-03-18 02:58:39.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:58:39.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.874 -07 000000626 INF: FPGA: Recv ZSGSRD 35061
17-03-18 02:58:39.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.884 -07 000000618 INF: FPGA: Recv ZSGSRD 35055
17-03-18 02:58:39.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.894 -07 000000512 INF: FPGA: Recv ZSGSRD 35063
17-03-18 02:58:39.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.904 -07 000000606 INF: FPGA: Recv ZSGSRD 35060
17-03-18 02:58:39.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.914 -07 000000579 INF: FPGA: Recv ZSGSRD 35065
17-03-18 02:58:39.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.924 -07 000000576 INF: FPGA: Recv ZSGSRD 35070
17-03-18 02:58:39.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.934 -07 000000467 INF: FPGA: Recv ZSGSRD 35060
17-03-18 02:58:39.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.944 -07 000000424 INF: FPGA: Recv ZSGSRD 35057
17-03-18 02:58:39.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:39.954 -07 000000561 INF: FPGA: Recv ZSGSRD 35062
17-03-18 02:58:39.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.964 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:39.964 -07 000000462 INF: FPGA: Recv ZPIEZORD 30733
17-03-18 02:58:39.974 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:39.974 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.518 V. Piezo Error = -9.5 V.
17-03-18 02:58:39.974 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35062 (-164.7 uncal um), Error = 0.8 uncal um, Median = 35062 (-164.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35055 (-164.7 uncal um), Max = 35070 (-164.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:58:39.974 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35062, posNoise = 8, negNoise = 7
17-03-18 02:58:39.974 -07 000000610 INF: Z Motor: After move to -0.165553, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:39.974 -07 000000610 INF: Z Motor: Settle wait time = 1406 ms, measure time = 109 ms (allowed 150 ms), total time = 1515 ms
17-03-18 02:58:39.974 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:40.024 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1568 ms
17-03-18 02:58:40.024 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:40.024 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.165569078125558. ----------
17-03-18 02:58:40.024 -07 000000610 INF: Cycle	106	Tile	19	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:40.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35988, sync = True, waitForSettling = True)
17-03-18 02:58:40.024 -07 000000610 INF: Z Motor: Moving to -0.164743 mm, started at -0.165569 mm, distance = 0.83 um
17-03-18 02:58:40.024 -07 000000610 INF: FPGA: Xmit ZDACW 35988\n [Z Motor]
17-03-18 02:58:40.024 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 02:58:40.034 -07 000000610 INF: FPGA: 'ZDACW 35988' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:40.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:40.034 -07 000000591 INF: FPGA: Recv ZDACR 35988
17-03-18 02:58:40.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:40.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.194 -07 000000424 INF: FPGA: Recv ZSGSRD 34934
17-03-18 02:58:40.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:40.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.204 -07 000000561 INF: FPGA: Recv ZSGSRD 34940
17-03-18 02:58:40.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.214 -07 000000590 INF: FPGA: Recv ZSGSRD 34931
17-03-18 02:58:40.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.224 -07 000000569 INF: FPGA: Recv ZSGSRD 34932
17-03-18 02:58:40.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.234 -07 000000467 INF: FPGA: Recv ZSGSRD 34939
17-03-18 02:58:40.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.244 -07 000000512 INF: FPGA: Recv ZSGSRD 34931
17-03-18 02:58:40.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.254 -07 000000626 INF: FPGA: Recv ZSGSRD 34942
17-03-18 02:58:40.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.264 -07 000000618 INF: FPGA: Recv ZSGSRD 34933
17-03-18 02:58:40.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.274 -07 000000444 INF: FPGA: Recv ZSGSRD 34932
17-03-18 02:58:40.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:40.284 -07 000000455 INF: FPGA: Recv ZSGSRD 34939
17-03-18 02:58:40.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:40.294 -07 000000430 INF: FPGA: Recv ZPIEZORD 30598
17-03-18 02:58:40.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:40.304 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.491 V. Piezo Error = -9.5 V.
17-03-18 02:58:40.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34935 (-163.9 uncal um), Error = 0.9 uncal um, Median = 34934 (-163.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34931 (-163.9 uncal um), Max = 34942 (-163.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:58:40.304 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34935, posNoise = 7, negNoise = 4
17-03-18 02:58:40.304 -07 000000610 INF: Z Motor: After move to -0.164743, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:40.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:58:40.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:40.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:40.304 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:40.304 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:40.304 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:40.304 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:40.304 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:40.304 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:40.304 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:40.304 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:40.304 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:40.304 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:40.314 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:58:40.314 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:40.314 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:40.314 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:40.324 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:58:40.324 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:58:40.324 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:58:40.324 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:58:40.324 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 36165 150\n [Camera]
17-03-18 02:58:40.524 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:40.924 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:40.924 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:40.934 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:40.934 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:40.934 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:40.934 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:40.934 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:40.934 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:58:40.934 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:40.934 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:58:41.124 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36165 785
17-03-18 02:58:41.274 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:41.314 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:58:41.314 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:58:41.314 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:41.314 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:58:41.314 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:58:41.314 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:41.324 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:41.324 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:41.324 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:58:41.324 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:58:41.464 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:41.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:41.464 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:41.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:41.584 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:41.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:41.584 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:41.584 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:41.584 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:41.584 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:58:41.584 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:41.584 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:58:41.654 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:41.654 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:41.654 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 36165 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:58:41.964 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:58:41.964 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:58:41.964 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:41.964 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:58:41.964 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:58:41.964 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:41.974 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:41.974 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:41.974 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-18 02:58:41.974 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:58:41.974 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:58:42.014 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:58:42.014 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:58:42.054 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 02:58:42.054 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 02:58:42.054 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 02:58:42.064 -07 000000591 INF: FPGA: Recv EMCUR 
17-03-18 02:58:42.064 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:58:42.064 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 02:58:42.564 -07 000000569 INF: FPGA: Recv EMIN
17-03-18 02:58:42.564 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 02:58:42.564 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 02:58:42.564 -07 000000561 INF: FPGA: Recv EMCUR 
17-03-18 02:58:42.574 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:58:42.574 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:58:42.574 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.164753203183554. ------
17-03-18 02:58:42.574 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:58:42.574 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13940 mm
17-03-18 02:58:42.574 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:42.584 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 02:58:42.584 -07 000000569 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-18 02:58:42.584 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:42.584 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:58:42.584 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 02:58:42.584 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 30452, sync = True, waitForSettling = False)
17-03-18 02:58:42.584 -07 000000590 INF: Z Motor: Moving to -0.139400 mm, started at -0.164753 mm, distance = 25.35 um
17-03-18 02:58:42.584 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:58:42.594 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:42.594 -07 000000569 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:42.594 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:58:42.604 -07 000000569 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 02:58:42.604 -07 000000569 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 02:58:42.604 -07 000000590 INF: FPGA: Xmit ZDACW 30452\n [Z Motor]
17-03-18 02:58:42.604 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 02:58:42.614 -07 000000590 INF: FPGA: 'ZDACW 30452' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 02:58:42.614 -07 000000569 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 02:58:42.624 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:42.624 -07 000000512 INF: FPGA: Recv ZDACR 30452
17-03-18 02:58:42.634 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:42.634 -07 000000590 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-18 02:58:42.794 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:58:42.794 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-18 02:58:43.874 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.969015,
17-03-18 02:58:44.234 -07 000000501 INF: FPGA: Recv YMVTO 122703 23903
17-03-18 02:58:44.234 -07 000000569 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1638 ms overall
17-03-18 02:58:44.234 -07 000000569 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 02:58:44.234 -07 000000569 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-18 02:58:44.234 -07 000000569 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1638 ms, distance = 14.918 mm, average velocity = 9.108 mm/sec
17-03-18 02:58:46.534 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:46.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:47.084 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:47.084 -07 000000461 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:58:47.094 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.094 -07 000000569 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:47.124 -07 000000569 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:47.124 -07 000000569 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 02:58:47.124 -07 000000569 INF: Y Motor: Moved to 59.9106 after 4545 ms
17-03-18 02:58:47.124 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139400 mm (DAC = 30452)
17-03-18 02:58:47.124 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.134 -07 000000462 INF: FPGA: Recv ZSGSRD 30994
17-03-18 02:58:47.134 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:58:47.134 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.134 -07 000000626 INF: FPGA: Recv ZSGSRD 30993
17-03-18 02:58:47.144 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:47.144 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.144 -07 000000467 INF: FPGA: Recv ZSGSRD 30994
17-03-18 02:58:47.154 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.154 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.154 -07 000000576 INF: FPGA: Recv ZSGSRD 30989
17-03-18 02:58:47.164 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.164 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.164 -07 000000501 INF: FPGA: Recv ZSGSRD 30989
17-03-18 02:58:47.174 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.174 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.174 -07 000000606 INF: FPGA: Recv ZSGSRD 30986
17-03-18 02:58:47.184 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.184 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.184 -07 000000626 INF: FPGA: Recv ZSGSRD 30994
17-03-18 02:58:47.194 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.194 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.194 -07 000000467 INF: FPGA: Recv ZSGSRD 30994
17-03-18 02:58:47.204 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.204 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.204 -07 000000512 INF: FPGA: Recv ZSGSRD 30989
17-03-18 02:58:47.214 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.214 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:47.214 -07 000000501 INF: FPGA: Recv ZSGSRD 30988
17-03-18 02:58:47.224 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.224 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:47.224 -07 000000606 INF: FPGA: Recv ZPIEZORD 26499
17-03-18 02:58:47.234 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:47.234 -07 000000502 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.647 V. Piezo Error = -9.9 V.
17-03-18 02:58:47.234 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30991 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30991 (-138.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30986 (-138.6 uncal um), Max = 30994 (-138.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:58:47.234 -07 000000502 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30991, posNoise = 3, negNoise = 5
17-03-18 02:58:47.234 -07 000000502 INF: Z Motor: After move to -0.139400, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:47.234 -07 000000502 INF: Z Motor: Settle wait time = 4546 ms, measure time = 102 ms (allowed 150 ms), total time = 4648 ms
17-03-18 02:58:47.234 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:47.284 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4701 ms
17-03-18 02:58:47.284 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:47.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:47.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:47.284 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:47.284 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:47.284 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:58:47.284 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:47.284 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:58:47.284 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 02:58:47.304 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-18 02:58:47.304 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:58:47.314 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:47.314 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:58:47.314 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 02:58:47.314 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-18 02:58:47.324 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:58:47.364 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:58:47.664 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:58:47.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:58:47.664 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:58:47.664 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-18 02:58:47.704 -07 000000501 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:58:47.704 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-18 02:58:47.704 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall
17-03-18 02:58:47.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 02:58:47.784 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:47.784 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:58:47.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 02:58:47.804 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:58:47.804 -07 000000430 INF: Image SNR check: start
17-03-18 02:58:47.804 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:58:47.814 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:47.814 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:58:47.824 -07 000000430 INF: Image SNR check: pass  [peak (Max-Min)=125.37]
17-03-18 02:58:47.824 -07 000000430 INF: Autofocus start
17-03-18 02:58:47.824 -07 000000430 INF: MeasureProfile start
17-03-18 02:58:47.834 -07 000000430 INF: MeasureProfile done
17-03-18 02:58:47.834 -07 000000430 INF: X=32  Z correction [um]=0.1299841
17-03-18 02:58:47.834 -07 000000430 INF: Autofocus finished
17-03-18 02:58:48.014 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:58:48.014 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:58:48.014 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139416110496449. ----------
17-03-18 02:58:48.014 -07 000000610 INF: Cycle	106	Tile	1	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:48.024 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28993, sync = True, waitForSettling = True)
17-03-18 02:58:48.024 -07 000000610 INF: Z Motor: Moving to -0.132721 mm, started at -0.139416 mm, distance = 6.69 um
17-03-18 02:58:48.024 -07 000000610 INF: FPGA: Xmit ZDACW 28993\n [Z Motor]
17-03-18 02:58:48.024 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:58:48.034 -07 000000610 INF: FPGA: 'ZDACW 28993' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:48.034 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:48.034 -07 000000462 INF: FPGA: Recv ZDACR 28993
17-03-18 02:58:48.044 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.044 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:48.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.194 -07 000000590 INF: FPGA: Recv ZSGSRD 29946
17-03-18 02:58:48.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:48.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.204 -07 000000461 INF: FPGA: Recv ZSGSRD 29950
17-03-18 02:58:48.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.214 -07 000000618 INF: FPGA: Recv ZSGSRD 29946
17-03-18 02:58:48.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.224 -07 000000629 INF: FPGA: Recv ZSGSRD 29946
17-03-18 02:58:48.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.234 -07 000000569 INF: FPGA: Recv ZSGSRD 29952
17-03-18 02:58:48.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.244 -07 000000512 INF: FPGA: Recv ZSGSRD 29945
17-03-18 02:58:48.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.254 -07 000000455 INF: FPGA: Recv ZSGSRD 29948
17-03-18 02:58:48.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.264 -07 000000467 INF: FPGA: Recv ZSGSRD 29950
17-03-18 02:58:48.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.274 -07 000000561 INF: FPGA: Recv ZSGSRD 29947
17-03-18 02:58:48.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:48.284 -07 000000462 INF: FPGA: Recv ZSGSRD 29951
17-03-18 02:58:48.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.294 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:48.294 -07 000000512 INF: FPGA: Recv ZPIEZORD 25326
17-03-18 02:58:48.304 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:48.304 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.424 V. Piezo Error = -10.1 V.
17-03-18 02:58:48.304 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29948 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29948 (-131.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29945 (-131.9 uncal um), Max = 29952 (-132.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 02:58:48.304 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29948, posNoise = 4, negNoise = 3
17-03-18 02:58:48.304 -07 000000610 INF: Z Motor: After move to -0.132721, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:48.304 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 02:58:48.304 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:48.304 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:48.304 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:48.304 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:48.304 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:48.304 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:48.304 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:48.304 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:48.304 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:48.304 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:48.304 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:48.304 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 02:58:48.314 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:58:48.314 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:48.324 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:58:48.324 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:58:48.324 -07 000000629 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 02:58:48.324 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:48.334 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:58:48.334 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:48.344 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:58:48.344 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 35 ms.
17-03-18 02:58:48.344 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 29169 150\n [Camera]
17-03-18 02:58:48.544 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:48.944 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:48.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:48.944 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:48.944 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:48.944 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:48.944 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) start.
17-03-18 02:58:48.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:48.954 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:48.954 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:48.954 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:58:49.134 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29169 785
17-03-18 02:58:49.234 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.983999,
17-03-18 02:58:49.284 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:49.334 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 02:58:49.334 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:58:49.334 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:49.344 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-18 02:58:49.344 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:58:49.344 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:49.344 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:49.344 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:58:49.344 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:49.354 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:58:49.474 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:49.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:49.474 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:49.594 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:49.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:49.594 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:49.604 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:49.604 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:49.604 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:58:49.604 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:58:49.664 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:58:49.674 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:49.674 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 29169 150' command took 2 ms to send, 1320 ms to get response, and 1326 ms overall
17-03-18 02:58:49.674 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133194
17-03-18 02:58:49.674 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13319 mm
17-03-18 02:58:49.674 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:49.674 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 02:58:49.674 -07 000000467 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 02:58:49.674 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29096, sync = True, waitForSettling = False)
17-03-18 02:58:49.674 -07 000000444 INF: Z Motor: Moving to -0.133193 mm, started at -0.132716 mm, distance = -0.48 um
17-03-18 02:58:49.674 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:49.674 -07 000000591 INF: FPGA: Recv YRDPOS 122697
17-03-18 02:58:49.684 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:49.684 -07 000000467 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:49.684 -07 000000467 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:49.684 -07 000000467 INF: Y Motor: Moving 1331 steps2
17-03-18 02:58:49.684 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:49.694 -07 000000444 INF: FPGA: Xmit ZDACW 29096\n [Z Motor]
17-03-18 02:58:49.694 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:58:49.704 -07 000000444 INF: FPGA: 'ZDACW 29096' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:58:49.704 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:49.704 -07 000000576 INF: FPGA: Recv ZDACR 29096
17-03-18 02:58:49.714 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:49.714 -07 000000444 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-18 02:58:50.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 02:58:50.004 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 404 ms.
17-03-18 02:58:50.004 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:58:50.004 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:50.004 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-18 02:58:50.004 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:50.014 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:50.014 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-18 02:58:50.014 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:50.014 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 422 ms.
17-03-18 02:58:50.054 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:58:50.054 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 02:58:50.094 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:50.094 -07 000000606 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:58:50.104 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:50.104 -07 000000467 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:50.104 -07 000000467 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 02:58:50.104 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.832 mm, average velocity = 2.201 mm/sec
17-03-18 02:58:51.054 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:51.054 -07 000000561 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:58:51.064 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:51.064 -07 000000467 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:51.094 -07 000000467 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:51.094 -07 000000467 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:51.094 -07 000000467 INF: Y Motor: Moved to 60.7329 after 1415 ms (table move)
17-03-18 02:58:51.094 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133193 mm (DAC = 29096)
17-03-18 02:58:51.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.094 -07 000000569 INF: FPGA: Recv ZSGSRD 30024
17-03-18 02:58:51.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:58:51.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.104 -07 000000591 INF: FPGA: Recv ZSGSRD 30024
17-03-18 02:58:51.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.114 -07 000000629 INF: FPGA: Recv ZSGSRD 30029
17-03-18 02:58:51.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.124 -07 000000455 INF: FPGA: Recv ZSGSRD 30030
17-03-18 02:58:51.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.134 -07 000000590 INF: FPGA: Recv ZSGSRD 30026
17-03-18 02:58:51.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.144 -07 000000579 INF: FPGA: Recv ZSGSRD 30020
17-03-18 02:58:51.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.154 -07 000000561 INF: FPGA: Recv ZSGSRD 30012
17-03-18 02:58:51.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.164 -07 000000618 INF: FPGA: Recv ZSGSRD 30018
17-03-18 02:58:51.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.174 -07 000000462 INF: FPGA: Recv ZSGSRD 30022
17-03-18 02:58:51.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.184 -07 000000424 INF: FPGA: Recv ZSGSRD 30023
17-03-18 02:58:51.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.194 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:51.194 -07 000000606 INF: FPGA: Recv ZPIEZORD 25516
17-03-18 02:58:51.204 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.204 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.9 V.
17-03-18 02:58:51.204 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30023 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30024 (-132.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30012 (-132.3 uncal um), Max = 30030 (-132.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 02:58:51.204 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30023, posNoise = 7, negNoise = 11
17-03-18 02:58:51.204 -07 000000610 INF: Z Motor: After move to -0.133193, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:51.204 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 108 ms (allowed 150 ms), total time = 1525 ms
17-03-18 02:58:51.204 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:51.254 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-18 02:58:51.254 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:51.254 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.133197473143224. ----------
17-03-18 02:58:51.254 -07 000000610 INF: Cycle	106	Tile	2	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:51.254 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28920, sync = True, waitForSettling = True)
17-03-18 02:58:51.254 -07 000000610 INF: Z Motor: Moving to -0.132387 mm, started at -0.133197 mm, distance = 0.81 um
17-03-18 02:58:51.254 -07 000000610 INF: FPGA: Xmit ZDACW 28920\n [Z Motor]
17-03-18 02:58:51.254 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:58:51.264 -07 000000610 INF: FPGA: 'ZDACW 28920' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:58:51.264 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:51.264 -07 000000629 INF: FPGA: Recv ZDACR 28920
17-03-18 02:58:51.274 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.274 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:51.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.424 -07 000000579 INF: FPGA: Recv ZSGSRD 29900
17-03-18 02:58:51.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:51.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.434 -07 000000424 INF: FPGA: Recv ZSGSRD 29900
17-03-18 02:58:51.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.444 -07 000000606 INF: FPGA: Recv ZSGSRD 29896
17-03-18 02:58:51.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.454 -07 000000430 INF: FPGA: Recv ZSGSRD 29897
17-03-18 02:58:51.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.464 -07 000000455 INF: FPGA: Recv ZSGSRD 29898
17-03-18 02:58:51.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.474 -07 000000444 INF: FPGA: Recv ZSGSRD 29886
17-03-18 02:58:51.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.484 -07 000000576 INF: FPGA: Recv ZSGSRD 29902
17-03-18 02:58:51.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.494 -07 000000591 INF: FPGA: Recv ZSGSRD 29897
17-03-18 02:58:51.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.504 -07 000000461 INF: FPGA: Recv ZSGSRD 29903
17-03-18 02:58:51.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:51.514 -07 000000569 INF: FPGA: Recv ZSGSRD 29900
17-03-18 02:58:51.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.524 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:51.524 -07 000000579 INF: FPGA: Recv ZPIEZORD 25305
17-03-18 02:58:51.534 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:51.534 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -10.1 V.
17-03-18 02:58:51.534 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29898 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29899 (-131.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29886 (-131.5 uncal um), Max = 29903 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-18 02:58:51.534 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29898, posNoise = 5, negNoise = 12
17-03-18 02:58:51.534 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:51.534 -07 000000610 INF: Z Motor: After move to -0.132387, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:51.534 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:58:51.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:51.534 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:51.534 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:51.534 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:51.534 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:51.534 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:51.534 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:51.534 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:51.534 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:51.534 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:51.534 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:51.534 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:51.534 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:51.544 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:51.544 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:51.544 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:51.544 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:51.554 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:58:51.554 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:58:51.554 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:58:51.554 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:58:51.564 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 29096 150\n [Camera]
17-03-18 02:58:51.764 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:52.154 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:52.164 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:52.164 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:52.164 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:52.164 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1127973080, 0x0, 391868352) start.
17-03-18 02:58:52.164 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:52.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:52.164 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:52.164 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:52.164 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1163395344, 0x0, 418435064) start.
17-03-18 02:58:52.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29096 785
17-03-18 02:58:52.504 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:52.564 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1127973080, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:58:52.564 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-18 02:58:52.564 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:52.564 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1163395344, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:58:52.564 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:58:52.564 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:52.564 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:52.564 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 02:58:52.564 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:52.574 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 02:58:52.694 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:52.694 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:52.694 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:52.694 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:52.694 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:58:52.694 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:52.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:52.694 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:52.814 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:52.814 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:58:52.884 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:58:52.884 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:52.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 29096 150' command took 2 ms to send, 1317 ms to get response, and 1327 ms overall
17-03-18 02:58:52.884 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133104
17-03-18 02:58:52.884 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13310 mm
17-03-18 02:58:52.884 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:52.894 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29076, sync = True, waitForSettling = False)
17-03-18 02:58:52.894 -07 000000444 INF: Z Motor: Moving to -0.133101 mm, started at -0.132394 mm, distance = -0.71 um
17-03-18 02:58:52.894 -07 000000444 INF: FPGA: Xmit ZDACW 29076\n [Z Motor]
17-03-18 02:58:52.894 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 02:58:52.894 -07 000000579 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 02:58:52.894 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:58:52.904 -07 000000444 INF: FPGA: 'ZDACW 29076' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:52.904 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:52.904 -07 000000461 INF: FPGA: Recv YRDPOS 124381
17-03-18 02:58:52.914 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:58:52.914 -07 000000579 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:52.914 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:52.914 -07 000000579 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:52.914 -07 000000579 INF: Y Motor: Moving 1344 steps-20
17-03-18 02:58:52.914 -07 000000455 INF: FPGA: Recv ZDACR 29076
17-03-18 02:58:52.924 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:52.924 -07 000000444 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 02:58:52.924 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:53.094 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 02:58:53.094 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 02:58:53.094 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:53.094 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:53.094 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 02:58:53.204 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:58:53.204 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:58:53.204 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:53.204 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 02:58:53.214 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-18 02:58:53.294 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:58:53.294 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:58:53.344 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:53.344 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:58:53.354 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:58:53.354 -07 000000579 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:53.354 -07 000000579 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:58:53.354 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-18 02:58:54.304 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:54.304 -07 000000569 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:58:54.314 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:54.314 -07 000000579 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:54.334 -07 000000579 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:54.344 -07 000000579 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:54.344 -07 000000579 INF: Y Motor: Moved to 61.5640 after 1446 ms (table move)
17-03-18 02:58:54.344 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133101 mm (DAC = 29076)
17-03-18 02:58:54.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.344 -07 000000629 INF: FPGA: Recv ZSGSRD 30009
17-03-18 02:58:54.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:54.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.354 -07 000000591 INF: FPGA: Recv ZSGSRD 30010
17-03-18 02:58:54.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.364 -07 000000606 INF: FPGA: Recv ZSGSRD 30010
17-03-18 02:58:54.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.374 -07 000000467 INF: FPGA: Recv ZSGSRD 30012
17-03-18 02:58:54.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.384 -07 000000502 INF: FPGA: Recv ZSGSRD 30014
17-03-18 02:58:54.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.394 -07 000000462 INF: FPGA: Recv ZSGSRD 30005
17-03-18 02:58:54.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.404 -07 000000591 INF: FPGA: Recv ZSGSRD 30010
17-03-18 02:58:54.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.414 -07 000000430 INF: FPGA: Recv ZSGSRD 30005
17-03-18 02:58:54.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.424 -07 000000579 INF: FPGA: Recv ZSGSRD 30005
17-03-18 02:58:54.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.434 -07 000000501 INF: FPGA: Recv ZSGSRD 30010
17-03-18 02:58:54.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:54.444 -07 000000455 INF: FPGA: Recv ZPIEZORD 25486
17-03-18 02:58:54.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.454 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -9.9 V.
17-03-18 02:58:54.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30009 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30010 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30005 (-132.3 uncal um), Max = 30014 (-132.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:58:54.454 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30009, posNoise = 5, negNoise = 4
17-03-18 02:58:54.454 -07 000000610 INF: Z Motor: After move to -0.133101, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:54.454 -07 000000610 INF: Z Motor: Settle wait time = 1449 ms, measure time = 109 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:58:54.454 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:54.504 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 02:58:54.504 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:54.504 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.13310753417324. ----------
17-03-18 02:58:54.504 -07 000000610 INF: Cycle	106	Tile	3	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:54.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28900, sync = True, waitForSettling = True)
17-03-18 02:58:54.504 -07 000000610 INF: Z Motor: Moving to -0.132296 mm, started at -0.133108 mm, distance = 0.81 um
17-03-18 02:58:54.504 -07 000000610 INF: FPGA: Xmit ZDACW 28900\n [Z Motor]
17-03-18 02:58:54.504 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:58:54.514 -07 000000610 INF: FPGA: 'ZDACW 28900' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:54.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:54.514 -07 000000462 INF: FPGA: Recv ZDACR 28900
17-03-18 02:58:54.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:54.594 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.003063,
17-03-18 02:58:54.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.674 -07 000000430 INF: FPGA: Recv ZSGSRD 29884
17-03-18 02:58:54.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.684 -07 000000618 INF: FPGA: Recv ZSGSRD 29890
17-03-18 02:58:54.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.694 -07 000000512 INF: FPGA: Recv ZSGSRD 29890
17-03-18 02:58:54.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.704 -07 000000579 INF: FPGA: Recv ZSGSRD 29879
17-03-18 02:58:54.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.714 -07 000000501 INF: FPGA: Recv ZSGSRD 29884
17-03-18 02:58:54.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.724 -07 000000430 INF: FPGA: Recv ZSGSRD 29875
17-03-18 02:58:54.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.734 -07 000000618 INF: FPGA: Recv ZSGSRD 29883
17-03-18 02:58:54.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.744 -07 000000561 INF: FPGA: Recv ZSGSRD 29888
17-03-18 02:58:54.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.754 -07 000000579 INF: FPGA: Recv ZSGSRD 29888
17-03-18 02:58:54.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:54.764 -07 000000561 INF: FPGA: Recv ZSGSRD 29888
17-03-18 02:58:54.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:54.774 -07 000000461 INF: FPGA: Recv ZPIEZORD 25341
17-03-18 02:58:54.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:54.784 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -10.0 V.
17-03-18 02:58:54.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29885 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29886 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29875 (-131.5 uncal um), Max = 29890 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 02:58:54.784 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29885, posNoise = 5, negNoise = 10
17-03-18 02:58:54.784 -07 000000610 INF: Z Motor: After move to -0.132296, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:54.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:58:54.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:54.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:54.784 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:54.784 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:54.784 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:54.784 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:54.784 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:54.784 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:54.784 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:54.784 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:54.784 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:54.784 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:54.794 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:54.794 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 02:58:54.794 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:54.794 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:54.804 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:58:54.804 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:58:54.804 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:58:54.804 -07 000000444 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:58:54.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 29076 150\n [Camera]
17-03-18 02:58:55.014 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:55.404 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:55.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:55.414 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:55.414 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:55.414 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:58:55.414 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:55.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:55.414 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:55.414 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:55.414 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 02:58:55.604 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29076 785
17-03-18 02:58:55.754 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:55.794 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:58:55.794 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:58:55.794 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:55.794 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:58:55.794 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:58:55.794 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:55.794 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:55.794 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:58:55.804 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:55.804 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:58:55.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:55.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:55.944 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:55.944 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:55.944 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:58:55.944 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:55.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:55.954 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:55.954 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:55.954 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:58:56.134 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:58:56.134 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:56.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 29076 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:58:56.134 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132697
17-03-18 02:58:56.134 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13270 mm
17-03-18 02:58:56.134 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:56.144 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 28988, sync = True, waitForSettling = False)
17-03-18 02:58:56.144 -07 000000579 INF: Z Motor: Moving to -0.132699 mm, started at -0.132311 mm, distance = -0.39 um
17-03-18 02:58:56.144 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 02:58:56.144 -07 000000467 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 02:58:56.144 -07 000000579 INF: FPGA: Xmit ZDACW 28988\n [Z Motor]
17-03-18 02:58:56.144 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:58:56.154 -07 000000579 INF: FPGA: 'ZDACW 28988' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:58:56.154 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:56.154 -07 000000606 INF: FPGA: Recv YRDPOS 126083
17-03-18 02:58:56.164 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:56.164 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:58:56.164 -07 000000467 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:56.164 -07 000000467 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:56.164 -07 000000467 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:58:56.164 -07 000000590 INF: FPGA: Recv ZDACR 28988
17-03-18 02:58:56.174 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:58:56.174 -07 000000579 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 02:58:56.174 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:56.324 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 02:58:56.324 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:58:56.324 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:56.324 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:58:56.324 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:58:56.324 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:56.334 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:58:56.334 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:58:56.334 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 02:58:56.344 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:58:56.534 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:58:56.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:58:56.554 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:58:56.554 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 388 ms overall
17-03-18 02:58:56.594 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:56.594 -07 000000590 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:58:56.604 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:58:56.604 -07 000000467 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:56.604 -07 000000467 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:58:56.604 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.839 mm, average velocity = 2.156 mm/sec
17-03-18 02:58:57.554 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:57.554 -07 000000626 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:58:57.564 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:58:57.564 -07 000000467 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:57.584 -07 000000467 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:58:57.584 -07 000000467 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:58:57.584 -07 000000467 INF: Y Motor: Moved to 62.3955 after 1444 ms (table move)
17-03-18 02:58:57.594 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132699 mm (DAC = 28988)
17-03-18 02:58:57.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.594 -07 000000561 INF: FPGA: Recv ZSGSRD 29947
17-03-18 02:58:57.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.604 -07 000000591 INF: FPGA: Recv ZSGSRD 29951
17-03-18 02:58:57.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.614 -07 000000461 INF: FPGA: Recv ZSGSRD 29951
17-03-18 02:58:57.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.624 -07 000000626 INF: FPGA: Recv ZSGSRD 29942
17-03-18 02:58:57.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.634 -07 000000606 INF: FPGA: Recv ZSGSRD 29942
17-03-18 02:58:57.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.644 -07 000000424 INF: FPGA: Recv ZSGSRD 29945
17-03-18 02:58:57.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.654 -07 000000618 INF: FPGA: Recv ZSGSRD 29950
17-03-18 02:58:57.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:58:57.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.664 -07 000000502 INF: FPGA: Recv ZSGSRD 29941
17-03-18 02:58:57.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.674 -07 000000629 INF: FPGA: Recv ZSGSRD 29950
17-03-18 02:58:57.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.684 -07 000000606 INF: FPGA: Recv ZSGSRD 29955
17-03-18 02:58:57.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.694 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:57.694 -07 000000576 INF: FPGA: Recv ZPIEZORD 25476
17-03-18 02:58:57.704 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.704 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -9.8 V.
17-03-18 02:58:57.704 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29947 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29948 (-131.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29941 (-131.9 uncal um), Max = 29955 (-132.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:58:57.704 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29947, posNoise = 8, negNoise = 6
17-03-18 02:58:57.704 -07 000000610 INF: Z Motor: After move to -0.132699, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:57.704 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 111 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:58:57.704 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:58:57.744 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 02:58:57.744 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:58:57.744 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.13270923302045. ----------
17-03-18 02:58:57.744 -07 000000610 INF: Cycle	106	Tile	4	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:58:57.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28811, sync = True, waitForSettling = True)
17-03-18 02:58:57.744 -07 000000610 INF: Z Motor: Moving to -0.131888 mm, started at -0.132709 mm, distance = 0.82 um
17-03-18 02:58:57.744 -07 000000610 INF: FPGA: Xmit ZDACW 28811\n [Z Motor]
17-03-18 02:58:57.754 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:58:57.754 -07 000000610 INF: FPGA: 'ZDACW 28811' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:58:57.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:57.754 -07 000000467 INF: FPGA: Recv ZDACR 28811
17-03-18 02:58:57.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:58:57.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.914 -07 000000430 INF: FPGA: Recv ZSGSRD 29825
17-03-18 02:58:57.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.924 -07 000000512 INF: FPGA: Recv ZSGSRD 29821
17-03-18 02:58:57.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.934 -07 000000461 INF: FPGA: Recv ZSGSRD 29822
17-03-18 02:58:57.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.944 -07 000000606 INF: FPGA: Recv ZSGSRD 29822
17-03-18 02:58:57.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.954 -07 000000467 INF: FPGA: Recv ZSGSRD 29816
17-03-18 02:58:57.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.964 -07 000000455 INF: FPGA: Recv ZSGSRD 29819
17-03-18 02:58:57.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.974 -07 000000444 INF: FPGA: Recv ZSGSRD 29819
17-03-18 02:58:57.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.984 -07 000000590 INF: FPGA: Recv ZSGSRD 29817
17-03-18 02:58:57.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:57.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:57.994 -07 000000626 INF: FPGA: Recv ZSGSRD 29821
17-03-18 02:58:58.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:58.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:58:58.004 -07 000000576 INF: FPGA: Recv ZSGSRD 29821
17-03-18 02:58:58.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:58.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:58:58.014 -07 000000629 INF: FPGA: Recv ZPIEZORD 25275
17-03-18 02:58:58.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:58.024 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.396 V. Piezo Error = -10.0 V.
17-03-18 02:58:58.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29820 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29821 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29816 (-131.1 uncal um), Max = 29825 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:58:58.024 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29820, posNoise = 5, negNoise = 4
17-03-18 02:58:58.024 -07 000000610 INF: Z Motor: After move to -0.131888, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:58:58.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:58:58.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:58:58.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:58:58.024 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:58:58.024 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:58:58.024 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:58:58.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:58:58.024 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:58:58.024 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:58:58.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:58:58.024 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:58:58.024 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:58:58.024 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:58:58.024 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:58:58.024 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:58:58.024 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:58:58.034 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:58:58.044 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:58:58.044 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:58:58.044 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:58:58.044 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:58:58.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28988 150\n [Camera]
17-03-18 02:58:58.244 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:58:58.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:58:58.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:58:58.654 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:58.654 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:58.654 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 02:58:58.654 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:58:58.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:58:58.654 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:58.654 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:58.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:58:58.844 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28988 785
17-03-18 02:58:58.984 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:58:59.054 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 400 ms.
17-03-18 02:58:59.054 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-18 02:58:59.054 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:59.054 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 02:58:59.054 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 02:58:59.054 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:59.054 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:59.054 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-18 02:58:59.054 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:59.064 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 02:58:59.184 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:58:59.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:58:59.184 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:58:59.184 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:58:59.184 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:58:59.184 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:58:59.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:58:59.184 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:58:59.184 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:58:59.184 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:58:59.374 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:58:59.374 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:58:59.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28988 150' command took 3 ms to send, 1314 ms to get response, and 1326 ms overall
17-03-18 02:58:59.374 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:58:59.374 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131893358078447. ------
17-03-18 02:58:59.384 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:58:59.384 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13856 mm
17-03-18 02:58:59.384 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:58:59.384 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:58:59.384 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 02:58:59.384 -07 000000606 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 02:58:59.384 -07 000000579 INF: Z Motor: Entering MoveAbsStepped (DAC = 30269, sync = True, waitForSettling = False)
17-03-18 02:58:59.384 -07 000000579 INF: Z Motor: Moving to -0.138563 mm, started at -0.131893 mm, distance = -6.67 um
17-03-18 02:58:59.394 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:59.394 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:58:59.394 -07 000000444 INF: FPGA: Recv YRDPOS 127786
17-03-18 02:58:59.404 -07 000000579 INF: FPGA: Xmit ZDACW 30269\n [Z Motor]
17-03-18 02:58:59.404 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:58:59.404 -07 000000606 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:59.404 -07 000000606 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:58:59.404 -07 000000606 INF: Y Motor: Moving 1339 steps-15
17-03-18 02:58:59.404 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:58:59.414 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:58:59.414 -07 000000579 INF: FPGA: 'ZDACW 30269' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 02:58:59.424 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:58:59.434 -07 000000579 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:58:59.434 -07 000000424 INF: FPGA: Recv ZDACR 30269
17-03-18 02:58:59.444 -07 000000579 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:58:59.444 -07 000000579 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-18 02:58:59.564 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:58:59.564 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:58:59.564 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:59.564 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:58:59.564 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:58:59.564 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:58:59.564 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:59.564 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:58:59.574 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:58:59.574 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:58:59.614 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:58:59.614 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:58:59.794 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 02:58:59.794 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:58:59.844 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:58:59.854 -07 000000462 INF: FPGA: Recv YRDPOS 129482
17-03-18 02:58:59.854 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 02:58:59.854 -07 000000606 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:58:59.854 -07 000000606 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:58:59.854 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 02:58:59.954 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.990831,
17-03-18 02:59:00.804 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:00.804 -07 000000512 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:59:00.814 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:00.814 -07 000000606 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:00.844 -07 000000606 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:00.844 -07 000000606 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:59:00.844 -07 000000606 INF: Y Motor: Moved to 63.2241 after 1456 ms (table move)
17-03-18 02:59:00.844 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138563 mm (DAC = 30269)
17-03-18 02:59:00.844 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.854 -07 000000444 INF: FPGA: Recv ZSGSRD 30864
17-03-18 02:59:00.854 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-18 02:59:00.854 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.854 -07 000000455 INF: FPGA: Recv ZSGSRD 30853
17-03-18 02:59:00.864 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:00.864 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.864 -07 000000579 INF: FPGA: Recv ZSGSRD 30863
17-03-18 02:59:00.874 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:00.874 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.874 -07 000000569 INF: FPGA: Recv ZSGSRD 30856
17-03-18 02:59:00.884 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:00.884 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.884 -07 000000606 INF: FPGA: Recv ZSGSRD 30858
17-03-18 02:59:00.894 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:00.894 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.894 -07 000000467 INF: FPGA: Recv ZSGSRD 30862
17-03-18 02:59:00.904 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:00.904 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.904 -07 000000591 INF: FPGA: Recv ZSGSRD 30853
17-03-18 02:59:00.914 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:00.914 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.914 -07 000000512 INF: FPGA: Recv ZSGSRD 30860
17-03-18 02:59:00.924 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:00.924 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.924 -07 000000424 INF: FPGA: Recv ZSGSRD 30851
17-03-18 02:59:00.934 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:00.934 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:00.934 -07 000000501 INF: FPGA: Recv ZSGSRD 30865
17-03-18 02:59:00.944 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:00.944 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:00.944 -07 000000430 INF: FPGA: Recv ZPIEZORD 26651
17-03-18 02:59:00.954 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:00.954 -07 000000576 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -9.3 V.
17-03-18 02:59:00.954 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30858 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30859 (-137.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30851 (-137.7 uncal um), Max = 30865 (-137.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:59:00.954 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30858, posNoise = 7, negNoise = 7
17-03-18 02:59:00.954 -07 000000576 INF: Z Motor: After move to -0.138563, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:00.954 -07 000000576 INF: Z Motor: Settle wait time = 1459 ms, measure time = 106 ms (allowed 150 ms), total time = 1565 ms
17-03-18 02:59:00.954 -07 000000576 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:01.004 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-18 02:59:01.004 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:01.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:01.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:01.004 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:01.004 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:01.004 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:59:01.004 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:01.004 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:01.004 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:59:01.014 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:59:01.014 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:59:01.024 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-18 02:59:01.024 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-18 02:59:01.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:59:01.064 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:59:01.364 -07 000000629 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:59:01.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:59:01.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:59:01.484 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:59:01.484 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 02:59:01.484 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 458 ms to get response, and 464 ms overall
17-03-18 02:59:01.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-18 02:59:01.534 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:01.604 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 02:59:01.604 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:01.604 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:59:01.604 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 240 ms.
17-03-18 02:59:01.614 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:01.684 -07 000000455 INF: Autofocus start
17-03-18 02:59:01.684 -07 000000455 INF: MeasureProfile start
17-03-18 02:59:01.684 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:59:01.684 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:59:01.694 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:01.694 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:59:01.694 -07 000000455 INF: MeasureProfile done
17-03-18 02:59:01.694 -07 000000455 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 02:59:01.694 -07 000000455 INF: Autofocus finished
17-03-18 02:59:01.894 -07 000000430 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:59:01.894 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-18 02:59:01.894 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138561690281595. ----------
17-03-18 02:59:01.904 -07 000000610 INF: Cycle	106	Tile	5	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:01.904 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28764, sync = True, waitForSettling = True)
17-03-18 02:59:01.904 -07 000000610 INF: Z Motor: Moving to -0.131673 mm, started at -0.138562 mm, distance = 6.89 um
17-03-18 02:59:01.904 -07 000000610 INF: FPGA: Xmit ZDACW 28764\n [Z Motor]
17-03-18 02:59:01.904 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:59:01.914 -07 000000610 INF: FPGA: 'ZDACW 28764' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:01.914 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:01.914 -07 000000512 INF: FPGA: Recv ZDACR 28764
17-03-18 02:59:01.924 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:01.924 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:02.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.074 -07 000000462 INF: FPGA: Recv ZSGSRD 29787
17-03-18 02:59:02.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:02.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.084 -07 000000467 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:59:02.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.094 -07 000000569 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:59:02.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.104 -07 000000424 INF: FPGA: Recv ZSGSRD 29780
17-03-18 02:59:02.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.114 -07 000000591 INF: FPGA: Recv ZSGSRD 29784
17-03-18 02:59:02.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.124 -07 000000590 INF: FPGA: Recv ZSGSRD 29787
17-03-18 02:59:02.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.134 -07 000000467 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:59:02.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.144 -07 000000618 INF: FPGA: Recv ZSGSRD 29785
17-03-18 02:59:02.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.154 -07 000000455 INF: FPGA: Recv ZSGSRD 29782
17-03-18 02:59:02.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:02.164 -07 000000467 INF: FPGA: Recv ZSGSRD 29787
17-03-18 02:59:02.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.174 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:02.174 -07 000000512 INF: FPGA: Recv ZPIEZORD 25278
17-03-18 02:59:02.184 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:02.184 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.9 V.
17-03-18 02:59:02.184 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29786 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29787 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29780 (-130.9 uncal um), Max = 29790 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:02.184 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29786, posNoise = 4, negNoise = 6
17-03-18 02:59:02.184 -07 000000610 INF: Z Motor: After move to -0.131673, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:02.184 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 02:59:02.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:02.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:02.184 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:02.184 -07 000000430 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:02.184 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:02.184 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:02.184 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:02.184 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:02.184 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:59:02.184 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:02.184 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:59:02.184 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:02.184 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:59:02.184 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:02.184 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:59:02.184 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:02.194 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:59:02.194 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:59:02.194 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 02:59:02.194 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:59:02.204 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28941 150\n [Camera]
17-03-18 02:59:02.404 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:02.804 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:02.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:02.804 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:02.804 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:02.804 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:02.804 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:02.814 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:02.814 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:59:02.814 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:02.814 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:59:02.994 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28941 785
17-03-18 02:59:03.144 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:03.184 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 02:59:03.184 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-18 02:59:03.184 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:03.184 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 02:59:03.184 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:59:03.184 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:03.194 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:03.194 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:03.194 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:59:03.204 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:59:03.334 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:03.334 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:03.334 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:03.344 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:03.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:03.344 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:03.344 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:03.344 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:59:03.454 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:03.454 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 02:59:03.524 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:59:03.534 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:03.534 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28941 150' command took 2 ms to send, 1320 ms to get response, and 1327 ms overall
17-03-18 02:59:03.534 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132101
17-03-18 02:59:03.534 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13210 mm
17-03-18 02:59:03.534 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:03.534 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 02:59:03.534 -07 000000579 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 02:59:03.534 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:03.534 -07 000000590 INF: Z Motor: Entering MoveAbsStepped (DAC = 28857, sync = True, waitForSettling = False)
17-03-18 02:59:03.534 -07 000000590 INF: Z Motor: Moving to -0.132099 mm, started at -0.131675 mm, distance = -0.42 um
17-03-18 02:59:03.534 -07 000000430 INF: FPGA: Recv YRDPOS 129483
17-03-18 02:59:03.544 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:59:03.544 -07 000000579 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:03.544 -07 000000579 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:03.544 -07 000000579 INF: Y Motor: Moving 1342 steps-18
17-03-18 02:59:03.544 -07 000000590 INF: FPGA: Xmit ZDACW 28857\n [Z Motor]
17-03-18 02:59:03.544 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:59:03.554 -07 000000590 INF: FPGA: 'ZDACW 28857' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:59:03.554 -07 000000590 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:03.554 -07 000000444 INF: FPGA: Recv ZDACR 28857
17-03-18 02:59:03.564 -07 000000590 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:03.564 -07 000000590 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 02:59:03.564 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:03.724 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:59:03.724 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:59:03.724 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:03.724 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:03.734 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:59:03.854 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 02:59:03.854 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 02:59:03.854 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:03.854 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:03.854 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 02:59:03.934 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:59:03.934 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:59:03.984 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:03.984 -07 000000561 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:59:03.994 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:03.994 -07 000000579 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:03.994 -07 000000579 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 02:59:03.994 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.107 mm/sec
17-03-18 02:59:04.944 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:04.944 -07 000000629 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:59:04.954 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:04.954 -07 000000579 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:04.974 -07 000000579 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:04.974 -07 000000579 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:04.974 -07 000000579 INF: Y Motor: Moved to 64.0571 after 1439 ms (table move)
17-03-18 02:59:04.974 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132099 mm (DAC = 28857)
17-03-18 02:59:04.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:04.984 -07 000000561 INF: FPGA: Recv ZSGSRD 29847
17-03-18 02:59:04.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:59:04.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:04.984 -07 000000444 INF: FPGA: Recv ZSGSRD 29845
17-03-18 02:59:04.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.004 -07 000000569 INF: FPGA: Recv ZSGSRD 29858
17-03-18 02:59:05.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:59:05.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.014 -07 000000461 INF: FPGA: Recv ZSGSRD 29857
17-03-18 02:59:05.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.024 -07 000000502 INF: FPGA: Recv ZSGSRD 29849
17-03-18 02:59:05.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.034 -07 000000467 INF: FPGA: Recv ZSGSRD 29853
17-03-18 02:59:05.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.044 -07 000000618 INF: FPGA: Recv ZSGSRD 29852
17-03-18 02:59:05.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.054 -07 000000579 INF: FPGA: Recv ZSGSRD 29849
17-03-18 02:59:05.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.064 -07 000000606 INF: FPGA: Recv ZSGSRD 29850
17-03-18 02:59:05.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.074 -07 000000444 INF: FPGA: Recv ZSGSRD 29856
17-03-18 02:59:05.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:05.084 -07 000000467 INF: FPGA: Recv ZPIEZORD 25394
17-03-18 02:59:05.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.094 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.8 V.
17-03-18 02:59:05.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29852 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29851 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29845 (-131.3 uncal um), Max = 29858 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:59:05.094 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29852, posNoise = 6, negNoise = 7
17-03-18 02:59:05.094 -07 000000610 INF: Z Motor: After move to -0.132099, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:05.094 -07 000000610 INF: Z Motor: Settle wait time = 1441 ms, measure time = 114 ms (allowed 150 ms), total time = 1555 ms
17-03-18 02:59:05.094 -07 000000610 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:05.134 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 02:59:05.134 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:05.134 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.132098932866983. ----------
17-03-18 02:59:05.134 -07 000000610 INF: Cycle	106	Tile	6	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:05.134 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28681, sync = True, waitForSettling = True)
17-03-18 02:59:05.134 -07 000000610 INF: Z Motor: Moving to -0.131293 mm, started at -0.132099 mm, distance = 0.81 um
17-03-18 02:59:05.134 -07 000000610 INF: FPGA: Xmit ZDACW 28681\n [Z Motor]
17-03-18 02:59:05.134 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 02:59:05.144 -07 000000610 INF: FPGA: 'ZDACW 28681' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:59:05.144 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:05.144 -07 000000579 INF: FPGA: Recv ZDACR 28681
17-03-18 02:59:05.154 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.154 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:05.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.314 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.98264,
17-03-18 02:59:05.314 -07 000000461 INF: FPGA: Recv ZSGSRD 29726
17-03-18 02:59:05.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:59:05.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.344 -07 000000561 INF: FPGA: Recv ZSGSRD 29724
17-03-18 02:59:05.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:59:05.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.354 -07 000000501 INF: FPGA: Recv ZSGSRD 29727
17-03-18 02:59:05.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.374 -07 000000579 INF: FPGA: Recv ZSGSRD 29727
17-03-18 02:59:05.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:59:05.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.384 -07 000000424 INF: FPGA: Recv ZSGSRD 29724
17-03-18 02:59:05.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.404 -07 000000591 INF: FPGA: Recv ZSGSRD 29731
17-03-18 02:59:05.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:59:05.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.414 -07 000000502 INF: FPGA: Recv ZSGSRD 29728
17-03-18 02:59:05.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.424 -07 000000430 INF: FPGA: Recv ZSGSRD 29723
17-03-18 02:59:05.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.434 -07 000000462 INF: FPGA: Recv ZSGSRD 29720
17-03-18 02:59:05.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:05.444 -07 000000629 INF: FPGA: Recv ZSGSRD 29728
17-03-18 02:59:05.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:05.454 -07 000000576 INF: FPGA: Recv ZPIEZORD 25208
17-03-18 02:59:05.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:05.464 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.9 V.
17-03-18 02:59:05.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29726 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29726 (-130.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29720 (-130.5 uncal um), Max = 29731 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:05.464 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29726, posNoise = 5, negNoise = 6
17-03-18 02:59:05.464 -07 000000610 INF: Z Motor: After move to -0.131293, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:05.464 -07 000000610 INF: Z Motor: MoveAbsStepped took 327 ms)
17-03-18 02:59:05.464 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:05.464 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:05.464 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:05.464 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:05.464 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:05.464 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:05.464 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:05.464 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:05.464 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:05.464 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:05.464 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:05.464 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:05.474 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:59:05.474 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:05.474 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:05.474 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:05.484 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:59:05.484 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 02:59:05.484 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:59:05.484 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:59:05.484 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28857 150\n [Camera]
17-03-18 02:59:05.684 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:06.084 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:06.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:06.084 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:06.084 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:06.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:06.084 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:06.094 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:06.094 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:59:06.094 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:06.094 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:59:06.274 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28857 785
17-03-18 02:59:06.424 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 936
17-03-18 02:59:06.464 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:59:06.464 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:59:06.464 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:06.464 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:59:06.464 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:59:06.464 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:06.474 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:06.474 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:06.474 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:59:06.484 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:59:06.534 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:06.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:06.614 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:06.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:06.624 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:06.624 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:06.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:06.624 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:06.624 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:06.624 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:59:06.624 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:06.624 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 02:59:06.814 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:59:06.814 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:06.814 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28857 150' command took 2 ms to send, 1321 ms to get response, and 1326 ms overall
17-03-18 02:59:06.814 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.131903
17-03-18 02:59:06.814 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13190 mm
17-03-18 02:59:06.814 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:06.814 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 02:59:06.814 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 28814, sync = True, waitForSettling = False)
17-03-18 02:59:06.814 -07 000000512 INF: Z Motor: Moving to -0.131902 mm, started at -0.131289 mm, distance = -0.61 um
17-03-18 02:59:06.814 -07 000000512 INF: FPGA: Xmit ZDACW 28814\n [Z Motor]
17-03-18 02:59:06.814 -07 000000461 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 02:59:06.824 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:59:06.824 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:06.824 -07 000000512 INF: FPGA: 'ZDACW 28814' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:59:06.824 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-18 02:59:06.834 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:59:06.834 -07 000000461 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:06.834 -07 000000461 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:06.834 -07 000000461 INF: Y Motor: Moving 1337 steps-11
17-03-18 02:59:06.834 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:06.834 -07 000000591 INF: FPGA: Recv ZDACR 28814
17-03-18 02:59:06.844 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:59:06.844 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:06.844 -07 000000512 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 02:59:06.994 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 02:59:06.994 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 02:59:07.004 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:07.004 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:59:07.004 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:59:07.004 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:07.004 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:07.004 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:59:07.004 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:07.014 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 02:59:07.214 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 02:59:07.214 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:59:07.264 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:07.264 -07 000000569 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:59:07.274 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:07.274 -07 000000461 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:07.274 -07 000000461 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:59:07.274 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.835 mm, average velocity = 2.159 mm/sec
17-03-18 02:59:08.224 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:08.224 -07 000000618 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:59:08.234 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:08.234 -07 000000461 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:08.254 -07 000000461 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:08.254 -07 000000461 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:08.254 -07 000000461 INF: Y Motor: Moved to 64.8789 after 1441 ms (table move)
17-03-18 02:59:08.264 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131902 mm (DAC = 28814)
17-03-18 02:59:08.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.264 -07 000000430 INF: FPGA: Recv ZSGSRD 29814
17-03-18 02:59:08.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:08.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.274 -07 000000576 INF: FPGA: Recv ZSGSRD 29821
17-03-18 02:59:08.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.284 -07 000000455 INF: FPGA: Recv ZSGSRD 29826
17-03-18 02:59:08.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.294 -07 000000626 INF: FPGA: Recv ZSGSRD 29820
17-03-18 02:59:08.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.304 -07 000000424 INF: FPGA: Recv ZSGSRD 29826
17-03-18 02:59:08.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.314 -07 000000502 INF: FPGA: Recv ZSGSRD 29826
17-03-18 02:59:08.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.324 -07 000000629 INF: FPGA: Recv ZSGSRD 29818
17-03-18 02:59:08.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.334 -07 000000467 INF: FPGA: Recv ZSGSRD 29815
17-03-18 02:59:08.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.344 -07 000000569 INF: FPGA: Recv ZSGSRD 29820
17-03-18 02:59:08.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.354 -07 000000424 INF: FPGA: Recv ZSGSRD 29826
17-03-18 02:59:08.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.364 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:08.364 -07 000000512 INF: FPGA: Recv ZPIEZORD 25364
17-03-18 02:59:08.374 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.374 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.8 V.
17-03-18 02:59:08.374 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29821 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29820 (-131.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29814 (-131.1 uncal um), Max = 29826 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:59:08.374 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29821, posNoise = 5, negNoise = 7
17-03-18 02:59:08.374 -07 000000610 INF: Z Motor: After move to -0.131902, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:08.374 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 110 ms (allowed 150 ms), total time = 1553 ms
17-03-18 02:59:08.374 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:08.414 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 02:59:08.414 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:08.414 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.131899782290589. ----------
17-03-18 02:59:08.414 -07 000000610 INF: Cycle	106	Tile	7	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:08.414 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28638, sync = True, waitForSettling = True)
17-03-18 02:59:08.414 -07 000000610 INF: Z Motor: Moving to -0.131096 mm, started at -0.131900 mm, distance = 0.80 um
17-03-18 02:59:08.414 -07 000000610 INF: FPGA: Xmit ZDACW 28638\n [Z Motor]
17-03-18 02:59:08.414 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:59:08.424 -07 000000610 INF: FPGA: 'ZDACW 28638' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:08.424 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:08.424 -07 000000424 INF: FPGA: Recv ZDACR 28638
17-03-18 02:59:08.434 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.434 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:08.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.584 -07 000000561 INF: FPGA: Recv ZSGSRD 29695
17-03-18 02:59:08.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:08.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.594 -07 000000512 INF: FPGA: Recv ZSGSRD 29703
17-03-18 02:59:08.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.604 -07 000000606 INF: FPGA: Recv ZSGSRD 29697
17-03-18 02:59:08.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.614 -07 000000618 INF: FPGA: Recv ZSGSRD 29700
17-03-18 02:59:08.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.624 -07 000000461 INF: FPGA: Recv ZSGSRD 29702
17-03-18 02:59:08.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.634 -07 000000455 INF: FPGA: Recv ZSGSRD 29696
17-03-18 02:59:08.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.644 -07 000000501 INF: FPGA: Recv ZSGSRD 29699
17-03-18 02:59:08.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.654 -07 000000444 INF: FPGA: Recv ZSGSRD 29692
17-03-18 02:59:08.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.664 -07 000000502 INF: FPGA: Recv ZSGSRD 29698
17-03-18 02:59:08.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:08.674 -07 000000424 INF: FPGA: Recv ZSGSRD 29696
17-03-18 02:59:08.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:08.684 -07 000000462 INF: FPGA: Recv ZPIEZORD 25171
17-03-18 02:59:08.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:08.694 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.9 V.
17-03-18 02:59:08.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29698 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29698 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29692 (-130.3 uncal um), Max = 29703 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:08.694 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29698, posNoise = 5, negNoise = 6
17-03-18 02:59:08.694 -07 000000610 INF: Z Motor: After move to -0.131096, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:08.694 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:59:08.694 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:08.694 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:08.694 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:08.694 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:08.694 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:08.694 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:08.694 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:08.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:08.694 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:08.694 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:08.694 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:08.694 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:08.704 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:08.704 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:08.704 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:59:08.704 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:08.714 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:59:08.714 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:08.714 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:59:08.714 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:08.724 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28814 150\n [Camera]
17-03-18 02:59:08.924 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:09.324 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:09.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:09.324 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:09.324 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:09.324 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 02:59:09.324 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:09.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:09.324 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:09.324 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:09.324 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:59:09.514 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28814 785
17-03-18 02:59:09.664 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:09.714 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-18 02:59:09.714 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:59:09.714 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:09.714 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:59:09.714 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:59:09.714 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:09.724 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:59:09.724 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 02:59:09.724 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:59:09.734 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 02:59:09.854 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:09.854 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:09.854 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:09.854 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:09.854 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:59:09.854 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:09.854 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:09.864 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:09.864 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:09.864 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:59:10.044 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:59:10.044 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:10.044 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28814 150' command took 2 ms to send, 1318 ms to get response, and 1326 ms overall
17-03-18 02:59:10.054 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131730
17-03-18 02:59:10.054 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13173 mm
17-03-18 02:59:10.054 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:10.054 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 02:59:10.054 -07 000000455 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 02:59:10.054 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:10.054 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 28776, sync = True, waitForSettling = False)
17-03-18 02:59:10.054 -07 000000629 INF: Z Motor: Moving to -0.131728 mm, started at -0.131110 mm, distance = -0.62 um
17-03-18 02:59:10.054 -07 000000579 INF: FPGA: Recv YRDPOS 132872
17-03-18 02:59:10.064 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:10.064 -07 000000455 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:10.064 -07 000000455 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:10.064 -07 000000455 INF: Y Motor: Moving 1350 steps-28
17-03-18 02:59:10.064 -07 000000629 INF: FPGA: Xmit ZDACW 28776\n [Z Motor]
17-03-18 02:59:10.064 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 02:59:10.074 -07 000000629 INF: FPGA: 'ZDACW 28776' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:59:10.074 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:10.074 -07 000000579 INF: FPGA: Recv ZDACR 28776
17-03-18 02:59:10.084 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:10.084 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:10.084 -07 000000629 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 02:59:10.234 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 02:59:10.234 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:59:10.234 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:10.244 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:59:10.244 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:59:10.244 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:10.244 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:10.244 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:10.244 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:59:10.244 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:59:10.454 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-18 02:59:10.454 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 02:59:10.504 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:10.504 -07 000000590 INF: FPGA: Recv YRDPOS 134582
17-03-18 02:59:10.514 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:10.514 -07 000000455 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:10.514 -07 000000455 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 02:59:10.514 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-18 02:59:10.724 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.970374,
17-03-18 02:59:11.464 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:11.464 -07 000000502 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:59:11.474 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.474 -07 000000455 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:11.504 -07 000000455 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:11.504 -07 000000455 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:59:11.504 -07 000000455 INF: Y Motor: Moved to 65.7144 after 1448 ms (table move)
17-03-18 02:59:11.504 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131728 mm (DAC = 28776)
17-03-18 02:59:11.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.504 -07 000000569 INF: FPGA: Recv ZSGSRD 29799
17-03-18 02:59:11.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:59:11.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.514 -07 000000626 INF: FPGA: Recv ZSGSRD 29790
17-03-18 02:59:11.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.524 -07 000000561 INF: FPGA: Recv ZSGSRD 29798
17-03-18 02:59:11.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.534 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:11.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:11.534 -07 000000462 INF: FPGA: Recv ZSGSRD 29798
17-03-18 02:59:11.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:11.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.544 -07 000000576 INF: FPGA: Recv ZSGSRD 29799
17-03-18 02:59:11.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.554 -07 000000591 INF: FPGA: Recv ZSGSRD 29796
17-03-18 02:59:11.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.564 -07 000000455 INF: FPGA: Recv ZSGSRD 29792
17-03-18 02:59:11.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.574 -07 000000424 INF: FPGA: Recv ZSGSRD 29793
17-03-18 02:59:11.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.584 -07 000000626 INF: FPGA: Recv ZSGSRD 29795
17-03-18 02:59:11.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.594 -07 000000512 INF: FPGA: Recv ZSGSRD 29801
17-03-18 02:59:11.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.604 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:11.604 -07 000000461 INF: FPGA: Recv ZPIEZORD 25352
17-03-18 02:59:11.614 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.614 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.8 V.
17-03-18 02:59:11.614 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29796 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29797 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29790 (-130.9 uncal um), Max = 29801 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:11.614 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29796, posNoise = 5, negNoise = 6
17-03-18 02:59:11.614 -07 000000610 INF: Z Motor: After move to -0.131728, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:11.614 -07 000000610 INF: Z Motor: Settle wait time = 1450 ms, measure time = 106 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:59:11.614 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:11.664 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 02:59:11.664 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:11.664 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.131739176987044. ----------
17-03-18 02:59:11.664 -07 000000610 INF: Cycle	106	Tile	8	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:11.664 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28600, sync = True, waitForSettling = True)
17-03-18 02:59:11.664 -07 000000610 INF: Z Motor: Moving to -0.130922 mm, started at -0.131739 mm, distance = 0.82 um
17-03-18 02:59:11.664 -07 000000610 INF: FPGA: Xmit ZDACW 28600\n [Z Motor]
17-03-18 02:59:11.664 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 02:59:11.674 -07 000000610 INF: FPGA: 'ZDACW 28600' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:59:11.674 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:11.674 -07 000000618 INF: FPGA: Recv ZDACR 28600
17-03-18 02:59:11.684 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.684 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:11.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.834 -07 000000467 INF: FPGA: Recv ZSGSRD 29672
17-03-18 02:59:11.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:11.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.844 -07 000000512 INF: FPGA: Recv ZSGSRD 29672
17-03-18 02:59:11.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.854 -07 000000502 INF: FPGA: Recv ZSGSRD 29671
17-03-18 02:59:11.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.864 -07 000000629 INF: FPGA: Recv ZSGSRD 29672
17-03-18 02:59:11.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.874 -07 000000424 INF: FPGA: Recv ZSGSRD 29668
17-03-18 02:59:11.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.884 -07 000000606 INF: FPGA: Recv ZSGSRD 29670
17-03-18 02:59:11.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.894 -07 000000576 INF: FPGA: Recv ZSGSRD 29665
17-03-18 02:59:11.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.904 -07 000000561 INF: FPGA: Recv ZSGSRD 29675
17-03-18 02:59:11.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.914 -07 000000430 INF: FPGA: Recv ZSGSRD 29671
17-03-18 02:59:11.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:11.924 -07 000000618 INF: FPGA: Recv ZSGSRD 29671
17-03-18 02:59:11.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.934 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:11.934 -07 000000455 INF: FPGA: Recv ZPIEZORD 25160
17-03-18 02:59:11.944 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:11.944 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.9 V.
17-03-18 02:59:11.944 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29671 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29671 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29665 (-130.1 uncal um), Max = 29675 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:11.944 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29671, posNoise = 4, negNoise = 6
17-03-18 02:59:11.944 -07 000000610 INF: Z Motor: After move to -0.130922, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:11.944 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:59:11.944 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:11.944 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:11.944 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:11.944 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:11.944 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:11.944 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:11.944 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:11.944 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:11.944 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:11.944 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:11.944 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:11.944 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:11.954 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:59:11.954 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:11.954 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:11.954 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:11.964 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:59:11.964 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:59:11.964 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-18 02:59:11.964 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 02:59:11.964 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28776 150\n [Camera]
17-03-18 02:59:12.164 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:12.564 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:12.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:12.574 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:12.574 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:12.574 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:12.574 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:12.574 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:12.574 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 02:59:12.574 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:12.574 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 02:59:12.764 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28776 785
17-03-18 02:59:12.914 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:12.954 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:59:12.954 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 02:59:12.954 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:12.954 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:59:12.954 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:59:12.954 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:12.954 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:12.954 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:12.954 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:59:12.964 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:59:13.104 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:13.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:13.104 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:13.104 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:13.104 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 02:59:13.104 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:13.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:13.104 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:13.104 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:13.104 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-18 02:59:13.294 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:59:13.294 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:13.294 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28776 150' command took 2 ms to send, 1315 ms to get response, and 1326 ms overall
17-03-18 02:59:13.294 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:59:13.294 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130936150469324. ------
17-03-18 02:59:13.304 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:59:13.304 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13726 mm
17-03-18 02:59:13.304 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:13.304 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:59:13.304 -07 000000444 INF: Z Motor: Entering MoveAbsStepped (DAC = 29984, sync = True, waitForSettling = False)
17-03-18 02:59:13.304 -07 000000444 INF: Z Motor: Moving to -0.137258 mm, started at -0.130936 mm, distance = -6.32 um
17-03-18 02:59:13.304 -07 000000591 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 02:59:13.304 -07 000000591 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 02:59:13.314 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:59:13.314 -07 000000444 INF: FPGA: Xmit ZDACW 29984\n [Z Motor]
17-03-18 02:59:13.314 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:59:13.324 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:13.324 -07 000000444 INF: FPGA: 'ZDACW 29984' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 02:59:13.324 -07 000000462 INF: FPGA: Recv YRDPOS 134583
17-03-18 02:59:13.334 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:59:13.334 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:59:13.334 -07 000000591 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:13.334 -07 000000591 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:13.334 -07 000000591 INF: Y Motor: Moving 1341 steps-18
17-03-18 02:59:13.344 -07 000000444 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:13.344 -07 000000579 INF: FPGA: Recv ZDACR 29984
17-03-18 02:59:13.354 -07 000000444 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:59:13.354 -07 000000444 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:59:13.354 -07 000000591 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:13.484 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:59:13.484 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:59:13.484 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:13.484 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:59:13.484 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 02:59:13.484 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:13.494 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:13.494 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 02:59:13.494 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:13.494 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:59:13.534 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:59:13.534 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 02:59:13.724 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:59:13.734 -07 000000591 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:59:13.794 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:13.794 -07 000000501 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:59:13.804 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:59:13.804 -07 000000591 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:13.804 -07 000000591 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 02:59:13.804 -07 000000591 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.101 mm/sec
17-03-18 02:59:14.754 -07 000000591 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:14.754 -07 000000467 INF: FPGA: Recv YRDPOS 136272
17-03-18 02:59:14.764 -07 000000591 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.764 -07 000000591 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:14.794 -07 000000591 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:14.794 -07 000000591 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:14.794 -07 000000591 INF: Y Motor: Moved to 66.5391 after 1484 ms (table move)
17-03-18 02:59:14.794 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137258 mm (DAC = 29984)
17-03-18 02:59:14.794 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.794 -07 000000444 INF: FPGA: Recv ZSGSRD 30660
17-03-18 02:59:14.804 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:59:14.804 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.804 -07 000000590 INF: FPGA: Recv ZSGSRD 30655
17-03-18 02:59:14.814 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.814 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.814 -07 000000618 INF: FPGA: Recv ZSGSRD 30649
17-03-18 02:59:14.824 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.824 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.824 -07 000000462 INF: FPGA: Recv ZSGSRD 30657
17-03-18 02:59:14.834 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.834 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.834 -07 000000576 INF: FPGA: Recv ZSGSRD 30649
17-03-18 02:59:14.844 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.844 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.844 -07 000000629 INF: FPGA: Recv ZSGSRD 30659
17-03-18 02:59:14.854 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.854 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.854 -07 000000590 INF: FPGA: Recv ZSGSRD 30653
17-03-18 02:59:14.864 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.864 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.864 -07 000000606 INF: FPGA: Recv ZSGSRD 30659
17-03-18 02:59:14.874 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.874 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.874 -07 000000502 INF: FPGA: Recv ZSGSRD 30659
17-03-18 02:59:14.884 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.884 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:14.884 -07 000000501 INF: FPGA: Recv ZSGSRD 30649
17-03-18 02:59:14.894 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.894 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:14.894 -07 000000626 INF: FPGA: Recv ZPIEZORD 26486
17-03-18 02:59:14.904 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:14.904 -07 000000561 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.575 V. Piezo Error = -9.2 V.
17-03-18 02:59:14.904 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30655 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30656 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30649 (-136.4 uncal um), Max = 30660 (-136.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:14.904 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30655, posNoise = 5, negNoise = 6
17-03-18 02:59:14.904 -07 000000561 INF: Z Motor: After move to -0.137258, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:14.904 -07 000000561 INF: Z Motor: Settle wait time = 1489 ms, measure time = 105 ms (allowed 150 ms), total time = 1594 ms
17-03-18 02:59:14.904 -07 000000561 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:14.954 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1647 ms
17-03-18 02:59:14.954 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:14.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:14.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:14.954 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:14.954 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:59:14.954 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:14.954 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:14.954 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:59:14.954 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:59:14.964 -07 000000579 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 02:59:14.964 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:59:14.974 -07 000000579 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 02:59:14.974 -07 000000579 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 02:59:14.974 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:59:15.024 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:59:15.324 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:59:15.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:59:15.324 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:59:15.324 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) start.
17-03-18 02:59:15.364 -07 000000467 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:59:15.364 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-18 02:59:15.364 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:59:15.454 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1495437528, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 02:59:15.454 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:15.454 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 02:59:15.454 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:59:15.464 -07 000000618 INF: Autofocus start
17-03-18 02:59:15.464 -07 000000618 INF: MeasureProfile start
17-03-18 02:59:15.464 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:59:15.464 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:59:15.474 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:15.474 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:59:15.474 -07 000000618 INF: MeasureProfile done
17-03-18 02:59:15.474 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:59:15.474 -07 000000618 INF: Autofocus finished
17-03-18 02:59:15.674 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:59:15.674 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:59:15.674 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137257575216817. ----------
17-03-18 02:59:15.674 -07 000000610 INF: Cycle	106	Tile	9	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:15.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28491, sync = True, waitForSettling = True)
17-03-18 02:59:15.684 -07 000000610 INF: Z Motor: Moving to -0.130423 mm, started at -0.137258 mm, distance = 6.83 um
17-03-18 02:59:15.684 -07 000000610 INF: FPGA: Xmit ZDACW 28491\n [Z Motor]
17-03-18 02:59:15.684 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:59:15.694 -07 000000610 INF: FPGA: 'ZDACW 28491' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:15.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:15.694 -07 000000461 INF: FPGA: Recv ZDACR 28491
17-03-18 02:59:15.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:15.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.854 -07 000000502 INF: FPGA: Recv ZSGSRD 29593
17-03-18 02:59:15.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:15.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.864 -07 000000591 INF: FPGA: Recv ZSGSRD 29598
17-03-18 02:59:15.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.874 -07 000000606 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:59:15.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.884 -07 000000462 INF: FPGA: Recv ZSGSRD 29593
17-03-18 02:59:15.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.894 -07 000000629 INF: FPGA: Recv ZSGSRD 29596
17-03-18 02:59:15.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.904 -07 000000576 INF: FPGA: Recv ZSGSRD 29594
17-03-18 02:59:15.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.914 -07 000000512 INF: FPGA: Recv ZSGSRD 29592
17-03-18 02:59:15.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.924 -07 000000590 INF: FPGA: Recv ZSGSRD 29586
17-03-18 02:59:15.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.934 -07 000000618 INF: FPGA: Recv ZSGSRD 29591
17-03-18 02:59:15.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:15.944 -07 000000569 INF: FPGA: Recv ZSGSRD 29601
17-03-18 02:59:15.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:15.954 -07 000000430 INF: FPGA: Recv ZPIEZORD 25083
17-03-18 02:59:15.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:15.964 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.9 V.
17-03-18 02:59:15.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29594 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29594 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29586 (-129.6 uncal um), Max = 29601 (-129.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:59:15.964 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29594, posNoise = 7, negNoise = 8
17-03-18 02:59:15.964 -07 000000610 INF: Z Motor: After move to -0.130423, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:15.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-18 02:59:15.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:15.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:15.974 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:15.974 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:15.974 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:15.974 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:15.974 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:15.974 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:15.974 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:15.974 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:15.974 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:15.974 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:15.974 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:59:15.974 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:15.974 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:59:15.974 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:15.994 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 02:59:15.994 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:59:15.994 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:59:15.994 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:59:15.994 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28668 150\n [Camera]
17-03-18 02:59:16.084 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.986717,
17-03-18 02:59:16.194 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:16.534 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:16.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:16.594 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:16.594 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:16.594 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:16.594 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:16.594 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-18 02:59:16.594 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:16.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:16.594 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:16.594 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:16.594 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-18 02:59:16.784 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28668 785
17-03-18 02:59:16.934 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:16.974 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:59:16.974 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:59:16.974 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:16.974 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:16.974 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:59:16.974 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:59:16.974 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:16.984 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:16.984 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:59:16.984 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:59:17.134 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 02:59:17.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 02:59:17.134 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:17.134 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:17.134 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-18 02:59:17.134 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 02:59:17.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 02:59:17.134 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:17.134 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:17.134 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-18 02:59:17.324 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:59:17.324 -07 000000606 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:17.324 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28668 150' command took 2 ms to send, 1320 ms to get response, and 1327 ms overall
17-03-18 02:59:17.324 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131346
17-03-18 02:59:17.324 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13135 mm
17-03-18 02:59:17.324 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:17.324 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 28692, sync = True, waitForSettling = False)
17-03-18 02:59:17.324 -07 000000591 INF: Z Motor: Moving to -0.131344 mm, started at -0.130441 mm, distance = -0.90 um
17-03-18 02:59:17.324 -07 000000591 INF: FPGA: Xmit ZDACW 28692\n [Z Motor]
17-03-18 02:59:17.324 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 02:59:17.324 -07 000000461 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 02:59:17.334 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:17.334 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 02:59:17.334 -07 000000591 INF: FPGA: 'ZDACW 28692' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:17.334 -07 000000629 INF: FPGA: Recv YRDPOS 136273
17-03-18 02:59:17.344 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 02:59:17.344 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:17.344 -07 000000461 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:17.344 -07 000000455 INF: FPGA: Recv ZDACR 28692
17-03-18 02:59:17.344 -07 000000461 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:17.344 -07 000000461 INF: Y Motor: Moving 1349 steps-28
17-03-18 02:59:17.354 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:59:17.354 -07 000000591 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 02:59:17.354 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:17.514 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:59:17.514 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:59:17.514 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:17.514 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 02:59:17.514 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 02:59:17.514 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:17.524 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:17.524 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:59:17.524 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:59:17.534 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 02:59:17.734 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:59:17.734 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 385 ms overall
17-03-18 02:59:17.774 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:17.784 -07 000000501 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:59:17.784 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:17.784 -07 000000461 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:17.784 -07 000000461 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 02:59:17.784 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.185 mm/sec
17-03-18 02:59:18.734 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:18.734 -07 000000606 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:59:18.744 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:18.744 -07 000000461 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:18.764 -07 000000461 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:18.764 -07 000000461 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:18.764 -07 000000461 INF: Y Motor: Moved to 67.3721 after 1441 ms (table move)
17-03-18 02:59:18.774 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131344 mm (DAC = 28692)
17-03-18 02:59:18.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.774 -07 000000579 INF: FPGA: Recv ZSGSRD 29734
17-03-18 02:59:18.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:18.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.784 -07 000000424 INF: FPGA: Recv ZSGSRD 29735
17-03-18 02:59:18.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.794 -07 000000502 INF: FPGA: Recv ZSGSRD 29737
17-03-18 02:59:18.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.804 -07 000000606 INF: FPGA: Recv ZSGSRD 29725
17-03-18 02:59:18.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.814 -07 000000590 INF: FPGA: Recv ZSGSRD 29736
17-03-18 02:59:18.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.824 -07 000000512 INF: FPGA: Recv ZSGSRD 29736
17-03-18 02:59:18.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.834 -07 000000561 INF: FPGA: Recv ZSGSRD 29738
17-03-18 02:59:18.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.844 -07 000000461 INF: FPGA: Recv ZSGSRD 29737
17-03-18 02:59:18.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.854 -07 000000606 INF: FPGA: Recv ZSGSRD 29731
17-03-18 02:59:18.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:18.864 -07 000000455 INF: FPGA: Recv ZSGSRD 29736
17-03-18 02:59:18.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:18.874 -07 000000576 INF: FPGA: Recv ZPIEZORD 25290
17-03-18 02:59:18.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.884 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -9.8 V.
17-03-18 02:59:18.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29734 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29736 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29725 (-130.5 uncal um), Max = 29738 (-130.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:59:18.884 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29734, posNoise = 4, negNoise = 9
17-03-18 02:59:18.884 -07 000000610 INF: Z Motor: After move to -0.131344, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:18.884 -07 000000610 INF: Z Motor: Settle wait time = 1444 ms, measure time = 109 ms (allowed 150 ms), total time = 1553 ms
17-03-18 02:59:18.884 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:18.934 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-18 02:59:18.934 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:18.934 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.131340875834255. ----------
17-03-18 02:59:18.934 -07 000000610 INF: Cycle	106	Tile	10	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:18.934 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28516, sync = True, waitForSettling = True)
17-03-18 02:59:18.934 -07 000000610 INF: Z Motor: Moving to -0.130538 mm, started at -0.131341 mm, distance = 0.80 um
17-03-18 02:59:18.934 -07 000000610 INF: FPGA: Xmit ZDACW 28516\n [Z Motor]
17-03-18 02:59:18.934 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 02:59:18.944 -07 000000610 INF: FPGA: 'ZDACW 28516' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:18.944 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:18.944 -07 000000444 INF: FPGA: Recv ZDACR 28516
17-03-18 02:59:18.954 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:18.954 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:19.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.104 -07 000000579 INF: FPGA: Recv ZSGSRD 29608
17-03-18 02:59:19.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:19.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.114 -07 000000455 INF: FPGA: Recv ZSGSRD 29609
17-03-18 02:59:19.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.124 -07 000000576 INF: FPGA: Recv ZSGSRD 29602
17-03-18 02:59:19.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.134 -07 000000462 INF: FPGA: Recv ZSGSRD 29608
17-03-18 02:59:19.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.144 -07 000000430 INF: FPGA: Recv ZSGSRD 29611
17-03-18 02:59:19.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.154 -07 000000501 INF: FPGA: Recv ZSGSRD 29606
17-03-18 02:59:19.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.164 -07 000000502 INF: FPGA: Recv ZSGSRD 29607
17-03-18 02:59:19.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.174 -07 000000512 INF: FPGA: Recv ZSGSRD 29610
17-03-18 02:59:19.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.184 -07 000000569 INF: FPGA: Recv ZSGSRD 29613
17-03-18 02:59:19.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:19.194 -07 000000461 INF: FPGA: Recv ZSGSRD 29608
17-03-18 02:59:19.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:19.204 -07 000000467 INF: FPGA: Recv ZPIEZORD 25092
17-03-18 02:59:19.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:19.214 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.9 V.
17-03-18 02:59:19.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29608 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29608 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29602 (-129.7 uncal um), Max = 29613 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:19.214 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29608, posNoise = 5, negNoise = 6
17-03-18 02:59:19.214 -07 000000610 INF: Z Motor: After move to -0.130538, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:19.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 02:59:19.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:19.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:19.214 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:19.214 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:19.214 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:19.214 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:19.214 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:19.214 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:19.214 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:19.214 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:19.214 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:19.214 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:19.224 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:19.224 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:19.224 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:59:19.224 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:19.234 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:59:19.234 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:19.234 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:59:19.234 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:19.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28692 150\n [Camera]
17-03-18 02:59:19.434 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:19.844 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:19.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:19.844 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:19.844 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:19.844 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-18 02:59:19.844 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:19.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:19.844 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:19.844 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:19.844 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-18 02:59:20.034 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28692 785
17-03-18 02:59:20.184 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:20.214 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:59:20.214 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:59:20.214 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:20.214 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:59:20.214 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:59:20.214 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:20.224 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:20.224 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:59:20.224 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:20.234 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:59:20.374 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:20.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:20.374 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:20.374 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:20.374 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-18 02:59:20.374 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:20.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:20.374 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:20.374 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:20.374 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-18 02:59:20.564 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:59:20.564 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:20.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28692 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:59:20.564 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.130817
17-03-18 02:59:20.564 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13082 mm
17-03-18 02:59:20.564 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:20.574 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 02:59:20.574 -07 000000444 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 02:59:20.574 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:20.574 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28577, sync = True, waitForSettling = False)
17-03-18 02:59:20.574 -07 000000424 INF: Z Motor: Moving to -0.130817 mm, started at -0.130531 mm, distance = -0.29 um
17-03-18 02:59:20.574 -07 000000626 INF: FPGA: Recv YRDPOS 137978
17-03-18 02:59:20.584 -07 000000444 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:20.584 -07 000000444 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:20.584 -07 000000444 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:20.584 -07 000000444 INF: Y Motor: Moving 1345 steps-22
17-03-18 02:59:20.594 -07 000000424 INF: FPGA: Xmit ZDACW 28577\n [Z Motor]
17-03-18 02:59:20.594 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:59:20.604 -07 000000424 INF: FPGA: 'ZDACW 28577' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:59:20.604 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:20.614 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:20.614 -07 000000455 INF: FPGA: Recv ZDACR 28577
17-03-18 02:59:20.624 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:59:20.624 -07 000000424 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 02:59:20.764 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 02:59:20.764 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:59:20.764 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:20.764 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 02:59:20.764 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:59:20.764 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:20.764 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:20.764 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:59:20.764 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:20.774 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 02:59:20.974 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 02:59:20.974 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:59:21.024 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:21.034 -07 000000590 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:59:21.034 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-18 02:59:21.034 -07 000000444 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:21.034 -07 000000444 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 02:59:21.034 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.112 mm/sec
17-03-18 02:59:21.444 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 3.985358,
17-03-18 02:59:21.534 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:21.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:21.984 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:21.984 -07 000000512 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:59:21.994 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:21.994 -07 000000444 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:22.014 -07 000000444 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:22.014 -07 000000444 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:22.014 -07 000000444 INF: Y Motor: Moved to 68.2051 after 1446 ms (table move)
17-03-18 02:59:22.014 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130817 mm (DAC = 28577)
17-03-18 02:59:22.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.024 -07 000000590 INF: FPGA: Recv ZSGSRD 29658
17-03-18 02:59:22.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:22.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.034 -07 000000561 INF: FPGA: Recv ZSGSRD 29656
17-03-18 02:59:22.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.044 -07 000000502 INF: FPGA: Recv ZSGSRD 29660
17-03-18 02:59:22.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.054 -07 000000591 INF: FPGA: Recv ZSGSRD 29648
17-03-18 02:59:22.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.064 -07 000000462 INF: FPGA: Recv ZSGSRD 29652
17-03-18 02:59:22.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.074 -07 000000424 INF: FPGA: Recv ZSGSRD 29651
17-03-18 02:59:22.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.084 -07 000000606 INF: FPGA: Recv ZSGSRD 29652
17-03-18 02:59:22.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.094 -07 000000502 INF: FPGA: Recv ZSGSRD 29651
17-03-18 02:59:22.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.104 -07 000000467 INF: FPGA: Recv ZSGSRD 29651
17-03-18 02:59:22.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.114 -07 000000455 INF: FPGA: Recv ZSGSRD 29658
17-03-18 02:59:22.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.124 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:22.124 -07 000000424 INF: FPGA: Recv ZPIEZORD 25181
17-03-18 02:59:22.134 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.134 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.8 V.
17-03-18 02:59:22.134 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29654 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29652 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29648 (-130.0 uncal um), Max = 29660 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:22.134 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29654, posNoise = 6, negNoise = 6
17-03-18 02:59:22.134 -07 000000610 INF: Z Motor: After move to -0.130817, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:22.134 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 111 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:59:22.134 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:22.174 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-18 02:59:22.174 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:22.174 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.130826938862914. ----------
17-03-18 02:59:22.174 -07 000000610 INF: Cycle	106	Tile	11	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:22.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28400, sync = True, waitForSettling = True)
17-03-18 02:59:22.174 -07 000000610 INF: Z Motor: Moving to -0.130007 mm, started at -0.130827 mm, distance = 0.82 um
17-03-18 02:59:22.174 -07 000000610 INF: FPGA: Xmit ZDACW 28400\n [Z Motor]
17-03-18 02:59:22.174 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:59:22.184 -07 000000610 INF: FPGA: 'ZDACW 28400' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:22.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:22.184 -07 000000461 INF: FPGA: Recv ZDACR 28400
17-03-18 02:59:22.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:22.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.344 -07 000000590 INF: FPGA: Recv ZSGSRD 29535
17-03-18 02:59:22.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:22.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.354 -07 000000626 INF: FPGA: Recv ZSGSRD 29533
17-03-18 02:59:22.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.364 -07 000000424 INF: FPGA: Recv ZSGSRD 29528
17-03-18 02:59:22.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.374 -07 000000606 INF: FPGA: Recv ZSGSRD 29523
17-03-18 02:59:22.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.384 -07 000000502 INF: FPGA: Recv ZSGSRD 29530
17-03-18 02:59:22.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.394 -07 000000590 INF: FPGA: Recv ZSGSRD 29519
17-03-18 02:59:22.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.404 -07 000000455 INF: FPGA: Recv ZSGSRD 29525
17-03-18 02:59:22.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.414 -07 000000579 INF: FPGA: Recv ZSGSRD 29527
17-03-18 02:59:22.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.424 -07 000000606 INF: FPGA: Recv ZSGSRD 29530
17-03-18 02:59:22.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:22.434 -07 000000461 INF: FPGA: Recv ZSGSRD 29532
17-03-18 02:59:22.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:22.444 -07 000000512 INF: FPGA: Recv ZPIEZORD 25002
17-03-18 02:59:22.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:22.454 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.9 V.
17-03-18 02:59:22.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29528 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29529 (-129.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29519 (-129.2 uncal um), Max = 29535 (-129.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:59:22.454 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29528, posNoise = 7, negNoise = 9
17-03-18 02:59:22.454 -07 000000610 INF: Z Motor: After move to -0.130007, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:22.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:59:22.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:22.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:22.454 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:22.454 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:22.454 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:22.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:22.454 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:22.454 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:22.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:22.454 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:22.454 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:22.454 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:22.464 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 02:59:22.464 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:22.464 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:59:22.464 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:22.474 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 02:59:22.474 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:59:22.474 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:59:22.474 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 02:59:22.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28577 150\n [Camera]
17-03-18 02:59:22.674 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:23.074 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:23.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:23.074 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:23.074 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:23.074 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-18 02:59:23.074 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:23.074 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:23.074 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:23.074 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:23.074 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-18 02:59:23.264 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28577 785
17-03-18 02:59:23.414 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:23.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:59:23.444 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 02:59:23.444 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:23.454 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:59:23.454 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:59:23.454 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:23.454 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:23.454 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:23.454 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:59:23.464 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 02:59:23.604 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:23.604 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:23.604 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:23.604 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:23.604 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-18 02:59:23.614 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:23.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:23.614 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:23.764 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:23.764 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:59:23.794 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:59:23.794 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:23.794 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28577 150' command took 2 ms to send, 1319 ms to get response, and 1326 ms overall
17-03-18 02:59:23.804 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130726
17-03-18 02:59:23.804 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13073 mm
17-03-18 02:59:23.804 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:23.804 -07 000000629 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 02:59:23.804 -07 000000629 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-18 02:59:23.804 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:23.804 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28557, sync = True, waitForSettling = False)
17-03-18 02:59:23.804 -07 000000618 INF: Z Motor: Moving to -0.130726 mm, started at -0.130017 mm, distance = -0.71 um
17-03-18 02:59:23.804 -07 000000444 INF: FPGA: Recv YRDPOS 139684
17-03-18 02:59:23.814 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:59:23.814 -07 000000629 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:23.814 -07 000000629 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:23.814 -07 000000629 INF: Y Motor: Moving 1340 steps-15
17-03-18 02:59:23.814 -07 000000618 INF: FPGA: Xmit ZDACW 28557\n [Z Motor]
17-03-18 02:59:23.814 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 02:59:23.824 -07 000000618 INF: FPGA: 'ZDACW 28557' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:59:23.824 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:23.824 -07 000000591 INF: FPGA: Recv ZDACR 28557
17-03-18 02:59:23.834 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:23.834 -07 000000618 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 02:59:23.834 -07 000000629 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:24.014 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 408 ms.
17-03-18 02:59:24.014 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-18 02:59:24.014 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:24.024 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:24.024 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-18 02:59:24.144 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 02:59:24.144 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 02:59:24.144 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:24.144 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:24.154 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-18 02:59:24.204 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 02:59:24.204 -07 000000629 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 02:59:24.254 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:24.254 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-18 02:59:24.264 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:59:24.264 -07 000000629 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:24.264 -07 000000629 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 02:59:24.264 -07 000000629 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-18 02:59:25.214 -07 000000629 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:25.214 -07 000000579 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:59:25.224 -07 000000629 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:25.224 -07 000000629 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:25.244 -07 000000629 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:25.244 -07 000000629 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:59:25.244 -07 000000629 INF: Y Motor: Moved to 69.0278 after 1443 ms (table move)
17-03-18 02:59:25.254 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130726 mm (DAC = 28557)
17-03-18 02:59:25.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.254 -07 000000455 INF: FPGA: Recv ZSGSRD 29640
17-03-18 02:59:25.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.264 -07 000000444 INF: FPGA: Recv ZSGSRD 29641
17-03-18 02:59:25.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.274 -07 000000606 INF: FPGA: Recv ZSGSRD 29643
17-03-18 02:59:25.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.284 -07 000000467 INF: FPGA: Recv ZSGSRD 29641
17-03-18 02:59:25.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.294 -07 000000626 INF: FPGA: Recv ZSGSRD 29639
17-03-18 02:59:25.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.304 -07 000000512 INF: FPGA: Recv ZSGSRD 29638
17-03-18 02:59:25.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.314 -07 000000461 INF: FPGA: Recv ZSGSRD 29635
17-03-18 02:59:25.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:25.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.324 -07 000000501 INF: FPGA: Recv ZSGSRD 29639
17-03-18 02:59:25.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.334 -07 000000576 INF: FPGA: Recv ZSGSRD 29635
17-03-18 02:59:25.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.344 -07 000000569 INF: FPGA: Recv ZSGSRD 29639
17-03-18 02:59:25.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.354 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:25.354 -07 000000591 INF: FPGA: Recv ZPIEZORD 25164
17-03-18 02:59:25.364 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.364 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.8 V.
17-03-18 02:59:25.364 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29639 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29639 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29635 (-129.9 uncal um), Max = 29643 (-130.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:59:25.364 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29639, posNoise = 4, negNoise = 4
17-03-18 02:59:25.364 -07 000000610 INF: Z Motor: After move to -0.130726, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:25.364 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 111 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:59:25.364 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:25.404 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-18 02:59:25.404 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:25.404 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.130730575680788. ----------
17-03-18 02:59:25.404 -07 000000610 INF: Cycle	106	Tile	12	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:25.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28380, sync = True, waitForSettling = True)
17-03-18 02:59:25.404 -07 000000610 INF: Z Motor: Moving to -0.129915 mm, started at -0.130731 mm, distance = 0.82 um
17-03-18 02:59:25.404 -07 000000610 INF: FPGA: Xmit ZDACW 28380\n [Z Motor]
17-03-18 02:59:25.404 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:59:25.414 -07 000000610 INF: FPGA: 'ZDACW 28380' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:59:25.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:25.414 -07 000000467 INF: FPGA: Recv ZDACR 28380
17-03-18 02:59:25.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:25.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.574 -07 000000461 INF: FPGA: Recv ZSGSRD 29512
17-03-18 02:59:25.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:25.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.584 -07 000000606 INF: FPGA: Recv ZSGSRD 29515
17-03-18 02:59:25.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.594 -07 000000576 INF: FPGA: Recv ZSGSRD 29514
17-03-18 02:59:25.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.604 -07 000000618 INF: FPGA: Recv ZSGSRD 29513
17-03-18 02:59:25.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.614 -07 000000591 INF: FPGA: Recv ZSGSRD 29510
17-03-18 02:59:25.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.624 -07 000000629 INF: FPGA: Recv ZSGSRD 29510
17-03-18 02:59:25.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.634 -07 000000455 INF: FPGA: Recv ZSGSRD 29513
17-03-18 02:59:25.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.644 -07 000000590 INF: FPGA: Recv ZSGSRD 29510
17-03-18 02:59:25.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.654 -07 000000502 INF: FPGA: Recv ZSGSRD 29517
17-03-18 02:59:25.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:25.664 -07 000000424 INF: FPGA: Recv ZSGSRD 29510
17-03-18 02:59:25.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:25.674 -07 000000512 INF: FPGA: Recv ZPIEZORD 24968
17-03-18 02:59:25.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:25.684 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -10.0 V.
17-03-18 02:59:25.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29512 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29512 (-129.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29510 (-129.1 uncal um), Max = 29517 (-129.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:59:25.684 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29512, posNoise = 5, negNoise = 2
17-03-18 02:59:25.684 -07 000000610 INF: Z Motor: After move to -0.129915, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:25.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:59:25.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:25.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:25.684 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:25.684 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:25.684 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:25.684 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:25.684 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:25.684 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:25.684 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:25.684 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:25.684 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:25.684 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:25.684 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:59:25.684 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:25.694 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:25.694 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:25.704 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:59:25.704 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:59:25.704 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:59:25.704 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:59:25.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28557 150\n [Camera]
17-03-18 02:59:25.904 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:26.304 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:26.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:26.314 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:26.314 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:26.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:26.314 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:26.314 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:26.314 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:59:26.324 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:26.324 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:59:26.504 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28557 785
17-03-18 02:59:26.534 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:26.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:26.654 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:26.694 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:59:26.694 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 02:59:26.694 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:26.704 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:26.704 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 02:59:26.704 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:59:26.704 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:26.704 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:26.704 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:59:26.704 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:59:26.804 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.016692,
17-03-18 02:59:26.844 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:26.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:26.844 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:26.844 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:26.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:26.844 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:26.964 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:26.964 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 02:59:26.974 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:26.974 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:59:27.034 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:59:27.034 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:27.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28557 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:59:27.034 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:59:27.034 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.129914700738784. ------
17-03-18 02:59:27.044 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:59:27.044 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13631 mm
17-03-18 02:59:27.044 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:27.044 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:59:27.044 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29777, sync = True, waitForSettling = False)
17-03-18 02:59:27.044 -07 000000626 INF: Z Motor: Moving to -0.136310 mm, started at -0.129915 mm, distance = -6.40 um
17-03-18 02:59:27.044 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 02:59:27.044 -07 000000618 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-18 02:59:27.054 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:59:27.054 -07 000000626 INF: FPGA: Xmit ZDACW 29777\n [Z Motor]
17-03-18 02:59:27.054 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:59:27.064 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:27.064 -07 000000626 INF: FPGA: 'ZDACW 29777' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 02:59:27.064 -07 000000576 INF: FPGA: Recv YRDPOS 141369
17-03-18 02:59:27.074 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:59:27.074 -07 000000618 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:27.074 -07 000000618 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:27.074 -07 000000618 INF: Y Motor: Moving 1352 steps-31
17-03-18 02:59:27.074 -07 000000579 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:59:27.084 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:27.084 -07 000000576 INF: FPGA: Recv ZDACR 29777
17-03-18 02:59:27.094 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 02:59:27.094 -07 000000626 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 02:59:27.094 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:27.274 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:59:27.274 -07 000000579 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-18 02:59:27.344 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:59:27.344 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:59:27.344 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:27.344 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:59:27.344 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:59:27.354 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:27.354 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:27.354 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:27.354 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-18 02:59:27.364 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-18 02:59:27.464 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 02:59:27.464 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-18 02:59:27.514 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:27.514 -07 000000424 INF: FPGA: Recv YRDPOS 143080
17-03-18 02:59:27.524 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:59:27.524 -07 000000618 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:27.524 -07 000000618 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 02:59:27.524 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-18 02:59:28.474 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:28.474 -07 000000579 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:59:28.484 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.484 -07 000000618 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:28.504 -07 000000618 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:28.504 -07 000000618 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:59:28.504 -07 000000618 INF: Y Motor: Moved to 69.8638 after 1462 ms (table move)
17-03-18 02:59:28.514 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136310 mm (DAC = 29777)
17-03-18 02:59:28.514 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.514 -07 000000576 INF: FPGA: Recv ZSGSRD 30504
17-03-18 02:59:28.524 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:28.524 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.524 -07 000000579 INF: FPGA: Recv ZSGSRD 30514
17-03-18 02:59:28.534 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.534 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.534 -07 000000606 INF: FPGA: Recv ZSGSRD 30512
17-03-18 02:59:28.544 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.544 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.544 -07 000000424 INF: FPGA: Recv ZSGSRD 30510
17-03-18 02:59:28.554 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.554 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.554 -07 000000467 INF: FPGA: Recv ZSGSRD 30505
17-03-18 02:59:28.564 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.564 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.564 -07 000000430 INF: FPGA: Recv ZSGSRD 30512
17-03-18 02:59:28.574 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.574 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.574 -07 000000579 INF: FPGA: Recv ZSGSRD 30505
17-03-18 02:59:28.584 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.584 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.584 -07 000000455 INF: FPGA: Recv ZSGSRD 30504
17-03-18 02:59:28.594 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.594 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.594 -07 000000501 INF: FPGA: Recv ZSGSRD 30510
17-03-18 02:59:28.604 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.604 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:28.604 -07 000000618 INF: FPGA: Recv ZSGSRD 30512
17-03-18 02:59:28.614 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.614 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:28.614 -07 000000502 INF: FPGA: Recv ZPIEZORD 26315
17-03-18 02:59:28.624 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:28.624 -07 000000512 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -9.2 V.
17-03-18 02:59:28.624 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30509 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30510 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30504 (-135.5 uncal um), Max = 30514 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:59:28.624 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30509, posNoise = 5, negNoise = 5
17-03-18 02:59:28.624 -07 000000512 INF: Z Motor: After move to -0.136310, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:28.624 -07 000000512 INF: Z Motor: Settle wait time = 1465 ms, measure time = 109 ms (allowed 150 ms), total time = 1574 ms
17-03-18 02:59:28.624 -07 000000512 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:28.674 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 02:59:28.674 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:28.674 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:28.674 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:28.674 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:28.674 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:28.674 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:59:28.674 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:28.674 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:28.674 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:59:28.684 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:59:28.684 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:59:28.694 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 02:59:28.694 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 02:59:28.694 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:59:28.744 -07 000000579 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:59:29.044 -07 000000444 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:59:29.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:59:29.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:59:29.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 02:59:29.084 -07 000000629 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:59:29.084 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-18 02:59:29.084 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall
17-03-18 02:59:29.174 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:59:29.174 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:29.174 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:59:29.174 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-18 02:59:29.184 -07 000000606 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:59:29.184 -07 000000455 INF: Autofocus start
17-03-18 02:59:29.184 -07 000000455 INF: MeasureProfile start
17-03-18 02:59:29.184 -07 000000467 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:59:29.194 -07 000000606 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:29.194 -07 000000606 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:59:29.194 -07 000000455 INF: MeasureProfile done
17-03-18 02:59:29.194 -07 000000455 INF: X=16  Z correction [um]=0.0530179
17-03-18 02:59:29.194 -07 000000455 INF: Autofocus finished
17-03-18 02:59:29.394 -07 000000590 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:59:29.394 -07 000000606 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-18 02:59:29.394 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.13631964024412. ----------
17-03-18 02:59:29.394 -07 000000610 INF: Cycle	106	Tile	13	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:29.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28301, sync = True, waitForSettling = True)
17-03-18 02:59:29.404 -07 000000610 INF: Z Motor: Moving to -0.129554 mm, started at -0.136320 mm, distance = 6.77 um
17-03-18 02:59:29.404 -07 000000610 INF: FPGA: Xmit ZDACW 28301\n [Z Motor]
17-03-18 02:59:29.404 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 02:59:29.414 -07 000000610 INF: FPGA: 'ZDACW 28301' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:29.414 -07 000000626 INF: FPGA: Recv ZDACR 28301
17-03-18 02:59:29.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:29.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.574 -07 000000569 INF: FPGA: Recv ZSGSRD 29449
17-03-18 02:59:29.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:29.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.584 -07 000000629 INF: FPGA: Recv ZSGSRD 29454
17-03-18 02:59:29.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.594 -07 000000462 INF: FPGA: Recv ZSGSRD 29454
17-03-18 02:59:29.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.604 -07 000000591 INF: FPGA: Recv ZSGSRD 29456
17-03-18 02:59:29.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.614 -07 000000579 INF: FPGA: Recv ZSGSRD 29457
17-03-18 02:59:29.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.624 -07 000000424 INF: FPGA: Recv ZSGSRD 29453
17-03-18 02:59:29.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.634 -07 000000461 INF: FPGA: Recv ZSGSRD 29461
17-03-18 02:59:29.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.644 -07 000000462 INF: FPGA: Recv ZSGSRD 29460
17-03-18 02:59:29.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.654 -07 000000569 INF: FPGA: Recv ZSGSRD 29456
17-03-18 02:59:29.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:29.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:29.664 -07 000000626 INF: FPGA: Recv ZSGSRD 29453
17-03-18 02:59:29.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:29.674 -07 000000590 INF: FPGA: Recv ZPIEZORD 24940
17-03-18 02:59:29.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:29.684 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.318 V. Piezo Error = -9.9 V.
17-03-18 02:59:29.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29455 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29455 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29449 (-128.7 uncal um), Max = 29461 (-128.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:29.684 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29455, posNoise = 6, negNoise = 6
17-03-18 02:59:29.684 -07 000000610 INF: Z Motor: After move to -0.129554, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:29.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:59:29.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:29.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:29.684 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:29.684 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:29.684 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:29.684 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:29.684 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:29.684 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:29.684 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:29.684 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:29.684 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:29.684 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:29.684 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:59:29.694 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:29.694 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 02:59:29.694 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:29.704 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:59:29.704 -07 000000430 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:29.704 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:59:29.704 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:29.714 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28478 150\n [Camera]
17-03-18 02:59:29.904 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:30.314 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:30.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:30.314 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:30.314 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:30.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:30.314 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:30.314 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:30.314 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:59:30.314 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:30.314 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 02:59:30.504 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28478 785
17-03-18 02:59:30.654 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:30.684 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 02:59:30.684 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 02:59:30.684 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:30.694 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 02:59:30.694 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 02:59:30.694 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:30.694 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:30.694 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:59:30.694 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:30.704 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:59:30.844 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:30.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:30.844 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:30.844 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:30.844 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:59:30.844 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:30.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:30.844 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:30.844 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:30.844 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:59:31.034 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:59:31.034 -07 000000467 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:31.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28478 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:59:31.034 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129490
17-03-18 02:59:31.034 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12949 mm
17-03-18 02:59:31.044 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:31.044 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 02:59:31.044 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28287, sync = True, waitForSettling = False)
17-03-18 02:59:31.044 -07 000000424 INF: Z Motor: Moving to -0.129490 mm, started at -0.129549 mm, distance = 0.06 um
17-03-18 02:59:31.044 -07 000000455 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-18 02:59:31.044 -07 000000424 INF: FPGA: Xmit ZDACW 28287\n [Z Motor]
17-03-18 02:59:31.044 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 02:59:31.054 -07 000000424 INF: FPGA: 'ZDACW 28287' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:59:31.054 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:31.054 -07 000000576 INF: FPGA: Recv ZDACR 28287
17-03-18 02:59:31.064 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:31.064 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:31.064 -07 000000424 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-18 02:59:31.064 -07 000000591 INF: FPGA: Recv YRDPOS 143081
17-03-18 02:59:31.074 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 02:59:31.074 -07 000000455 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:31.074 -07 000000455 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:31.074 -07 000000455 INF: Y Motor: Moving 1342 steps-19
17-03-18 02:59:31.074 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:31.224 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 02:59:31.224 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:59:31.224 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:31.234 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 384 ms.
17-03-18 02:59:31.234 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:59:31.234 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:31.234 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:31.234 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:59:31.234 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:59:31.234 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 02:59:31.444 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 02:59:31.444 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 02:59:31.494 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:31.504 -07 000000591 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:59:31.504 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 02:59:31.504 -07 000000455 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:31.504 -07 000000455 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:59:31.504 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.219 mm/sec
17-03-18 02:59:31.534 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:31.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:32.164 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.018051,
17-03-18 02:59:32.454 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:32.454 -07 000000591 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:59:32.464 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.464 -07 000000455 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:32.484 -07 000000455 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:32.484 -07 000000455 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:32.484 -07 000000455 INF: Y Motor: Moved to 70.6885 after 1445 ms (table move)
17-03-18 02:59:32.494 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129490 mm (DAC = 28287)
17-03-18 02:59:32.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.494 -07 000000606 INF: FPGA: Recv ZSGSRD 29438
17-03-18 02:59:32.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:59:32.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.504 -07 000000629 INF: FPGA: Recv ZSGSRD 29447
17-03-18 02:59:32.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.514 -07 000000626 INF: FPGA: Recv ZSGSRD 29454
17-03-18 02:59:32.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.524 -07 000000591 INF: FPGA: Recv ZSGSRD 29444
17-03-18 02:59:32.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.534 -07 000000561 INF: FPGA: Recv ZSGSRD 29451
17-03-18 02:59:32.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:32.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.544 -07 000000462 INF: FPGA: Recv ZSGSRD 29449
17-03-18 02:59:32.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.554 -07 000000579 INF: FPGA: Recv ZSGSRD 29442
17-03-18 02:59:32.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.564 -07 000000502 INF: FPGA: Recv ZSGSRD 29446
17-03-18 02:59:32.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.574 -07 000000569 INF: FPGA: Recv ZSGSRD 29448
17-03-18 02:59:32.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.584 -07 000000444 INF: FPGA: Recv ZSGSRD 29450
17-03-18 02:59:32.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.594 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:32.594 -07 000000512 INF: FPGA: Recv ZPIEZORD 24939
17-03-18 02:59:32.604 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.604 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.316 V. Piezo Error = -9.9 V.
17-03-18 02:59:32.604 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29447 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29448 (-128.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29438 (-128.7 uncal um), Max = 29454 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:59:32.604 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29447, posNoise = 7, negNoise = 9
17-03-18 02:59:32.604 -07 000000610 INF: Z Motor: After move to -0.129490, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:32.604 -07 000000610 INF: Z Motor: Settle wait time = 1447 ms, measure time = 109 ms (allowed 150 ms), total time = 1556 ms
17-03-18 02:59:32.604 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:32.654 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 02:59:32.654 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:32.654 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.12949712694957. ----------
17-03-18 02:59:32.654 -07 000000610 INF: Cycle	106	Tile	14	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:32.654 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28110, sync = True, waitForSettling = True)
17-03-18 02:59:32.654 -07 000000610 INF: Z Motor: Moving to -0.128679 mm, started at -0.129497 mm, distance = 0.82 um
17-03-18 02:59:32.654 -07 000000610 INF: FPGA: Xmit ZDACW 28110\n [Z Motor]
17-03-18 02:59:32.664 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 02:59:32.664 -07 000000610 INF: FPGA: 'ZDACW 28110' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 02:59:32.664 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:32.664 -07 000000626 INF: FPGA: Recv ZDACR 28110
17-03-18 02:59:32.674 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:32.674 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:32.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.824 -07 000000590 INF: FPGA: Recv ZSGSRD 29322
17-03-18 02:59:32.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:32.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.834 -07 000000444 INF: FPGA: Recv ZSGSRD 29317
17-03-18 02:59:32.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.844 -07 000000501 INF: FPGA: Recv ZSGSRD 29320
17-03-18 02:59:32.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.854 -07 000000561 INF: FPGA: Recv ZSGSRD 29315
17-03-18 02:59:32.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.864 -07 000000461 INF: FPGA: Recv ZSGSRD 29319
17-03-18 02:59:32.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.874 -07 000000606 INF: FPGA: Recv ZSGSRD 29327
17-03-18 02:59:32.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.884 -07 000000444 INF: FPGA: Recv ZSGSRD 29321
17-03-18 02:59:32.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29319
17-03-18 02:59:32.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.904 -07 000000576 INF: FPGA: Recv ZSGSRD 29321
17-03-18 02:59:32.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:32.914 -07 000000629 INF: FPGA: Recv ZSGSRD 29324
17-03-18 02:59:32.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.924 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:32.924 -07 000000590 INF: FPGA: Recv ZPIEZORD 24776
17-03-18 02:59:32.934 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:32.934 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -10.0 V.
17-03-18 02:59:32.934 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29320 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29320 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29315 (-127.9 uncal um), Max = 29327 (-128.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 02:59:32.934 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29320, posNoise = 7, negNoise = 5
17-03-18 02:59:32.934 -07 000000610 INF: Z Motor: After move to -0.128679, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:32.934 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 02:59:32.934 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:32.934 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:32.934 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:32.934 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:32.934 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:32.934 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:32.934 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:32.934 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:32.934 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 02:59:32.934 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:32.934 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:32.934 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:32.944 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:32.944 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:32.944 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:59:32.944 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:32.954 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 02:59:32.954 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 02:59:32.954 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 02:59:32.954 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 02:59:32.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28287 150\n [Camera]
17-03-18 02:59:33.164 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-18 02:59:33.564 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 02:59:33.564 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 02:59:33.564 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 02:59:33.564 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 02:59:33.564 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:33.564 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:33.564 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 02:59:33.564 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:33.564 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:33.564 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 02:59:33.754 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28287 785
17-03-18 02:59:33.904 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:33.954 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 02:59:33.954 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:59:33.954 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:59:33.954 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:59:33.954 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:33.954 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:33.954 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:33.954 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:59:33.954 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:59:33.964 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 02:59:34.094 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:34.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:34.094 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:34.094 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:34.094 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 02:59:34.094 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:34.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:34.094 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:34.094 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:34.094 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 02:59:34.284 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:59:34.284 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:34.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28287 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:59:34.284 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129337
17-03-18 02:59:34.414 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12934 mm
17-03-18 02:59:34.424 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:34.424 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28254, sync = True, waitForSettling = False)
17-03-18 02:59:34.424 -07 000000576 INF: Z Motor: Moving to -0.129339 mm, started at -0.128681 mm, distance = -0.66 um
17-03-18 02:59:34.424 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 02:59:34.424 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 02:59:34.424 -07 000000576 INF: FPGA: Xmit ZDACW 28254\n [Z Motor]
17-03-18 02:59:34.424 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:59:34.434 -07 000000576 INF: FPGA: 'ZDACW 28254' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 02:59:34.434 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:34.434 -07 000000424 INF: FPGA: Recv YRDPOS 144770
17-03-18 02:59:34.444 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:59:34.444 -07 000000462 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:34.444 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:34.444 -07 000000462 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:59:34.444 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:34.444 -07 000000626 INF: FPGA: Recv ZDACR 28254
17-03-18 02:59:34.454 -07 000000576 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:59:34.454 -07 000000576 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 02:59:34.454 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:34.484 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 392 ms.
17-03-18 02:59:34.484 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 02:59:34.484 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:34.494 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 391 ms.
17-03-18 02:59:34.494 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:59:34.494 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:34.494 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:34.494 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 02:59:34.494 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:34.504 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 02:59:34.824 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-18 02:59:34.824 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:59:34.874 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:34.874 -07 000000430 INF: FPGA: Recv YRDPOS 146470
17-03-18 02:59:34.884 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:34.884 -07 000000462 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:34.884 -07 000000462 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:59:34.884 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-18 02:59:35.834 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:35.834 -07 000000606 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:59:35.844 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:35.844 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:35.864 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:35.864 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 02:59:35.864 -07 000000462 INF: Y Motor: Moved to 71.5190 after 1445 ms (table move)
17-03-18 02:59:35.874 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129339 mm (DAC = 28254)
17-03-18 02:59:35.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.874 -07 000000467 INF: FPGA: Recv ZSGSRD 29419
17-03-18 02:59:35.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:35.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.884 -07 000000502 INF: FPGA: Recv ZSGSRD 29420
17-03-18 02:59:35.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.894 -07 000000569 INF: FPGA: Recv ZSGSRD 29419
17-03-18 02:59:35.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.904 -07 000000618 INF: FPGA: Recv ZSGSRD 29427
17-03-18 02:59:35.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.914 -07 000000576 INF: FPGA: Recv ZSGSRD 29430
17-03-18 02:59:35.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.924 -07 000000430 INF: FPGA: Recv ZSGSRD 29429
17-03-18 02:59:35.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.934 -07 000000579 INF: FPGA: Recv ZSGSRD 29427
17-03-18 02:59:35.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.944 -07 000000561 INF: FPGA: Recv ZSGSRD 29421
17-03-18 02:59:35.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.954 -07 000000424 INF: FPGA: Recv ZSGSRD 29421
17-03-18 02:59:35.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:35.964 -07 000000462 INF: FPGA: Recv ZSGSRD 29419
17-03-18 02:59:35.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.974 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:35.974 -07 000000591 INF: FPGA: Recv ZPIEZORD 24955
17-03-18 02:59:35.984 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:35.984 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.8 V.
17-03-18 02:59:35.984 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29423 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29421 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29419 (-128.5 uncal um), Max = 29430 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:59:35.984 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29423, posNoise = 7, negNoise = 4
17-03-18 02:59:35.984 -07 000000610 INF: Z Motor: After move to -0.129339, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:35.984 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 109 ms (allowed 150 ms), total time = 1557 ms
17-03-18 02:59:35.984 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:36.034 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 02:59:36.034 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:36.034 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.129342945858168. ----------
17-03-18 02:59:36.034 -07 000000610 INF: Cycle	106	Tile	15	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:36.034 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28077, sync = True, waitForSettling = True)
17-03-18 02:59:36.034 -07 000000610 INF: Z Motor: Moving to -0.128528 mm, started at -0.129343 mm, distance = 0.81 um
17-03-18 02:59:36.034 -07 000000610 INF: FPGA: Xmit ZDACW 28077\n [Z Motor]
17-03-18 02:59:36.034 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:59:36.044 -07 000000610 INF: FPGA: 'ZDACW 28077' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:36.044 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:36.044 -07 000000569 INF: FPGA: Recv ZDACR 28077
17-03-18 02:59:36.054 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.054 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:36.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.204 -07 000000467 INF: FPGA: Recv ZSGSRD 29293
17-03-18 02:59:36.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.214 -07 000000576 INF: FPGA: Recv ZSGSRD 29300
17-03-18 02:59:36.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.224 -07 000000591 INF: FPGA: Recv ZSGSRD 29303
17-03-18 02:59:36.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.234 -07 000000502 INF: FPGA: Recv ZSGSRD 29300
17-03-18 02:59:36.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.244 -07 000000561 INF: FPGA: Recv ZSGSRD 29297
17-03-18 02:59:36.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.254 -07 000000618 INF: FPGA: Recv ZSGSRD 29296
17-03-18 02:59:36.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.264 -07 000000455 INF: FPGA: Recv ZSGSRD 29295
17-03-18 02:59:36.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.274 -07 000000512 INF: FPGA: Recv ZSGSRD 29298
17-03-18 02:59:36.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.284 -07 000000606 INF: FPGA: Recv ZSGSRD 29294
17-03-18 02:59:36.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:36.294 -07 000000569 INF: FPGA: Recv ZSGSRD 29295
17-03-18 02:59:36.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.304 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:36.304 -07 000000430 INF: FPGA: Recv ZPIEZORD 24771
17-03-18 02:59:36.314 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:36.314 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.9 V.
17-03-18 02:59:36.314 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29297 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29296 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29293 (-127.7 uncal um), Max = 29303 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:59:36.314 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29297, posNoise = 6, negNoise = 4
17-03-18 02:59:36.314 -07 000000610 INF: Z Motor: After move to -0.128528, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:36.314 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 02:59:36.314 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:36.314 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:36.314 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:36.314 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:36.314 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:36.314 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:36.314 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:36.314 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:36.314 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:36.314 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:36.314 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:36.314 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:36.324 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:36.324 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:36.324 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:59:36.324 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:36.334 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-18 02:59:36.334 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:59:36.334 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-18 02:59:36.334 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 02:59:36.334 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28254 150\n [Camera]
17-03-18 02:59:36.534 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:36.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:36.534 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:36.934 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:36.934 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:36.944 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:36.944 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:36.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:36.944 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:36.944 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:36.944 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:59:36.954 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:36.954 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:59:37.134 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28254 785
17-03-18 02:59:37.284 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:37.314 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 364 ms.
17-03-18 02:59:37.314 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 364 ms.
17-03-18 02:59:37.314 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:37.324 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 02:59:37.324 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 02:59:37.324 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:37.324 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:37.324 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:37.324 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 02:59:37.324 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 02:59:37.474 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:37.474 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:37.474 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:37.474 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:37.474 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:37.474 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:37.474 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:37.474 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 02:59:37.484 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:37.484 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 02:59:37.524 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.026244,
17-03-18 02:59:37.664 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:59:37.664 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:37.664 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28254 150' command took 2 ms to send, 1316 ms to get response, and 1326 ms overall
17-03-18 02:59:37.664 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.128870
17-03-18 02:59:37.674 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12887 mm
17-03-18 02:59:37.674 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:37.674 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28152, sync = True, waitForSettling = False)
17-03-18 02:59:37.674 -07 000000618 INF: Z Motor: Moving to -0.128872 mm, started at -0.128533 mm, distance = -0.34 um
17-03-18 02:59:37.674 -07 000000618 INF: FPGA: Xmit ZDACW 28152\n [Z Motor]
17-03-18 02:59:37.674 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 02:59:37.674 -07 000000455 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 02:59:37.674 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:59:37.684 -07 000000618 INF: FPGA: 'ZDACW 28152' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:37.684 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:37.684 -07 000000467 INF: FPGA: Recv YRDPOS 146471
17-03-18 02:59:37.694 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 02:59:37.694 -07 000000455 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:37.694 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:37.694 -07 000000455 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:37.694 -07 000000455 INF: Y Motor: Moving 1350 steps-29
17-03-18 02:59:37.694 -07 000000430 INF: FPGA: Recv ZDACR 28152
17-03-18 02:59:37.704 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:37.704 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:59:37.704 -07 000000618 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-18 02:59:37.864 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:59:37.864 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 02:59:37.864 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:37.864 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:59:37.864 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 02:59:37.864 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:37.864 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:37.864 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 02:59:37.864 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 02:59:37.874 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 02:59:38.074 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 02:59:38.074 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:59:38.124 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:38.124 -07 000000561 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:59:38.134 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:38.134 -07 000000455 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:38.134 -07 000000455 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 02:59:38.134 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-18 02:59:39.084 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:39.084 -07 000000606 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:59:39.094 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:39.094 -07 000000455 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:39.114 -07 000000455 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:39.114 -07 000000455 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:39.114 -07 000000455 INF: Y Motor: Moved to 72.3496 after 1445 ms (table move)
17-03-18 02:59:39.124 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128872 mm (DAC = 28152)
17-03-18 02:59:39.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.124 -07 000000502 INF: FPGA: Recv ZSGSRD 29343
17-03-18 02:59:39.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:39.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.134 -07 000000591 INF: FPGA: Recv ZSGSRD 29345
17-03-18 02:59:39.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.144 -07 000000629 INF: FPGA: Recv ZSGSRD 29353
17-03-18 02:59:39.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.154 -07 000000444 INF: FPGA: Recv ZSGSRD 29353
17-03-18 02:59:39.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.164 -07 000000618 INF: FPGA: Recv ZSGSRD 29352
17-03-18 02:59:39.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.174 -07 000000502 INF: FPGA: Recv ZSGSRD 29358
17-03-18 02:59:39.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.184 -07 000000424 INF: FPGA: Recv ZSGSRD 29347
17-03-18 02:59:39.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.194 -07 000000430 INF: FPGA: Recv ZSGSRD 29346
17-03-18 02:59:39.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.204 -07 000000606 INF: FPGA: Recv ZSGSRD 29350
17-03-18 02:59:39.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.214 -07 000000462 INF: FPGA: Recv ZSGSRD 29358
17-03-18 02:59:39.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.224 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:39.224 -07 000000502 INF: FPGA: Recv ZPIEZORD 24865
17-03-18 02:59:39.234 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.234 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.8 V.
17-03-18 02:59:39.234 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29350 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29351 (-128.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29343 (-128.1 uncal um), Max = 29358 (-128.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:59:39.234 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29350, posNoise = 8, negNoise = 7
17-03-18 02:59:39.234 -07 000000610 INF: Z Motor: After move to -0.128872, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:39.234 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-18 02:59:39.234 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:39.274 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-18 02:59:39.274 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:39.274 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.128873978371819. ----------
17-03-18 02:59:39.274 -07 000000610 INF: Cycle	106	Tile	16	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:39.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27975, sync = True, waitForSettling = True)
17-03-18 02:59:39.274 -07 000000610 INF: Z Motor: Moving to -0.128061 mm, started at -0.128874 mm, distance = 0.81 um
17-03-18 02:59:39.274 -07 000000610 INF: FPGA: Xmit ZDACW 27975\n [Z Motor]
17-03-18 02:59:39.274 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 02:59:39.284 -07 000000610 INF: FPGA: 'ZDACW 27975' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 02:59:39.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:39.284 -07 000000501 INF: FPGA: Recv ZDACR 27975
17-03-18 02:59:39.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:39.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.444 -07 000000561 INF: FPGA: Recv ZSGSRD 29219
17-03-18 02:59:39.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:39.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.454 -07 000000618 INF: FPGA: Recv ZSGSRD 29227
17-03-18 02:59:39.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.464 -07 000000569 INF: FPGA: Recv ZSGSRD 29227
17-03-18 02:59:39.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.474 -07 000000606 INF: FPGA: Recv ZSGSRD 29227
17-03-18 02:59:39.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.484 -07 000000629 INF: FPGA: Recv ZSGSRD 29228
17-03-18 02:59:39.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.494 -07 000000444 INF: FPGA: Recv ZSGSRD 29218
17-03-18 02:59:39.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.504 -07 000000424 INF: FPGA: Recv ZSGSRD 29228
17-03-18 02:59:39.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.514 -07 000000502 INF: FPGA: Recv ZSGSRD 29225
17-03-18 02:59:39.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.524 -07 000000579 INF: FPGA: Recv ZSGSRD 29222
17-03-18 02:59:39.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:39.534 -07 000000576 INF: FPGA: Recv ZSGSRD 29223
17-03-18 02:59:39.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:39.544 -07 000000461 INF: FPGA: Recv ZPIEZORD 24665
17-03-18 02:59:39.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:39.554 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -10.0 V.
17-03-18 02:59:39.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29224 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29226 (-127.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29218 (-127.3 uncal um), Max = 29228 (-127.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:39.554 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29224, posNoise = 4, negNoise = 6
17-03-18 02:59:39.554 -07 000000610 INF: Z Motor: After move to -0.128061, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:39.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:59:39.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:39.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:39.554 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:39.554 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:39.554 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:39.554 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:39.554 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:39.554 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:39.554 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:39.554 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:39.554 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:39.554 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:39.564 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 02:59:39.564 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:39.564 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:39.564 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:39.574 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:59:39.574 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:39.574 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:59:39.574 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:39.584 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28152 150\n [Camera]
17-03-18 02:59:39.784 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:40.184 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:40.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:40.184 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:40.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:40.184 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:40.184 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:40.184 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:40.184 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 02:59:40.184 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:40.184 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:59:40.374 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28152 785
17-03-18 02:59:40.524 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:40.564 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:59:40.564 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:59:40.564 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:40.564 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:59:40.564 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:59:40.564 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:40.564 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:40.564 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:40.564 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:59:40.574 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:59:40.714 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:40.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:40.714 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:40.844 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:40.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:40.844 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:40.844 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:40.844 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:59:40.844 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:40.844 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 02:59:40.904 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:59:40.904 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:40.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28152 150' command took 2 ms to send, 1317 ms to get response, and 1326 ms overall
17-03-18 02:59:40.914 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 02:59:40.914 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128064527641957. ------
17-03-18 02:59:40.914 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:59:40.914 -07 000000467 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13463 mm
17-03-18 02:59:40.914 -07 000000467 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:40.914 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:59:40.924 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:40.924 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 02:59:40.924 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 02:59:40.924 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 02:59:40.924 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29409, sync = True, waitForSettling = False)
17-03-18 02:59:40.924 -07 000000424 INF: Z Motor: Moving to -0.134626 mm, started at -0.128065 mm, distance = -6.56 um
17-03-18 02:59:40.934 -07 000000424 INF: FPGA: Xmit ZDACW 29409\n [Z Motor]
17-03-18 02:59:40.934 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 02:59:40.944 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:40.944 -07 000000424 INF: FPGA: 'ZDACW 29409' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 02:59:40.944 -07 000000629 INF: FPGA: Recv YRDPOS 148172
17-03-18 02:59:40.954 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 02:59:40.954 -07 000000502 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:40.954 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:40.954 -07 000000502 INF: Y Motor: Moving 1349 steps-27
17-03-18 02:59:40.954 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:40.954 -07 000000430 INF: FPGA: Recv ZDACR 29409
17-03-18 02:59:40.964 -07 000000424 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 02:59:40.964 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:40.964 -07 000000424 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-18 02:59:41.124 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-18 02:59:41.124 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:59:41.224 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:59:41.224 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:59:41.224 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:41.224 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 02:59:41.224 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 02:59:41.224 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:41.224 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:41.234 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:41.234 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 02:59:41.234 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 02:59:41.334 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 02:59:41.334 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 02:59:41.384 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:41.384 -07 000000590 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:59:41.394 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:41.394 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:41.394 -07 000000502 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 02:59:41.394 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-18 02:59:41.534 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:41.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:42.344 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:42.344 -07 000000606 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:59:42.354 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.354 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:42.384 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:42.384 -07 000000502 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:42.384 -07 000000502 INF: Y Motor: Moved to 73.1763 after 1458 ms (table move)
17-03-18 02:59:42.384 -07 000000467 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134626 mm (DAC = 29409)
17-03-18 02:59:42.394 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.394 -07 000000502 INF: FPGA: Recv ZSGSRD 30245
17-03-18 02:59:42.404 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 02:59:42.404 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.404 -07 000000629 INF: FPGA: Recv ZSGSRD 30243
17-03-18 02:59:42.414 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.414 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.414 -07 000000618 INF: FPGA: Recv ZSGSRD 30252
17-03-18 02:59:42.424 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.424 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.424 -07 000000512 INF: FPGA: Recv ZSGSRD 30245
17-03-18 02:59:42.434 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.434 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.434 -07 000000591 INF: FPGA: Recv ZSGSRD 30239
17-03-18 02:59:42.444 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.444 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.444 -07 000000424 INF: FPGA: Recv ZSGSRD 30250
17-03-18 02:59:42.454 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.454 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.454 -07 000000444 INF: FPGA: Recv ZSGSRD 30236
17-03-18 02:59:42.464 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.464 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.464 -07 000000618 INF: FPGA: Recv ZSGSRD 30243
17-03-18 02:59:42.474 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.474 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.474 -07 000000462 INF: FPGA: Recv ZSGSRD 30243
17-03-18 02:59:42.484 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.484 -07 000000467 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:42.484 -07 000000569 INF: FPGA: Recv ZSGSRD 30244
17-03-18 02:59:42.494 -07 000000467 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.494 -07 000000467 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:42.494 -07 000000626 INF: FPGA: Recv ZPIEZORD 26002
17-03-18 02:59:42.504 -07 000000467 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:42.504 -07 000000467 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.488 V. Piezo Error = -9.3 V.
17-03-18 02:59:42.504 -07 000000467 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30244 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30244 (-133.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30236 (-133.8 uncal um), Max = 30252 (-133.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 02:59:42.504 -07 000000467 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30244, posNoise = 8, negNoise = 8
17-03-18 02:59:42.504 -07 000000467 INF: Z Motor: After move to -0.134626, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:42.504 -07 000000467 INF: Z Motor: Settle wait time = 1461 ms, measure time = 118 ms (allowed 150 ms), total time = 1579 ms
17-03-18 02:59:42.504 -07 000000467 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:42.544 -07 000000467 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 02:59:42.544 -07 000000467 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:42.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:42.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:42.544 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:42.544 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:42.544 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 02:59:42.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:42.544 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:42.544 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 02:59:42.554 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 02:59:42.554 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 02:59:42.564 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 02:59:42.564 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-18 02:59:42.574 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 02:59:42.614 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 02:59:42.884 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.018051,
17-03-18 02:59:42.914 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 02:59:42.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 02:59:42.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 02:59:42.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-18 02:59:42.954 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 02:59:42.954 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 02:59:42.954 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 388 ms overall
17-03-18 02:59:43.044 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 02:59:43.044 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:43.044 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 02:59:43.044 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 02:59:43.054 -07 000000579 INF: Autofocus start
17-03-18 02:59:43.054 -07 000000579 INF: MeasureProfile start
17-03-18 02:59:43.054 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 02:59:43.054 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 02:59:43.064 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 02:59:43.064 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 02:59:43.064 -07 000000579 INF: MeasureProfile done
17-03-18 02:59:43.064 -07 000000579 INF: X=0  Z correction [um]=-0.02394831
17-03-18 02:59:43.064 -07 000000579 INF: Autofocus finished
17-03-18 02:59:43.264 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 02:59:43.264 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 02:59:43.264 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134617224026553. ----------
17-03-18 02:59:43.264 -07 000000610 INF: Cycle	106	Tile	17	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:43.274 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27916, sync = True, waitForSettling = True)
17-03-18 02:59:43.274 -07 000000610 INF: Z Motor: Moving to -0.127791 mm, started at -0.134617 mm, distance = 6.83 um
17-03-18 02:59:43.274 -07 000000610 INF: FPGA: Xmit ZDACW 27916\n [Z Motor]
17-03-18 02:59:43.274 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 02:59:43.284 -07 000000610 INF: FPGA: 'ZDACW 27916' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.284 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:43.284 -07 000000462 INF: FPGA: Recv ZDACR 27916
17-03-18 02:59:43.294 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.294 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:43.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.444 -07 000000502 INF: FPGA: Recv ZSGSRD 29182
17-03-18 02:59:43.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:43.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.454 -07 000000629 INF: FPGA: Recv ZSGSRD 29186
17-03-18 02:59:43.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.464 -07 000000424 INF: FPGA: Recv ZSGSRD 29185
17-03-18 02:59:43.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.474 -07 000000444 INF: FPGA: Recv ZSGSRD 29179
17-03-18 02:59:43.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.484 -07 000000576 INF: FPGA: Recv ZSGSRD 29181
17-03-18 02:59:43.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.494 -07 000000569 INF: FPGA: Recv ZSGSRD 29186
17-03-18 02:59:43.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.504 -07 000000561 INF: FPGA: Recv ZSGSRD 29186
17-03-18 02:59:43.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.514 -07 000000424 INF: FPGA: Recv ZSGSRD 29178
17-03-18 02:59:43.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.524 -07 000000579 INF: FPGA: Recv ZSGSRD 29179
17-03-18 02:59:43.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:43.534 -07 000000462 INF: FPGA: Recv ZSGSRD 29180
17-03-18 02:59:43.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.544 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:43.544 -07 000000502 INF: FPGA: Recv ZPIEZORD 24649
17-03-18 02:59:43.554 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:43.554 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.260 V. Piezo Error = -9.9 V.
17-03-18 02:59:43.554 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.8 um, Read 10 ADC samples: Avg = 29182 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29182 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29178 (-127.0 uncal um), Max = 29186 (-127.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 02:59:43.554 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29182, posNoise = 4, negNoise = 4
17-03-18 02:59:43.554 -07 000000610 INF: Z Motor: After move to -0.127791, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:43.554 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 02:59:43.554 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:43.554 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:43.554 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:43.554 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:43.554 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:43.554 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:43.554 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:43.554 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:43.554 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 02:59:43.554 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:43.554 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 02:59:43.554 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:43.564 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:59:43.564 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:43.564 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:43.564 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:43.574 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 02:59:43.574 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:43.574 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 02:59:43.574 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:59:43.574 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 28093 150\n [Camera]
17-03-18 02:59:43.774 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:44.174 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:44.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:44.174 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:44.174 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:44.174 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-18 02:59:44.184 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:44.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:44.184 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:44.184 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:44.184 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-18 02:59:44.374 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28093 785
17-03-18 02:59:44.524 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:44.554 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 02:59:44.554 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 02:59:44.554 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:44.554 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 02:59:44.554 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 02:59:44.554 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:44.564 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:44.564 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:59:44.564 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:44.564 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:59:44.714 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:44.714 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:44.714 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:44.834 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:44.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:44.834 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:44.834 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:44.834 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 02:59:44.834 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:44.834 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 02:59:44.904 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1319
17-03-18 02:59:44.904 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:44.904 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 28093 150' command took 2 ms to send, 1314 ms to get response, and 1326 ms overall
17-03-18 02:59:44.904 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128147
17-03-18 02:59:44.904 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12815 mm
17-03-18 02:59:44.904 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:44.914 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 27994, sync = True, waitForSettling = False)
17-03-18 02:59:44.914 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 02:59:44.914 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 02:59:44.914 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:44.914 -07 000000569 INF: Z Motor: Moving to -0.128148 mm, started at -0.127795 mm, distance = -0.35 um
17-03-18 02:59:44.914 -07 000000579 INF: FPGA: Recv YRDPOS 149865
17-03-18 02:59:44.924 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:44.924 -07 000000569 INF: FPGA: Xmit ZDACW 27994\n [Z Motor]
17-03-18 02:59:44.924 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:44.924 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:44.924 -07 000000618 INF: Y Motor: Moving 1354 steps-33
17-03-18 02:59:44.924 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 02:59:44.934 -07 000000569 INF: FPGA: 'ZDACW 27994' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 02:59:44.934 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:44.934 -07 000000606 INF: FPGA: Recv ZDACR 27994
17-03-18 02:59:44.944 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:44.944 -07 000000569 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 02:59:44.944 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:45.214 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 02:59:45.214 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 02:59:45.214 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:45.214 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:45.224 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 02:59:45.224 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:59:45.224 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:45.224 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 02:59:45.234 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 02:59:45.234 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-18 02:59:45.314 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 02:59:45.314 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 398 ms overall
17-03-18 02:59:45.354 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:45.364 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:59:45.364 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-18 02:59:45.364 -07 000000618 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:45.364 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 02:59:45.364 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-18 02:59:46.314 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:46.314 -07 000000455 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:59:46.324 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:46.324 -07 000000618 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:46.344 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:46.344 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:46.344 -07 000000618 INF: Y Motor: Moved to 74.0083 after 1433 ms (table move)
17-03-18 02:59:46.344 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128148 mm (DAC = 27994)
17-03-18 02:59:46.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.344 -07 000000629 INF: FPGA: Recv ZSGSRD 29236
17-03-18 02:59:46.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:59:46.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.354 -07 000000579 INF: FPGA: Recv ZSGSRD 29236
17-03-18 02:59:46.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.364 -07 000000467 INF: FPGA: Recv ZSGSRD 29238
17-03-18 02:59:46.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.374 -07 000000462 INF: FPGA: Recv ZSGSRD 29239
17-03-18 02:59:46.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.384 -07 000000444 INF: FPGA: Recv ZSGSRD 29240
17-03-18 02:59:46.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.394 -07 000000606 INF: FPGA: Recv ZSGSRD 29242
17-03-18 02:59:46.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.404 -07 000000461 INF: FPGA: Recv ZSGSRD 29238
17-03-18 02:59:46.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.414 -07 000000626 INF: FPGA: Recv ZSGSRD 29237
17-03-18 02:59:46.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.424 -07 000000501 INF: FPGA: Recv ZSGSRD 29239
17-03-18 02:59:46.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.434 -07 000000579 INF: FPGA: Recv ZSGSRD 29240
17-03-18 02:59:46.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:46.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:46.444 -07 000000569 INF: FPGA: Recv ZPIEZORD 24742
17-03-18 02:59:46.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.454 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.272 V. Piezo Error = -9.9 V.
17-03-18 02:59:46.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29238 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29238 (-127.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29236 (-127.4 uncal um), Max = 29242 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-18 02:59:46.454 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29238, posNoise = 4, negNoise = 2
17-03-18 02:59:46.454 -07 000000610 INF: Z Motor: After move to -0.128148, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:46.454 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-18 02:59:46.454 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:46.504 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-18 02:59:46.504 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:46.504 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.128154466611942. ----------
17-03-18 02:59:46.504 -07 000000610 INF: Cycle	106	Tile	18	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:46.504 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27817, sync = True, waitForSettling = True)
17-03-18 02:59:46.504 -07 000000610 INF: Z Motor: Moving to -0.127338 mm, started at -0.128154 mm, distance = 0.82 um
17-03-18 02:59:46.504 -07 000000610 INF: FPGA: Xmit ZDACW 27817\n [Z Motor]
17-03-18 02:59:46.504 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 02:59:46.514 -07 000000610 INF: FPGA: 'ZDACW 27817' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:59:46.514 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:46.514 -07 000000512 INF: FPGA: Recv ZDACR 27817
17-03-18 02:59:46.524 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.524 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:46.534 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:46.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:46.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.674 -07 000000591 INF: FPGA: Recv ZSGSRD 29108
17-03-18 02:59:46.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:46.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.684 -07 000000618 INF: FPGA: Recv ZSGSRD 29121
17-03-18 02:59:46.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.694 -07 000000606 INF: FPGA: Recv ZSGSRD 29108
17-03-18 02:59:46.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.704 -07 000000461 INF: FPGA: Recv ZSGSRD 29116
17-03-18 02:59:46.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.714 -07 000000430 INF: FPGA: Recv ZSGSRD 29108
17-03-18 02:59:46.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.724 -07 000000579 INF: FPGA: Recv ZSGSRD 29120
17-03-18 02:59:46.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.734 -07 000000569 INF: FPGA: Recv ZSGSRD 29117
17-03-18 02:59:46.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.744 -07 000000501 INF: FPGA: Recv ZSGSRD 29106
17-03-18 02:59:46.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.754 -07 000000561 INF: FPGA: Recv ZSGSRD 29116
17-03-18 02:59:46.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:46.764 -07 000000629 INF: FPGA: Recv ZSGSRD 29112
17-03-18 02:59:46.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.774 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:46.774 -07 000000590 INF: FPGA: Recv ZPIEZORD 24615
17-03-18 02:59:46.784 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:46.784 -07 000000610 INF: Z Motor: Piezo is near 32.6 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.245 V. Piezo Error = -9.9 V.
17-03-18 02:59:46.784 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29113 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29114 (-126.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29106 (-126.5 uncal um), Max = 29121 (-126.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 02:59:46.784 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29113, posNoise = 8, negNoise = 7
17-03-18 02:59:46.784 -07 000000610 INF: Z Motor: After move to -0.127338, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:46.784 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 02:59:46.784 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:46.784 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:46.784 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:46.784 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:46.784 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:46.784 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:46.784 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:46.784 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:46.784 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 02:59:46.794 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:46.794 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:46.794 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:46.794 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 02:59:46.794 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:46.794 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:46.794 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:46.804 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 02:59:46.804 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 02:59:46.804 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 02:59:46.804 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 02:59:46.804 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 27994 150\n [Camera]
17-03-18 02:59:47.004 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:47.404 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:47.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:47.404 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:47.404 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:47.414 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start.
17-03-18 02:59:47.414 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:47.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:47.414 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:47.414 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:47.414 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start.
17-03-18 02:59:47.604 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27994 785
17-03-18 02:59:47.754 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:47.784 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 02:59:47.784 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 02:59:47.784 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:47.784 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 02:59:47.784 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 02:59:47.784 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:47.794 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:47.794 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 02:59:47.794 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 02:59:47.804 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 02:59:47.944 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:47.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:47.944 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:47.944 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:47.944 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 02:59:47.944 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:47.944 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:47.944 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:48.084 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:48.084 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 02:59:48.134 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:59:48.134 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:48.134 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 27994 150' command took 2 ms to send, 1317 ms to get response, and 1329 ms overall
17-03-18 02:59:48.144 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127345
17-03-18 02:59:48.144 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12734 mm
17-03-18 02:59:48.144 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 02:59:48.144 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 27818, sync = True, waitForSettling = False)
17-03-18 02:59:48.144 -07 000000512 INF: Z Motor: Moving to -0.127343 mm, started at -0.127351 mm, distance = 0.01 um
17-03-18 02:59:48.144 -07 000000512 INF: FPGA: Xmit ZDACW 27818\n [Z Motor]
17-03-18 02:59:48.144 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 02:59:48.144 -07 000000561 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 02:59:48.144 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 02:59:48.154 -07 000000512 INF: FPGA: 'ZDACW 27818' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:59:48.154 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:48.154 -07 000000455 INF: FPGA: Recv ZDACR 27818
17-03-18 02:59:48.164 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:48.164 -07 000000512 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-18 02:59:48.164 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:48.164 -07 000000606 INF: FPGA: Recv YRDPOS 151569
17-03-18 02:59:48.174 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 02:59:48.174 -07 000000561 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:48.174 -07 000000561 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 02:59:48.174 -07 000000561 INF: Y Motor: Moving 1351 steps-29
17-03-18 02:59:48.174 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 02:59:48.244 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.001704,
17-03-18 02:59:48.334 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 02:59:48.334 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 02:59:48.334 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:48.334 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:48.334 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 02:59:48.454 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 02:59:48.454 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 02:59:48.454 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:48.464 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:48.464 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-18 02:59:48.544 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 02:59:48.544 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-18 02:59:48.584 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:48.594 -07 000000606 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:59:48.594 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:48.594 -07 000000561 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:48.594 -07 000000561 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-18 02:59:48.594 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.234 mm/sec
17-03-18 02:59:49.544 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 02:59:49.544 -07 000000512 INF: FPGA: Recv YRDPOS 153256
17-03-18 02:59:49.554 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:49.554 -07 000000561 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 02:59:49.564 -07 000000561 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 02:59:49.564 -07 000000561 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 02:59:49.564 -07 000000561 INF: Y Motor: Moved to 74.8320 after 1422 ms (table move)
17-03-18 02:59:49.574 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127343 mm (DAC = 27818)
17-03-18 02:59:49.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.574 -07 000000606 INF: FPGA: Recv ZSGSRD 29115
17-03-18 02:59:49.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:49.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.584 -07 000000629 INF: FPGA: Recv ZSGSRD 29103
17-03-18 02:59:49.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.594 -07 000000576 INF: FPGA: Recv ZSGSRD 29116
17-03-18 02:59:49.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.604 -07 000000626 INF: FPGA: Recv ZSGSRD 29117
17-03-18 02:59:49.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.614 -07 000000424 INF: FPGA: Recv ZSGSRD 29114
17-03-18 02:59:49.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.624 -07 000000467 INF: FPGA: Recv ZSGSRD 29117
17-03-18 02:59:49.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:49.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.634 -07 000000626 INF: FPGA: Recv ZSGSRD 29109
17-03-18 02:59:49.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.644 -07 000000629 INF: FPGA: Recv ZSGSRD 29113
17-03-18 02:59:49.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.654 -07 000000606 INF: FPGA: Recv ZSGSRD 29110
17-03-18 02:59:49.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.664 -07 000000591 INF: FPGA: Recv ZSGSRD 29107
17-03-18 02:59:49.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:49.674 -07 000000579 INF: FPGA: Recv ZPIEZORD 24597
17-03-18 02:59:49.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.684 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.245 V. Piezo Error = -9.9 V.
17-03-18 02:59:49.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.3 um, Read 10 ADC samples: Avg = 29112 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29114 (-126.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29103 (-126.5 uncal um), Max = 29117 (-126.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 02:59:49.684 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29112, posNoise = 5, negNoise = 9
17-03-18 02:59:49.684 -07 000000610 INF: Z Motor: After move to -0.127343, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:49.684 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 109 ms (allowed 150 ms), total time = 1535 ms
17-03-18 02:59:49.684 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 02:59:49.734 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-18 02:59:49.734 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 02:59:49.734 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.12734501588208. ----------
17-03-18 02:59:49.734 -07 000000610 INF: Cycle	106	Tile	19	Exposure Settings		A	400	G	192	T	192	C	400
17-03-18 02:59:49.734 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27642, sync = True, waitForSettling = True)
17-03-18 02:59:49.734 -07 000000610 INF: Z Motor: Moving to -0.126537 mm, started at -0.127345 mm, distance = 0.81 um
17-03-18 02:59:49.734 -07 000000610 INF: FPGA: Xmit ZDACW 27642\n [Z Motor]
17-03-18 02:59:49.734 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 02:59:49.744 -07 000000610 INF: FPGA: 'ZDACW 27642' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 02:59:49.744 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 02:59:49.744 -07 000000467 INF: FPGA: Recv ZDACR 27642
17-03-18 02:59:49.754 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.754 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 02:59:49.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.904 -07 000000626 INF: FPGA: Recv ZSGSRD 28988
17-03-18 02:59:49.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 02:59:49.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.914 -07 000000502 INF: FPGA: Recv ZSGSRD 28985
17-03-18 02:59:49.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.924 -07 000000461 INF: FPGA: Recv ZSGSRD 28992
17-03-18 02:59:49.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.934 -07 000000424 INF: FPGA: Recv ZSGSRD 28993
17-03-18 02:59:49.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.944 -07 000000462 INF: FPGA: Recv ZSGSRD 28984
17-03-18 02:59:49.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.954 -07 000000618 INF: FPGA: Recv ZSGSRD 28989
17-03-18 02:59:49.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.964 -07 000000502 INF: FPGA: Recv ZSGSRD 28987
17-03-18 02:59:49.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.974 -07 000000455 INF: FPGA: Recv ZSGSRD 28989
17-03-18 02:59:49.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:49.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.984 -07 000000618 INF: FPGA: Recv ZSGSRD 28985
17-03-18 02:59:49.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 02:59:49.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 02:59:49.994 -07 000000591 INF: FPGA: Recv ZSGSRD 28981
17-03-18 02:59:50.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:50.004 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 02:59:50.004 -07 000000467 INF: FPGA: Recv ZPIEZORD 24465
17-03-18 02:59:50.014 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 02:59:50.014 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -9.9 V.
17-03-18 02:59:50.014 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28987 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28988 (-125.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 28981 (-125.7 uncal um), Max = 28993 (-125.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 02:59:50.014 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28987, posNoise = 6, negNoise = 6
17-03-18 02:59:50.014 -07 000000610 INF: Z Motor: After move to -0.126537, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 02:59:50.014 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 02:59:50.014 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 02:59:50.014 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 02:59:50.014 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 02:59:50.014 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 02:59:50.014 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 02:59:50.014 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 02:59:50.014 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 02:59:50.014 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 02:59:50.014 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 02:59:50.014 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 02:59:50.014 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 02:59:50.014 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 02:59:50.024 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 02:59:50.024 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 02:59:50.024 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 02:59:50.024 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 02:59:50.034 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 02:59:50.034 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 02:59:50.034 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 02:59:50.034 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 02:59:50.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 400 400 192 192 27818 150\n [Camera]
17-03-18 02:59:50.244 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 02:59:50.644 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 592
17-03-18 02:59:50.644 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 592
17-03-18 02:59:50.644 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:50.644 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 592
17-03-18 02:59:50.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 592
17-03-18 02:59:50.644 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:50.644 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:50.644 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start.
17-03-18 02:59:50.644 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:50.644 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 02:59:50.834 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27818 785
17-03-18 02:59:50.984 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 935
17-03-18 02:59:51.024 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 383 ms.
17-03-18 02:59:51.024 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 02:59:51.024 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:51.034 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 02:59:51.034 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 02:59:51.034 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:51.034 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:51.034 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 02:59:51.034 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 02:59:51.044 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 02:59:51.174 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1127
17-03-18 02:59:51.174 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1127
17-03-18 02:59:51.174 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 02:59:51.174 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 02:59:51.174 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) start.
17-03-18 02:59:51.174 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1127
17-03-18 02:59:51.174 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1127
17-03-18 02:59:51.184 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 02:59:51.184 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 02:59:51.184 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 02:59:51.364 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1320
17-03-18 02:59:51.364 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 02:59:51.364 -07 000000610 INF: FPGA: 'CAMDBLSNAP 400 400 192 192 27818 150' command took 2 ms to send, 1318 ms to get response, and 1326 ms overall
17-03-18 02:59:51.534 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 02:59:51.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 105. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1570, R2=1634, Total=3204. Warn if over 250 bubbles per interval.
17-03-18 02:59:51.554 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1165594328, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 02:59:51.554 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 02:59:51.554 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:51.564 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 02:59:51.564 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 02:59:51.564 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 02:59:51.564 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:51.564 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 02:59:51.564 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 02:59:51.564 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 02:59:51.574 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 02:59:51.604 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 02:59:51.604 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 02:59:51.644 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 02:59:51.664 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 02:59:51.664 -07 000000610 INF: Imaging Cycle 106: ScanTilesCommand Cycle 106 time end. Duration was 139762 ms.
17-03-18 02:59:51.664 -07 000000610 INF: =================== Cycle #106 ===================
17-03-18 02:59:51.664 -07 000000610 INF: ===================  ===================
17-03-18 02:59:51.664 -07 000000606 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 02:59:51.674 -07 000000455 INF: FPGA: Recv EXLED1ADCR 27
17-03-18 02:59:51.674 -07 000000606 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 02:59:51.674 -07 000000606 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW
17-03-18 02:59:51.674 -07 000000606 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 106, FrontChillerTemperature: 4.001704, FrontChillerHeatSinkTemperature: 0.25998, AmbientTemperature: 18.65986, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.52444, GreenLEDSensorTemperature: 25.146, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235
17-03-18 02:59:51.774 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.