17-03-18 03:04:22.084 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:04:22.084 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-18 03:04:22.084 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-18 03:04:22.084 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:04:22.084 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:04:22.094 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:04:22.094 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:04:22.094 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-18 03:04:22.094 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-18 03:04:22.094 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-18 03:04:22.214 -07 000000629 INF: FPGA: Recv YMVTO 154378 878
17-03-18 03:04:22.214 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 112 ms to get response, and 121 ms overall
17-03-18 03:04:22.214 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-18 03:04:22.214 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-18 03:04:22.214 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 122 ms, distance = 0.549 mm, average velocity = 4.496 mm/sec
17-03-18 03:04:25.214 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:04:25.214 -07 000000502 INF: FPGA: Recv YRDPOS 154387
17-03-18 03:04:25.224 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:04:25.224 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:04:25.264 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:04:25.264 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm)
17-03-18 03:04:25.264 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3181 ms
17-03-18 03:04:25.274 -07 000000610 INF: =================== Cycle #108, Flow Cell Temp 60° ===================
17-03-18 03:04:25.274 -07 000000610 INF: =================== Cycle #108, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-18 03:04:25.274 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-18 03:04:25.274 -07 000000512 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:04:25.284 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:04:25.284 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:04:25.284 -07 000000424 INF: FPGA: Recv TEC2EN 
17-03-18 03:04:25.294 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:04:25.294 -07 000000610 INF: =================== Cycle #108, Flow Cell Temp 60° ===================
17-03-18 03:04:25.294 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:04:25.294 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:04:25.294 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:04:25.324 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:04:25.324 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-18 03:04:25.324 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:04:25.624 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:04:25.644 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:04:25.644 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:04:25.694 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:04:25.714 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:04:25.714 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:04:25.814 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:04:25.814 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:04:25.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:25.844 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:04:25.844 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:04:25.844 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:04:25.974 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:04:26.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:26.534 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:04:26.534 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1578, R2=1643, Total=3221. Warn if over 250 bubbles per interval.
17-03-18 03:04:27.224 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.004458,
17-03-18 03:04:29.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:29.174 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:29.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:29.624 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:30.044 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:30.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:30.074 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 03:04:30.074 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:04:30.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:30.234 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:04:30.234 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:04:30.364 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:30.394 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:04:30.394 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:04:30.394 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:04:30.524 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:04:30.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:30.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:31.014 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:31.014 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:04:31.014 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:04:31.534 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 5
17-03-18 03:04:31.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=5, R2=6, Total=11. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1583, R2=1649, Total=3232. Warn if over 250 bubbles per interval.
17-03-18 03:04:32.234 -07 000000610 INF: AsyncDelayTimer waited 1209ms
17-03-18 03:04:32.234 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-18 03:04:32.234 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:04:32.254 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:04:32.254 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-18 03:04:32.254 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-18 03:04:32.384 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:04:32.404 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-18 03:04:32.404 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-18 03:04:32.454 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:04:32.474 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:04:32.474 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:04:32.574 -07 000000610 INF: =================== Cycle #108, Pumping Reagent CMS (4) ===================
17-03-18 03:04:32.574 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:04:32.574 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:32.584 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.026244,
17-03-18 03:04:32.604 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:04:32.604 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:04:32.604 -07 000000610 INF: =================== Cycle #108, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-18 03:04:32.734 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:04:32.774 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:34.214 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:34.244 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:34.664 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:34.694 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:34.694 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:04:34.694 -07 000000610 INF: =================== Cycle #108, Pumping Reagent CMS (4) ===================
17-03-18 03:04:34.824 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:34.854 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:04:34.854 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:04:34.984 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:35.014 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:04:35.014 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:04:35.014 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:04:35.144 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:04:35.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:35.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:35.634 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:35.634 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:04:35.634 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:04:36.534 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-18 03:04:36.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1585, R2=1652, Total=3237. Warn if over 250 bubbles per interval.
17-03-18 03:04:36.854 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 03:04:36.854 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:04:36.854 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:04:36.874 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-18 03:04:36.874 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-18 03:04:36.874 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-18 03:04:37.024 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:04:37.044 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-18 03:04:37.044 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-18 03:04:37.094 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:04:37.114 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:04:37.114 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:04:37.214 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:04:37.214 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:04:37.214 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:37.244 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:04:37.244 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:04:37.244 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:04:37.374 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:04:37.414 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:37.944 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.011254,
17-03-18 03:04:38.284 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:38.314 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:38.314 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:04:38.314 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:04:38.444 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:38.474 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:04:38.474 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:04:38.604 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:38.634 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:04:38.634 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:04:38.634 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:04:38.764 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:04:38.794 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:39.224 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:39.254 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:39.254 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:04:39.254 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:04:39.254 -07 000000461 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:04:39.254 -07 000000569 INF: WaitCommand(10000) start
17-03-18 03:04:39.254 -07 000000461 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:04:40.474 -07 000000461 INF: AsyncDelayTimer waited 1215ms
17-03-18 03:04:40.474 -07 000000461 INF: LanePump: Xmit /1?\r
17-03-18 03:04:40.504 -07 000000461 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:04:40.504 -07 000000461 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:04:40.634 -07 000000461 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:04:40.674 -07 000000461 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:41.534 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:04:41.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1585, R2=1652, Total=3237. Warn if over 250 bubbles per interval.
17-03-18 03:04:42.204 -07 000000461 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:42.234 -07 000000461 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:42.654 -07 000000461 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:42.684 -07 000000461 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:42.684 -07 000000461 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-18 03:04:42.684 -07 000000461 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:04:42.684 -07 000000461 INF: ===================  ===================
17-03-18 03:04:43.304 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.000345,
17-03-18 03:04:46.534 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:04:46.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1585, R2=1652, Total=3237. Warn if over 250 bubbles per interval.
17-03-18 03:04:48.664 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.981281,
17-03-18 03:04:49.264 -07 000000569 INF: WaitCommand(10000) end
17-03-18 03:04:49.264 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:04:49.264 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-18 03:04:49.264 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:49.304 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:04:49.304 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:04:49.304 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:04:49.434 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-18 03:04:49.474 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:51.544 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:04:51.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1585, R2=1652, Total=3237. Warn if over 250 bubbles per interval.
17-03-18 03:04:54.024 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.993549,
17-03-18 03:04:55.604 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:55.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:56.054 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:56.084 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:56.504 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:56.534 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:56.544 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-18 03:04:56.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1587, R2=1653, Total=3240. Warn if over 250 bubbles per interval.
17-03-18 03:04:56.954 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:56.984 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:04:57.404 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:57.434 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:57.434 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-18 03:04:57.434 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:04:57.564 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:57.594 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:04:57.594 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:04:57.724 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:04:57.754 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:04:57.754 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:04:57.754 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:04:57.884 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:04:57.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:58.344 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:04:58.374 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:04:58.374 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:04:58.374 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:04:59.384 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.016692,
17-03-18 03:04:59.594 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 03:04:59.594 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-18 03:04:59.594 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:04:59.614 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:04:59.614 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-18 03:04:59.614 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-18 03:04:59.824 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:04:59.844 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-18 03:04:59.844 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-18 03:04:59.894 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:04:59.914 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:04:59.914 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:05:00.014 -07 000000610 INF: =================== Cycle #108, Pumping Reagent IMT (1) ===================
17-03-18 03:05:00.014 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:05:00.014 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:05:00.044 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-18 03:05:00.044 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-18 03:05:00.044 -07 000000610 INF: =================== Cycle #108, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-18 03:05:00.174 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:05:00.214 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:05:01.544 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 3
17-03-18 03:05:01.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=3, R2=3, Total=6. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:01.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:05:01.684 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:05:02.104 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:05:02.134 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:02.134 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-18 03:05:02.134 -07 000000610 INF: =================== Cycle #108, Pumping Reagent IMT (1) ===================
17-03-18 03:05:02.264 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:05:02.294 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:05:02.294 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:05:02.424 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:05:02.454 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:05:02.454 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:05:02.454 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:05:02.584 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:05:02.614 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:03.044 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:05:03.074 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:03.074 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:05:03.074 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:05:04.294 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:05:04.294 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:05:04.294 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:05:04.314 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-18 03:05:04.314 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-18 03:05:04.314 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:05:04.544 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:05:04.564 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-18 03:05:04.564 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-18 03:05:04.614 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:05:04.634 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:05:04.634 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:05:04.734 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:05:04.734 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:05:04.734 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:05:04.744 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.019446,
17-03-18 03:05:04.764 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-18 03:05:04.764 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-18 03:05:04.764 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:05:04.894 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:05:04.934 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:05:05.804 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:05:05.834 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:05.834 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-18 03:05:05.834 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:05:05.964 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:05:05.994 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:05:05.994 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:05:06.124 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:05:06.154 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:05:06.154 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:05:06.154 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:05:06.284 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:05:06.314 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:06.544 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:06.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:06.744 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:05:06.774 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:06.774 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:05:06.774 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:05:06.774 -07 000000610 INF: =================== Cycle #108, Flow Cell Temp 65° ===================
17-03-18 03:05:06.774 -07 000000610 INF: =================== Cycle #108, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-18 03:05:06.774 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-18 03:05:06.774 -07 000000455 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:05:06.784 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:05:06.784 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:05:06.784 -07 000000444 INF: FPGA: Recv TEC2EN 
17-03-18 03:05:06.794 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:05:06.794 -07 000000610 INF: =================== Cycle #108, Flow Cell Temp 65° ===================
17-03-18 03:05:06.794 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:05:06.794 -07 000000610 INF: WaitCommand(30000) start
17-03-18 03:05:10.104 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.016692,
17-03-18 03:05:11.544 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:11.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:15.464 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.024884,
17-03-18 03:05:16.544 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:16.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:20.824 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.004458,
17-03-18 03:05:21.544 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:21.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:26.184 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.005817,
17-03-18 03:05:26.544 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:26.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:31.544 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.019446,
17-03-18 03:05:31.544 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:31.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:36.544 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:36.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:36.804 -07 000000610 INF: WaitCommand(30000) end
17-03-18 03:05:36.804 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:05:36.804 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-18 03:05:36.904 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:05:36.904 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.005817,
17-03-18 03:05:36.944 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-18 03:05:36.944 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-18 03:05:36.944 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:05:37.074 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-18 03:05:37.114 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:05:37.654 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:05:37.684 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:37.684 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-18 03:05:37.684 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:05:37.814 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:05:37.844 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:05:37.844 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:05:37.974 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:05:38.004 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:05:38.004 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:05:38.004 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:05:38.134 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:05:38.164 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:38.594 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:05:38.624 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:38.624 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:05:38.624 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:05:38.624 -07 000000430 INF: WaitCommand(30000) start
17-03-18 03:05:38.624 -07 000000629 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:05:38.624 -07 000000629 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:05:39.844 -07 000000629 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:05:39.844 -07 000000629 INF: LanePump: Xmit /1?\r
17-03-18 03:05:39.874 -07 000000629 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-18 03:05:39.874 -07 000000629 INF: LanePump: Current Position of Pump is: 1920
17-03-18 03:05:40.004 -07 000000629 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:05:40.044 -07 000000629 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:05:41.544 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:41.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:42.264 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.014009,
17-03-18 03:05:42.384 -07 000000629 INF: LanePump: Xmit /1Q\r
17-03-18 03:05:42.414 -07 000000629 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:05:42.834 -07 000000629 INF: LanePump: Xmit /1Q\r
17-03-18 03:05:42.864 -07 000000629 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:05:42.864 -07 000000629 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-18 03:05:42.864 -07 000000629 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:05:42.864 -07 000000629 INF: ===================  ===================
17-03-18 03:05:46.544 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:46.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:47.624 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.990831,
17-03-18 03:05:51.544 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:51.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:52.984 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.974486,
17-03-18 03:05:56.544 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:05:56.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:05:58.344 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.974486,
17-03-18 03:06:01.544 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:01.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:03.704 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.971733,
17-03-18 03:06:06.544 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:06.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:08.634 -07 000000430 INF: WaitCommand(30000) end
17-03-18 03:06:08.634 -07 000000610 INF: =================== Cycle #108, Flow Cell Temp 22° ===================
17-03-18 03:06:08.634 -07 000000610 INF: =================== Cycle #108, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-18 03:06:08.634 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-18 03:06:08.634 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-18 03:06:08.644 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:06:08.644 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-18 03:06:08.644 -07 000000561 INF: FPGA: Recv TEC2EN 
17-03-18 03:06:08.654 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:06:08.654 -07 000000610 INF: =================== Cycle #108, Flow Cell Temp 22° ===================
17-03-18 03:06:08.654 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:06:08.654 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:06:08.654 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-18 03:06:08.654 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:06:08.684 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-18 03:06:08.684 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-18 03:06:08.684 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:06:08.814 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-18 03:06:08.854 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:06:09.064 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.997626,
17-03-18 03:06:11.544 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:11.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:11.984 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:12.014 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:06:12.434 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:12.464 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:06:12.884 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:12.914 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:12.914 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-18 03:06:12.914 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:06:13.044 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:06:13.074 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:06:13.074 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:06:13.204 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:06:13.234 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:06:13.234 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:06:13.234 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:06:13.364 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:06:13.394 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:13.824 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:13.854 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:13.854 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:06:13.854 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:06:14.424 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.011254,
17-03-18 03:06:15.074 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-18 03:06:15.074 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-18 03:06:15.074 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:06:15.094 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:06:15.094 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-18 03:06:15.094 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-18 03:06:15.244 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:06:15.264 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:06:15.264 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:06:15.314 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:06:15.334 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:06:15.334 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:06:15.434 -07 000000610 INF: =================== Cycle #108, Pumping Reagent USM (2) ===================
17-03-18 03:06:15.434 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-18 03:06:15.434 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:06:15.464 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-18 03:06:15.464 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-18 03:06:15.464 -07 000000610 INF: =================== Cycle #108, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-18 03:06:15.594 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-18 03:06:15.634 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:06:16.544 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:16.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:17.074 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:17.104 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:06:17.524 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:17.554 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:17.554 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-18 03:06:17.554 -07 000000610 INF: =================== Cycle #108, Pumping Reagent USM (2) ===================
17-03-18 03:06:17.684 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:06:17.714 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:06:17.714 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:06:17.844 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:06:17.874 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:06:17.874 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:06:17.874 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:06:18.004 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:06:18.034 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:18.464 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:18.494 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:18.494 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-18 03:06:18.494 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:06:19.714 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-18 03:06:19.714 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-18 03:06:19.714 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:06:19.734 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-18 03:06:19.734 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-18 03:06:19.734 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-18 03:06:19.784 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.015368,
17-03-18 03:06:19.884 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:06:19.904 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-18 03:06:19.904 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-18 03:06:19.954 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:06:19.974 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:06:19.974 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-18 03:06:20.074 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:06:20.074 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-18 03:06:20.074 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:06:20.104 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-18 03:06:20.104 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-18 03:06:20.104 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-18 03:06:20.234 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-18 03:06:20.274 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:06:21.144 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:21.174 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:21.174 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-18 03:06:21.174 -07 000000610 INF: =================== Cycle #108, Pumping Reagent PR2 (3) ===================
17-03-18 03:06:21.304 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:06:21.334 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:06:21.334 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:06:21.464 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-18 03:06:21.494 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:06:21.494 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:06:21.494 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-18 03:06:21.544 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:21.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:21.624 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-18 03:06:21.654 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:22.084 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:22.114 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:22.114 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-18 03:06:22.114 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:06:22.114 -07 000000561 INF: WaitCommand(10000) start
17-03-18 03:06:22.114 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:06:22.114 -07 000000591 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-18 03:06:23.334 -07 000000591 INF: AsyncDelayTimer waited 1216ms
17-03-18 03:06:23.334 -07 000000591 INF: LanePump: Xmit /1?\r
17-03-18 03:06:23.364 -07 000000591 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-18 03:06:23.364 -07 000000591 INF: LanePump: Current Position of Pump is: 1110
17-03-18 03:06:23.494 -07 000000591 INF: LanePump: Xmit /1V1500OA0R\r
17-03-18 03:06:23.534 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:06:25.064 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:25.094 -07 000000591 INF: LanePump: Recv /0@(0x03)\r\n
17-03-18 03:06:25.144 -07 000000455 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.016692,
17-03-18 03:06:25.514 -07 000000591 INF: LanePump: Xmit /1Q\r
17-03-18 03:06:25.544 -07 000000591 INF: LanePump: Recv /0`(0x03)\r\n
17-03-18 03:06:25.544 -07 000000591 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-18 03:06:25.544 -07 000000591 INF: =================== Dispense to DispenseAndWait ===================
17-03-18 03:06:25.544 -07 000000591 INF: ===================  ===================
17-03-18 03:06:26.544 -07 000000590 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:26.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:30.504 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.993549,
17-03-18 03:06:31.544 -07 000000444 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:31.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:32.124 -07 000000561 INF: WaitCommand(10000) end
17-03-18 03:06:32.124 -07 000000610 INF: =================== Cycle #108, Imaging ===================
17-03-18 03:06:32.124 -07 000000610 INF: Imaging Cycle 108: ScanTilesCommand Cycle 108 time start.
17-03-18 03:06:32.124 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-18 03:06:32.124 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:06:32.154 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-18 03:06:32.154 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-18 03:06:32.154 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-18 03:06:32.454 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-18 03:06:32.474 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-18 03:06:32.474 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-18 03:06:32.524 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-18 03:06:32.544 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-18 03:06:32.544 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:32.544 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:32.544 -07 000000424 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-18 03:06:32.544 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:32.544 -07 000000424 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-18 03:06:32.544 -07 000000444 INF: FPGA: Recv EXLED1ON 
17-03-18 03:06:32.554 -07 000000424 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:06:32.554 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-18 03:06:32.554 -07 000000591 INF: FPGA: Recv EXLED1ADCR 23180
17-03-18 03:06:32.564 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:32.564 -07 000000424 INF: RedLED: Using Red data: Photodiode ADC 23180 --> 7.4 mW (old method), or 205.4 mW (new method). Difference = 198.0 mW
17-03-18 03:06:32.564 -07 000000424 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-18 03:06:32.564 -07 000000606 INF: FPGA: Recv EXLED1OFF 
17-03-18 03:06:32.574 -07 000000424 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:32.574 -07 000000424 INF: RedLED: LED was on for 20 ms
17-03-18 03:06:32.574 -07 000000424 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-18 03:06:32.574 -07 000000424 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-18 03:06:32.574 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:32.574 -07 000000424 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-18 03:06:32.574 -07 000000501 INF: FPGA: Recv EXLED2ON 
17-03-18 03:06:32.584 -07 000000424 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:06:32.584 -07 000000424 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 03:06:32.584 -07 000000579 INF: FPGA: Recv EXLED1ADCR 2101
17-03-18 03:06:32.594 -07 000000424 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:32.594 -07 000000424 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-18 03:06:32.594 -07 000000424 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-18 03:06:32.594 -07 000000467 INF: FPGA: Recv EXLED2OFF 
17-03-18 03:06:32.604 -07 000000424 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:06:32.604 -07 000000424 INF: GreenLED: LED was on for 19 ms
17-03-18 03:06:32.604 -07 000000424 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-18 03:06:32.604 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:06:32.604 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-18 03:06:32.614 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:06:32.614 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-18 03:06:33.114 -07 000000461 INF: FPGA: Recv EMOUT
17-03-18 03:06:33.114 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-18 03:06:33.114 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-18 03:06:33.114 -07 000000629 INF: FPGA: Recv EMCUR 
17-03-18 03:06:33.124 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:06:33.124 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:06:33.124 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.12665120097077. ------
17-03-18 03:06:33.124 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:06:33.124 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17849 mm
17-03-18 03:06:33.124 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:06:33.124 -07 000000579 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:06:33.134 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:06:33.134 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:06:33.134 -07 000000606 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-18 03:06:33.134 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38992, sync = True, waitForSettling = False)
17-03-18 03:06:33.134 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:33.134 -07 000000618 INF: Z Motor: Moving to -0.178494 mm, started at -0.126651 mm, distance = -51.84 um
17-03-18 03:06:33.134 -07 000000461 INF: FPGA: Recv YRDPOS 154387
17-03-18 03:06:33.144 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:33.144 -07 000000606 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:33.144 -07 000000606 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-18 03:06:33.144 -07 000000606 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:06:33.144 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:06:33.154 -07 000000618 INF: FPGA: Xmit ZDACW 38992\n [Z Motor]
17-03-18 03:06:33.154 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:06:33.164 -07 000000618 INF: FPGA: 'ZDACW 38992' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:06:33.164 -07 000000606 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:06:33.174 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:33.174 -07 000000561 INF: FPGA: Recv ZDACR 38992
17-03-18 03:06:33.184 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:06:33.184 -07 000000618 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 03:06:33.344 -07 000000629 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:06:33.344 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-18 03:06:34.844 -07 000000626 INF: FPGA: Recv YMVTO 122703 24782
17-03-18 03:06:34.844 -07 000000606 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-18 03:06:34.844 -07 000000606 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 03:06:34.844 -07 000000606 INF: Y Motor: To move from 75.384 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-18 03:06:34.844 -07 000000606 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.472 mm, average velocity = 9.069 mm/sec
17-03-18 03:06:35.864 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.007176,
17-03-18 03:06:36.544 -07 000000629 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:36.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:37.694 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:37.694 -07 000000618 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:06:37.704 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.704 -07 000000606 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:37.724 -07 000000606 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:06:37.724 -07 000000606 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 03:06:37.724 -07 000000606 INF: Y Motor: Moved to 59.9106 after 4599 ms
17-03-18 03:06:37.734 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178494 mm (DAC = 38992)
17-03-18 03:06:37.734 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.734 -07 000000461 INF: FPGA: Recv ZSGSRD 37078
17-03-18 03:06:37.744 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:06:37.744 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.744 -07 000000512 INF: FPGA: Recv ZSGSRD 37079
17-03-18 03:06:37.754 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.754 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.754 -07 000000569 INF: FPGA: Recv ZSGSRD 37080
17-03-18 03:06:37.764 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.764 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.764 -07 000000590 INF: FPGA: Recv ZSGSRD 37071
17-03-18 03:06:37.774 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.774 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.774 -07 000000618 INF: FPGA: Recv ZSGSRD 37077
17-03-18 03:06:37.784 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.784 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.784 -07 000000591 INF: FPGA: Recv ZSGSRD 37080
17-03-18 03:06:37.794 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.794 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.794 -07 000000561 INF: FPGA: Recv ZSGSRD 37072
17-03-18 03:06:37.804 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.804 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.804 -07 000000590 INF: FPGA: Recv ZSGSRD 37070
17-03-18 03:06:37.814 -07 000000455 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.814 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.814 -07 000000467 INF: FPGA: Recv ZSGSRD 37072
17-03-18 03:06:37.824 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.824 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:37.824 -07 000000626 INF: FPGA: Recv ZSGSRD 37079
17-03-18 03:06:37.834 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.834 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:37.834 -07 000000579 INF: FPGA: Recv ZPIEZORD 33341
17-03-18 03:06:37.844 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:37.844 -07 000000455 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -8.3 V.
17-03-18 03:06:37.844 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37076 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37078 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37070 (-177.6 uncal um), Max = 37080 (-177.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:06:37.844 -07 000000455 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37076, posNoise = 4, negNoise = 6
17-03-18 03:06:37.844 -07 000000455 INF: Z Motor: After move to -0.178494, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:37.844 -07 000000455 INF: Z Motor: Settle wait time = 4602 ms, measure time = 108 ms (allowed 150 ms), total time = 4710 ms
17-03-18 03:06:37.844 -07 000000455 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:06:37.894 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-18 03:06:37.894 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:06:37.894 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:37.894 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:37.894 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:37.894 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:37.894 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:06:37.894 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:06:37.894 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:06:37.894 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:06:37.924 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 03:06:37.924 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:06:37.924 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 03:06:37.924 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:06:37.934 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:06:37.934 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-18 03:06:37.944 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:06:37.984 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:06:38.284 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:06:38.284 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:06:38.284 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:06:38.284 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477843456, 0x0, 559484976) start.
17-03-18 03:06:38.324 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:06:38.324 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-18 03:06:38.324 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:06:38.414 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477843456, 0x0, 559484976) end. Duration was 127 ms.
17-03-18 03:06:38.414 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:38.414 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:06:38.414 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:06:38.524 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:06:38.524 -07 000000444 INF: Image SNR check: start
17-03-18 03:06:38.524 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:06:38.534 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:06:38.534 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:06:38.534 -07 000000444 INF: Image SNR check: pass  [peak (Max-Min)=146.21]
17-03-18 03:06:38.534 -07 000000444 INF: Autofocus start
17-03-18 03:06:38.534 -07 000000444 INF: MeasureProfile start
17-03-18 03:06:38.544 -07 000000444 INF: MeasureProfile done
17-03-18 03:06:38.544 -07 000000444 INF: X=48  Z correction [um]=0.1739867
17-03-18 03:06:38.544 -07 000000444 INF: Autofocus finished
17-03-18 03:06:38.734 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:06:38.734 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:06:38.734 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.178507441379064. ----------
17-03-18 03:06:38.734 -07 000000610 INF: Cycle	108	Tile	1	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:06:38.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37543, sync = True, waitForSettling = True)
17-03-18 03:06:38.744 -07 000000610 INF: Z Motor: Moving to -0.171861 mm, started at -0.178507 mm, distance = 6.65 um
17-03-18 03:06:38.744 -07 000000610 INF: FPGA: Xmit ZDACW 37543\n [Z Motor]
17-03-18 03:06:38.744 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:06:38.754 -07 000000610 INF: FPGA: 'ZDACW 37543' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:06:38.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:38.754 -07 000000467 INF: FPGA: Recv ZDACR 37543
17-03-18 03:06:38.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:38.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:06:38.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:38.914 -07 000000590 INF: FPGA: Recv ZSGSRD 36044
17-03-18 03:06:38.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:38.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:38.924 -07 000000502 INF: FPGA: Recv ZSGSRD 36042
17-03-18 03:06:38.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:38.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:38.934 -07 000000569 INF: FPGA: Recv ZSGSRD 36043
17-03-18 03:06:38.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:38.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:38.944 -07 000000591 INF: FPGA: Recv ZSGSRD 36041
17-03-18 03:06:38.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:38.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:38.954 -07 000000467 INF: FPGA: Recv ZSGSRD 36046
17-03-18 03:06:38.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:38.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:38.964 -07 000000424 INF: FPGA: Recv ZSGSRD 36049
17-03-18 03:06:38.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:38.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:38.974 -07 000000444 INF: FPGA: Recv ZSGSRD 36041
17-03-18 03:06:38.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:38.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:38.984 -07 000000462 INF: FPGA: Recv ZSGSRD 36040
17-03-18 03:06:38.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:38.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:38.994 -07 000000512 INF: FPGA: Recv ZSGSRD 36038
17-03-18 03:06:39.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:39.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:39.004 -07 000000467 INF: FPGA: Recv ZSGSRD 36047
17-03-18 03:06:39.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:39.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:39.014 -07 000000590 INF: FPGA: Recv ZPIEZORD 31907
17-03-18 03:06:39.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:39.024 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.729 V. Piezo Error = -9.1 V.
17-03-18 03:06:39.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36043 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36042 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36038 (-171.0 uncal um), Max = 36049 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:06:39.024 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36043, posNoise = 6, negNoise = 5
17-03-18 03:06:39.024 -07 000000610 INF: Z Motor: After move to -0.171861, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:39.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:06:39.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:39.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:39.024 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:39.024 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:39.024 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:06:39.024 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:06:39.024 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:06:39.024 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:06:39.024 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:06:39.024 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:06:39.024 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:06:39.024 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:06:39.034 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:06:39.034 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:06:39.044 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:06:39.044 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:06:39.054 -07 000000467 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-18 03:06:39.054 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:06:39.054 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:06:39.054 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:06:39.064 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:06:39.064 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 44 ms.
17-03-18 03:06:39.074 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37719 150\n [Camera]
17-03-18 03:06:39.274 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:06:39.674 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:06:39.674 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:06:39.674 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:39.674 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:06:39.674 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:39.674 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 03:06:39.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:06:39.674 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:39.674 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:39.674 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 03:06:39.864 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37719 787
17-03-18 03:06:40.014 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:06:40.074 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms.
17-03-18 03:06:40.074 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:06:40.074 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:40.084 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms.
17-03-18 03:06:40.084 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-18 03:06:40.084 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:40.084 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:06:40.084 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-18 03:06:40.084 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:06:40.094 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-18 03:06:40.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:06:40.204 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:06:40.214 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:40.214 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:40.214 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 03:06:40.214 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:06:40.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:06:40.214 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:40.214 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:40.214 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 03:06:40.404 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:06:40.404 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:06:40.404 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37719 150' command took 2 ms to send, 1321 ms to get response, and 1330 ms overall
17-03-18 03:06:40.404 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172179
17-03-18 03:06:40.404 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17218 mm
17-03-18 03:06:40.404 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:06:40.404 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:06:40.404 -07 000000579 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 03:06:40.404 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:40.404 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37612, sync = True, waitForSettling = False)
17-03-18 03:06:40.404 -07 000000462 INF: Z Motor: Moving to -0.172177 mm, started at -0.171871 mm, distance = -0.31 um
17-03-18 03:06:40.404 -07 000000502 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:06:40.414 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:06:40.414 -07 000000579 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:40.414 -07 000000579 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:06:40.414 -07 000000579 INF: Y Motor: Moving 1331 steps2
17-03-18 03:06:40.414 -07 000000462 INF: FPGA: Xmit ZDACW 37612\n [Z Motor]
17-03-18 03:06:40.414 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 03:06:40.424 -07 000000462 INF: FPGA: 'ZDACW 37612' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:06:40.424 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:40.424 -07 000000576 INF: FPGA: Recv ZDACR 37612
17-03-18 03:06:40.434 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:40.434 -07 000000462 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-18 03:06:40.434 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:06:40.614 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 406 ms.
17-03-18 03:06:40.614 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-18 03:06:40.614 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:40.614 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 405 ms.
17-03-18 03:06:40.614 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:06:40.614 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:40.624 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 03:06:40.624 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-18 03:06:40.624 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 03:06:40.634 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-18 03:06:40.804 -07 000000591 INF: FPGA: Recv YMVTILE
17-03-18 03:06:40.804 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:06:40.844 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:40.844 -07 000000618 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:06:40.854 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:06:40.854 -07 000000579 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:40.854 -07 000000579 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:06:40.854 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.090 mm/sec
17-03-18 03:06:41.224 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.005817,
17-03-18 03:06:41.544 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:41.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:41.804 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:41.804 -07 000000461 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:06:41.814 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.814 -07 000000579 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:41.844 -07 000000579 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:06:41.844 -07 000000579 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:06:41.844 -07 000000579 INF: Y Motor: Moved to 60.7329 after 1435 ms (table move)
17-03-18 03:06:41.844 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172177 mm (DAC = 37612)
17-03-18 03:06:41.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.844 -07 000000467 INF: FPGA: Recv ZSGSRD 36092
17-03-18 03:06:41.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:06:41.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.854 -07 000000462 INF: FPGA: Recv ZSGSRD 36088
17-03-18 03:06:41.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.864 -07 000000618 INF: FPGA: Recv ZSGSRD 36093
17-03-18 03:06:41.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.874 -07 000000502 INF: FPGA: Recv ZSGSRD 36091
17-03-18 03:06:41.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.884 -07 000000606 INF: FPGA: Recv ZSGSRD 36094
17-03-18 03:06:41.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.894 -07 000000467 INF: FPGA: Recv ZSGSRD 36090
17-03-18 03:06:41.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.904 -07 000000569 INF: FPGA: Recv ZSGSRD 36102
17-03-18 03:06:41.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.914 -07 000000561 INF: FPGA: Recv ZSGSRD 36095
17-03-18 03:06:41.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.924 -07 000000430 INF: FPGA: Recv ZSGSRD 36084
17-03-18 03:06:41.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:41.934 -07 000000444 INF: FPGA: Recv ZSGSRD 36094
17-03-18 03:06:41.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:41.944 -07 000000576 INF: FPGA: Recv ZPIEZORD 31969
17-03-18 03:06:41.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:41.954 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -9.1 V.
17-03-18 03:06:41.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36092 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36092 (-171.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36084 (-171.3 uncal um), Max = 36102 (-171.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:06:41.954 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36092, posNoise = 10, negNoise = 8
17-03-18 03:06:41.954 -07 000000610 INF: Z Motor: After move to -0.172177, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:41.954 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 107 ms (allowed 150 ms), total time = 1544 ms
17-03-18 03:06:41.954 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:06:42.004 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-18 03:06:42.004 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:06:42.004 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.172186016631571. ----------
17-03-18 03:06:42.004 -07 000000610 INF: Cycle	108	Tile	2	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:06:42.004 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37436, sync = True, waitForSettling = True)
17-03-18 03:06:42.004 -07 000000610 INF: Z Motor: Moving to -0.171371 mm, started at -0.172186 mm, distance = 0.81 um
17-03-18 03:06:42.004 -07 000000610 INF: FPGA: Xmit ZDACW 37436\n [Z Motor]
17-03-18 03:06:42.004 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:06:42.014 -07 000000610 INF: FPGA: 'ZDACW 37436' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:06:42.014 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:42.014 -07 000000618 INF: FPGA: Recv ZDACR 37436
17-03-18 03:06:42.024 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.024 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:06:42.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.174 -07 000000569 INF: FPGA: Recv ZSGSRD 35966
17-03-18 03:06:42.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:42.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.184 -07 000000501 INF: FPGA: Recv ZSGSRD 35967
17-03-18 03:06:42.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.194 -07 000000461 INF: FPGA: Recv ZSGSRD 35962
17-03-18 03:06:42.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.204 -07 000000502 INF: FPGA: Recv ZSGSRD 35967
17-03-18 03:06:42.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.214 -07 000000626 INF: FPGA: Recv ZSGSRD 35964
17-03-18 03:06:42.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.224 -07 000000569 INF: FPGA: Recv ZSGSRD 35967
17-03-18 03:06:42.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.234 -07 000000606 INF: FPGA: Recv ZSGSRD 35973
17-03-18 03:06:42.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.244 -07 000000430 INF: FPGA: Recv ZSGSRD 35964
17-03-18 03:06:42.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.254 -07 000000590 INF: FPGA: Recv ZSGSRD 35965
17-03-18 03:06:42.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:42.264 -07 000000618 INF: FPGA: Recv ZSGSRD 35965
17-03-18 03:06:42.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:42.274 -07 000000455 INF: FPGA: Recv ZPIEZORD 31811
17-03-18 03:06:42.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:42.284 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.712 V. Piezo Error = -9.2 V.
17-03-18 03:06:42.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35966 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35966 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35962 (-170.5 uncal um), Max = 35973 (-170.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:06:42.284 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35966, posNoise = 7, negNoise = 4
17-03-18 03:06:42.284 -07 000000610 INF: Z Motor: After move to -0.171371, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:42.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:06:42.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:42.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:42.284 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:42.284 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:42.284 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:06:42.284 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:06:42.284 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:06:42.284 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:06:42.284 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:06:42.284 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:06:42.284 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:06:42.284 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:06:42.294 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:06:42.294 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:06:42.294 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:06:42.294 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:06:42.304 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:06:42.304 -07 000000590 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:06:42.304 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:06:42.304 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:06:42.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37612 150\n [Camera]
17-03-18 03:06:42.504 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:06:42.914 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:06:42.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:06:42.914 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:42.914 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:42.914 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 03:06:42.914 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:06:42.914 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:06:42.914 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:42.914 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:42.914 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 03:06:43.104 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37612 787
17-03-18 03:06:43.254 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:06:43.314 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-18 03:06:43.314 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:06:43.314 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:43.314 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 399 ms.
17-03-18 03:06:43.314 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:06:43.314 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:43.314 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:06:43.314 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:06:43.314 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:06:43.324 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-18 03:06:43.444 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:06:43.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:06:43.444 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:43.444 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:43.444 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 03:06:43.444 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:06:43.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:06:43.454 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:43.454 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:43.454 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 03:06:43.634 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:06:43.634 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:06:43.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37612 150' command took 5 ms to send, 1318 ms to get response, and 1329 ms overall
17-03-18 03:06:43.644 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:06:43.644 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.17137656590171. ------
17-03-18 03:06:43.644 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:06:43.644 -07 000000455 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17803 mm
17-03-18 03:06:43.644 -07 000000455 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:06:43.644 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:06:43.654 -07 000000461 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:06:43.654 -07 000000461 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-18 03:06:43.654 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:43.654 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:06:43.654 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38891, sync = True, waitForSettling = False)
17-03-18 03:06:43.654 -07 000000424 INF: Z Motor: Moving to -0.178032 mm, started at -0.171377 mm, distance = -6.66 um
17-03-18 03:06:43.654 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:06:43.664 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:43.664 -07 000000461 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:43.664 -07 000000461 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:06:43.664 -07 000000461 INF: Y Motor: Moving 1344 steps-20
17-03-18 03:06:43.664 -07 000000424 INF: FPGA: Xmit ZDACW 38891\n [Z Motor]
17-03-18 03:06:43.664 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:06:43.674 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:06:43.674 -07 000000424 INF: FPGA: 'ZDACW 38891' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-18 03:06:43.684 -07 000000461 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:06:43.694 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:43.694 -07 000000590 INF: FPGA: Recv ZDACR 38891
17-03-18 03:06:43.704 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:06:43.704 -07 000000424 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-18 03:06:43.854 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 03:06:43.854 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:06:43.854 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:43.854 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 03:06:43.854 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:06:43.854 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:43.854 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:06:43.854 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-18 03:06:43.854 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:06:43.864 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-18 03:06:43.874 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:06:43.874 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:06:44.054 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 03:06:44.054 -07 000000461 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:06:44.104 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:44.104 -07 000000618 INF: FPGA: Recv YRDPOS 126082
17-03-18 03:06:44.114 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:06:44.114 -07 000000461 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:44.114 -07 000000461 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:06:44.114 -07 000000461 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-18 03:06:45.064 -07 000000461 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:45.064 -07 000000424 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:06:45.074 -07 000000461 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:45.074 -07 000000461 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:45.094 -07 000000461 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:06:45.094 -07 000000461 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:06:45.094 -07 000000461 INF: Y Motor: Moved to 61.5640 after 1449 ms (table move)
17-03-18 03:06:45.104 -07 000000455 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178032 mm (DAC = 38891)
17-03-18 03:06:45.104 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.104 -07 000000626 INF: FPGA: Recv ZSGSRD 37008
17-03-18 03:06:45.114 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:06:45.114 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.114 -07 000000467 INF: FPGA: Recv ZSGSRD 37000
17-03-18 03:06:45.124 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.124 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.124 -07 000000462 INF: FPGA: Recv ZSGSRD 36998
17-03-18 03:06:45.134 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.134 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.134 -07 000000569 INF: FPGA: Recv ZSGSRD 37003
17-03-18 03:06:45.144 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.144 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.144 -07 000000618 INF: FPGA: Recv ZSGSRD 37011
17-03-18 03:06:45.154 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.154 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.154 -07 000000444 INF: FPGA: Recv ZSGSRD 37007
17-03-18 03:06:45.164 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.164 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.164 -07 000000512 INF: FPGA: Recv ZSGSRD 37007
17-03-18 03:06:45.174 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.174 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.174 -07 000000461 INF: FPGA: Recv ZSGSRD 36998
17-03-18 03:06:45.184 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.184 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.184 -07 000000569 INF: FPGA: Recv ZSGSRD 37003
17-03-18 03:06:45.194 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.194 -07 000000455 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:45.194 -07 000000467 INF: FPGA: Recv ZSGSRD 37003
17-03-18 03:06:45.204 -07 000000455 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.204 -07 000000455 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:45.204 -07 000000444 INF: FPGA: Recv ZPIEZORD 33231
17-03-18 03:06:45.214 -07 000000455 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:45.214 -07 000000455 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.934 V. Piezo Error = -8.4 V.
17-03-18 03:06:45.214 -07 000000455 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 37004 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37003 (-177.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36998 (-177.1 uncal um), Max = 37011 (-177.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:06:45.214 -07 000000455 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37004, posNoise = 7, negNoise = 6
17-03-18 03:06:45.214 -07 000000455 INF: Z Motor: After move to -0.178032, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:45.214 -07 000000455 INF: Z Motor: Settle wait time = 1453 ms, measure time = 106 ms (allowed 150 ms), total time = 1559 ms
17-03-18 03:06:45.214 -07 000000455 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:06:45.264 -07 000000455 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 03:06:45.264 -07 000000455 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:06:45.264 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:45.264 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:45.264 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:45.264 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:45.264 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:06:45.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:06:45.264 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:06:45.264 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:06:45.274 -07 000000467 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:06:45.274 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:06:45.284 -07 000000467 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-18 03:06:45.284 -07 000000467 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-18 03:06:45.284 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:06:45.334 -07 000000591 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:06:45.634 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:06:45.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:06:45.634 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:06:45.634 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617741808, 0x0, 559484976) start.
17-03-18 03:06:45.674 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:06:45.674 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-18 03:06:45.674 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 383 ms to get response, and 384 ms overall
17-03-18 03:06:45.754 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617741808, 0x0, 559484976) end. Duration was 124 ms.
17-03-18 03:06:45.754 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:45.764 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:06:45.764 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-18 03:06:45.774 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:06:45.774 -07 000000424 INF: Autofocus start
17-03-18 03:06:45.774 -07 000000424 INF: MeasureProfile start
17-03-18 03:06:45.774 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:06:45.784 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:06:45.784 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:06:45.784 -07 000000424 INF: MeasureProfile done
17-03-18 03:06:45.784 -07 000000424 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 03:06:45.784 -07 000000424 INF: Autofocus finished
17-03-18 03:06:45.984 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:06:45.984 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-18 03:06:45.994 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178044898104857. ----------
17-03-18 03:06:45.994 -07 000000610 INF: Cycle	108	Tile	3	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:06:45.994 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37371, sync = True, waitForSettling = True)
17-03-18 03:06:45.994 -07 000000610 INF: Z Motor: Moving to -0.171073 mm, started at -0.178045 mm, distance = 6.97 um
17-03-18 03:06:45.994 -07 000000610 INF: FPGA: Xmit ZDACW 37371\n [Z Motor]
17-03-18 03:06:45.994 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:06:46.004 -07 000000610 INF: FPGA: 'ZDACW 37371' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:06:46.004 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:46.004 -07 000000606 INF: FPGA: Recv ZDACR 37371
17-03-18 03:06:46.014 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.014 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:06:46.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.164 -07 000000590 INF: FPGA: Recv ZSGSRD 35920
17-03-18 03:06:46.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.174 -07 000000430 INF: FPGA: Recv ZSGSRD 35923
17-03-18 03:06:46.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.184 -07 000000579 INF: FPGA: Recv ZSGSRD 35922
17-03-18 03:06:46.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.194 -07 000000561 INF: FPGA: Recv ZSGSRD 35920
17-03-18 03:06:46.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.204 -07 000000502 INF: FPGA: Recv ZSGSRD 35926
17-03-18 03:06:46.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.214 -07 000000629 INF: FPGA: Recv ZSGSRD 35922
17-03-18 03:06:46.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.224 -07 000000430 INF: FPGA: Recv ZSGSRD 35923
17-03-18 03:06:46.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.234 -07 000000455 INF: FPGA: Recv ZSGSRD 35915
17-03-18 03:06:46.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.244 -07 000000512 INF: FPGA: Recv ZSGSRD 35918
17-03-18 03:06:46.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:46.254 -07 000000576 INF: FPGA: Recv ZSGSRD 35926
17-03-18 03:06:46.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:46.274 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:46.274 -07 000000569 INF: FPGA: Recv ZPIEZORD 31792
17-03-18 03:06:46.284 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:06:46.284 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -9.1 V.
17-03-18 03:06:46.284 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35922 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35922 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35915 (-170.2 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:06:46.284 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35922, posNoise = 4, negNoise = 7
17-03-18 03:06:46.284 -07 000000610 INF: Z Motor: After move to -0.171073, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:46.284 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-18 03:06:46.284 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:46.284 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:46.284 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:46.284 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:06:46.284 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:06:46.284 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:06:46.284 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:06:46.284 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:46.284 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:06:46.284 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:06:46.294 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:06:46.294 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:06:46.294 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:06:46.294 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:06:46.294 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:06:46.294 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:06:46.304 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:06:46.304 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:06:46.304 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:06:46.304 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:06:46.304 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37547 150\n [Camera]
17-03-18 03:06:46.504 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:06:46.544 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:46.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:46.584 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.986717,
17-03-18 03:06:46.904 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:06:46.904 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:06:46.904 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:46.904 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:46.904 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-18 03:06:46.904 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:06:46.904 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:06:46.904 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:47.064 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:47.064 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:06:47.094 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37547 788
17-03-18 03:06:47.244 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:06:47.304 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:06:47.304 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:06:47.304 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:47.304 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:06:47.304 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:06:47.444 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:06:47.444 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:06:47.444 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:47.444 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:06:47.444 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:06:47.444 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:06:47.444 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-18 03:06:47.444 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:47.444 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:47.454 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-18 03:06:47.454 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:47.454 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:06:47.464 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 556 ms.
17-03-18 03:06:47.474 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:47.474 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 03:06:47.634 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:06:47.634 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:06:47.634 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37547 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-18 03:06:47.634 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171398
17-03-18 03:06:47.634 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17140 mm
17-03-18 03:06:47.634 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:06:47.634 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:06:47.634 -07 000000579 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 03:06:47.634 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:47.634 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37442, sync = True, waitForSettling = False)
17-03-18 03:06:47.634 -07 000000467 INF: Z Motor: Moving to -0.171398 mm, started at -0.171094 mm, distance = -0.30 um
17-03-18 03:06:47.644 -07 000000467 INF: FPGA: Xmit ZDACW 37442\n [Z Motor]
17-03-18 03:06:47.644 -07 000000501 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:06:47.644 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:06:47.644 -07 000000579 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:47.644 -07 000000579 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:06:47.644 -07 000000579 INF: Y Motor: Moving 1342 steps-19
17-03-18 03:06:47.644 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 03:06:47.654 -07 000000467 INF: FPGA: 'ZDACW 37442' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:47.654 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:47.654 -07 000000502 INF: FPGA: Recv ZDACR 37442
17-03-18 03:06:47.664 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:06:47.664 -07 000000467 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:47.664 -07 000000467 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-18 03:06:47.834 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:06:47.834 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:06:47.834 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:47.834 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:06:47.834 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:06:47.844 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:06:47.844 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:06:47.844 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:47.844 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:06:47.854 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-18 03:06:48.034 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 03:06:48.044 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 394 ms overall
17-03-18 03:06:48.084 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:48.084 -07 000000591 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:06:48.094 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:06:48.094 -07 000000579 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:48.094 -07 000000579 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:06:48.094 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-18 03:06:49.044 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:49.044 -07 000000590 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:06:49.054 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:49.054 -07 000000579 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:49.074 -07 000000579 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:06:49.074 -07 000000579 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:06:49.074 -07 000000579 INF: Y Motor: Moved to 62.3955 after 1439 ms (table move)
17-03-18 03:06:49.084 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171398 mm (DAC = 37442)
17-03-18 03:06:49.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.084 -07 000000512 INF: FPGA: Recv ZSGSRD 35972
17-03-18 03:06:49.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:06:49.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.094 -07 000000579 INF: FPGA: Recv ZSGSRD 35976
17-03-18 03:06:49.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.104 -07 000000629 INF: FPGA: Recv ZSGSRD 35965
17-03-18 03:06:49.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.114 -07 000000590 INF: FPGA: Recv ZSGSRD 35965
17-03-18 03:06:49.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.124 -07 000000467 INF: FPGA: Recv ZSGSRD 35965
17-03-18 03:06:49.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.134 -07 000000501 INF: FPGA: Recv ZSGSRD 35973
17-03-18 03:06:49.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.144 -07 000000455 INF: FPGA: Recv ZSGSRD 35968
17-03-18 03:06:49.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.154 -07 000000626 INF: FPGA: Recv ZSGSRD 35969
17-03-18 03:06:49.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.164 -07 000000576 INF: FPGA: Recv ZSGSRD 35966
17-03-18 03:06:49.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.174 -07 000000561 INF: FPGA: Recv ZSGSRD 35977
17-03-18 03:06:49.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:49.184 -07 000000512 INF: FPGA: Recv ZPIEZORD 31859
17-03-18 03:06:49.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.194 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.713 V. Piezo Error = -9.1 V.
17-03-18 03:06:49.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35970 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35968 (-170.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35965 (-170.5 uncal um), Max = 35977 (-170.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:06:49.194 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35970, posNoise = 7, negNoise = 5
17-03-18 03:06:49.194 -07 000000610 INF: Z Motor: After move to -0.171398, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:49.194 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 109 ms (allowed 150 ms), total time = 1551 ms
17-03-18 03:06:49.194 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:06:49.244 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-18 03:06:49.244 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:06:49.244 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.171402262750277. ----------
17-03-18 03:06:49.244 -07 000000610 INF: Cycle	108	Tile	4	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:06:49.244 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37265, sync = True, waitForSettling = True)
17-03-18 03:06:49.244 -07 000000610 INF: Z Motor: Moving to -0.170588 mm, started at -0.171402 mm, distance = 0.81 um
17-03-18 03:06:49.244 -07 000000610 INF: FPGA: Xmit ZDACW 37265\n [Z Motor]
17-03-18 03:06:49.244 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:06:49.254 -07 000000610 INF: FPGA: 'ZDACW 37265' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:06:49.254 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:49.254 -07 000000462 INF: FPGA: Recv ZDACR 37265
17-03-18 03:06:49.264 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.264 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:06:49.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.414 -07 000000461 INF: FPGA: Recv ZSGSRD 35846
17-03-18 03:06:49.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:49.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.424 -07 000000579 INF: FPGA: Recv ZSGSRD 35848
17-03-18 03:06:49.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.434 -07 000000569 INF: FPGA: Recv ZSGSRD 35841
17-03-18 03:06:49.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.444 -07 000000424 INF: FPGA: Recv ZSGSRD 35837
17-03-18 03:06:49.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.454 -07 000000629 INF: FPGA: Recv ZSGSRD 35847
17-03-18 03:06:49.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.464 -07 000000512 INF: FPGA: Recv ZSGSRD 35841
17-03-18 03:06:49.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.474 -07 000000455 INF: FPGA: Recv ZSGSRD 35844
17-03-18 03:06:49.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.484 -07 000000606 INF: FPGA: Recv ZSGSRD 35846
17-03-18 03:06:49.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.494 -07 000000502 INF: FPGA: Recv ZSGSRD 35847
17-03-18 03:06:49.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:49.504 -07 000000462 INF: FPGA: Recv ZSGSRD 35844
17-03-18 03:06:49.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.514 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:49.514 -07 000000591 INF: FPGA: Recv ZPIEZORD 31674
17-03-18 03:06:49.524 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:49.524 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.2 V.
17-03-18 03:06:49.524 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35844 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35845 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35837 (-169.7 uncal um), Max = 35848 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:06:49.524 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35844, posNoise = 4, negNoise = 7
17-03-18 03:06:49.524 -07 000000610 INF: Z Motor: After move to -0.170588, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:49.524 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:06:49.524 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:49.524 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:49.524 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:49.524 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:49.524 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:06:49.524 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:06:49.524 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:06:49.524 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:06:49.524 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:06:49.524 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:06:49.524 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:06:49.524 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:06:49.534 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:06:49.534 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:06:49.534 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:06:49.534 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:06:49.544 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:06:49.544 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:06:49.544 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:06:49.544 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:06:49.554 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37442 150\n [Camera]
17-03-18 03:06:49.754 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:06:50.154 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:06:50.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:06:50.154 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:06:50.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:06:50.154 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:50.154 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:50.294 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:50.294 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-18 03:06:50.294 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:50.294 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:06:50.344 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37442 787
17-03-18 03:06:50.494 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:06:50.664 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 03:06:50.664 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 03:06:50.664 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:50.664 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 03:06:50.664 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:06:50.664 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:50.664 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:06:50.664 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-18 03:06:50.674 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:06:50.674 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 03:06:50.684 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:06:50.684 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:06:50.684 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:50.694 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:06:50.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:06:50.694 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:50.694 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:50.694 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:06:50.694 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:50.694 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-18 03:06:50.874 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:06:50.884 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:06:50.884 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37442 150' command took 2 ms to send, 1320 ms to get response, and 1329 ms overall
17-03-18 03:06:50.884 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171076
17-03-18 03:06:50.884 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17108 mm
17-03-18 03:06:50.884 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:06:50.884 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:06:50.884 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 37372, sync = True, waitForSettling = False)
17-03-18 03:06:50.884 -07 000000462 INF: Z Motor: Moving to -0.171078 mm, started at -0.170593 mm, distance = -0.49 um
17-03-18 03:06:50.884 -07 000000462 INF: FPGA: Xmit ZDACW 37372\n [Z Motor]
17-03-18 03:06:50.884 -07 000000606 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 03:06:50.884 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:06:50.894 -07 000000462 INF: FPGA: 'ZDACW 37372' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:06:50.894 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:50.894 -07 000000461 INF: FPGA: Recv ZDACR 37372
17-03-18 03:06:50.904 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:50.904 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:50.904 -07 000000462 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-18 03:06:50.904 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:06:50.914 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:06:50.914 -07 000000606 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:50.914 -07 000000606 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:06:50.914 -07 000000606 INF: Y Motor: Moving 1339 steps-15
17-03-18 03:06:50.914 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:06:51.074 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:06:51.074 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:06:51.074 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:51.074 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:06:51.074 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:06:51.074 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:51.084 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:06:51.084 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-18 03:06:51.084 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:06:51.094 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:06:51.284 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 03:06:51.284 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 03:06:51.354 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:51.354 -07 000000579 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:06:51.364 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:06:51.364 -07 000000606 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:51.364 -07 000000606 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-18 03:06:51.364 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.215 mm/sec
17-03-18 03:06:51.544 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:51.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:51.944 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.989471,
17-03-18 03:06:52.314 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:52.314 -07 000000444 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:06:52.324 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:52.324 -07 000000606 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:52.344 -07 000000606 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:06:52.344 -07 000000606 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:06:52.354 -07 000000606 INF: Y Motor: Moved to 63.2241 after 1465 ms (table move)
17-03-18 03:06:52.354 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171078 mm (DAC = 37372)
17-03-18 03:06:52.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.354 -07 000000455 INF: FPGA: Recv ZSGSRD 35921
17-03-18 03:06:52.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:06:52.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.364 -07 000000561 INF: FPGA: Recv ZSGSRD 35915
17-03-18 03:06:52.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.374 -07 000000569 INF: FPGA: Recv ZSGSRD 35922
17-03-18 03:06:52.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.384 -07 000000512 INF: FPGA: Recv ZSGSRD 35918
17-03-18 03:06:52.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.394 -07 000000591 INF: FPGA: Recv ZSGSRD 35913
17-03-18 03:06:52.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.404 -07 000000590 INF: FPGA: Recv ZSGSRD 35925
17-03-18 03:06:52.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.414 -07 000000501 INF: FPGA: Recv ZSGSRD 35916
17-03-18 03:06:52.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.424 -07 000000569 INF: FPGA: Recv ZSGSRD 35920
17-03-18 03:06:52.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.434 -07 000000512 INF: FPGA: Recv ZSGSRD 35923
17-03-18 03:06:52.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.444 -07 000000502 INF: FPGA: Recv ZSGSRD 35925
17-03-18 03:06:52.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.454 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:52.454 -07 000000618 INF: FPGA: Recv ZPIEZORD 31797
17-03-18 03:06:52.464 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.464 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -9.1 V.
17-03-18 03:06:52.464 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35920 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35920 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35913 (-170.2 uncal um), Max = 35925 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:06:52.464 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35920, posNoise = 5, negNoise = 7
17-03-18 03:06:52.464 -07 000000610 INF: Z Motor: After move to -0.171078, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:52.464 -07 000000610 INF: Z Motor: Settle wait time = 1468 ms, measure time = 107 ms (allowed 150 ms), total time = 1575 ms
17-03-18 03:06:52.464 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:06:52.514 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-18 03:06:52.514 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:06:52.514 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.171081052143189. ----------
17-03-18 03:06:52.514 -07 000000610 INF: Cycle	108	Tile	5	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:06:52.514 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37195, sync = True, waitForSettling = True)
17-03-18 03:06:52.514 -07 000000610 INF: Z Motor: Moving to -0.170268 mm, started at -0.171081 mm, distance = 0.81 um
17-03-18 03:06:52.514 -07 000000610 INF: FPGA: Xmit ZDACW 37195\n [Z Motor]
17-03-18 03:06:52.514 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 03:06:52.524 -07 000000610 INF: FPGA: 'ZDACW 37195' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:06:52.524 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:52.524 -07 000000430 INF: FPGA: Recv ZDACR 37195
17-03-18 03:06:52.534 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.534 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:06:52.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.684 -07 000000455 INF: FPGA: Recv ZSGSRD 35797
17-03-18 03:06:52.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:52.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.694 -07 000000502 INF: FPGA: Recv ZSGSRD 35800
17-03-18 03:06:52.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.704 -07 000000618 INF: FPGA: Recv ZSGSRD 35795
17-03-18 03:06:52.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.714 -07 000000512 INF: FPGA: Recv ZSGSRD 35791
17-03-18 03:06:52.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.724 -07 000000591 INF: FPGA: Recv ZSGSRD 35791
17-03-18 03:06:52.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.734 -07 000000444 INF: FPGA: Recv ZSGSRD 35799
17-03-18 03:06:52.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.744 -07 000000606 INF: FPGA: Recv ZSGSRD 35798
17-03-18 03:06:52.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.754 -07 000000579 INF: FPGA: Recv ZSGSRD 35792
17-03-18 03:06:52.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.764 -07 000000501 INF: FPGA: Recv ZSGSRD 35790
17-03-18 03:06:52.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:52.774 -07 000000569 INF: FPGA: Recv ZSGSRD 35795
17-03-18 03:06:52.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.784 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:52.784 -07 000000461 INF: FPGA: Recv ZPIEZORD 31623
17-03-18 03:06:52.794 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:52.794 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -9.2 V.
17-03-18 03:06:52.794 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35795 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35795 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35790 (-169.4 uncal um), Max = 35800 (-169.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:06:52.794 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35795, posNoise = 5, negNoise = 5
17-03-18 03:06:52.794 -07 000000610 INF: Z Motor: After move to -0.170268, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:52.794 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:06:52.794 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:52.794 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:52.794 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:52.794 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:06:52.794 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:06:52.794 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:52.794 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:06:52.794 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:06:52.794 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:06:52.794 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:06:52.794 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:06:52.794 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:06:52.794 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:06:52.794 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:06:52.794 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:06:52.794 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:06:52.804 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:06:52.804 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:06:52.804 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:06:52.804 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:06:52.814 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37372 150\n [Camera]
17-03-18 03:06:53.014 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:06:53.414 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:06:53.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:06:53.414 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:53.414 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:06:53.414 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:06:53.414 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:53.424 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:53.424 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:06:53.424 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:53.424 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:06:53.604 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37372 787
17-03-18 03:06:53.754 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:06:53.804 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:06:53.804 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:06:53.804 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:53.804 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:06:53.804 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:06:53.804 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:06:53.804 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:53.814 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:06:53.814 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-18 03:06:53.814 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:06:53.944 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:06:53.944 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:06:53.944 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:53.954 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:06:53.954 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:06:53.954 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:53.954 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:53.954 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:06:53.954 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:53.954 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 03:06:54.134 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:06:54.144 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:06:54.144 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37372 150' command took 2 ms to send, 1320 ms to get response, and 1329 ms overall
17-03-18 03:06:54.144 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170741
17-03-18 03:06:54.144 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17074 mm
17-03-18 03:06:54.144 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:06:54.144 -07 000000467 INF: Z Motor: Entering MoveAbsStepped (DAC = 37298, sync = True, waitForSettling = False)
17-03-18 03:06:54.144 -07 000000467 INF: Z Motor: Moving to -0.170739 mm, started at -0.170278 mm, distance = -0.46 um
17-03-18 03:06:54.144 -07 000000467 INF: FPGA: Xmit ZDACW 37298\n [Z Motor]
17-03-18 03:06:54.144 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:06:54.144 -07 000000462 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 03:06:54.144 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:06:54.154 -07 000000467 INF: FPGA: 'ZDACW 37298' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:06:54.154 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:54.154 -07 000000501 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:06:54.164 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:06:54.164 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:54.164 -07 000000462 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:06:54.164 -07 000000462 INF: Y Motor: Moving 1342 steps-17
17-03-18 03:06:54.164 -07 000000467 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:54.164 -07 000000455 INF: FPGA: Recv ZDACR 37298
17-03-18 03:06:54.174 -07 000000467 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:06:54.174 -07 000000467 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-18 03:06:54.174 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:06:54.324 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:06:54.324 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:06:54.324 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:54.334 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 03:06:54.334 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:06:54.334 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:54.334 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:06:54.334 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:06:54.334 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:06:54.344 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:06:54.544 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:06:54.544 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 03:06:54.594 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:54.604 -07 000000591 INF: FPGA: Recv YRDPOS 131188
17-03-18 03:06:54.604 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:06:54.604 -07 000000462 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:54.604 -07 000000462 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-18 03:06:54.604 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.161 mm/sec
17-03-18 03:06:55.554 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:55.554 -07 000000569 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:06:55.564 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.564 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:55.584 -07 000000462 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:06:55.584 -07 000000462 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:06:55.584 -07 000000462 INF: Y Motor: Moved to 64.0571 after 1439 ms (table move)
17-03-18 03:06:55.584 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170739 mm (DAC = 37298)
17-03-18 03:06:55.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.594 -07 000000629 INF: FPGA: Recv ZSGSRD 35869
17-03-18 03:06:55.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:06:55.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.594 -07 000000467 INF: FPGA: Recv ZSGSRD 35863
17-03-18 03:06:55.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:06:55.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.604 -07 000000444 INF: FPGA: Recv ZSGSRD 35873
17-03-18 03:06:55.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.614 -07 000000561 INF: FPGA: Recv ZSGSRD 35870
17-03-18 03:06:55.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.624 -07 000000444 INF: FPGA: Recv ZSGSRD 35868
17-03-18 03:06:55.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.634 -07 000000576 INF: FPGA: Recv ZSGSRD 35876
17-03-18 03:06:55.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.644 -07 000000444 INF: FPGA: Recv ZSGSRD 35868
17-03-18 03:06:55.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.654 -07 000000455 INF: FPGA: Recv ZSGSRD 35857
17-03-18 03:06:55.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.664 -07 000000579 INF: FPGA: Recv ZSGSRD 35862
17-03-18 03:06:55.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.674 -07 000000424 INF: FPGA: Recv ZSGSRD 35865
17-03-18 03:06:55.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.684 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:55.684 -07 000000561 INF: FPGA: Recv ZPIEZORD 31754
17-03-18 03:06:55.694 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.694 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -9.1 V.
17-03-18 03:06:55.694 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35867 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35868 (-169.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35857 (-169.8 uncal um), Max = 35876 (-169.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-18 03:06:55.694 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35867, posNoise = 9, negNoise = 10
17-03-18 03:06:55.694 -07 000000610 INF: Z Motor: After move to -0.170739, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:55.694 -07 000000610 INF: Z Motor: Settle wait time = 1442 ms, measure time = 103 ms (allowed 150 ms), total time = 1545 ms
17-03-18 03:06:55.694 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-18 03:06:55.744 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-18 03:06:55.744 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:06:55.744 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.170740568899675. ----------
17-03-18 03:06:55.744 -07 000000610 INF: Cycle	108	Tile	6	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:06:55.744 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37122, sync = True, waitForSettling = True)
17-03-18 03:06:55.744 -07 000000610 INF: Z Motor: Moving to -0.169934 mm, started at -0.170741 mm, distance = 0.81 um
17-03-18 03:06:55.744 -07 000000610 INF: FPGA: Xmit ZDACW 37122\n [Z Motor]
17-03-18 03:06:55.744 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:06:55.754 -07 000000610 INF: FPGA: 'ZDACW 37122' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:06:55.754 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:55.754 -07 000000576 INF: FPGA: Recv ZDACR 37122
17-03-18 03:06:55.764 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.764 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:06:55.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.914 -07 000000467 INF: FPGA: Recv ZSGSRD 35746
17-03-18 03:06:55.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:55.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.924 -07 000000455 INF: FPGA: Recv ZSGSRD 35744
17-03-18 03:06:55.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.934 -07 000000579 INF: FPGA: Recv ZSGSRD 35751
17-03-18 03:06:55.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.944 -07 000000606 INF: FPGA: Recv ZSGSRD 35745
17-03-18 03:06:55.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.954 -07 000000561 INF: FPGA: Recv ZSGSRD 35733
17-03-18 03:06:55.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.964 -07 000000618 INF: FPGA: Recv ZSGSRD 35745
17-03-18 03:06:55.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.974 -07 000000591 INF: FPGA: Recv ZSGSRD 35744
17-03-18 03:06:55.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.984 -07 000000569 INF: FPGA: Recv ZSGSRD 35742
17-03-18 03:06:55.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:55.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:55.994 -07 000000502 INF: FPGA: Recv ZSGSRD 35745
17-03-18 03:06:56.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:56.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:56.004 -07 000000501 INF: FPGA: Recv ZSGSRD 35742
17-03-18 03:06:56.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:56.014 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:56.014 -07 000000629 INF: FPGA: Recv ZPIEZORD 31563
17-03-18 03:06:56.024 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:56.024 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.664 V. Piezo Error = -9.2 V.
17-03-18 03:06:56.024 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35744 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35744 (-169.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35733 (-169.0 uncal um), Max = 35751 (-169.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-18 03:06:56.024 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35744, posNoise = 7, negNoise = 11
17-03-18 03:06:56.024 -07 000000610 INF: Z Motor: After move to -0.169934, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:56.024 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:06:56.024 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:56.024 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:56.024 -07 000000455 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:56.024 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:56.024 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:06:56.024 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:06:56.024 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:06:56.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:06:56.024 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:06:56.024 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:06:56.024 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:06:56.024 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:06:56.024 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:06:56.024 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:06:56.034 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:06:56.034 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:06:56.044 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 03:06:56.044 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-18 03:06:56.044 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 03:06:56.044 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:06:56.044 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37298 150\n [Camera]
17-03-18 03:06:56.244 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:06:56.544 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:06:56.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:06:56.654 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:06:56.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:06:56.654 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:56.654 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:56.654 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:06:56.654 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:06:56.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:06:56.654 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:56.654 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:56.654 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:06:56.844 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37298 787
17-03-18 03:06:56.994 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:06:57.024 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:06:57.034 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:06:57.034 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:57.034 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:06:57.034 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:06:57.034 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:57.034 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:06:57.034 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:06:57.034 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:06:57.044 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 03:06:57.184 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:06:57.184 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:06:57.184 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:06:57.184 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:06:57.184 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:06:57.184 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:06:57.184 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:06:57.194 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:06:57.324 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:06:57.324 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:06:57.334 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.986717,
17-03-18 03:06:57.374 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:06:57.374 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:06:57.374 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37298 150' command took 2 ms to send, 1318 ms to get response, and 1329 ms overall
17-03-18 03:06:57.384 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:06:57.384 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169950390806239. ------
17-03-18 03:06:57.384 -07 000000591 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:06:57.384 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17639 mm
17-03-18 03:06:57.384 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:06:57.384 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:06:57.384 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 38532, sync = True, waitForSettling = False)
17-03-18 03:06:57.384 -07 000000629 INF: Z Motor: Moving to -0.176388 mm, started at -0.169950 mm, distance = -6.44 um
17-03-18 03:06:57.384 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 03:06:57.384 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:06:57.394 -07 000000591 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:06:57.394 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:57.394 -07 000000430 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:06:57.404 -07 000000629 INF: FPGA: Xmit ZDACW 38532\n [Z Motor]
17-03-18 03:06:57.404 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:06:57.404 -07 000000561 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:57.404 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:06:57.404 -07 000000561 INF: Y Motor: Moving 1337 steps-12
17-03-18 03:06:57.404 -07 000000501 INF: FPGA: Recv ZDACW
17-03-18 03:06:57.414 -07 000000591 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:06:57.414 -07 000000629 INF: FPGA: 'ZDACW 38532' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-18 03:06:57.424 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:06:57.434 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:57.434 -07 000000430 INF: FPGA: Recv ZDACR 38532
17-03-18 03:06:57.444 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:06:57.444 -07 000000629 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-18 03:06:57.574 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-18 03:06:57.574 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:06:57.574 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:57.584 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:06:57.584 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:06:57.614 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:06:57.614 -07 000000591 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:06:57.704 -07 000000606 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:06:57.704 -07 000000606 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:06:57.704 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:57.704 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:06:57.714 -07 000000606 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-18 03:06:57.804 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 03:06:57.804 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-18 03:06:57.844 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:57.844 -07 000000618 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:06:57.854 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:06:57.854 -07 000000561 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:57.854 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:06:57.854 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-18 03:06:58.804 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:06:58.804 -07 000000618 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:06:58.814 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:58.814 -07 000000561 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:06:58.834 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:06:58.834 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:06:58.834 -07 000000561 INF: Y Motor: Moved to 64.8789 after 1452 ms (table move)
17-03-18 03:06:58.844 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176388 mm (DAC = 38532)
17-03-18 03:06:58.844 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.844 -07 000000455 INF: FPGA: Recv ZSGSRD 36748
17-03-18 03:06:58.854 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:06:58.854 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.854 -07 000000561 INF: FPGA: Recv ZSGSRD 36741
17-03-18 03:06:58.864 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.864 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.864 -07 000000455 INF: FPGA: Recv ZSGSRD 36749
17-03-18 03:06:58.874 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.874 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.874 -07 000000618 INF: FPGA: Recv ZSGSRD 36753
17-03-18 03:06:58.884 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.884 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.884 -07 000000455 INF: FPGA: Recv ZSGSRD 36753
17-03-18 03:06:58.894 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.894 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.894 -07 000000424 INF: FPGA: Recv ZSGSRD 36744
17-03-18 03:06:58.904 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.904 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.904 -07 000000462 INF: FPGA: Recv ZSGSRD 36743
17-03-18 03:06:58.914 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.914 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.914 -07 000000626 INF: FPGA: Recv ZSGSRD 36743
17-03-18 03:06:58.924 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.924 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.924 -07 000000561 INF: FPGA: Recv ZSGSRD 36740
17-03-18 03:06:58.934 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.934 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:58.934 -07 000000502 INF: FPGA: Recv ZSGSRD 36747
17-03-18 03:06:58.944 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.944 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:58.944 -07 000000501 INF: FPGA: Recv ZPIEZORD 32921
17-03-18 03:06:58.954 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:58.954 -07 000000512 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.5 V.
17-03-18 03:06:58.954 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36746 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36746 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36740 (-175.5 uncal um), Max = 36753 (-175.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:06:58.954 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36746, posNoise = 7, negNoise = 6
17-03-18 03:06:58.954 -07 000000512 INF: Z Motor: After move to -0.176388, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:06:58.954 -07 000000512 INF: Z Motor: Settle wait time = 1456 ms, measure time = 107 ms (allowed 150 ms), total time = 1563 ms
17-03-18 03:06:58.954 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:06:59.004 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-18 03:06:59.004 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:06:59.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:06:59.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:06:59.004 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:06:59.004 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:06:59.004 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:06:59.004 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:06:59.004 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:06:59.004 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:06:59.014 -07 000000590 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:06:59.014 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:06:59.014 -07 000000590 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:06:59.014 -07 000000590 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:06:59.024 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:06:59.064 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-18 03:06:59.364 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 342
17-03-18 03:06:59.364 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342
17-03-18 03:06:59.374 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:06:59.374 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:06:59.404 -07 000000424 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:06:59.404 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-18 03:06:59.404 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:06:59.484 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:06:59.484 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:06:59.484 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-18 03:06:59.484 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:06:59.504 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:06:59.504 -07 000000444 INF: Autofocus start
17-03-18 03:06:59.504 -07 000000444 INF: MeasureProfile start
17-03-18 03:06:59.504 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:06:59.514 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:06:59.514 -07 000000629 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:06:59.514 -07 000000444 INF: MeasureProfile done
17-03-18 03:06:59.514 -07 000000444 INF: X=48  Z correction [um]=0.1739867
17-03-18 03:06:59.514 -07 000000444 INF: Autofocus finished
17-03-18 03:06:59.714 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:06:59.714 -07 000000629 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:06:59.714 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176387451372283. ----------
17-03-18 03:06:59.714 -07 000000610 INF: Cycle	108	Tile	7	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:06:59.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37083, sync = True, waitForSettling = True)
17-03-18 03:06:59.724 -07 000000610 INF: Z Motor: Moving to -0.169755 mm, started at -0.176387 mm, distance = 6.63 um
17-03-18 03:06:59.724 -07 000000610 INF: FPGA: Xmit ZDACW 37083\n [Z Motor]
17-03-18 03:06:59.724 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:06:59.734 -07 000000610 INF: FPGA: 'ZDACW 37083' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:59.734 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:06:59.734 -07 000000576 INF: FPGA: Recv ZDACR 37083
17-03-18 03:06:59.744 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:59.744 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:06:59.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.894 -07 000000618 INF: FPGA: Recv ZSGSRD 35713
17-03-18 03:06:59.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:06:59.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.904 -07 000000591 INF: FPGA: Recv ZSGSRD 35718
17-03-18 03:06:59.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:59.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.914 -07 000000455 INF: FPGA: Recv ZSGSRD 35716
17-03-18 03:06:59.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:59.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.924 -07 000000462 INF: FPGA: Recv ZSGSRD 35715
17-03-18 03:06:59.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:59.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.934 -07 000000502 INF: FPGA: Recv ZSGSRD 35719
17-03-18 03:06:59.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:59.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.944 -07 000000501 INF: FPGA: Recv ZSGSRD 35718
17-03-18 03:06:59.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:06:59.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.954 -07 000000590 INF: FPGA: Recv ZSGSRD 35716
17-03-18 03:06:59.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:59.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.964 -07 000000424 INF: FPGA: Recv ZSGSRD 35716
17-03-18 03:06:59.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:59.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.974 -07 000000579 INF: FPGA: Recv ZSGSRD 35716
17-03-18 03:06:59.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:59.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:06:59.984 -07 000000430 INF: FPGA: Recv ZSGSRD 35714
17-03-18 03:06:59.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:06:59.994 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:06:59.994 -07 000000629 INF: FPGA: Recv ZPIEZORD 31518
17-03-18 03:07:00.004 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:00.004 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -9.3 V.
17-03-18 03:07:00.004 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35716 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35716 (-168.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35713 (-168.9 uncal um), Max = 35719 (-168.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:07:00.004 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35716, posNoise = 3, negNoise = 3
17-03-18 03:07:00.004 -07 000000610 INF: Z Motor: After move to -0.169755, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:00.004 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:07:00.004 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:00.004 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:00.004 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:00.004 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:00.004 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:00.004 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:00.004 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:00.004 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:07:00.004 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:00.004 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:07:00.004 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:00.004 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:00.004 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:07:00.004 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:00.004 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:00.004 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:00.014 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:07:00.014 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:07:00.014 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:07:00.014 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:07:00.024 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37259 150\n [Camera]
17-03-18 03:07:00.224 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:00.624 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:00.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:00.624 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:00.624 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:00.624 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:00.624 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:00.624 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:00.624 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:07:00.634 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:00.634 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:07:00.814 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37259 787
17-03-18 03:07:00.964 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:01.004 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-18 03:07:01.004 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 03:07:01.004 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:07:01.004 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:01.004 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 03:07:01.004 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:01.004 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:01.004 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:01.004 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:07:01.014 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:07:01.154 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:01.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:01.164 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:01.164 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:01.164 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:01.164 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:01.284 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:01.284 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 03:07:01.284 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:01.284 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:07:01.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:07:01.354 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:01.354 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37259 150' command took 2 ms to send, 1321 ms to get response, and 1330 ms overall
17-03-18 03:07:01.354 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170195
17-03-18 03:07:01.354 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17019 mm
17-03-18 03:07:01.354 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:01.354 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37179, sync = True, waitForSettling = False)
17-03-18 03:07:01.354 -07 000000618 INF: Z Motor: Moving to -0.170195 mm, started at -0.169771 mm, distance = -0.42 um
17-03-18 03:07:01.354 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:07:01.354 -07 000000455 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 03:07:01.354 -07 000000618 INF: FPGA: Xmit ZDACW 37179\n [Z Motor]
17-03-18 03:07:01.364 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:01.364 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 03:07:01.364 -07 000000618 INF: FPGA: 'ZDACW 37179' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:07:01.364 -07 000000569 INF: FPGA: Recv YRDPOS 132873
17-03-18 03:07:01.374 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:07:01.374 -07 000000455 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:01.374 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:01.374 -07 000000462 INF: FPGA: Recv ZDACR 37179
17-03-18 03:07:01.374 -07 000000455 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:01.374 -07 000000455 INF: Y Motor: Moving 1349 steps-28
17-03-18 03:07:01.384 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:01.384 -07 000000618 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 03:07:01.384 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:01.544 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:01.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:01.664 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:07:01.664 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:07:01.664 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:01.664 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:07:01.664 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:07:01.664 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:01.674 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:01.674 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:01.674 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 03:07:01.684 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-18 03:07:01.754 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 03:07:01.754 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 383 ms overall
17-03-18 03:07:01.804 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:01.804 -07 000000618 INF: FPGA: Recv YRDPOS 134582
17-03-18 03:07:01.814 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:01.814 -07 000000455 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:01.814 -07 000000455 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:07:01.814 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.203 mm/sec
17-03-18 03:07:02.694 -07 000000579 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.981281,
17-03-18 03:07:02.764 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:02.764 -07 000000590 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:07:02.774 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:02.774 -07 000000455 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:02.804 -07 000000455 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:02.804 -07 000000455 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:07:02.804 -07 000000455 INF: Y Motor: Moved to 65.7144 after 1443 ms (table move)
17-03-18 03:07:02.804 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170195 mm (DAC = 37179)
17-03-18 03:07:02.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.804 -07 000000502 INF: FPGA: Recv ZSGSRD 35787
17-03-18 03:07:02.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:02.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.814 -07 000000576 INF: FPGA: Recv ZSGSRD 35789
17-03-18 03:07:02.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.824 -07 000000606 INF: FPGA: Recv ZSGSRD 35789
17-03-18 03:07:02.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.834 -07 000000579 INF: FPGA: Recv ZSGSRD 35787
17-03-18 03:07:02.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.844 -07 000000626 INF: FPGA: Recv ZSGSRD 35783
17-03-18 03:07:02.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.854 -07 000000618 INF: FPGA: Recv ZSGSRD 35779
17-03-18 03:07:02.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.864 -07 000000512 INF: FPGA: Recv ZSGSRD 35781
17-03-18 03:07:02.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.874 -07 000000501 INF: FPGA: Recv ZSGSRD 35782
17-03-18 03:07:02.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.884 -07 000000461 INF: FPGA: Recv ZSGSRD 35785
17-03-18 03:07:02.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:02.894 -07 000000455 INF: FPGA: Recv ZSGSRD 35791
17-03-18 03:07:02.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:02.904 -07 000000502 INF: FPGA: Recv ZPIEZORD 31640
17-03-18 03:07:02.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.914 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -9.1 V.
17-03-18 03:07:02.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35785 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35786 (-169.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35779 (-169.3 uncal um), Max = 35791 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:07:02.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35785, posNoise = 6, negNoise = 6
17-03-18 03:07:02.914 -07 000000610 INF: Z Motor: After move to -0.170195, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:02.914 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-18 03:07:02.914 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:02.964 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 03:07:02.964 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:02.964 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.170213783504051. ----------
17-03-18 03:07:02.964 -07 000000610 INF: Cycle	108	Tile	8	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:02.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37002, sync = True, waitForSettling = True)
17-03-18 03:07:02.964 -07 000000610 INF: Z Motor: Moving to -0.169384 mm, started at -0.170214 mm, distance = 0.83 um
17-03-18 03:07:02.964 -07 000000610 INF: FPGA: Xmit ZDACW 37002\n [Z Motor]
17-03-18 03:07:02.964 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:07:02.974 -07 000000610 INF: FPGA: 'ZDACW 37002' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:02.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:02.974 -07 000000569 INF: FPGA: Recv ZDACR 37002
17-03-18 03:07:02.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:02.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:03.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.134 -07 000000579 INF: FPGA: Recv ZSGSRD 35657
17-03-18 03:07:03.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:03.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.144 -07 000000461 INF: FPGA: Recv ZSGSRD 35661
17-03-18 03:07:03.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.154 -07 000000629 INF: FPGA: Recv ZSGSRD 35657
17-03-18 03:07:03.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.164 -07 000000467 INF: FPGA: Recv ZSGSRD 35658
17-03-18 03:07:03.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.174 -07 000000626 INF: FPGA: Recv ZSGSRD 35651
17-03-18 03:07:03.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.184 -07 000000424 INF: FPGA: Recv ZSGSRD 35659
17-03-18 03:07:03.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.194 -07 000000626 INF: FPGA: Recv ZSGSRD 35662
17-03-18 03:07:03.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.204 -07 000000424 INF: FPGA: Recv ZSGSRD 35654
17-03-18 03:07:03.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.214 -07 000000626 INF: FPGA: Recv ZSGSRD 35660
17-03-18 03:07:03.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:03.224 -07 000000501 INF: FPGA: Recv ZSGSRD 35654
17-03-18 03:07:03.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:03.234 -07 000000455 INF: FPGA: Recv ZPIEZORD 31475
17-03-18 03:07:03.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:03.244 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.2 V.
17-03-18 03:07:03.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35657 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35658 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35651 (-168.5 uncal um), Max = 35662 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:07:03.244 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35657, posNoise = 5, negNoise = 6
17-03-18 03:07:03.244 -07 000000610 INF: Z Motor: After move to -0.169384, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:03.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:07:03.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:03.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:03.244 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:03.244 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:03.244 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:03.244 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:03.244 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:07:03.244 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:03.244 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:03.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:03.244 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:03.244 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:03.244 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:03.244 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:03.254 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:07:03.254 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:03.254 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:07:03.254 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:07:03.264 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 03:07:03.264 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:07:03.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37179 150\n [Camera]
17-03-18 03:07:03.464 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:03.864 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:03.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:03.874 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:03.874 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:03.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:03.874 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:03.874 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:03.874 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:07:03.874 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:03.874 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 03:07:04.064 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37179 787
17-03-18 03:07:04.204 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:04.244 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 371 ms.
17-03-18 03:07:04.244 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 03:07:04.244 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:04.244 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:07:04.244 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:07:04.244 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:04.254 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:04.254 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:07:04.254 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:04.264 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:07:04.404 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1131
17-03-18 03:07:04.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1131
17-03-18 03:07:04.404 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:04.404 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:04.404 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:07:04.404 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1131
17-03-18 03:07:04.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1131
17-03-18 03:07:04.404 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:04.404 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:04.404 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:07:04.594 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:07:04.594 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:04.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37179 150' command took 2 ms to send, 1325 ms to get response, and 1329 ms overall
17-03-18 03:07:04.594 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.169870
17-03-18 03:07:04.594 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.16987 mm
17-03-18 03:07:04.594 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:04.604 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:07:04.604 -07 000000561 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 03:07:04.604 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 37108, sync = True, waitForSettling = False)
17-03-18 03:07:04.604 -07 000000606 INF: Z Motor: Moving to -0.169870 mm, started at -0.169391 mm, distance = -0.48 um
17-03-18 03:07:04.604 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:04.604 -07 000000590 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:07:04.614 -07 000000561 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:04.614 -07 000000561 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:04.614 -07 000000561 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:04.614 -07 000000561 INF: Y Motor: Moving 1341 steps-18
17-03-18 03:07:04.614 -07 000000606 INF: FPGA: Xmit ZDACW 37108\n [Z Motor]
17-03-18 03:07:04.614 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:07:04.624 -07 000000606 INF: FPGA: 'ZDACW 37108' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:04.624 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:04.624 -07 000000424 INF: FPGA: Recv ZDACR 37108
17-03-18 03:07:04.634 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:04.634 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:04.634 -07 000000606 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-18 03:07:04.784 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:07:04.784 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:07:04.784 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:04.784 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:07:04.784 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:07:04.784 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:04.794 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:04.794 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:07:04.794 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:04.794 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:07:05.004 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-18 03:07:05.004 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-18 03:07:05.054 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:05.054 -07 000000455 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:07:05.064 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:07:05.064 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:05.064 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:07:05.064 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.122 mm/sec
17-03-18 03:07:06.014 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:06.014 -07 000000618 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:07:06.024 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:06.024 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:06.054 -07 000000561 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:06.054 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:06.054 -07 000000561 INF: Y Motor: Moved to 66.5391 after 1452 ms (table move)
17-03-18 03:07:06.054 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169870 mm (DAC = 37108)
17-03-18 03:07:06.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.054 -07 000000576 INF: FPGA: Recv ZSGSRD 35732
17-03-18 03:07:06.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:06.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.064 -07 000000606 INF: FPGA: Recv ZSGSRD 35733
17-03-18 03:07:06.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.074 -07 000000455 INF: FPGA: Recv ZSGSRD 35734
17-03-18 03:07:06.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.084 -07 000000462 INF: FPGA: Recv ZSGSRD 35736
17-03-18 03:07:06.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.094 -07 000000569 INF: FPGA: Recv ZSGSRD 35732
17-03-18 03:07:06.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.104 -07 000000576 INF: FPGA: Recv ZSGSRD 35737
17-03-18 03:07:06.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.114 -07 000000444 INF: FPGA: Recv ZSGSRD 35730
17-03-18 03:07:06.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.124 -07 000000430 INF: FPGA: Recv ZSGSRD 35729
17-03-18 03:07:06.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.134 -07 000000626 INF: FPGA: Recv ZSGSRD 35734
17-03-18 03:07:06.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.144 -07 000000606 INF: FPGA: Recv ZSGSRD 35738
17-03-18 03:07:06.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.154 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:06.154 -07 000000512 INF: FPGA: Recv ZPIEZORD 31564
17-03-18 03:07:06.164 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.164 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -9.2 V.
17-03-18 03:07:06.164 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35734 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35734 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35729 (-169.0 uncal um), Max = 35738 (-169.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:07:06.164 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35734, posNoise = 4, negNoise = 5
17-03-18 03:07:06.164 -07 000000610 INF: Z Motor: After move to -0.169870, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:06.164 -07 000000610 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms
17-03-18 03:07:06.164 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:06.214 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 03:07:06.214 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:06.214 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.169886148684821. ----------
17-03-18 03:07:06.214 -07 000000610 INF: Cycle	108	Tile	9	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:06.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36931, sync = True, waitForSettling = True)
17-03-18 03:07:06.214 -07 000000610 INF: Z Motor: Moving to -0.169059 mm, started at -0.169886 mm, distance = 0.83 um
17-03-18 03:07:06.214 -07 000000610 INF: FPGA: Xmit ZDACW 36931\n [Z Motor]
17-03-18 03:07:06.214 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:07:06.224 -07 000000610 INF: FPGA: 'ZDACW 36931' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:06.224 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:06.224 -07 000000430 INF: FPGA: Recv ZDACR 36931
17-03-18 03:07:06.234 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.234 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:06.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.384 -07 000000579 INF: FPGA: Recv ZSGSRD 35607
17-03-18 03:07:06.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.394 -07 000000591 INF: FPGA: Recv ZSGSRD 35613
17-03-18 03:07:06.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.404 -07 000000512 INF: FPGA: Recv ZSGSRD 35604
17-03-18 03:07:06.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.414 -07 000000501 INF: FPGA: Recv ZSGSRD 35606
17-03-18 03:07:06.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.424 -07 000000629 INF: FPGA: Recv ZSGSRD 35608
17-03-18 03:07:06.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.434 -07 000000462 INF: FPGA: Recv ZSGSRD 35601
17-03-18 03:07:06.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.444 -07 000000444 INF: FPGA: Recv ZSGSRD 35603
17-03-18 03:07:06.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.454 -07 000000576 INF: FPGA: Recv ZSGSRD 35604
17-03-18 03:07:06.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.464 -07 000000591 INF: FPGA: Recv ZSGSRD 35613
17-03-18 03:07:06.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:06.474 -07 000000618 INF: FPGA: Recv ZSGSRD 35607
17-03-18 03:07:06.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.484 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:06.484 -07 000000502 INF: FPGA: Recv ZPIEZORD 31393
17-03-18 03:07:06.494 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:06.494 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.3 V.
17-03-18 03:07:06.494 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35607 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35606 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35601 (-168.2 uncal um), Max = 35613 (-168.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:07:06.494 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35607, posNoise = 6, negNoise = 6
17-03-18 03:07:06.494 -07 000000610 INF: Z Motor: After move to -0.169059, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:06.494 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:07:06.494 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:06.494 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:06.494 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:06.494 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:06.494 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:06.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:06.494 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:06.494 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:06.494 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:07:06.494 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:06.494 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:06.494 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:06.504 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:06.504 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:06.504 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:07:06.504 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:06.514 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:07:06.514 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:07:06.514 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:07:06.514 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:07:06.514 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37108 150\n [Camera]
17-03-18 03:07:06.544 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:06.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:06.714 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:07.114 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:07.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:07.114 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:07.114 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:07.114 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:07:07.114 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:07.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:07.114 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:07.114 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:07.114 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:07:07.394 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37108 787
17-03-18 03:07:07.454 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:07.504 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 03:07:07.504 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:07:07.504 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:07.504 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 03:07:07.504 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:07:07.504 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:07.504 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:07.504 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:07.504 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:07:07.514 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:07:07.654 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:07.654 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:07.654 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:07.654 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:07.654 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:07.654 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:07.654 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:07.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:07:07.664 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:07.664 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-18 03:07:07.844 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:07:07.844 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:07.844 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37108 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-18 03:07:07.844 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169903
17-03-18 03:07:07.844 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16990 mm
17-03-18 03:07:07.844 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:07.844 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:07:07.844 -07 000000455 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-18 03:07:07.844 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:07.844 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 37115, sync = True, waitForSettling = False)
17-03-18 03:07:07.844 -07 000000461 INF: Z Motor: Moving to -0.169902 mm, started at -0.169070 mm, distance = -0.83 um
17-03-18 03:07:07.854 -07 000000461 INF: FPGA: Xmit ZDACW 37115\n [Z Motor]
17-03-18 03:07:07.854 -07 000000444 INF: FPGA: Recv YRDPOS 136273
17-03-18 03:07:07.854 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-18 03:07:07.854 -07 000000455 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:07.854 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 03:07:07.854 -07 000000455 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:07.854 -07 000000455 INF: Y Motor: Moving 1349 steps-28
17-03-18 03:07:07.864 -07 000000461 INF: FPGA: 'ZDACW 37115' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:07:07.864 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:07.864 -07 000000579 INF: FPGA: Recv ZDACR 37115
17-03-18 03:07:07.874 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:07.874 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:07.874 -07 000000461 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 03:07:08.034 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:07:08.034 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:07:08.034 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:08.034 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:07:08.034 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:07:08.034 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:08.044 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:08.044 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:07:08.044 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:08.054 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.997626,
17-03-18 03:07:08.054 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:07:08.244 -07 000000467 INF: FPGA: Recv YMVTILE
17-03-18 03:07:08.244 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-18 03:07:08.294 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:08.294 -07 000000424 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:07:08.304 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:08.304 -07 000000455 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:08.304 -07 000000455 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 03:07:08.304 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.157 mm/sec
17-03-18 03:07:09.254 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:09.254 -07 000000618 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:07:09.264 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.264 -07 000000455 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:09.284 -07 000000455 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:09.284 -07 000000455 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:09.284 -07 000000455 INF: Y Motor: Moved to 67.3721 after 1441 ms (table move)
17-03-18 03:07:09.294 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169902 mm (DAC = 37115)
17-03-18 03:07:09.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.294 -07 000000502 INF: FPGA: Recv ZSGSRD 35738
17-03-18 03:07:09.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:07:09.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.304 -07 000000424 INF: FPGA: Recv ZSGSRD 35735
17-03-18 03:07:09.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.314 -07 000000512 INF: FPGA: Recv ZSGSRD 35743
17-03-18 03:07:09.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.324 -07 000000462 INF: FPGA: Recv ZSGSRD 35740
17-03-18 03:07:09.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.334 -07 000000501 INF: FPGA: Recv ZSGSRD 35737
17-03-18 03:07:09.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.344 -07 000000561 INF: FPGA: Recv ZSGSRD 35743
17-03-18 03:07:09.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.354 -07 000000461 INF: FPGA: Recv ZSGSRD 35736
17-03-18 03:07:09.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.364 -07 000000629 INF: FPGA: Recv ZSGSRD 35737
17-03-18 03:07:09.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.374 -07 000000430 INF: FPGA: Recv ZSGSRD 35743
17-03-18 03:07:09.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.384 -07 000000455 INF: FPGA: Recv ZSGSRD 35736
17-03-18 03:07:09.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.394 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:09.394 -07 000000561 INF: FPGA: Recv ZPIEZORD 31597
17-03-18 03:07:09.404 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.404 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.663 V. Piezo Error = -9.1 V.
17-03-18 03:07:09.404 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.9 um, Read 10 ADC samples: Avg = 35739 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35738 (-169.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35735 (-169.0 uncal um), Max = 35743 (-169.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:07:09.404 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35739, posNoise = 4, negNoise = 4
17-03-18 03:07:09.404 -07 000000610 INF: Z Motor: After move to -0.169902, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:09.404 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 109 ms (allowed 150 ms), total time = 1552 ms
17-03-18 03:07:09.404 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:09.454 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-18 03:07:09.454 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:09.454 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.16991826974553. ----------
17-03-18 03:07:09.454 -07 000000610 INF: Cycle	108	Tile	10	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:09.454 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36939, sync = True, waitForSettling = True)
17-03-18 03:07:09.454 -07 000000610 INF: Z Motor: Moving to -0.169096 mm, started at -0.169918 mm, distance = 0.82 um
17-03-18 03:07:09.454 -07 000000610 INF: FPGA: Xmit ZDACW 36939\n [Z Motor]
17-03-18 03:07:09.454 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 03:07:09.464 -07 000000610 INF: FPGA: 'ZDACW 36939' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:09.464 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:09.464 -07 000000512 INF: FPGA: Recv ZDACR 36939
17-03-18 03:07:09.474 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.474 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:09.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.624 -07 000000569 INF: FPGA: Recv ZSGSRD 35614
17-03-18 03:07:09.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:09.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.634 -07 000000606 INF: FPGA: Recv ZSGSRD 35615
17-03-18 03:07:09.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.644 -07 000000502 INF: FPGA: Recv ZSGSRD 35612
17-03-18 03:07:09.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.654 -07 000000462 INF: FPGA: Recv ZSGSRD 35611
17-03-18 03:07:09.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.664 -07 000000444 INF: FPGA: Recv ZSGSRD 35613
17-03-18 03:07:09.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.674 -07 000000467 INF: FPGA: Recv ZSGSRD 35609
17-03-18 03:07:09.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.684 -07 000000424 INF: FPGA: Recv ZSGSRD 35604
17-03-18 03:07:09.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.694 -07 000000576 INF: FPGA: Recv ZSGSRD 35613
17-03-18 03:07:09.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.704 -07 000000626 INF: FPGA: Recv ZSGSRD 35609
17-03-18 03:07:09.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:09.714 -07 000000512 INF: FPGA: Recv ZSGSRD 35617
17-03-18 03:07:09.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.724 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:09.724 -07 000000430 INF: FPGA: Recv ZPIEZORD 31428
17-03-18 03:07:09.734 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:09.734 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.2 V.
17-03-18 03:07:09.734 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35612 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35612 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35604 (-168.2 uncal um), Max = 35617 (-168.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:07:09.734 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35612, posNoise = 5, negNoise = 8
17-03-18 03:07:09.734 -07 000000610 INF: Z Motor: After move to -0.169096, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:09.734 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:07:09.734 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:09.734 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:09.734 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:09.734 -07 000000629 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:09.734 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:09.734 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:09.734 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:09.734 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:09.734 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:09.734 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:09.734 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:09.734 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:09.744 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:07:09.744 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:09.744 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:09.744 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:09.744 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:07:09.744 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-18 03:07:09.754 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:07:09.754 -07 000000579 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:07:09.754 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 37115 150\n [Camera]
17-03-18 03:07:09.954 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:10.354 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:10.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:10.354 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:10.354 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:10.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:10.354 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:10.354 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:10.354 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 03:07:10.364 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:10.364 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:07:10.544 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37115 787
17-03-18 03:07:10.694 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:10.734 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 03:07:10.734 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:07:10.734 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:10.734 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:10.734 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:07:10.734 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:07:10.734 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:10.744 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:10.744 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:07:10.744 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:07:10.894 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:10.894 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:10.894 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:10.894 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:10.894 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:07:10.894 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:10.894 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:10.894 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:10.894 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:10.894 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:07:11.084 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:07:11.084 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:11.084 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 37115 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-18 03:07:11.084 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:07:11.084 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169102394803526. ------
17-03-18 03:07:11.084 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:11.084 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17540 mm
17-03-18 03:07:11.084 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:11.094 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:11.094 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:07:11.094 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:07:11.094 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 38315, sync = True, waitForSettling = False)
17-03-18 03:07:11.094 -07 000000591 INF: Z Motor: Moving to -0.175395 mm, started at -0.169102 mm, distance = -6.29 um
17-03-18 03:07:11.094 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:07:11.094 -07 000000606 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 03:07:11.104 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:11.104 -07 000000626 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:07:11.114 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:07:11.114 -07 000000606 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:11.114 -07 000000606 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:11.114 -07 000000606 INF: Y Motor: Moving 1345 steps-22
17-03-18 03:07:11.114 -07 000000591 INF: FPGA: Xmit ZDACW 38315\n [Z Motor]
17-03-18 03:07:11.114 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 03:07:11.124 -07 000000591 INF: FPGA: 'ZDACW 38315' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 03:07:11.124 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:11.134 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:11.134 -07 000000462 INF: FPGA: Recv ZDACR 38315
17-03-18 03:07:11.144 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:11.144 -07 000000591 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 03:07:11.274 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:07:11.274 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:07:11.274 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:11.274 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:07:11.274 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:07:11.274 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:11.274 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:11.274 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:11.274 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:07:11.284 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:07:11.294 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:07:11.294 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-18 03:07:11.504 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 03:07:11.504 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 03:07:11.544 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:11.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:11.544 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:11.554 -07 000000455 INF: FPGA: Recv YRDPOS 139684
17-03-18 03:07:11.554 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:11.554 -07 000000606 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:11.554 -07 000000606 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:07:11.554 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.841 mm, average velocity = 2.161 mm/sec
17-03-18 03:07:12.504 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:12.504 -07 000000591 INF: FPGA: Recv YRDPOS 139685
17-03-18 03:07:12.514 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:12.514 -07 000000606 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:12.534 -07 000000606 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:12.534 -07 000000606 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:07:12.534 -07 000000606 INF: Y Motor: Moved to 68.2056 after 1443 ms (table move)
17-03-18 03:07:12.544 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175395 mm (DAC = 38315)
17-03-18 03:07:12.544 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.544 -07 000000461 INF: FPGA: Recv ZSGSRD 36587
17-03-18 03:07:12.554 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:07:12.554 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.554 -07 000000579 INF: FPGA: Recv ZSGSRD 36592
17-03-18 03:07:12.564 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:12.564 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.564 -07 000000430 INF: FPGA: Recv ZSGSRD 36596
17-03-18 03:07:12.574 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:12.574 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.574 -07 000000444 INF: FPGA: Recv ZSGSRD 36593
17-03-18 03:07:12.584 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:12.584 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.584 -07 000000606 INF: FPGA: Recv ZSGSRD 36597
17-03-18 03:07:12.594 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:12.594 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.594 -07 000000455 INF: FPGA: Recv ZSGSRD 36587
17-03-18 03:07:12.604 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:12.604 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.604 -07 000000444 INF: FPGA: Recv ZSGSRD 36597
17-03-18 03:07:12.614 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:12.614 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.614 -07 000000606 INF: FPGA: Recv ZSGSRD 36599
17-03-18 03:07:12.624 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:12.624 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.624 -07 000000455 INF: FPGA: Recv ZSGSRD 36594
17-03-18 03:07:12.634 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:12.634 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:12.634 -07 000000569 INF: FPGA: Recv ZSGSRD 36595
17-03-18 03:07:12.644 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:12.644 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:12.644 -07 000000512 INF: FPGA: Recv ZPIEZORD 32713
17-03-18 03:07:12.654 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:12.654 -07 000000561 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.846 V. Piezo Error = -8.6 V.
17-03-18 03:07:12.654 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36594 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36594 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36587 (-174.5 uncal um), Max = 36599 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:07:12.654 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36594, posNoise = 5, negNoise = 7
17-03-18 03:07:12.654 -07 000000561 INF: Z Motor: After move to -0.175395, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:12.654 -07 000000561 INF: Z Motor: Settle wait time = 1447 ms, measure time = 109 ms (allowed 150 ms), total time = 1556 ms
17-03-18 03:07:12.654 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:12.704 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 03:07:12.704 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:12.704 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:12.704 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:12.704 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:12.704 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:07:12.704 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:12.704 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:12.704 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:07:12.704 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:07:12.704 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:12.704 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:07:12.714 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:07:12.714 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:07:12.714 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:07:12.764 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:07:13.064 -07 000000430 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:07:13.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:07:13.064 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:07:13.064 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) start.
17-03-18 03:07:13.104 -07 000000501 INF: FPGA: Recv @CAMSNAP 381
17-03-18 03:07:13.104 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-18 03:07:13.104 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 386 ms overall
17-03-18 03:07:13.184 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:07:13.184 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:13.184 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:07:13.184 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-18 03:07:13.204 -07 000000430 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:13.204 -07 000000561 INF: Autofocus start
17-03-18 03:07:13.204 -07 000000561 INF: MeasureProfile start
17-03-18 03:07:13.204 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:13.214 -07 000000430 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:13.214 -07 000000430 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:07:13.214 -07 000000561 INF: MeasureProfile done
17-03-18 03:07:13.214 -07 000000561 INF: X=-16  Z correction [um]=-0.1496812
17-03-18 03:07:13.214 -07 000000561 INF: Autofocus finished
17-03-18 03:07:13.414 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.989471,
17-03-18 03:07:13.414 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:07:13.414 -07 000000430 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-18 03:07:13.414 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175410971126735. ----------
17-03-18 03:07:13.424 -07 000000610 INF: Cycle	108	Tile	11	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:13.424 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36795, sync = True, waitForSettling = True)
17-03-18 03:07:13.424 -07 000000610 INF: Z Motor: Moving to -0.168437 mm, started at -0.175411 mm, distance = 6.97 um
17-03-18 03:07:13.434 -07 000000610 INF: FPGA: Xmit ZDACW 36795\n [Z Motor]
17-03-18 03:07:13.434 -07 000000579 INF: FPGA: Recv ZDACW
17-03-18 03:07:13.444 -07 000000610 INF: FPGA: 'ZDACW 36795' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:07:13.444 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:13.444 -07 000000444 INF: FPGA: Recv ZDACR 36795
17-03-18 03:07:13.454 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.454 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:13.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.604 -07 000000455 INF: FPGA: Recv ZSGSRD 35506
17-03-18 03:07:13.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:13.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.614 -07 000000430 INF: FPGA: Recv ZSGSRD 35512
17-03-18 03:07:13.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.624 -07 000000467 INF: FPGA: Recv ZSGSRD 35505
17-03-18 03:07:13.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.634 -07 000000590 INF: FPGA: Recv ZSGSRD 35506
17-03-18 03:07:13.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.644 -07 000000561 INF: FPGA: Recv ZSGSRD 35508
17-03-18 03:07:13.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.654 -07 000000579 INF: FPGA: Recv ZSGSRD 35512
17-03-18 03:07:13.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.664 -07 000000424 INF: FPGA: Recv ZSGSRD 35517
17-03-18 03:07:13.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.674 -07 000000626 INF: FPGA: Recv ZSGSRD 35509
17-03-18 03:07:13.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.684 -07 000000444 INF: FPGA: Recv ZSGSRD 35506
17-03-18 03:07:13.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:13.694 -07 000000576 INF: FPGA: Recv ZSGSRD 35509
17-03-18 03:07:13.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.704 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:13.704 -07 000000591 INF: FPGA: Recv ZPIEZORD 31266
17-03-18 03:07:13.714 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:13.714 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.615 V. Piezo Error = -9.4 V.
17-03-18 03:07:13.714 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35509 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35508 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35505 (-167.5 uncal um), Max = 35517 (-167.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:07:13.714 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35509, posNoise = 8, negNoise = 4
17-03-18 03:07:13.714 -07 000000610 INF: Z Motor: After move to -0.168437, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:13.714 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-18 03:07:13.714 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:13.714 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:13.714 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:13.714 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:13.714 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:13.714 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:13.714 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:13.714 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:13.714 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:13.714 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:13.714 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:13.714 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:13.724 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:07:13.724 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:13.724 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:13.724 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:13.734 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:07:13.734 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:07:13.734 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:07:13.734 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:07:13.734 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36972 150\n [Camera]
17-03-18 03:07:13.934 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:14.334 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:14.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:14.354 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:14.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:14.354 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:14.354 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:14.354 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:14.474 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:07:14.474 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:14.474 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:07:14.534 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36972 787
17-03-18 03:07:14.684 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:14.844 -07 000000629 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:07:14.844 -07 000000629 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:07:14.844 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:14.844 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 494 ms.
17-03-18 03:07:14.854 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-18 03:07:14.854 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:14.854 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:14.854 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:14.854 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-18 03:07:14.864 -07 000000629 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 03:07:14.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:14.874 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:14.874 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:14.874 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:14.874 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:14.874 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:14.884 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:14.884 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:07:14.884 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:14.884 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:07:15.064 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:07:15.064 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:15.064 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36972 150' command took 2 ms to send, 1326 ms to get response, and 1330 ms overall
17-03-18 03:07:15.064 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169094
17-03-18 03:07:15.064 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16909 mm
17-03-18 03:07:15.064 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:15.074 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 03:07:15.074 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 03:07:15.074 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 36939, sync = True, waitForSettling = False)
17-03-18 03:07:15.074 -07 000000462 INF: Z Motor: Moving to -0.169096 mm, started at -0.168441 mm, distance = -0.66 um
17-03-18 03:07:15.074 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:15.074 -07 000000561 INF: FPGA: Recv YRDPOS 139685
17-03-18 03:07:15.084 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:15.084 -07 000000626 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:15.084 -07 000000462 INF: FPGA: Xmit ZDACW 36939\n [Z Motor]
17-03-18 03:07:15.084 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:15.084 -07 000000626 INF: Y Motor: Moving 1339 steps-15
17-03-18 03:07:15.084 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 03:07:15.094 -07 000000462 INF: FPGA: 'ZDACW 36939' command took 2 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:07:15.094 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:15.094 -07 000000502 INF: FPGA: Recv ZDACR 36939
17-03-18 03:07:15.104 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:15.104 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:15.104 -07 000000462 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 03:07:15.264 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:07:15.264 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:07:15.264 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:15.264 -07 000000455 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:07:15.264 -07 000000455 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:07:15.264 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:15.264 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:15.274 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:15.274 -07 000000455 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:07:15.274 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:07:15.484 -07 000000579 INF: FPGA: Recv YMVTILE
17-03-18 03:07:15.484 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-18 03:07:15.524 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:15.524 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:07:15.534 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:15.534 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:15.534 -07 000000626 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:07:15.534 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-18 03:07:16.484 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:16.484 -07 000000512 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:07:16.494 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:16.494 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:16.514 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:16.514 -07 000000626 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:16.514 -07 000000626 INF: Y Motor: Moved to 69.0273 after 1447 ms (table move)
17-03-18 03:07:16.524 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169096 mm (DAC = 36939)
17-03-18 03:07:16.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.524 -07 000000591 INF: FPGA: Recv ZSGSRD 35613
17-03-18 03:07:16.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:16.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.534 -07 000000618 INF: FPGA: Recv ZSGSRD 35612
17-03-18 03:07:16.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.544 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:16.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:16.544 -07 000000467 INF: FPGA: Recv ZSGSRD 35607
17-03-18 03:07:16.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.554 -07 000000462 INF: FPGA: Recv ZSGSRD 35605
17-03-18 03:07:16.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.564 -07 000000430 INF: FPGA: Recv ZSGSRD 35610
17-03-18 03:07:16.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.574 -07 000000629 INF: FPGA: Recv ZSGSRD 35609
17-03-18 03:07:16.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.584 -07 000000444 INF: FPGA: Recv ZSGSRD 35618
17-03-18 03:07:16.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.594 -07 000000590 INF: FPGA: Recv ZSGSRD 35612
17-03-18 03:07:16.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.604 -07 000000461 INF: FPGA: Recv ZSGSRD 35603
17-03-18 03:07:16.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.614 -07 000000430 INF: FPGA: Recv ZSGSRD 35610
17-03-18 03:07:16.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:16.624 -07 000000606 INF: FPGA: Recv ZPIEZORD 31424
17-03-18 03:07:16.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.634 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.2 V.
17-03-18 03:07:16.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35610 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35610 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35603 (-168.2 uncal um), Max = 35618 (-168.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:07:16.634 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35610, posNoise = 8, negNoise = 7
17-03-18 03:07:16.634 -07 000000610 INF: Z Motor: After move to -0.169096, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:16.634 -07 000000610 INF: Z Motor: Settle wait time = 1449 ms, measure time = 109 ms (allowed 150 ms), total time = 1558 ms
17-03-18 03:07:16.634 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:16.684 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 03:07:16.684 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:16.684 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.169089546379243. ----------
17-03-18 03:07:16.684 -07 000000610 INF: Cycle	108	Tile	12	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:16.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36762, sync = True, waitForSettling = True)
17-03-18 03:07:16.684 -07 000000610 INF: Z Motor: Moving to -0.168286 mm, started at -0.169090 mm, distance = 0.80 um
17-03-18 03:07:16.684 -07 000000610 INF: FPGA: Xmit ZDACW 36762\n [Z Motor]
17-03-18 03:07:16.684 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 03:07:16.694 -07 000000610 INF: FPGA: 'ZDACW 36762' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:16.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:16.694 -07 000000467 INF: FPGA: Recv ZDACR 36762
17-03-18 03:07:16.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:16.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.854 -07 000000444 INF: FPGA: Recv ZSGSRD 35486
17-03-18 03:07:16.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:16.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.864 -07 000000569 INF: FPGA: Recv ZSGSRD 35488
17-03-18 03:07:16.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.874 -07 000000501 INF: FPGA: Recv ZSGSRD 35484
17-03-18 03:07:16.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.884 -07 000000561 INF: FPGA: Recv ZSGSRD 35483
17-03-18 03:07:16.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.894 -07 000000455 INF: FPGA: Recv ZSGSRD 35492
17-03-18 03:07:16.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.904 -07 000000579 INF: FPGA: Recv ZSGSRD 35484
17-03-18 03:07:16.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.914 -07 000000569 INF: FPGA: Recv ZSGSRD 35487
17-03-18 03:07:16.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.924 -07 000000591 INF: FPGA: Recv ZSGSRD 35489
17-03-18 03:07:16.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.934 -07 000000569 INF: FPGA: Recv ZSGSRD 35480
17-03-18 03:07:16.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:16.944 -07 000000606 INF: FPGA: Recv ZSGSRD 35489
17-03-18 03:07:16.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:16.954 -07 000000424 INF: FPGA: Recv ZPIEZORD 31273
17-03-18 03:07:16.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:16.964 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.3 V.
17-03-18 03:07:16.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35486 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35486 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35480 (-167.4 uncal um), Max = 35492 (-167.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:07:16.964 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35486, posNoise = 6, negNoise = 6
17-03-18 03:07:16.964 -07 000000610 INF: Z Motor: After move to -0.168286, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:16.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:07:16.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:16.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:16.964 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:16.964 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:16.964 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:16.964 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:16.964 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:07:16.964 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:16.964 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:16.964 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:16.964 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:07:16.964 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:16.964 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:16.964 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:16.974 -07 000000444 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:07:16.974 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:16.974 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:07:16.974 -07 000000591 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:07:16.984 -07 000000444 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:07:16.984 -07 000000444 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:07:16.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36939 150\n [Camera]
17-03-18 03:07:17.184 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:17.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:17.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:17.584 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:17.584 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:17.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:17.584 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:17.704 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:17.714 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:07:17.714 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:17.714 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:07:17.774 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36939 787
17-03-18 03:07:17.924 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:18.084 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:07:18.084 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:07:18.084 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:18.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:07:18.094 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:07:18.094 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:18.094 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:18.094 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-18 03:07:18.094 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:18.104 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-18 03:07:18.124 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:18.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:18.124 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:18.124 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:18.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:18.124 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:18.124 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:18.124 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:07:18.134 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:18.134 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:07:18.314 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:07:18.314 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:18.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36939 150' command took 2 ms to send, 1322 ms to get response, and 1330 ms overall
17-03-18 03:07:18.314 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168623
17-03-18 03:07:18.314 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16862 mm
17-03-18 03:07:18.314 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:18.314 -07 000000455 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 03:07:18.314 -07 000000455 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 03:07:18.314 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:18.314 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 36836, sync = True, waitForSettling = False)
17-03-18 03:07:18.314 -07 000000618 INF: Z Motor: Moving to -0.168624 mm, started at -0.168293 mm, distance = -0.33 um
17-03-18 03:07:18.324 -07 000000618 INF: FPGA: Xmit ZDACW 36836\n [Z Motor]
17-03-18 03:07:18.324 -07 000000590 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:07:18.324 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:18.324 -07 000000455 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:18.324 -07 000000455 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:18.324 -07 000000455 INF: Y Motor: Moving 1352 steps-31
17-03-18 03:07:18.324 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:07:18.334 -07 000000618 INF: FPGA: 'ZDACW 36836' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:07:18.334 -07 000000455 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:18.344 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:18.344 -07 000000561 INF: FPGA: Recv ZDACR 36836
17-03-18 03:07:18.354 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:18.354 -07 000000618 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-18 03:07:18.504 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:07:18.504 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:07:18.504 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:18.504 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:18.504 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:07:18.504 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:07:18.504 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:18.514 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:18.514 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:07:18.514 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:07:18.704 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:07:18.704 -07 000000455 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 03:07:18.754 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:18.764 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:07:18.764 -07 000000455 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:18.764 -07 000000455 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:18.764 -07 000000455 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:07:18.764 -07 000000455 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.190 mm/sec
17-03-18 03:07:18.794 -07 000000430 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.994908,
17-03-18 03:07:19.714 -07 000000455 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:19.714 -07 000000579 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:07:19.724 -07 000000455 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.724 -07 000000455 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:19.744 -07 000000455 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:19.744 -07 000000455 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:19.744 -07 000000455 INF: Y Motor: Moved to 69.8633 after 1431 ms (table move)
17-03-18 03:07:19.754 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168624 mm (DAC = 36836)
17-03-18 03:07:19.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.754 -07 000000462 INF: FPGA: Recv ZSGSRD 35534
17-03-18 03:07:19.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:19.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.764 -07 000000512 INF: FPGA: Recv ZSGSRD 35551
17-03-18 03:07:19.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.774 -07 000000576 INF: FPGA: Recv ZSGSRD 35531
17-03-18 03:07:19.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.784 -07 000000501 INF: FPGA: Recv ZSGSRD 35541
17-03-18 03:07:19.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.794 -07 000000424 INF: FPGA: Recv ZSGSRD 35537
17-03-18 03:07:19.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.804 -07 000000629 INF: FPGA: Recv ZSGSRD 35536
17-03-18 03:07:19.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.814 -07 000000569 INF: FPGA: Recv ZSGSRD 35538
17-03-18 03:07:19.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.824 -07 000000461 INF: FPGA: Recv ZSGSRD 35534
17-03-18 03:07:19.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.834 -07 000000430 INF: FPGA: Recv ZSGSRD 35541
17-03-18 03:07:19.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:19.844 -07 000000618 INF: FPGA: Recv ZSGSRD 35546
17-03-18 03:07:19.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.854 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:19.854 -07 000000462 INF: FPGA: Recv ZPIEZORD 31343
17-03-18 03:07:19.864 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.864 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.3 V.
17-03-18 03:07:19.864 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35539 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35538 (-167.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35531 (-167.7 uncal um), Max = 35551 (-167.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:07:19.864 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35539, posNoise = 12, negNoise = 8
17-03-18 03:07:19.864 -07 000000610 INF: Z Motor: After move to -0.168624, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:19.864 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 109 ms (allowed 150 ms), total time = 1542 ms
17-03-18 03:07:19.864 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:19.914 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 03:07:19.914 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:19.914 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.168633427317178. ----------
17-03-18 03:07:19.914 -07 000000610 INF: Cycle	108	Tile	13	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:19.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36659, sync = True, waitForSettling = True)
17-03-18 03:07:19.914 -07 000000610 INF: Z Motor: Moving to -0.167814 mm, started at -0.168633 mm, distance = 0.82 um
17-03-18 03:07:19.914 -07 000000610 INF: FPGA: Xmit ZDACW 36659\n [Z Motor]
17-03-18 03:07:19.914 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 03:07:19.924 -07 000000610 INF: FPGA: 'ZDACW 36659' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:19.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:19.924 -07 000000576 INF: FPGA: Recv ZDACR 36659
17-03-18 03:07:19.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:19.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:20.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.084 -07 000000629 INF: FPGA: Recv ZSGSRD 35419
17-03-18 03:07:20.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.094 -07 000000512 INF: FPGA: Recv ZSGSRD 35415
17-03-18 03:07:20.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.104 -07 000000626 INF: FPGA: Recv ZSGSRD 35411
17-03-18 03:07:20.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.114 -07 000000618 INF: FPGA: Recv ZSGSRD 35415
17-03-18 03:07:20.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.124 -07 000000424 INF: FPGA: Recv ZSGSRD 35408
17-03-18 03:07:20.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.134 -07 000000629 INF: FPGA: Recv ZSGSRD 35414
17-03-18 03:07:20.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.144 -07 000000512 INF: FPGA: Recv ZSGSRD 35416
17-03-18 03:07:20.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.154 -07 000000444 INF: FPGA: Recv ZSGSRD 35419
17-03-18 03:07:20.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.164 -07 000000467 INF: FPGA: Recv ZSGSRD 35416
17-03-18 03:07:20.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:20.174 -07 000000626 INF: FPGA: Recv ZSGSRD 35413
17-03-18 03:07:20.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:20.184 -07 000000467 INF: FPGA: Recv ZPIEZORD 31165
17-03-18 03:07:20.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:20.194 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.594 V. Piezo Error = -9.4 V.
17-03-18 03:07:20.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35415 (-167.0 uncal um), Error = 0.8 uncal um, Median = 35415 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35408 (-166.9 uncal um), Max = 35419 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:07:20.194 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35415, posNoise = 4, negNoise = 7
17-03-18 03:07:20.194 -07 000000610 INF: Z Motor: After move to -0.167814, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:20.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:07:20.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:20.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:20.194 -07 000000606 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:20.194 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:20.194 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:20.194 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:20.194 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:20.194 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:20.194 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:20.194 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:20.194 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-18 03:07:20.194 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:20.204 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:07:20.204 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:20.204 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:07:20.204 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:20.214 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:07:20.214 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:07:20.214 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:07:20.214 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:07:20.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36836 150\n [Camera]
17-03-18 03:07:20.414 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:20.814 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:20.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:20.814 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:20.814 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:20.814 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:07:20.814 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:20.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:20.824 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:20.824 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:20.824 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:07:21.004 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36836 787
17-03-18 03:07:21.164 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:21.194 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:07:21.194 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:07:21.194 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:07:21.194 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:21.194 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:07:21.194 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:21.204 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:07:21.204 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:21.204 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:07:21.204 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:07:21.354 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:21.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:21.354 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:21.354 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:21.354 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:07:21.354 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:21.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:21.354 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:21.354 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:21.354 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:07:21.544 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:21.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:21.544 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:07:21.544 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:21.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36836 150' command took 2 ms to send, 1326 ms to get response, and 1331 ms overall
17-03-18 03:07:21.544 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.167757
17-03-18 03:07:21.544 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16776 mm
17-03-18 03:07:21.544 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:21.554 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 03:07:21.554 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 36647, sync = True, waitForSettling = False)
17-03-18 03:07:21.554 -07 000000512 INF: Z Motor: Moving to -0.167759 mm, started at -0.167837 mm, distance = 0.08 um
17-03-18 03:07:21.554 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 03:07:21.554 -07 000000512 INF: FPGA: Xmit ZDACW 36647\n [Z Motor]
17-03-18 03:07:21.554 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 03:07:21.564 -07 000000512 INF: FPGA: 'ZDACW 36647' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:21.564 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:21.564 -07 000000462 INF: FPGA: Recv ZDACR 36647
17-03-18 03:07:21.574 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:21.574 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:21.574 -07 000000512 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-18 03:07:21.574 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:07:21.584 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:07:21.584 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:21.584 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:21.584 -07 000000626 INF: Y Motor: Moving 1343 steps-19
17-03-18 03:07:21.584 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:21.734 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:07:21.734 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:07:21.734 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:21.734 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-18 03:07:21.734 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:07:21.734 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:21.744 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:21.744 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:07:21.744 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:21.754 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-18 03:07:21.954 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:07:21.954 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 03:07:22.014 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:22.014 -07 000000591 INF: FPGA: Recv YRDPOS 144769
17-03-18 03:07:22.024 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:22.024 -07 000000626 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:22.024 -07 000000626 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-18 03:07:22.024 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.220 mm/sec
17-03-18 03:07:22.974 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:22.974 -07 000000576 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:07:22.984 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:22.984 -07 000000626 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:23.004 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:23.014 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:07:23.014 -07 000000626 INF: Y Motor: Moved to 70.6885 after 1460 ms (table move)
17-03-18 03:07:23.014 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167759 mm (DAC = 36647)
17-03-18 03:07:23.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.014 -07 000000569 INF: FPGA: Recv ZSGSRD 35403
17-03-18 03:07:23.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:23.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.024 -07 000000626 INF: FPGA: Recv ZSGSRD 35409
17-03-18 03:07:23.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.034 -07 000000424 INF: FPGA: Recv ZSGSRD 35404
17-03-18 03:07:23.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.044 -07 000000467 INF: FPGA: Recv ZSGSRD 35404
17-03-18 03:07:23.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.054 -07 000000462 INF: FPGA: Recv ZSGSRD 35398
17-03-18 03:07:23.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.064 -07 000000512 INF: FPGA: Recv ZSGSRD 35405
17-03-18 03:07:23.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.074 -07 000000606 INF: FPGA: Recv ZSGSRD 35403
17-03-18 03:07:23.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.084 -07 000000424 INF: FPGA: Recv ZSGSRD 35405
17-03-18 03:07:23.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.094 -07 000000590 INF: FPGA: Recv ZSGSRD 35409
17-03-18 03:07:23.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.104 -07 000000576 INF: FPGA: Recv ZSGSRD 35409
17-03-18 03:07:23.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.114 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:23.114 -07 000000569 INF: FPGA: Recv ZPIEZORD 31177
17-03-18 03:07:23.124 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.124 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.3 V.
17-03-18 03:07:23.124 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35405 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35404 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35398 (-166.9 uncal um), Max = 35409 (-166.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:07:23.124 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35405, posNoise = 4, negNoise = 7
17-03-18 03:07:23.124 -07 000000610 INF: Z Motor: After move to -0.167759, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:23.124 -07 000000610 INF: Z Motor: Settle wait time = 1462 ms, measure time = 107 ms (allowed 150 ms), total time = 1569 ms
17-03-18 03:07:23.124 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:23.174 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 03:07:23.174 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:23.174 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.167772582890182. ----------
17-03-18 03:07:23.174 -07 000000610 INF: Cycle	108	Tile	14	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:23.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36470, sync = True, waitForSettling = True)
17-03-18 03:07:23.174 -07 000000610 INF: Z Motor: Moving to -0.166949 mm, started at -0.167773 mm, distance = 0.82 um
17-03-18 03:07:23.174 -07 000000610 INF: FPGA: Xmit ZDACW 36470\n [Z Motor]
17-03-18 03:07:23.184 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 03:07:23.184 -07 000000610 INF: FPGA: 'ZDACW 36470' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:07:23.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:23.184 -07 000000626 INF: FPGA: Recv ZDACR 36470
17-03-18 03:07:23.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:23.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.344 -07 000000502 INF: FPGA: Recv ZSGSRD 35280
17-03-18 03:07:23.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:23.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.354 -07 000000467 INF: FPGA: Recv ZSGSRD 35282
17-03-18 03:07:23.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.364 -07 000000576 INF: FPGA: Recv ZSGSRD 35281
17-03-18 03:07:23.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.374 -07 000000424 INF: FPGA: Recv ZSGSRD 35279
17-03-18 03:07:23.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.384 -07 000000590 INF: FPGA: Recv ZSGSRD 35276
17-03-18 03:07:23.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.394 -07 000000579 INF: FPGA: Recv ZSGSRD 35276
17-03-18 03:07:23.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.404 -07 000000467 INF: FPGA: Recv ZSGSRD 35285
17-03-18 03:07:23.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.414 -07 000000626 INF: FPGA: Recv ZSGSRD 35283
17-03-18 03:07:23.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.424 -07 000000512 INF: FPGA: Recv ZSGSRD 35275
17-03-18 03:07:23.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:23.434 -07 000000430 INF: FPGA: Recv ZSGSRD 35281
17-03-18 03:07:23.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:23.444 -07 000000461 INF: FPGA: Recv ZPIEZORD 30992
17-03-18 03:07:23.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:23.454 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.565 V. Piezo Error = -9.4 V.
17-03-18 03:07:23.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35280 (-166.1 uncal um), Error = 0.8 uncal um, Median = 35280 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35275 (-166.1 uncal um), Max = 35285 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:07:23.454 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35280, posNoise = 5, negNoise = 5
17-03-18 03:07:23.454 -07 000000610 INF: Z Motor: After move to -0.166949, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:23.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-18 03:07:23.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:23.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:23.454 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:23.454 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:23.454 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:23.454 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:23.454 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:23.454 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:23.454 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:23.454 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:23.454 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:23.454 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:23.464 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:07:23.464 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:23.464 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:07:23.464 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:23.474 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-18 03:07:23.474 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:07:23.474 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-18 03:07:23.474 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-18 03:07:23.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36647 150\n [Camera]
17-03-18 03:07:23.684 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:24.094 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:24.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:24.094 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:24.094 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:24.094 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:07:24.094 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:24.094 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:24.094 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:24.094 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:24.094 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:07:24.154 -07 000000606 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.016692,
17-03-18 03:07:24.284 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36647 787
17-03-18 03:07:24.434 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:24.494 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 404 ms.
17-03-18 03:07:24.494 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:07:24.494 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:24.494 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-18 03:07:24.494 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:07:24.494 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:24.504 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:07:24.504 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-18 03:07:24.504 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:24.514 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-18 03:07:24.624 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:24.624 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:24.624 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:24.624 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:24.624 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 03:07:24.634 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:24.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:24.634 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:24.754 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:24.754 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:07:24.814 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:07:24.814 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:24.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36647 150' command took 2 ms to send, 1320 ms to get response, and 1342 ms overall
17-03-18 03:07:24.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:07:24.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.166969556372462. ------
17-03-18 03:07:24.824 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:24.824 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17368 mm
17-03-18 03:07:24.824 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:24.824 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:24.824 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37940, sync = True, waitForSettling = False)
17-03-18 03:07:24.824 -07 000000561 INF: Z Motor: Moving to -0.173678 mm, started at -0.166970 mm, distance = -6.71 um
17-03-18 03:07:24.824 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 03:07:24.824 -07 000000430 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 03:07:24.834 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:24.834 -07 000000561 INF: FPGA: Xmit ZDACW 37940\n [Z Motor]
17-03-18 03:07:24.834 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 03:07:24.844 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:24.844 -07 000000561 INF: FPGA: 'ZDACW 37940' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:07:24.844 -07 000000629 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:07:24.854 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:07:24.854 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:07:24.854 -07 000000430 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:24.854 -07 000000430 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:24.854 -07 000000430 INF: Y Motor: Moving 1351 steps-30
17-03-18 03:07:24.864 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:24.864 -07 000000629 INF: FPGA: Recv ZDACR 37940
17-03-18 03:07:24.874 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:24.874 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:07:24.874 -07 000000561 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-18 03:07:25.014 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:07:25.014 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:07:25.014 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:25.014 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:25.014 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-18 03:07:25.054 -07 000000455 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:07:25.054 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:07:25.124 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 03:07:25.124 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:07:25.124 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:25.134 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:25.134 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-18 03:07:25.254 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 03:07:25.254 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-18 03:07:25.294 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:25.304 -07 000000569 INF: FPGA: Recv YRDPOS 146470
17-03-18 03:07:25.304 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:07:25.304 -07 000000430 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:25.304 -07 000000430 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:07:25.304 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.116 mm/sec
17-03-18 03:07:26.254 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:26.254 -07 000000569 INF: FPGA: Recv YRDPOS 146470
17-03-18 03:07:26.264 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:26.264 -07 000000430 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:26.284 -07 000000430 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:26.284 -07 000000430 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:26.284 -07 000000430 INF: Y Motor: Moved to 71.5186 after 1460 ms (table move)
17-03-18 03:07:26.294 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173678 mm (DAC = 37940)
17-03-18 03:07:26.294 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.294 -07 000000444 INF: FPGA: Recv ZSGSRD 36321
17-03-18 03:07:26.304 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:26.304 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.304 -07 000000606 INF: FPGA: Recv ZSGSRD 36331
17-03-18 03:07:26.314 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.314 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.314 -07 000000461 INF: FPGA: Recv ZSGSRD 36329
17-03-18 03:07:26.324 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.324 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.324 -07 000000579 INF: FPGA: Recv ZSGSRD 36324
17-03-18 03:07:26.334 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.334 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.334 -07 000000590 INF: FPGA: Recv ZSGSRD 36319
17-03-18 03:07:26.344 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.344 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.344 -07 000000591 INF: FPGA: Recv ZSGSRD 36325
17-03-18 03:07:26.354 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.354 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.354 -07 000000462 INF: FPGA: Recv ZSGSRD 36324
17-03-18 03:07:26.364 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.364 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.364 -07 000000618 INF: FPGA: Recv ZSGSRD 36322
17-03-18 03:07:26.374 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.374 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.374 -07 000000579 INF: FPGA: Recv ZSGSRD 36323
17-03-18 03:07:26.384 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.384 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:26.384 -07 000000590 INF: FPGA: Recv ZSGSRD 36329
17-03-18 03:07:26.394 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.394 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:26.394 -07 000000591 INF: FPGA: Recv ZPIEZORD 32395
17-03-18 03:07:26.404 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:26.404 -07 000000512 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.7 V.
17-03-18 03:07:26.404 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36325 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36324 (-172.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36319 (-172.8 uncal um), Max = 36331 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:07:26.404 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36325, posNoise = 6, negNoise = 6
17-03-18 03:07:26.404 -07 000000512 INF: Z Motor: After move to -0.173678, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:26.404 -07 000000512 INF: Z Motor: Settle wait time = 1464 ms, measure time = 107 ms (allowed 150 ms), total time = 1571 ms
17-03-18 03:07:26.404 -07 000000512 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:26.454 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1624 ms
17-03-18 03:07:26.454 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:26.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:26.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:26.454 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:26.454 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:26.454 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:07:26.454 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:26.464 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:07:26.464 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:07:26.464 -07 000000455 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:26.464 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:07:26.464 -07 000000455 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:07:26.464 -07 000000455 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:07:26.474 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:07:26.514 -07 000000444 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:07:26.544 -07 000000591 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:26.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:26.814 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:07:26.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:07:26.814 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:07:26.824 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:07:26.854 -07 000000462 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:07:26.854 -07 000000430 INF: FPGA: Recv CAMSNAP
17-03-18 03:07:26.854 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 377 ms to get response, and 385 ms overall
17-03-18 03:07:26.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:07:26.934 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:26.944 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:07:26.944 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-18 03:07:26.954 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:26.954 -07 000000512 INF: Autofocus start
17-03-18 03:07:26.954 -07 000000512 INF: MeasureProfile start
17-03-18 03:07:26.954 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:26.964 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:26.964 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:07:26.964 -07 000000512 INF: MeasureProfile done
17-03-18 03:07:26.964 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-18 03:07:26.964 -07 000000512 INF: Autofocus finished
17-03-18 03:07:27.164 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:07:27.164 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:07:27.164 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173682858060602. ----------
17-03-18 03:07:27.174 -07 000000610 INF: Cycle	108	Tile	15	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:27.174 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36455, sync = True, waitForSettling = True)
17-03-18 03:07:27.174 -07 000000610 INF: Z Motor: Moving to -0.166880 mm, started at -0.173683 mm, distance = 6.80 um
17-03-18 03:07:27.174 -07 000000610 INF: FPGA: Xmit ZDACW 36455\n [Z Motor]
17-03-18 03:07:27.174 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 03:07:27.184 -07 000000610 INF: FPGA: 'ZDACW 36455' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:27.184 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:27.184 -07 000000579 INF: FPGA: Recv ZDACR 36455
17-03-18 03:07:27.194 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.194 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:27.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.344 -07 000000569 INF: FPGA: Recv ZSGSRD 35266
17-03-18 03:07:27.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:27.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.354 -07 000000430 INF: FPGA: Recv ZSGSRD 35270
17-03-18 03:07:27.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.364 -07 000000618 INF: FPGA: Recv ZSGSRD 35266
17-03-18 03:07:27.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.374 -07 000000462 INF: FPGA: Recv ZSGSRD 35261
17-03-18 03:07:27.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.384 -07 000000430 INF: FPGA: Recv ZSGSRD 35272
17-03-18 03:07:27.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:27.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.394 -07 000000502 INF: FPGA: Recv ZSGSRD 35273
17-03-18 03:07:27.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.404 -07 000000501 INF: FPGA: Recv ZSGSRD 35267
17-03-18 03:07:27.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.414 -07 000000502 INF: FPGA: Recv ZSGSRD 35269
17-03-18 03:07:27.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.424 -07 000000444 INF: FPGA: Recv ZSGSRD 35264
17-03-18 03:07:27.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:27.434 -07 000000579 INF: FPGA: Recv ZSGSRD 35271
17-03-18 03:07:27.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.444 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:27.444 -07 000000444 INF: FPGA: Recv ZPIEZORD 30982
17-03-18 03:07:27.454 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:27.454 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.4 V.
17-03-18 03:07:27.454 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35268 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35268 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35261 (-166.0 uncal um), Max = 35273 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:07:27.454 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35268, posNoise = 5, negNoise = 7
17-03-18 03:07:27.454 -07 000000610 INF: Z Motor: After move to -0.166880, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:27.454 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-18 03:07:27.454 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:27.454 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:27.454 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:27.454 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:27.454 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:27.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:27.454 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:27.454 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:27.454 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:07:27.454 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:27.454 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:27.454 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:27.454 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:27.454 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:27.464 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:07:27.464 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:27.464 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:07:27.464 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:07:27.464 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:07:27.474 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:07:27.474 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36631 150\n [Camera]
17-03-18 03:07:27.674 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-18 03:07:28.074 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 596
17-03-18 03:07:28.074 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 596
17-03-18 03:07:28.074 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:28.084 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 596
17-03-18 03:07:28.084 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 596
17-03-18 03:07:28.084 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:28.084 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:28.084 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:07:28.084 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:28.084 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:07:28.264 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36631 787
17-03-18 03:07:28.414 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:28.454 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 368 ms.
17-03-18 03:07:28.454 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-18 03:07:28.454 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:28.454 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 03:07:28.454 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-18 03:07:28.454 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:28.464 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:28.464 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:28.464 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:07:28.464 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:07:28.614 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:28.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:28.614 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:28.614 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:28.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:28.614 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:28.734 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:28.734 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-18 03:07:28.734 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:28.734 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:07:28.804 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:07:28.804 -07 000000461 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:28.804 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36631 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-18 03:07:28.804 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167287
17-03-18 03:07:28.804 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16729 mm
17-03-18 03:07:28.804 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:28.804 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 03:07:28.804 -07 000000502 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-18 03:07:28.804 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:28.804 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 36544, sync = True, waitForSettling = False)
17-03-18 03:07:28.804 -07 000000629 INF: Z Motor: Moving to -0.167288 mm, started at -0.166892 mm, distance = -0.40 um
17-03-18 03:07:28.814 -07 000000629 INF: FPGA: Xmit ZDACW 36544\n [Z Motor]
17-03-18 03:07:28.814 -07 000000430 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:07:28.814 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:07:28.814 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:28.814 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 03:07:28.814 -07 000000502 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:28.814 -07 000000502 INF: Y Motor: Moving 1350 steps-29
17-03-18 03:07:28.824 -07 000000629 INF: FPGA: 'ZDACW 36544' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:07:28.824 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:28.834 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:28.834 -07 000000569 INF: FPGA: Recv ZDACR 36544
17-03-18 03:07:28.844 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:28.844 -07 000000629 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 03:07:29.124 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-18 03:07:29.124 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-18 03:07:29.124 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:29.124 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 03:07:29.124 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:07:29.124 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:29.124 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:29.124 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:29.124 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-18 03:07:29.134 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-18 03:07:29.194 -07 000000461 INF: FPGA: Recv YMVTILE
17-03-18 03:07:29.194 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-18 03:07:29.244 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:29.244 -07 000000512 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:07:29.254 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:07:29.254 -07 000000502 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:29.254 -07 000000502 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 03:07:29.254 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.844 mm, average velocity = 2.215 mm/sec
17-03-18 03:07:29.514 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.054831,
17-03-18 03:07:30.204 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:30.204 -07 000000561 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:07:30.214 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:30.214 -07 000000502 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:30.244 -07 000000502 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:30.244 -07 000000502 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:30.244 -07 000000502 INF: Y Motor: Moved to 72.3496 after 1433 ms (table move)
17-03-18 03:07:30.244 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167288 mm (DAC = 36544)
17-03-18 03:07:30.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.244 -07 000000467 INF: FPGA: Recv ZSGSRD 35323
17-03-18 03:07:30.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:30.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.254 -07 000000606 INF: FPGA: Recv ZSGSRD 35328
17-03-18 03:07:30.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.264 -07 000000626 INF: FPGA: Recv ZSGSRD 35336
17-03-18 03:07:30.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.274 -07 000000461 INF: FPGA: Recv ZSGSRD 35332
17-03-18 03:07:30.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.284 -07 000000501 INF: FPGA: Recv ZSGSRD 35333
17-03-18 03:07:30.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.294 -07 000000512 INF: FPGA: Recv ZSGSRD 35329
17-03-18 03:07:30.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.304 -07 000000502 INF: FPGA: Recv ZSGSRD 35325
17-03-18 03:07:30.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.314 -07 000000467 INF: FPGA: Recv ZSGSRD 35331
17-03-18 03:07:30.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.324 -07 000000502 INF: FPGA: Recv ZSGSRD 35329
17-03-18 03:07:30.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.334 -07 000000424 INF: FPGA: Recv ZSGSRD 35336
17-03-18 03:07:30.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.344 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:30.344 -07 000000455 INF: FPGA: Recv ZPIEZORD 31064
17-03-18 03:07:30.354 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.354 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -9.4 V.
17-03-18 03:07:30.354 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35330 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35330 (-166.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35323 (-166.4 uncal um), Max = 35336 (-166.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:07:30.354 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35330, posNoise = 6, negNoise = 7
17-03-18 03:07:30.354 -07 000000610 INF: Z Motor: After move to -0.167288, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:30.354 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-18 03:07:30.354 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:30.404 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 03:07:30.404 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:30.404 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.16729076697955. ----------
17-03-18 03:07:30.404 -07 000000610 INF: Cycle	108	Tile	16	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:30.404 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36367, sync = True, waitForSettling = True)
17-03-18 03:07:30.404 -07 000000610 INF: Z Motor: Moving to -0.166477 mm, started at -0.167291 mm, distance = 0.81 um
17-03-18 03:07:30.404 -07 000000610 INF: FPGA: Xmit ZDACW 36367\n [Z Motor]
17-03-18 03:07:30.414 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:07:30.414 -07 000000610 INF: FPGA: 'ZDACW 36367' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:30.414 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:30.414 -07 000000561 INF: FPGA: Recv ZDACR 36367
17-03-18 03:07:30.424 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:30.424 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:30.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.574 -07 000000629 INF: FPGA: Recv ZSGSRD 35203
17-03-18 03:07:30.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.584 -07 000000430 INF: FPGA: Recv ZSGSRD 35207
17-03-18 03:07:30.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.594 -07 000000576 INF: FPGA: Recv ZSGSRD 35205
17-03-18 03:07:30.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.604 -07 000000467 INF: FPGA: Recv ZSGSRD 35202
17-03-18 03:07:30.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.614 -07 000000626 INF: FPGA: Recv ZSGSRD 35205
17-03-18 03:07:30.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.624 -07 000000461 INF: FPGA: Recv ZSGSRD 35207
17-03-18 03:07:30.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.634 -07 000000579 INF: FPGA: Recv ZSGSRD 35205
17-03-18 03:07:30.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.644 -07 000000455 INF: FPGA: Recv ZSGSRD 35205
17-03-18 03:07:30.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.654 -07 000000430 INF: FPGA: Recv ZSGSRD 35203
17-03-18 03:07:30.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:30.664 -07 000000512 INF: FPGA: Recv ZSGSRD 35206
17-03-18 03:07:30.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.674 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:30.674 -07 000000467 INF: FPGA: Recv ZPIEZORD 30869
17-03-18 03:07:30.684 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:30.684 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.549 V. Piezo Error = -9.5 V.
17-03-18 03:07:30.684 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35205 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35205 (-165.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35202 (-165.6 uncal um), Max = 35207 (-165.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:07:30.684 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35205, posNoise = 2, negNoise = 3
17-03-18 03:07:30.684 -07 000000610 INF: Z Motor: After move to -0.166477, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:30.684 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-18 03:07:30.684 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:30.684 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:30.684 -07 000000444 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:30.684 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:30.684 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:30.684 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:30.684 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:30.684 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:30.684 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:07:30.684 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:30.684 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:30.684 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:30.694 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:07:30.694 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:30.694 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:07:30.694 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:30.704 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:07:30.704 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:07:30.704 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:07:30.704 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:07:30.704 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36544 150\n [Camera]
17-03-18 03:07:30.904 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:31.304 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:31.304 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:31.304 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:31.314 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:31.314 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:31.314 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:31.314 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:31.314 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-18 03:07:31.314 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:31.314 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-18 03:07:31.494 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36544 787
17-03-18 03:07:31.544 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:31.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:31.644 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:31.694 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:07:31.694 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:07:31.694 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:31.694 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:07:31.694 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:07:31.694 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:31.694 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:31.704 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:31.704 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:07:31.704 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-18 03:07:31.844 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:31.844 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:31.844 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:31.844 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:31.844 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 03:07:31.844 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:31.844 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:31.844 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:31.844 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:31.844 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:07:32.034 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:07:32.034 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:32.034 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36544 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-18 03:07:32.034 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.166986
17-03-18 03:07:32.034 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16699 mm
17-03-18 03:07:32.034 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:32.034 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 03:07:32.034 -07 000000444 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 03:07:32.034 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:32.034 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 36478, sync = True, waitForSettling = False)
17-03-18 03:07:32.034 -07 000000455 INF: Z Motor: Moving to -0.166986 mm, started at -0.166488 mm, distance = -0.50 um
17-03-18 03:07:32.044 -07 000000455 INF: FPGA: Xmit ZDACW 36478\n [Z Motor]
17-03-18 03:07:32.044 -07 000000590 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:07:32.044 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:07:32.044 -07 000000444 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:32.044 -07 000000444 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:32.044 -07 000000444 INF: Y Motor: Moving 1349 steps-27
17-03-18 03:07:32.044 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 03:07:32.054 -07 000000455 INF: FPGA: 'ZDACW 36478' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:32.054 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:32.064 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:32.064 -07 000000424 INF: FPGA: Recv ZDACR 36478
17-03-18 03:07:32.074 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:32.074 -07 000000455 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-18 03:07:32.234 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 03:07:32.234 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 03:07:32.234 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:32.234 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 03:07:32.234 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:07:32.234 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:32.234 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:32.234 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:07:32.234 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:32.244 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-18 03:07:32.424 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 03:07:32.424 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-18 03:07:32.474 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:32.474 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:07:32.484 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:07:32.484 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:32.484 -07 000000444 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 03:07:32.484 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.843 mm, average velocity = 2.184 mm/sec
17-03-18 03:07:33.434 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:33.434 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:07:33.444 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.444 -07 000000444 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:33.464 -07 000000444 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:33.464 -07 000000444 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:33.464 -07 000000444 INF: Y Motor: Moved to 73.1763 after 1431 ms (table move)
17-03-18 03:07:33.474 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166986 mm (DAC = 36478)
17-03-18 03:07:33.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.474 -07 000000618 INF: FPGA: Recv ZSGSRD 35288
17-03-18 03:07:33.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:07:33.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.484 -07 000000462 INF: FPGA: Recv ZSGSRD 35282
17-03-18 03:07:33.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.494 -07 000000569 INF: FPGA: Recv ZSGSRD 35291
17-03-18 03:07:33.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.504 -07 000000629 INF: FPGA: Recv ZSGSRD 35279
17-03-18 03:07:33.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.514 -07 000000462 INF: FPGA: Recv ZSGSRD 35286
17-03-18 03:07:33.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.524 -07 000000618 INF: FPGA: Recv ZSGSRD 35287
17-03-18 03:07:33.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.534 -07 000000424 INF: FPGA: Recv ZSGSRD 35285
17-03-18 03:07:33.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.544 -07 000000467 INF: FPGA: Recv ZSGSRD 35283
17-03-18 03:07:33.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.554 -07 000000424 INF: FPGA: Recv ZSGSRD 35276
17-03-18 03:07:33.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.564 -07 000000579 INF: FPGA: Recv ZSGSRD 35285
17-03-18 03:07:33.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.574 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:33.574 -07 000000501 INF: FPGA: Recv ZPIEZORD 31023
17-03-18 03:07:33.584 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.584 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.4 V.
17-03-18 03:07:33.584 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35284 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35285 (-166.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35276 (-166.1 uncal um), Max = 35291 (-166.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:07:33.584 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35284, posNoise = 7, negNoise = 8
17-03-18 03:07:33.584 -07 000000610 INF: Z Motor: After move to -0.166986, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:33.584 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-18 03:07:33.584 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:33.634 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-18 03:07:33.634 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:33.634 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.166995253221029. ----------
17-03-18 03:07:33.634 -07 000000610 INF: Cycle	108	Tile	17	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:33.634 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36301, sync = True, waitForSettling = True)
17-03-18 03:07:33.634 -07 000000610 INF: Z Motor: Moving to -0.166175 mm, started at -0.166995 mm, distance = 0.82 um
17-03-18 03:07:33.634 -07 000000610 INF: FPGA: Xmit ZDACW 36301\n [Z Motor]
17-03-18 03:07:33.634 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:07:33.644 -07 000000610 INF: FPGA: 'ZDACW 36301' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:33.644 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:33.644 -07 000000606 INF: FPGA: Recv ZDACR 36301
17-03-18 03:07:33.654 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.654 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:33.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.804 -07 000000576 INF: FPGA: Recv ZSGSRD 35156
17-03-18 03:07:33.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:33.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.814 -07 000000561 INF: FPGA: Recv ZSGSRD 35159
17-03-18 03:07:33.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.824 -07 000000444 INF: FPGA: Recv ZSGSRD 35165
17-03-18 03:07:33.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.834 -07 000000462 INF: FPGA: Recv ZSGSRD 35156
17-03-18 03:07:33.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.844 -07 000000501 INF: FPGA: Recv ZSGSRD 35161
17-03-18 03:07:33.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.854 -07 000000579 INF: FPGA: Recv ZSGSRD 35158
17-03-18 03:07:33.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.864 -07 000000467 INF: FPGA: Recv ZSGSRD 35156
17-03-18 03:07:33.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.874 -07 000000461 INF: FPGA: Recv ZSGSRD 35151
17-03-18 03:07:33.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.884 -07 000000590 INF: FPGA: Recv ZSGSRD 35153
17-03-18 03:07:33.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:33.904 -07 000000629 INF: FPGA: Recv ZSGSRD 35163
17-03-18 03:07:33.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:33.914 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:33.914 -07 000000467 INF: FPGA: Recv ZPIEZORD 30839
17-03-18 03:07:33.924 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:33.924 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.5 V.
17-03-18 03:07:33.924 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35158 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35157 (-165.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35151 (-165.3 uncal um), Max = 35165 (-165.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:07:33.924 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35158, posNoise = 7, negNoise = 7
17-03-18 03:07:33.924 -07 000000610 INF: Z Motor: After move to -0.166175, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:33.924 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-18 03:07:33.924 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:33.924 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:33.924 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:33.924 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:33.924 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:33.924 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:33.924 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:33.924 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:33.924 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:33.924 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:33.924 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:33.924 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:33.934 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:07:33.934 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:33.934 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:07:33.934 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:33.944 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:07:33.944 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:07:33.944 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:07:33.944 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:07:33.954 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36478 150\n [Camera]
17-03-18 03:07:34.154 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:34.554 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:34.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:34.554 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:34.554 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:34.554 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:07:34.554 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:34.554 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:34.554 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:34.554 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:34.554 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:07:34.744 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36478 787
17-03-18 03:07:34.874 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.03576,
17-03-18 03:07:34.894 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:34.934 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:07:34.934 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:07:34.934 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:34.934 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:07:34.934 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:07:34.934 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:34.934 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:34.934 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:07:34.934 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:34.944 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:07:35.084 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:35.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:35.084 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:35.214 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:35.214 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:35.214 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:35.214 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:35.214 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:07:35.224 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:35.224 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-18 03:07:35.274 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:07:35.284 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:35.284 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36478 150' command took 2 ms to send, 1320 ms to get response, and 1329 ms overall
17-03-18 03:07:35.284 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166615
17-03-18 03:07:35.284 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16662 mm
17-03-18 03:07:35.284 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:35.284 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 36397, sync = True, waitForSettling = False)
17-03-18 03:07:35.284 -07 000000512 INF: Z Motor: Moving to -0.166615 mm, started at -0.166186 mm, distance = -0.43 um
17-03-18 03:07:35.284 -07 000000512 INF: FPGA: Xmit ZDACW 36397\n [Z Motor]
17-03-18 03:07:35.284 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 03:07:35.284 -07 000000606 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 03:07:35.284 -07 000000455 INF: FPGA: Recv ZDACW
17-03-18 03:07:35.294 -07 000000512 INF: FPGA: 'ZDACW 36397' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:07:35.294 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:35.294 -07 000000590 INF: FPGA: Recv ZDACR 36397
17-03-18 03:07:35.304 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:35.304 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:35.304 -07 000000512 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-18 03:07:35.304 -07 000000424 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:07:35.314 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:07:35.314 -07 000000606 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:35.314 -07 000000606 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:35.314 -07 000000606 INF: Y Motor: Moving 1354 steps-33
17-03-18 03:07:35.314 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:35.594 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:07:35.594 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:07:35.594 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:35.604 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:07:35.604 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:07:35.604 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:35.604 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:07:35.604 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:35.604 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-18 03:07:35.614 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:07:35.684 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:07:35.684 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 03:07:35.724 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:35.724 -07 000000576 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:07:35.734 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:35.734 -07 000000606 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:35.734 -07 000000606 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:07:35.734 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.239 mm/sec
17-03-18 03:07:36.544 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:36.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:36.684 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:36.684 -07 000000591 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:07:36.694 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.694 -07 000000606 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:36.714 -07 000000606 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:36.714 -07 000000606 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:36.714 -07 000000606 INF: Y Motor: Moved to 74.0083 after 1427 ms (table move)
17-03-18 03:07:36.714 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166615 mm (DAC = 36397)
17-03-18 03:07:36.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.714 -07 000000590 INF: FPGA: Recv ZSGSRD 35221
17-03-18 03:07:36.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:36.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.724 -07 000000569 INF: FPGA: Recv ZSGSRD 35223
17-03-18 03:07:36.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.734 -07 000000461 INF: FPGA: Recv ZSGSRD 35229
17-03-18 03:07:36.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.744 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.744 -07 000000591 INF: FPGA: Recv ZSGSRD 35229
17-03-18 03:07:36.754 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.754 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.754 -07 000000455 INF: FPGA: Recv ZSGSRD 35223
17-03-18 03:07:36.764 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.764 -07 000000512 INF: FPGA: Recv ZSGSRD 35221
17-03-18 03:07:36.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.774 -07 000000467 INF: FPGA: Recv ZSGSRD 35229
17-03-18 03:07:36.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.784 -07 000000629 INF: FPGA: Recv ZSGSRD 35221
17-03-18 03:07:36.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.794 -07 000000591 INF: FPGA: Recv ZSGSRD 35226
17-03-18 03:07:36.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:36.804 -07 000000576 INF: FPGA: Recv ZSGSRD 35226
17-03-18 03:07:36.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.814 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:36.814 -07 000000618 INF: FPGA: Recv ZPIEZORD 30989
17-03-18 03:07:36.824 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.824 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.3 V.
17-03-18 03:07:36.824 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35225 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35224 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35221 (-165.7 uncal um), Max = 35229 (-165.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:07:36.824 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35225, posNoise = 4, negNoise = 4
17-03-18 03:07:36.824 -07 000000610 INF: Z Motor: After move to -0.166615, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:36.824 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 105 ms (allowed 150 ms), total time = 1535 ms
17-03-18 03:07:36.824 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:36.874 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-18 03:07:36.874 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:36.874 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.166616224704665. ----------
17-03-18 03:07:36.874 -07 000000610 INF: Cycle	108	Tile	18	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:36.874 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36220, sync = True, waitForSettling = True)
17-03-18 03:07:36.874 -07 000000610 INF: Z Motor: Moving to -0.165805 mm, started at -0.166616 mm, distance = 0.81 um
17-03-18 03:07:36.874 -07 000000610 INF: FPGA: Xmit ZDACW 36220\n [Z Motor]
17-03-18 03:07:36.874 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:07:36.884 -07 000000610 INF: FPGA: 'ZDACW 36220' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:36.884 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:36.884 -07 000000579 INF: FPGA: Recv ZDACR 36220
17-03-18 03:07:36.894 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:36.894 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:37.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.044 -07 000000561 INF: FPGA: Recv ZSGSRD 35095
17-03-18 03:07:37.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:37.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.054 -07 000000444 INF: FPGA: Recv ZSGSRD 35109
17-03-18 03:07:37.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.064 -07 000000424 INF: FPGA: Recv ZSGSRD 35100
17-03-18 03:07:37.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.074 -07 000000430 INF: FPGA: Recv ZSGSRD 35100
17-03-18 03:07:37.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.084 -07 000000618 INF: FPGA: Recv ZSGSRD 35102
17-03-18 03:07:37.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.094 -07 000000576 INF: FPGA: Recv ZSGSRD 35100
17-03-18 03:07:37.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.104 -07 000000590 INF: FPGA: Recv ZSGSRD 35100
17-03-18 03:07:37.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.114 -07 000000569 INF: FPGA: Recv ZSGSRD 35096
17-03-18 03:07:37.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.124 -07 000000462 INF: FPGA: Recv ZSGSRD 35098
17-03-18 03:07:37.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:37.134 -07 000000591 INF: FPGA: Recv ZSGSRD 35107
17-03-18 03:07:37.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.144 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:37.144 -07 000000629 INF: FPGA: Recv ZPIEZORD 30783
17-03-18 03:07:37.154 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:37.154 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.5 V.
17-03-18 03:07:37.154 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35101 (-165.0 uncal um), Error = 0.8 uncal um, Median = 35100 (-164.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35095 (-164.9 uncal um), Max = 35109 (-165.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:07:37.154 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35101, posNoise = 8, negNoise = 6
17-03-18 03:07:37.154 -07 000000610 INF: Z Motor: After move to -0.165805, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:37.154 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:07:37.154 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:37.154 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:37.154 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:37.154 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:37.154 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:37.154 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:37.154 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:37.154 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:37.154 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:37.154 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:37.154 -07 000000590 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:37.154 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:37.164 -07 000000590 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:37.164 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:37.164 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:07:37.164 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:37.164 -07 000000590 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:07:37.164 -07 000000590 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:07:37.174 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:07:37.174 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:07:37.174 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36397 150\n [Camera]
17-03-18 03:07:37.374 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:37.774 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:37.774 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:37.774 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:37.784 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:37.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:37.784 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:37.784 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:37.784 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:07:37.784 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:37.784 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:07:37.964 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36397 787
17-03-18 03:07:38.114 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:38.154 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:07:38.154 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:07:38.154 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:38.154 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 03:07:38.154 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 03:07:38.154 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:38.154 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:38.164 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:38.164 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:07:38.164 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:07:38.314 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1133
17-03-18 03:07:38.314 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1133
17-03-18 03:07:38.314 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:38.434 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1133
17-03-18 03:07:38.434 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1133
17-03-18 03:07:38.444 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:38.444 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:38.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:07:38.444 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:38.444 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-18 03:07:38.504 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:07:38.504 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:38.504 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36397 150' command took 2 ms to send, 1322 ms to get response, and 1330 ms overall
17-03-18 03:07:38.504 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-18 03:07:38.504 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165819622399086. ------
17-03-18 03:07:38.504 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:38.514 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17165 mm
17-03-18 03:07:38.514 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:38.514 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:38.514 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:07:38.514 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:07:38.514 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37497, sync = True, waitForSettling = False)
17-03-18 03:07:38.514 -07 000000502 INF: Z Motor: Moving to -0.171650 mm, started at -0.165820 mm, distance = -5.83 um
17-03-18 03:07:38.514 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 03:07:38.514 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 03:07:38.524 -07 000000502 INF: FPGA: Xmit ZDACW 37497\n [Z Motor]
17-03-18 03:07:38.524 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:07:38.534 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:38.534 -07 000000502 INF: FPGA: 'ZDACW 37497' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:07:38.534 -07 000000444 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:07:38.544 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-18 03:07:38.544 -07 000000501 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:38.544 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:38.544 -07 000000501 INF: Y Motor: Moving 1351 steps-29
17-03-18 03:07:38.544 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:38.544 -07 000000591 INF: FPGA: Recv ZDACR 37497
17-03-18 03:07:38.554 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:07:38.554 -07 000000502 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-18 03:07:38.554 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:38.714 -07 000000579 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:07:38.714 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-18 03:07:38.824 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:07:38.824 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:07:38.824 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:38.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:07:38.824 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:07:38.824 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:38.824 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:38.824 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:38.824 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-18 03:07:38.834 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:07:38.924 -07 000000606 INF: FPGA: Recv YMVTILE
17-03-18 03:07:38.924 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-18 03:07:38.954 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:38.964 -07 000000455 INF: FPGA: Recv YRDPOS 153255
17-03-18 03:07:38.964 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:07:38.964 -07 000000501 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:38.964 -07 000000501 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 03:07:38.964 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-18 03:07:39.914 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:39.914 -07 000000444 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:07:39.924 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:39.924 -07 000000501 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:39.944 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:39.944 -07 000000501 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:07:39.944 -07 000000501 INF: Y Motor: Moved to 74.8320 after 1426 ms (table move)
17-03-18 03:07:39.944 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171650 mm (DAC = 37497)
17-03-18 03:07:39.944 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:39.944 -07 000000430 INF: FPGA: Recv ZSGSRD 35999
17-03-18 03:07:39.954 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:07:39.954 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:39.954 -07 000000461 INF: FPGA: Recv ZSGSRD 36004
17-03-18 03:07:39.964 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:39.964 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:39.964 -07 000000462 INF: FPGA: Recv ZSGSRD 36007
17-03-18 03:07:39.974 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:39.974 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:39.974 -07 000000502 INF: FPGA: Recv ZSGSRD 36008
17-03-18 03:07:39.984 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:39.984 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:39.984 -07 000000629 INF: FPGA: Recv ZSGSRD 36011
17-03-18 03:07:39.994 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:39.994 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:39.994 -07 000000591 INF: FPGA: Recv ZSGSRD 36012
17-03-18 03:07:40.004 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:40.004 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:40.004 -07 000000461 INF: FPGA: Recv ZSGSRD 36013
17-03-18 03:07:40.014 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:40.014 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:40.014 -07 000000462 INF: FPGA: Recv ZSGSRD 36016
17-03-18 03:07:40.024 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:40.024 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:40.024 -07 000000576 INF: FPGA: Recv ZSGSRD 36005
17-03-18 03:07:40.034 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:40.034 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:40.034 -07 000000629 INF: FPGA: Recv ZSGSRD 36007
17-03-18 03:07:40.044 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:40.044 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:40.044 -07 000000430 INF: FPGA: Recv ZPIEZORD 32028
17-03-18 03:07:40.054 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:40.054 -07 000000618 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -8.8 V.
17-03-18 03:07:40.054 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36008 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36008 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35999 (-170.7 uncal um), Max = 36016 (-170.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:07:40.054 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36008, posNoise = 8, negNoise = 9
17-03-18 03:07:40.054 -07 000000618 INF: Z Motor: After move to -0.171650, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:40.054 -07 000000618 INF: Z Motor: Settle wait time = 1430 ms, measure time = 106 ms (allowed 150 ms), total time = 1536 ms
17-03-18 03:07:40.054 -07 000000618 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:40.104 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-18 03:07:40.104 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:40.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:40.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:40.104 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:40.104 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:40.104 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:07:40.104 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:40.104 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:07:40.104 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:07:40.114 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:40.114 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:07:40.114 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:07:40.114 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:07:40.124 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:07:40.164 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:07:40.244 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.014009,
17-03-18 03:07:40.464 -07 000000467 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:07:40.464 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:07:40.464 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:07:40.464 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-18 03:07:40.504 -07 000000430 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:07:40.504 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 03:07:40.504 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:07:40.584 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:07:40.584 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:40.584 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:07:40.584 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:07:40.604 -07 000000590 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:40.604 -07 000000512 INF: Autofocus start
17-03-18 03:07:40.604 -07 000000512 INF: MeasureProfile start
17-03-18 03:07:40.604 -07 000000606 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:40.614 -07 000000590 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:40.614 -07 000000590 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:07:40.614 -07 000000512 INF: MeasureProfile done
17-03-18 03:07:40.614 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-18 03:07:40.614 -07 000000512 INF: Autofocus finished
17-03-18 03:07:40.814 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:07:40.814 -07 000000590 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:07:40.814 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.171646382811663. ----------
17-03-18 03:07:40.814 -07 000000610 INF: Cycle	108	Tile	19	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:40.824 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36029, sync = True, waitForSettling = True)
17-03-18 03:07:40.824 -07 000000610 INF: Z Motor: Moving to -0.164930 mm, started at -0.171646 mm, distance = 6.72 um
17-03-18 03:07:40.824 -07 000000610 INF: FPGA: Xmit ZDACW 36029\n [Z Motor]
17-03-18 03:07:40.824 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:07:40.834 -07 000000610 INF: FPGA: 'ZDACW 36029' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:40.834 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:40.834 -07 000000579 INF: FPGA: Recv ZDACR 36029
17-03-18 03:07:40.844 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:40.844 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:40.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:40.994 -07 000000430 INF: FPGA: Recv ZSGSRD 34963
17-03-18 03:07:41.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:41.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:41.004 -07 000000579 INF: FPGA: Recv ZSGSRD 34971
17-03-18 03:07:41.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:41.014 -07 000000462 INF: FPGA: Recv ZSGSRD 34968
17-03-18 03:07:41.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:41.024 -07 000000579 INF: FPGA: Recv ZSGSRD 34968
17-03-18 03:07:41.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:41.034 -07 000000462 INF: FPGA: Recv ZSGSRD 34960
17-03-18 03:07:41.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:41.044 -07 000000579 INF: FPGA: Recv ZSGSRD 34965
17-03-18 03:07:41.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:41.054 -07 000000626 INF: FPGA: Recv ZSGSRD 34963
17-03-18 03:07:41.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:41.064 -07 000000430 INF: FPGA: Recv ZSGSRD 34961
17-03-18 03:07:41.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:41.074 -07 000000629 INF: FPGA: Recv ZSGSRD 34960
17-03-18 03:07:41.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:41.084 -07 000000467 INF: FPGA: Recv ZSGSRD 34961
17-03-18 03:07:41.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.094 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:41.094 -07 000000512 INF: FPGA: Recv ZPIEZORD 30650
17-03-18 03:07:41.104 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:41.104 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.498 V. Piezo Error = -9.5 V.
17-03-18 03:07:41.104 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34964 (-164.1 uncal um), Error = 0.9 uncal um, Median = 34963 (-164.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34960 (-164.1 uncal um), Max = 34971 (-164.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:07:41.104 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34964, posNoise = 7, negNoise = 4
17-03-18 03:07:41.104 -07 000000610 INF: Z Motor: After move to -0.164930, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:41.104 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:07:41.104 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:41.104 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:41.104 -07 000000430 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:41.104 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:41.104 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:41.104 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:41.104 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:41.104 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:41.104 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:07:41.104 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:41.104 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:07:41.104 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:41.114 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-18 03:07:41.114 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:07:41.114 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:41.114 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:41.124 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:07:41.124 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:07:41.124 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:07:41.124 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:07:41.124 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 36206 150\n [Camera]
17-03-18 03:07:41.324 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:41.544 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:41.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:41.724 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:41.724 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:41.724 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:41.724 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:41.724 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:07:41.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:41.724 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:41.724 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:41.724 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:41.724 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:07:41.914 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36206 787
17-03-18 03:07:42.064 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:42.114 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 03:07:42.114 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:07:42.114 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:42.114 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 03:07:42.114 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:07:42.114 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:42.114 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:42.114 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:07:42.124 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:42.124 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-18 03:07:42.264 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:42.264 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:42.264 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:42.264 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:42.264 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:42.264 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:42.264 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:42.264 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:07:42.274 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:42.274 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:07:42.454 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:07:42.454 -07 000000629 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:42.454 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 36206 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-18 03:07:42.654 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-18 03:07:42.654 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:07:42.654 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:42.654 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:42.654 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 385 ms.
17-03-18 03:07:42.654 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:07:42.654 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:42.664 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:42.664 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:07:42.664 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 03:07:42.664 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-18 03:07:42.704 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-18 03:07:42.704 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 03:07:42.744 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-18 03:07:42.744 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-18 03:07:42.744 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-18 03:07:42.744 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-18 03:07:42.754 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:42.754 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-18 03:07:43.254 -07 000000444 INF: FPGA: Recv EMIN
17-03-18 03:07:43.254 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-18 03:07:43.254 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-18 03:07:43.254 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-18 03:07:43.264 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:43.264 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:07:43.264 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.164939505335665. ------
17-03-18 03:07:43.384 -07 000000629 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13953 mm
17-03-18 03:07:43.384 -07 000000629 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:43.384 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:43.384 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-18 03:07:43.384 -07 000000444 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-18 03:07:43.384 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30480, sync = True, waitForSettling = False)
17-03-18 03:07:43.384 -07 000000502 INF: Z Motor: Moving to -0.139528 mm, started at -0.164940 mm, distance = 25.41 um
17-03-18 03:07:43.384 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:43.394 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:07:43.394 -07 000000502 INF: FPGA: Xmit ZDACW 30480\n [Z Motor]
17-03-18 03:07:43.394 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:07:43.404 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:43.404 -07 000000502 INF: FPGA: 'ZDACW 30480' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:07:43.404 -07 000000591 INF: FPGA: Recv YRDPOS 153257
17-03-18 03:07:43.414 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:07:43.414 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:07:43.414 -07 000000444 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:43.414 -07 000000444 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-18 03:07:43.414 -07 000000444 INF: Y Motor: Moving to 122701 encoder counts
17-03-18 03:07:43.424 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:43.424 -07 000000455 INF: FPGA: Recv ZDACR 30480
17-03-18 03:07:43.434 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:07:43.434 -07 000000502 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 03:07:43.434 -07 000000444 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-18 03:07:43.614 -07 000000591 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:07:43.614 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:07:45.054 -07 000000576 INF: FPGA: Recv YMVTO 122703 23904
17-03-18 03:07:45.054 -07 000000444 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-18 03:07:45.054 -07 000000444 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-18 03:07:45.054 -07 000000444 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-18 03:07:45.054 -07 000000444 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-18 03:07:45.604 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.06299,
17-03-18 03:07:46.544 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:46.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:47.904 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:47.904 -07 000000455 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:07:47.914 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:47.914 -07 000000444 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:47.944 -07 000000444 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:47.944 -07 000000444 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-18 03:07:47.944 -07 000000444 INF: Y Motor: Moved to 59.9106 after 4562 ms
17-03-18 03:07:47.954 -07 000000629 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139528 mm (DAC = 30480)
17-03-18 03:07:47.954 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:47.954 -07 000000501 INF: FPGA: Recv ZSGSRD 31008
17-03-18 03:07:47.964 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:47.964 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:47.964 -07 000000512 INF: FPGA: Recv ZSGSRD 31012
17-03-18 03:07:47.974 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:47.974 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:47.974 -07 000000467 INF: FPGA: Recv ZSGSRD 31015
17-03-18 03:07:47.984 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:47.984 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:47.984 -07 000000618 INF: FPGA: Recv ZSGSRD 31008
17-03-18 03:07:47.994 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:47.994 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:47.994 -07 000000424 INF: FPGA: Recv ZSGSRD 31014
17-03-18 03:07:48.004 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:48.004 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:48.004 -07 000000461 INF: FPGA: Recv ZSGSRD 31010
17-03-18 03:07:48.014 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:48.014 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:48.014 -07 000000502 INF: FPGA: Recv ZSGSRD 31012
17-03-18 03:07:48.024 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:48.024 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:48.024 -07 000000444 INF: FPGA: Recv ZSGSRD 31015
17-03-18 03:07:48.034 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:48.034 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:48.034 -07 000000467 INF: FPGA: Recv ZSGSRD 31010
17-03-18 03:07:48.044 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:48.044 -07 000000629 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:48.044 -07 000000462 INF: FPGA: Recv ZSGSRD 31015
17-03-18 03:07:48.054 -07 000000629 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:48.054 -07 000000629 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:48.054 -07 000000626 INF: FPGA: Recv ZPIEZORD 26469
17-03-18 03:07:48.064 -07 000000629 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:48.064 -07 000000629 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -10.0 V.
17-03-18 03:07:48.064 -07 000000629 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31012 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31012 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 31008 (-138.7 uncal um), Max = 31015 (-138.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:07:48.064 -07 000000629 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31012, posNoise = 3, negNoise = 4
17-03-18 03:07:48.064 -07 000000629 INF: Z Motor: After move to -0.139528, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:48.064 -07 000000629 INF: Z Motor: Settle wait time = 4565 ms, measure time = 109 ms (allowed 150 ms), total time = 4674 ms
17-03-18 03:07:48.064 -07 000000629 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:48.114 -07 000000629 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4727 ms
17-03-18 03:07:48.114 -07 000000629 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:48.114 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:48.114 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:48.114 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:48.114 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:48.114 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:07:48.114 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:48.114 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:48.114 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-18 03:07:48.144 -07 000000591 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-18 03:07:48.144 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:07:48.144 -07 000000591 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-18 03:07:48.144 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:07:48.154 -07 000000591 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-18 03:07:48.154 -07 000000591 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-18 03:07:48.164 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:07:48.204 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:07:48.504 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:07:48.504 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:07:48.504 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:07:48.504 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-18 03:07:48.544 -07 000000590 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:07:48.544 -07 000000444 INF: FPGA: Recv CAMSNAP
17-03-18 03:07:48.544 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall
17-03-18 03:07:48.624 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-18 03:07:48.624 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:48.624 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:07:48.624 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:07:48.644 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:48.644 -07 000000461 INF: Image SNR check: start
17-03-18 03:07:48.644 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:48.654 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:48.654 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:07:48.664 -07 000000461 INF: Image SNR check: pass  [peak (Max-Min)=139.94]
17-03-18 03:07:48.664 -07 000000461 INF: Autofocus start
17-03-18 03:07:48.664 -07 000000461 INF: MeasureProfile start
17-03-18 03:07:48.674 -07 000000461 INF: MeasureProfile done
17-03-18 03:07:48.674 -07 000000461 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:07:48.674 -07 000000461 INF: Autofocus finished
17-03-18 03:07:48.854 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:07:48.854 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:07:48.854 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.139551018951426. ----------
17-03-18 03:07:48.854 -07 000000610 INF: Cycle	108	Tile	1	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:48.864 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28987, sync = True, waitForSettling = True)
17-03-18 03:07:48.864 -07 000000610 INF: Z Motor: Moving to -0.132694 mm, started at -0.139551 mm, distance = 6.86 um
17-03-18 03:07:48.864 -07 000000610 INF: FPGA: Xmit ZDACW 28987\n [Z Motor]
17-03-18 03:07:48.864 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 03:07:48.874 -07 000000610 INF: FPGA: 'ZDACW 28987' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:07:48.874 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:48.874 -07 000000569 INF: FPGA: Recv ZDACR 28987
17-03-18 03:07:48.884 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:48.884 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:49.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.034 -07 000000590 INF: FPGA: Recv ZSGSRD 29941
17-03-18 03:07:49.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:49.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.044 -07 000000629 INF: FPGA: Recv ZSGSRD 29946
17-03-18 03:07:49.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.054 -07 000000467 INF: FPGA: Recv ZSGSRD 29952
17-03-18 03:07:49.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.064 -07 000000461 INF: FPGA: Recv ZSGSRD 29942
17-03-18 03:07:49.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.074 -07 000000424 INF: FPGA: Recv ZSGSRD 29946
17-03-18 03:07:49.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.084 -07 000000626 INF: FPGA: Recv ZSGSRD 29938
17-03-18 03:07:49.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.094 -07 000000618 INF: FPGA: Recv ZSGSRD 29951
17-03-18 03:07:49.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.104 -07 000000455 INF: FPGA: Recv ZSGSRD 29947
17-03-18 03:07:49.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.114 -07 000000591 INF: FPGA: Recv ZSGSRD 29939
17-03-18 03:07:49.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:49.124 -07 000000512 INF: FPGA: Recv ZSGSRD 29947
17-03-18 03:07:49.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:49.134 -07 000000590 INF: FPGA: Recv ZPIEZORD 25313
17-03-18 03:07:49.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:49.144 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.423 V. Piezo Error = -10.2 V.
17-03-18 03:07:49.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29945 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29946 (-131.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29938 (-131.9 uncal um), Max = 29952 (-132.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:07:49.144 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29945, posNoise = 7, negNoise = 7
17-03-18 03:07:49.144 -07 000000610 INF: Z Motor: After move to -0.132694, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:49.144 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:07:49.144 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:49.144 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:49.144 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:49.144 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:49.144 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:49.144 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:49.144 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:49.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:49.144 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:49.144 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:49.144 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:49.144 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-18 03:07:49.154 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:07:49.154 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:49.164 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:07:49.164 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:07:49.174 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-18 03:07:49.174 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:49.174 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:07:49.174 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:49.184 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:07:49.184 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 37 ms.
17-03-18 03:07:49.184 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29164 150\n [Camera]
17-03-18 03:07:49.384 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:49.784 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:49.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:49.784 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:49.784 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:49.784 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:49.794 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:49.794 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:49.794 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:07:49.794 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:49.794 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:07:49.984 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29164 787
17-03-18 03:07:50.124 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:50.164 -07 000000467 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 03:07:50.164 -07 000000467 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 03:07:50.164 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:50.164 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:07:50.164 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:07:50.164 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:50.174 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:50.174 -07 000000467 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:07:50.174 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:50.184 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:07:50.324 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:50.324 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:50.324 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:50.324 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:50.324 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:50.324 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:50.324 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:50.324 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:07:50.444 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:50.444 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 03:07:50.514 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1325
17-03-18 03:07:50.514 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:50.514 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29164 150' command took 2 ms to send, 1326 ms to get response, and 1332 ms overall
17-03-18 03:07:50.514 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133171
17-03-18 03:07:50.514 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13317 mm
17-03-18 03:07:50.514 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:50.524 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-18 03:07:50.524 -07 000000467 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-18 03:07:50.524 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:50.524 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29091, sync = True, waitForSettling = False)
17-03-18 03:07:50.524 -07 000000461 INF: Z Motor: Moving to -0.133170 mm, started at -0.132696 mm, distance = -0.47 um
17-03-18 03:07:50.524 -07 000000501 INF: FPGA: Recv YRDPOS 122697
17-03-18 03:07:50.534 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:50.534 -07 000000467 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:50.534 -07 000000461 INF: FPGA: Xmit ZDACW 29091\n [Z Motor]
17-03-18 03:07:50.534 -07 000000467 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:50.534 -07 000000467 INF: Y Motor: Moving 1331 steps2
17-03-18 03:07:50.534 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:07:50.544 -07 000000461 INF: FPGA: 'ZDACW 29091' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:07:50.544 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:50.544 -07 000000579 INF: FPGA: Recv ZDACR 29091
17-03-18 03:07:50.554 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:50.554 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:50.554 -07 000000461 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 03:07:50.704 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:07:50.704 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:07:50.704 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:50.704 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:50.714 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:07:50.814 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 03:07:50.814 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:07:50.814 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:50.814 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-18 03:07:50.814 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-18 03:07:50.924 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:07:50.924 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:07:50.964 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.99219,
17-03-18 03:07:50.984 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:50.984 -07 000000606 INF: FPGA: Recv YRDPOS 124381
17-03-18 03:07:50.994 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-18 03:07:50.994 -07 000000467 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:50.994 -07 000000467 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-18 03:07:50.994 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-18 03:07:51.544 -07 000000606 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:51.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:51.944 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:51.944 -07 000000444 INF: FPGA: Recv YRDPOS 124382
17-03-18 03:07:51.954 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:51.954 -07 000000467 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:51.974 -07 000000467 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:51.974 -07 000000467 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:07:51.974 -07 000000467 INF: Y Motor: Moved to 60.7334 after 1457 ms (table move)
17-03-18 03:07:51.984 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133170 mm (DAC = 29091)
17-03-18 03:07:51.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:51.984 -07 000000606 INF: FPGA: Recv ZSGSRD 30011
17-03-18 03:07:51.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:51.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:51.994 -07 000000590 INF: FPGA: Recv ZSGSRD 30022
17-03-18 03:07:52.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.004 -07 000000579 INF: FPGA: Recv ZSGSRD 30031
17-03-18 03:07:52.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.014 -07 000000444 INF: FPGA: Recv ZSGSRD 30017
17-03-18 03:07:52.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.024 -07 000000512 INF: FPGA: Recv ZSGSRD 30019
17-03-18 03:07:52.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.034 -07 000000424 INF: FPGA: Recv ZSGSRD 30018
17-03-18 03:07:52.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.044 -07 000000590 INF: FPGA: Recv ZSGSRD 30022
17-03-18 03:07:52.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.054 -07 000000461 INF: FPGA: Recv ZSGSRD 30022
17-03-18 03:07:52.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.064 -07 000000629 INF: FPGA: Recv ZSGSRD 30013
17-03-18 03:07:52.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.074 -07 000000576 INF: FPGA: Recv ZSGSRD 30028
17-03-18 03:07:52.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:52.084 -07 000000606 INF: FPGA: Recv ZPIEZORD 25510
17-03-18 03:07:52.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.094 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.9 V.
17-03-18 03:07:52.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30020 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30020 (-132.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30011 (-132.3 uncal um), Max = 30031 (-132.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:07:52.094 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30020, posNoise = 11, negNoise = 9
17-03-18 03:07:52.094 -07 000000610 INF: Z Motor: After move to -0.133170, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:52.094 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 109 ms (allowed 150 ms), total time = 1568 ms
17-03-18 03:07:52.094 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:52.144 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1621 ms
17-03-18 03:07:52.144 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:52.144 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.133178200506799. ----------
17-03-18 03:07:52.144 -07 000000610 INF: Cycle	108	Tile	2	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:52.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28914, sync = True, waitForSettling = True)
17-03-18 03:07:52.144 -07 000000610 INF: Z Motor: Moving to -0.132360 mm, started at -0.133178 mm, distance = 0.82 um
17-03-18 03:07:52.144 -07 000000610 INF: FPGA: Xmit ZDACW 28914\n [Z Motor]
17-03-18 03:07:52.144 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:07:52.154 -07 000000610 INF: FPGA: 'ZDACW 28914' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:52.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:52.154 -07 000000579 INF: FPGA: Recv ZDACR 28914
17-03-18 03:07:52.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:52.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.314 -07 000000569 INF: FPGA: Recv ZSGSRD 29893
17-03-18 03:07:52.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:52.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.324 -07 000000576 INF: FPGA: Recv ZSGSRD 29898
17-03-18 03:07:52.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.334 -07 000000606 INF: FPGA: Recv ZSGSRD 29900
17-03-18 03:07:52.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.344 -07 000000561 INF: FPGA: Recv ZSGSRD 29892
17-03-18 03:07:52.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.354 -07 000000455 INF: FPGA: Recv ZSGSRD 29891
17-03-18 03:07:52.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.364 -07 000000626 INF: FPGA: Recv ZSGSRD 29897
17-03-18 03:07:52.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.374 -07 000000590 INF: FPGA: Recv ZSGSRD 29896
17-03-18 03:07:52.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.384 -07 000000461 INF: FPGA: Recv ZSGSRD 29896
17-03-18 03:07:52.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.394 -07 000000502 INF: FPGA: Recv ZSGSRD 29895
17-03-18 03:07:52.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:52.404 -07 000000579 INF: FPGA: Recv ZSGSRD 29892
17-03-18 03:07:52.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:52.414 -07 000000444 INF: FPGA: Recv ZPIEZORD 25306
17-03-18 03:07:52.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:52.424 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -10.1 V.
17-03-18 03:07:52.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29895 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29896 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29891 (-131.6 uncal um), Max = 29900 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:07:52.424 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29895, posNoise = 5, negNoise = 4
17-03-18 03:07:52.424 -07 000000610 INF: Z Motor: After move to -0.132360, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:52.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:07:52.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:52.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:52.424 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:52.424 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:52.424 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:52.424 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:52.424 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:52.424 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:52.424 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:52.424 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:52.424 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:52.424 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:52.434 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:07:52.434 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:52.434 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:07:52.434 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:52.444 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:07:52.444 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:07:52.444 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:07:52.444 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:07:52.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29091 150\n [Camera]
17-03-18 03:07:52.644 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:53.054 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:53.054 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:53.054 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:53.054 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:53.054 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:53.054 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:53.054 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:53.054 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:07:53.064 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:53.064 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 03:07:53.244 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29091 787
17-03-18 03:07:53.394 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:53.454 -07 000000590 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-18 03:07:53.454 -07 000000590 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:07:53.454 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:53.454 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 395 ms.
17-03-18 03:07:53.454 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:07:53.454 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:53.454 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:53.454 -07 000000590 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-18 03:07:53.464 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:53.464 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-18 03:07:53.584 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:53.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:53.584 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:53.584 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:53.584 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:07:53.594 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:53.594 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:53.594 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:53.594 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:53.594 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:07:53.774 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:07:53.784 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:53.784 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29091 150' command took 2 ms to send, 1322 ms to get response, and 1332 ms overall
17-03-18 03:07:53.784 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:07:53.784 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.132375173989079. ------
17-03-18 03:07:53.784 -07 000000467 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:53.784 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13908 mm
17-03-18 03:07:53.784 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:53.794 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:53.794 -07 000000467 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:07:53.794 -07 000000467 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:07:53.794 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-18 03:07:53.794 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-18 03:07:53.794 -07 000000629 INF: Z Motor: Entering MoveAbsStepped (DAC = 30382, sync = True, waitForSettling = False)
17-03-18 03:07:53.794 -07 000000629 INF: Z Motor: Moving to -0.139080 mm, started at -0.132375 mm, distance = -6.70 um
17-03-18 03:07:53.804 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:53.804 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-18 03:07:53.814 -07 000000629 INF: FPGA: Xmit ZDACW 30382\n [Z Motor]
17-03-18 03:07:53.814 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:07:53.814 -07 000000501 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:53.814 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:53.814 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-18 03:07:53.814 -07 000000569 INF: FPGA: Recv ZDACW
17-03-18 03:07:53.824 -07 000000629 INF: FPGA: 'ZDACW 30382' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 03:07:53.824 -07 000000629 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:53.824 -07 000000576 INF: FPGA: Recv ZDACR 30382
17-03-18 03:07:53.834 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:53.834 -07 000000629 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:53.834 -07 000000629 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-18 03:07:53.984 -07 000000461 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 393 ms.
17-03-18 03:07:53.984 -07 000000461 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:07:53.984 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:53.984 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:07:53.984 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:07:53.984 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:53.984 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:53.994 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:07:53.994 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-18 03:07:53.994 -07 000000606 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:07:53.994 -07 000000467 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-18 03:07:53.994 -07 000000461 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-18 03:07:54.204 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-18 03:07:54.204 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:07:54.254 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:54.254 -07 000000591 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:07:54.264 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:54.264 -07 000000501 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:54.264 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:07:54.264 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-18 03:07:55.214 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:55.214 -07 000000569 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:07:55.224 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:55.224 -07 000000501 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:55.244 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:55.244 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:55.244 -07 000000501 INF: Y Motor: Moved to 61.5640 after 1456 ms (table move)
17-03-18 03:07:55.254 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139080 mm (DAC = 30382)
17-03-18 03:07:55.254 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.254 -07 000000462 INF: FPGA: Recv ZSGSRD 30946
17-03-18 03:07:55.264 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:07:55.264 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.264 -07 000000629 INF: FPGA: Recv ZSGSRD 30940
17-03-18 03:07:55.274 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.274 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.274 -07 000000618 INF: FPGA: Recv ZSGSRD 30944
17-03-18 03:07:55.284 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.284 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.284 -07 000000502 INF: FPGA: Recv ZSGSRD 30945
17-03-18 03:07:55.294 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.294 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.294 -07 000000501 INF: FPGA: Recv ZSGSRD 30938
17-03-18 03:07:55.304 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.304 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.304 -07 000000430 INF: FPGA: Recv ZSGSRD 30940
17-03-18 03:07:55.314 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.314 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.314 -07 000000461 INF: FPGA: Recv ZSGSRD 30942
17-03-18 03:07:55.324 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.324 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.324 -07 000000591 INF: FPGA: Recv ZSGSRD 30937
17-03-18 03:07:55.334 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.334 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.334 -07 000000424 INF: FPGA: Recv ZSGSRD 30940
17-03-18 03:07:55.344 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.344 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:55.344 -07 000000502 INF: FPGA: Recv ZSGSRD 30939
17-03-18 03:07:55.354 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.354 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:55.354 -07 000000430 INF: FPGA: Recv ZPIEZORD 26723
17-03-18 03:07:55.364 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:55.364 -07 000000561 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -9.3 V.
17-03-18 03:07:55.364 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30941 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30940 (-138.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30937 (-138.3 uncal um), Max = 30946 (-138.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:07:55.364 -07 000000561 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30941, posNoise = 5, negNoise = 4
17-03-18 03:07:55.364 -07 000000561 INF: Z Motor: After move to -0.139080, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:55.364 -07 000000561 INF: Z Motor: Settle wait time = 1459 ms, measure time = 108 ms (allowed 150 ms), total time = 1567 ms
17-03-18 03:07:55.364 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:55.414 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-18 03:07:55.414 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:55.414 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:55.414 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:55.414 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:55.414 -07 000000591 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:55.414 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:07:55.414 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:55.414 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-18 03:07:55.414 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:07:55.424 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:55.424 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:07:55.434 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-18 03:07:55.434 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-18 03:07:55.444 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:07:55.484 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:07:55.784 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:07:55.784 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:07:55.784 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:07:55.784 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-18 03:07:55.824 -07 000000461 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:07:55.824 -07 000000629 INF: FPGA: Recv CAMSNAP
17-03-18 03:07:55.824 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 388 ms overall
17-03-18 03:07:55.914 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-18 03:07:55.914 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:55.914 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:07:55.914 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-18 03:07:55.924 -07 000000561 INF: Autofocus start
17-03-18 03:07:55.924 -07 000000561 INF: MeasureProfile start
17-03-18 03:07:55.924 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:07:55.924 -07 000000629 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:07:55.934 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:55.934 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:07:55.934 -07 000000561 INF: MeasureProfile done
17-03-18 03:07:55.934 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-18 03:07:55.934 -07 000000561 INF: Autofocus finished
17-03-18 03:07:56.134 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:07:56.134 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:07:56.134 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139094899889361. ----------
17-03-18 03:07:56.134 -07 000000610 INF: Cycle	108	Tile	3	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:56.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28889, sync = True, waitForSettling = True)
17-03-18 03:07:56.144 -07 000000610 INF: Z Motor: Moving to -0.132245 mm, started at -0.139095 mm, distance = 6.85 um
17-03-18 03:07:56.144 -07 000000610 INF: FPGA: Xmit ZDACW 28889\n [Z Motor]
17-03-18 03:07:56.144 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:07:56.154 -07 000000610 INF: FPGA: 'ZDACW 28889' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:07:56.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:56.154 -07 000000629 INF: FPGA: Recv ZDACR 28889
17-03-18 03:07:56.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:56.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:56.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.314 -07 000000462 INF: FPGA: Recv ZSGSRD 29869
17-03-18 03:07:56.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:56.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.334 -07 000000461 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.015368,
17-03-18 03:07:56.334 -07 000000626 INF: FPGA: Recv ZSGSRD 29885
17-03-18 03:07:56.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:56.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.344 -07 000000618 INF: FPGA: Recv ZSGSRD 29877
17-03-18 03:07:56.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:56.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.364 -07 000000626 INF: FPGA: Recv ZSGSRD 29879
17-03-18 03:07:56.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:56.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.374 -07 000000462 INF: FPGA: Recv ZSGSRD 29882
17-03-18 03:07:56.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:56.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.404 -07 000000591 INF: FPGA: Recv ZSGSRD 29879
17-03-18 03:07:56.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:07:56.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.424 -07 000000606 INF: FPGA: Recv ZSGSRD 29874
17-03-18 03:07:56.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:07:56.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.434 -07 000000561 INF: FPGA: Recv ZSGSRD 29870
17-03-18 03:07:56.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:56.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.444 -07 000000618 INF: FPGA: Recv ZSGSRD 29876
17-03-18 03:07:56.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:56.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:56.454 -07 000000461 INF: FPGA: Recv ZSGSRD 29885
17-03-18 03:07:56.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:56.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:56.464 -07 000000501 INF: FPGA: Recv ZPIEZORD 25307
17-03-18 03:07:56.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:56.474 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -10.0 V.
17-03-18 03:07:56.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29878 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29878 (-131.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29869 (-131.4 uncal um), Max = 29885 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:07:56.474 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29878, posNoise = 7, negNoise = 9
17-03-18 03:07:56.474 -07 000000610 INF: Z Motor: After move to -0.132245, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:56.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-18 03:07:56.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:56.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:56.474 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:56.474 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:56.474 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:56.474 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:56.474 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:56.474 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:56.474 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:56.474 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:56.474 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:07:56.474 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:56.484 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:07:56.484 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:56.484 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:07:56.484 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:56.494 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-18 03:07:56.494 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:07:56.494 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-18 03:07:56.494 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:07:56.504 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 29066 150\n [Camera]
17-03-18 03:07:56.544 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:07:56.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:07:56.694 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:07:57.104 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:07:57.104 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:07:57.104 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:57.104 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:57.104 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:07:57.104 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:07:57.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:07:57.104 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:57.104 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:57.104 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:07:57.294 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29066 787
17-03-18 03:07:57.444 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:07:57.474 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:07:57.474 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:07:57.474 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:57.474 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:07:57.484 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 03:07:57.484 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:57.484 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:57.484 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:07:57.484 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:07:57.494 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-18 03:07:57.634 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:07:57.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:07:57.634 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:07:57.634 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:07:57.634 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:07:57.644 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:07:57.644 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:07:57.644 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:07:57.644 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:07:57.644 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:07:57.824 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:07:57.824 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:07:57.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 29066 150' command took 2 ms to send, 1319 ms to get response, and 1329 ms overall
17-03-18 03:07:57.834 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132649
17-03-18 03:07:57.834 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13265 mm
17-03-18 03:07:57.834 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:07:57.834 -07 000000467 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-18 03:07:57.834 -07 000000467 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-18 03:07:57.834 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 28977, sync = True, waitForSettling = False)
17-03-18 03:07:57.834 -07 000000461 INF: Z Motor: Moving to -0.132648 mm, started at -0.132266 mm, distance = -0.38 um
17-03-18 03:07:57.834 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:57.834 -07 000000591 INF: FPGA: Recv YRDPOS 126083
17-03-18 03:07:57.844 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:07:57.844 -07 000000467 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:57.844 -07 000000467 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:07:57.844 -07 000000467 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:07:57.844 -07 000000461 INF: FPGA: Xmit ZDACW 28977\n [Z Motor]
17-03-18 03:07:57.844 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:07:57.854 -07 000000461 INF: FPGA: 'ZDACW 28977' command took 1 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:07:57.854 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:57.854 -07 000000590 INF: FPGA: Recv ZDACR 28977
17-03-18 03:07:57.864 -07 000000467 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:07:57.864 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:57.864 -07 000000461 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 03:07:58.024 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:07:58.024 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:07:58.024 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:58.024 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-18 03:07:58.024 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:07:58.024 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:07:58.024 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:07:58.034 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-18 03:07:58.034 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-18 03:07:58.034 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:07:58.234 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:07:58.234 -07 000000467 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:07:58.284 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:58.284 -07 000000455 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:07:58.294 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:58.294 -07 000000467 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:58.294 -07 000000467 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-18 03:07:58.294 -07 000000467 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-18 03:07:59.244 -07 000000467 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:07:59.244 -07 000000461 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:07:59.254 -07 000000467 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:59.254 -07 000000467 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:07:59.274 -07 000000467 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:07:59.274 -07 000000467 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:07:59.274 -07 000000467 INF: Y Motor: Moved to 62.3955 after 1444 ms (table move)
17-03-18 03:07:59.284 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132648 mm (DAC = 28977)
17-03-18 03:07:59.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.284 -07 000000512 INF: FPGA: Recv ZSGSRD 29941
17-03-18 03:07:59.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:07:59.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.294 -07 000000579 INF: FPGA: Recv ZSGSRD 29938
17-03-18 03:07:59.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.304 -07 000000462 INF: FPGA: Recv ZSGSRD 29938
17-03-18 03:07:59.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.314 -07 000000569 INF: FPGA: Recv ZSGSRD 29936
17-03-18 03:07:59.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.324 -07 000000626 INF: FPGA: Recv ZSGSRD 29941
17-03-18 03:07:59.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.334 -07 000000501 INF: FPGA: Recv ZSGSRD 29939
17-03-18 03:07:59.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.344 -07 000000424 INF: FPGA: Recv ZSGSRD 29935
17-03-18 03:07:59.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.354 -07 000000590 INF: FPGA: Recv ZSGSRD 29937
17-03-18 03:07:59.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.364 -07 000000455 INF: FPGA: Recv ZSGSRD 29942
17-03-18 03:07:59.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.374 -07 000000591 INF: FPGA: Recv ZSGSRD 29941
17-03-18 03:07:59.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.384 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:59.384 -07 000000576 INF: FPGA: Recv ZPIEZORD 25457
17-03-18 03:07:59.394 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.394 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.422 V. Piezo Error = -9.8 V.
17-03-18 03:07:59.394 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29939 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29938 (-131.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29935 (-131.8 uncal um), Max = 29942 (-131.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:07:59.394 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29939, posNoise = 3, negNoise = 4
17-03-18 03:07:59.394 -07 000000610 INF: Z Motor: After move to -0.132648, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:59.394 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 107 ms (allowed 150 ms), total time = 1555 ms
17-03-18 03:07:59.394 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:07:59.444 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 03:07:59.444 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:07:59.444 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.132657839323316. ----------
17-03-18 03:07:59.444 -07 000000610 INF: Cycle	108	Tile	4	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:07:59.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28800, sync = True, waitForSettling = True)
17-03-18 03:07:59.444 -07 000000610 INF: Z Motor: Moving to -0.131838 mm, started at -0.132658 mm, distance = 0.82 um
17-03-18 03:07:59.444 -07 000000610 INF: FPGA: Xmit ZDACW 28800\n [Z Motor]
17-03-18 03:07:59.444 -07 000000626 INF: FPGA: Recv ZDACW
17-03-18 03:07:59.454 -07 000000610 INF: FPGA: 'ZDACW 28800' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:07:59.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:07:59.454 -07 000000501 INF: FPGA: Recv ZDACR 28800
17-03-18 03:07:59.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:07:59.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.614 -07 000000569 INF: FPGA: Recv ZSGSRD 29812
17-03-18 03:07:59.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:07:59.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.624 -07 000000424 INF: FPGA: Recv ZSGSRD 29812
17-03-18 03:07:59.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.634 -07 000000591 INF: FPGA: Recv ZSGSRD 29811
17-03-18 03:07:59.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.644 -07 000000462 INF: FPGA: Recv ZSGSRD 29812
17-03-18 03:07:59.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.654 -07 000000591 INF: FPGA: Recv ZSGSRD 29812
17-03-18 03:07:59.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.664 -07 000000444 INF: FPGA: Recv ZSGSRD 29807
17-03-18 03:07:59.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.674 -07 000000467 INF: FPGA: Recv ZSGSRD 29819
17-03-18 03:07:59.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.684 -07 000000512 INF: FPGA: Recv ZSGSRD 29814
17-03-18 03:07:59.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.694 -07 000000424 INF: FPGA: Recv ZSGSRD 29817
17-03-18 03:07:59.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:07:59.704 -07 000000455 INF: FPGA: Recv ZSGSRD 29812
17-03-18 03:07:59.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:07:59.714 -07 000000569 INF: FPGA: Recv ZPIEZORD 25288
17-03-18 03:07:59.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:07:59.724 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.395 V. Piezo Error = -9.9 V.
17-03-18 03:07:59.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29813 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29812 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29807 (-131.0 uncal um), Max = 29819 (-131.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:07:59.724 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29813, posNoise = 6, negNoise = 6
17-03-18 03:07:59.724 -07 000000610 INF: Z Motor: After move to -0.131838, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:07:59.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:07:59.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:07:59.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:07:59.724 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:07:59.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:07:59.724 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:07:59.724 -07 000000461 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:07:59.724 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:07:59.724 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:07:59.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:07:59.724 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:07:59.724 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:07:59.724 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:07:59.724 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:07:59.724 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:07:59.724 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:07:59.724 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:07:59.734 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:07:59.734 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:07:59.734 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:07:59.734 -07 000000455 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:07:59.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28977 150\n [Camera]
17-03-18 03:07:59.944 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:00.344 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:00.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:00.344 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:00.344 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:00.344 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-18 03:08:00.344 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:00.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:00.344 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:00.344 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:00.344 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-18 03:08:00.534 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28977 787
17-03-18 03:08:00.684 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:00.724 -07 000000629 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:08:00.724 -07 000000629 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:08:00.724 -07 000000629 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:00.724 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:08:00.724 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:08:00.724 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:00.724 -07 000000629 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:00.724 -07 000000629 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:08:00.724 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:00.734 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:08:00.874 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:00.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:00.884 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:00.884 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:00.884 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-18 03:08:00.884 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:00.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:00.884 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:00.884 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:00.884 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-18 03:08:01.074 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:01.074 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:01.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28977 150' command took 2 ms to send, 1321 ms to get response, and 1330 ms overall
17-03-18 03:08:01.074 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132492
17-03-18 03:08:01.074 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13249 mm
17-03-18 03:08:01.074 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:01.074 -07 000000444 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-18 03:08:01.074 -07 000000444 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-18 03:08:01.074 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:01.074 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 28943, sync = True, waitForSettling = False)
17-03-18 03:08:01.074 -07 000000461 INF: Z Motor: Moving to -0.132493 mm, started at -0.131848 mm, distance = -0.64 um
17-03-18 03:08:01.084 -07 000000462 INF: FPGA: Recv YRDPOS 127786
17-03-18 03:08:01.084 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:01.084 -07 000000444 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:01.084 -07 000000444 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:01.084 -07 000000444 INF: Y Motor: Moving 1339 steps-15
17-03-18 03:08:01.084 -07 000000461 INF: FPGA: Xmit ZDACW 28943\n [Z Motor]
17-03-18 03:08:01.084 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 03:08:01.094 -07 000000461 INF: FPGA: 'ZDACW 28943' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-18 03:08:01.094 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:01.094 -07 000000501 INF: FPGA: Recv ZDACR 28943
17-03-18 03:08:01.104 -07 000000444 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:01.104 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:01.104 -07 000000461 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 03:08:01.274 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 390 ms.
17-03-18 03:08:01.274 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-18 03:08:01.274 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:01.274 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 03:08:01.274 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:01.274 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:08:01.274 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:08:01.274 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:01.284 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:01.284 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:08:01.474 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:08:01.474 -07 000000444 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:08:01.524 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:01.524 -07 000000590 INF: FPGA: Recv YRDPOS 129482
17-03-18 03:08:01.534 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:01.534 -07 000000444 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:01.534 -07 000000444 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:08:01.534 -07 000000444 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-18 03:08:01.544 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:01.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:01.744 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.996267,
17-03-18 03:08:02.484 -07 000000444 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:02.484 -07 000000561 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:08:02.494 -07 000000444 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:02.494 -07 000000444 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:02.514 -07 000000444 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:02.514 -07 000000444 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:08:02.514 -07 000000444 INF: Y Motor: Moved to 63.2241 after 1442 ms (table move)
17-03-18 03:08:02.524 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132493 mm (DAC = 28943)
17-03-18 03:08:02.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.524 -07 000000512 INF: FPGA: Recv ZSGSRD 29920
17-03-18 03:08:02.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:08:02.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.534 -07 000000569 INF: FPGA: Recv ZSGSRD 29911
17-03-18 03:08:02.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.544 -07 000000512 INF: FPGA: Recv ZSGSRD 29916
17-03-18 03:08:02.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.554 -07 000000569 INF: FPGA: Recv ZSGSRD 29919
17-03-18 03:08:02.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.564 -07 000000512 INF: FPGA: Recv ZSGSRD 29917
17-03-18 03:08:02.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.574 -07 000000626 INF: FPGA: Recv ZSGSRD 29916
17-03-18 03:08:02.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.584 -07 000000590 INF: FPGA: Recv ZSGSRD 29915
17-03-18 03:08:02.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.594 -07 000000576 INF: FPGA: Recv ZSGSRD 29908
17-03-18 03:08:02.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.604 -07 000000569 INF: FPGA: Recv ZSGSRD 29915
17-03-18 03:08:02.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.614 -07 000000512 INF: FPGA: Recv ZSGSRD 29911
17-03-18 03:08:02.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:02.624 -07 000000501 INF: FPGA: Recv ZPIEZORD 25471
17-03-18 03:08:02.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.634 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.8 V.
17-03-18 03:08:02.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29915 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29916 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29908 (-131.7 uncal um), Max = 29920 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:08:02.634 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29915, posNoise = 5, negNoise = 7
17-03-18 03:08:02.634 -07 000000610 INF: Z Motor: After move to -0.132493, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:02.634 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 107 ms (allowed 150 ms), total time = 1552 ms
17-03-18 03:08:02.634 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:02.684 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-18 03:08:02.684 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:02.684 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.132503658231914. ----------
17-03-18 03:08:02.684 -07 000000610 INF: Cycle	108	Tile	5	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:02.684 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28766, sync = True, waitForSettling = True)
17-03-18 03:08:02.684 -07 000000610 INF: Z Motor: Moving to -0.131682 mm, started at -0.132504 mm, distance = 0.82 um
17-03-18 03:08:02.684 -07 000000610 INF: FPGA: Xmit ZDACW 28766\n [Z Motor]
17-03-18 03:08:02.684 -07 000000502 INF: FPGA: Recv ZDACW
17-03-18 03:08:02.694 -07 000000610 INF: FPGA: 'ZDACW 28766' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:02.694 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:02.694 -07 000000424 INF: FPGA: Recv ZDACR 28766
17-03-18 03:08:02.704 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.704 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:02.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.854 -07 000000561 INF: FPGA: Recv ZSGSRD 29791
17-03-18 03:08:02.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:02.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.864 -07 000000629 INF: FPGA: Recv ZSGSRD 29788
17-03-18 03:08:02.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.874 -07 000000501 INF: FPGA: Recv ZSGSRD 29791
17-03-18 03:08:02.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.884 -07 000000579 INF: FPGA: Recv ZSGSRD 29784
17-03-18 03:08:02.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.894 -07 000000502 INF: FPGA: Recv ZSGSRD 29788
17-03-18 03:08:02.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.904 -07 000000424 INF: FPGA: Recv ZSGSRD 29791
17-03-18 03:08:02.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.914 -07 000000590 INF: FPGA: Recv ZSGSRD 29785
17-03-18 03:08:02.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.924 -07 000000461 INF: FPGA: Recv ZSGSRD 29786
17-03-18 03:08:02.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.934 -07 000000430 INF: FPGA: Recv ZSGSRD 29789
17-03-18 03:08:02.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:02.944 -07 000000606 INF: FPGA: Recv ZSGSRD 29793
17-03-18 03:08:02.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.954 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:02.954 -07 000000462 INF: FPGA: Recv ZPIEZORD 25273
17-03-18 03:08:02.964 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:02.964 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.9 V.
17-03-18 03:08:02.964 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29789 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29788 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29784 (-130.9 uncal um), Max = 29793 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:08:02.964 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29789, posNoise = 4, negNoise = 5
17-03-18 03:08:02.964 -07 000000610 INF: Z Motor: After move to -0.131682, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:02.964 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:08:02.964 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:02.964 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:02.964 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:02.964 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:02.964 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:02.964 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:02.964 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:02.964 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:02.964 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:02.964 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:02.964 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:02.964 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:02.964 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:02.964 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:02.964 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:08:02.964 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:02.974 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:08:02.974 -07 000000606 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:02.984 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:08:02.984 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:08:02.984 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28943 150\n [Camera]
17-03-18 03:08:03.184 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-18 03:08:03.584 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 595
17-03-18 03:08:03.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 595
17-03-18 03:08:03.584 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:03.584 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:03.584 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-18 03:08:03.584 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 595
17-03-18 03:08:03.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 595
17-03-18 03:08:03.594 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:03.594 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:03.594 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-18 03:08:03.774 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28943 787
17-03-18 03:08:03.924 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:03.984 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 398 ms.
17-03-18 03:08:03.984 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:08:03.984 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:03.994 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:03.994 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-18 03:08:03.994 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 400 ms.
17-03-18 03:08:03.994 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-18 03:08:03.994 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:03.994 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:04.004 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-18 03:08:04.124 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:04.124 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:04.124 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:04.124 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:04.124 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-18 03:08:04.124 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:04.124 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:04.124 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:04.124 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:04.124 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-18 03:08:04.314 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:04.314 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:04.314 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28943 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-18 03:08:04.314 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132110
17-03-18 03:08:04.314 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13211 mm
17-03-18 03:08:04.314 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:04.324 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 28859, sync = True, waitForSettling = False)
17-03-18 03:08:04.324 -07 000000512 INF: Z Motor: Moving to -0.132108 mm, started at -0.131694 mm, distance = -0.41 um
17-03-18 03:08:04.324 -07 000000512 INF: FPGA: Xmit ZDACW 28859\n [Z Motor]
17-03-18 03:08:04.324 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-18 03:08:04.324 -07 000000579 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-18 03:08:04.324 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:08:04.334 -07 000000512 INF: FPGA: 'ZDACW 28859' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:08:04.334 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:04.334 -07 000000444 INF: FPGA: Recv YRDPOS 129483
17-03-18 03:08:04.344 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:08:04.344 -07 000000579 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:04.344 -07 000000579 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:04.344 -07 000000579 INF: Y Motor: Moving 1342 steps-18
17-03-18 03:08:04.344 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:04.344 -07 000000591 INF: FPGA: Recv ZDACR 28859
17-03-18 03:08:04.354 -07 000000512 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:04.354 -07 000000512 INF: Z Motor: MoveAbsStepped took 27 ms (did NOT wait for settling yet))
17-03-18 03:08:04.354 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:04.504 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:08:04.504 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:08:04.504 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:04.504 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:08:04.504 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:08:04.504 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:04.504 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:04.504 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:08:04.504 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:04.514 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:08:04.724 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:08:04.724 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 388 ms overall
17-03-18 03:08:04.774 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:04.784 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:08:04.784 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-18 03:08:04.784 -07 000000579 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:04.784 -07 000000579 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-18 03:08:04.784 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.161 mm/sec
17-03-18 03:08:05.734 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:05.734 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:08:05.744 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:05.744 -07 000000579 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:05.764 -07 000000579 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:05.764 -07 000000579 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:05.764 -07 000000579 INF: Y Motor: Moved to 64.0571 after 1442 ms (table move)
17-03-18 03:08:05.764 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132108 mm (DAC = 28859)
17-03-18 03:08:05.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.774 -07 000000618 INF: FPGA: Recv ZSGSRD 29855
17-03-18 03:08:05.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:08:05.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.774 -07 000000467 INF: FPGA: Recv ZSGSRD 29849
17-03-18 03:08:05.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:05.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.784 -07 000000606 INF: FPGA: Recv ZSGSRD 29848
17-03-18 03:08:05.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.794 -07 000000502 INF: FPGA: Recv ZSGSRD 29858
17-03-18 03:08:05.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.804 -07 000000569 INF: FPGA: Recv ZSGSRD 29858
17-03-18 03:08:05.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.814 -07 000000501 INF: FPGA: Recv ZSGSRD 29852
17-03-18 03:08:05.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.824 -07 000000430 INF: FPGA: Recv ZSGSRD 29851
17-03-18 03:08:05.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.834 -07 000000576 INF: FPGA: Recv ZSGSRD 29854
17-03-18 03:08:05.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.844 -07 000000424 INF: FPGA: Recv ZSGSRD 29852
17-03-18 03:08:05.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:05.854 -07 000000579 INF: FPGA: Recv ZSGSRD 29856
17-03-18 03:08:05.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.864 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:05.864 -07 000000512 INF: FPGA: Recv ZPIEZORD 25383
17-03-18 03:08:05.874 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.874 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.8 V.
17-03-18 03:08:05.874 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29853 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29853 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29848 (-131.3 uncal um), Max = 29858 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:08:05.874 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29853, posNoise = 5, negNoise = 5
17-03-18 03:08:05.874 -07 000000610 INF: Z Motor: After move to -0.132108, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:05.874 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 102 ms (allowed 150 ms), total time = 1547 ms
17-03-18 03:08:05.874 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:05.924 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-18 03:08:05.924 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:05.924 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.132105357079125. ----------
17-03-18 03:08:05.924 -07 000000610 INF: Cycle	108	Tile	6	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:05.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28683, sync = True, waitForSettling = True)
17-03-18 03:08:05.924 -07 000000610 INF: Z Motor: Moving to -0.131302 mm, started at -0.132105 mm, distance = 0.80 um
17-03-18 03:08:05.924 -07 000000610 INF: FPGA: Xmit ZDACW 28683\n [Z Motor]
17-03-18 03:08:05.924 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:08:05.934 -07 000000610 INF: FPGA: 'ZDACW 28683' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:05.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:05.934 -07 000000561 INF: FPGA: Recv ZDACR 28683
17-03-18 03:08:05.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:05.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:06.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.094 -07 000000629 INF: FPGA: Recv ZSGSRD 29725
17-03-18 03:08:06.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:06.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.104 -07 000000591 INF: FPGA: Recv ZSGSRD 29735
17-03-18 03:08:06.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:06.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.114 -07 000000606 INF: FPGA: Recv ZSGSRD 29731
17-03-18 03:08:06.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:06.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.124 -07 000000461 INF: FPGA: Recv ZSGSRD 29725
17-03-18 03:08:06.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:06.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.134 -07 000000561 INF: FPGA: Recv ZSGSRD 29724
17-03-18 03:08:06.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:06.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.144 -07 000000502 INF: FPGA: Recv ZSGSRD 29729
17-03-18 03:08:06.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:06.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.154 -07 000000569 INF: FPGA: Recv ZSGSRD 29727
17-03-18 03:08:06.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:06.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.174 -07 000000501 INF: FPGA: Recv ZSGSRD 29735
17-03-18 03:08:06.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:06.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.184 -07 000000629 INF: FPGA: Recv ZSGSRD 29728
17-03-18 03:08:06.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:06.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:06.194 -07 000000430 INF: FPGA: Recv ZSGSRD 29731
17-03-18 03:08:06.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:06.204 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:06.204 -07 000000561 INF: FPGA: Recv ZPIEZORD 25234
17-03-18 03:08:06.214 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:06.214 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.9 V.
17-03-18 03:08:06.214 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29729 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29728 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29724 (-130.5 uncal um), Max = 29735 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:08:06.214 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29729, posNoise = 6, negNoise = 5
17-03-18 03:08:06.214 -07 000000610 INF: Z Motor: After move to -0.131302, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:06.214 -07 000000610 INF: Z Motor: MoveAbsStepped took 284 ms)
17-03-18 03:08:06.214 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:06.214 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:06.214 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:06.214 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:06.214 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:06.214 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:06.214 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:06.214 -07 000000579 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:06.214 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:06.214 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:06.214 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:06.214 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:06.224 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:08:06.224 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:06.224 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:08:06.224 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:06.234 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:08:06.234 -07 000000467 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:06.234 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:08:06.234 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:06.234 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28859 150\n [Camera]
17-03-18 03:08:06.434 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:06.544 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:06.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:06.834 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:06.834 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:06.834 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:06.834 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:06.834 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-18 03:08:06.834 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:06.834 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:06.834 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:06.834 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:06.834 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-18 03:08:07.024 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28859 787
17-03-18 03:08:07.104 -07 000000590 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.945808,
17-03-18 03:08:07.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:07.214 -07 000000430 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:08:07.214 -07 000000430 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:08:07.214 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:07.214 -07 000000579 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:08:07.214 -07 000000579 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:08:07.214 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:07.224 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:07.224 -07 000000430 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:08:07.224 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:07.224 -07 000000579 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 03:08:07.374 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:07.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:07.374 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:07.374 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:07.374 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-18 03:08:07.374 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:07.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:07.374 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:07.374 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:07.374 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 03:08:07.564 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:08:07.564 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:07.564 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28859 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-18 03:08:07.564 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:08:07.564 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131308754773546. ------
17-03-18 03:08:07.564 -07 000000629 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:08:07.574 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13791 mm
17-03-18 03:08:07.574 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:07.574 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-18 03:08:07.574 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-18 03:08:07.574 -07 000000461 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:08:07.574 -07 000000629 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-18 03:08:07.574 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:07.574 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30127, sync = True, waitForSettling = False)
17-03-18 03:08:07.574 -07 000000569 INF: Z Motor: Moving to -0.137913 mm, started at -0.131309 mm, distance = -6.60 um
17-03-18 03:08:07.574 -07 000000576 INF: FPGA: Recv YRDPOS 131189
17-03-18 03:08:07.584 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:08:07.584 -07 000000512 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:07.584 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:07.584 -07 000000512 INF: Y Motor: Moving 1337 steps-11
17-03-18 03:08:07.584 -07 000000569 INF: FPGA: Xmit ZDACW 30127\n [Z Motor]
17-03-18 03:08:07.584 -07 000000424 INF: FPGA: Recv ZDACW
17-03-18 03:08:07.594 -07 000000629 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:08:07.594 -07 000000569 INF: FPGA: 'ZDACW 30127' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:08:07.604 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:07.614 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:07.614 -07 000000502 INF: FPGA: Recv ZDACR 30127
17-03-18 03:08:07.624 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:08:07.624 -07 000000569 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-18 03:08:07.754 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 379 ms.
17-03-18 03:08:07.754 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:08:07.754 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:07.754 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:08:07.754 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:08:07.754 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:07.754 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:07.754 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-18 03:08:07.754 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:07.764 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:08:07.794 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:08:07.794 -07 000000629 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-18 03:08:07.974 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 03:08:07.974 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:08:08.024 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:08.024 -07 000000629 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:08:08.034 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:08.034 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:08.034 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:08:08.034 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-18 03:08:08.984 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:08.984 -07 000000467 INF: FPGA: Recv YRDPOS 132872
17-03-18 03:08:08.994 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:08.994 -07 000000512 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:09.014 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:09.024 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:09.024 -07 000000512 INF: Y Motor: Moved to 64.8789 after 1447 ms (table move)
17-03-18 03:08:09.024 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137913 mm (DAC = 30127)
17-03-18 03:08:09.024 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.024 -07 000000579 INF: FPGA: Recv ZSGSRD 30763
17-03-18 03:08:09.034 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:08:09.034 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.034 -07 000000462 INF: FPGA: Recv ZSGSRD 30757
17-03-18 03:08:09.044 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.044 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.044 -07 000000591 INF: FPGA: Recv ZSGSRD 30759
17-03-18 03:08:09.054 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.054 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.054 -07 000000430 INF: FPGA: Recv ZSGSRD 30764
17-03-18 03:08:09.064 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.064 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.064 -07 000000579 INF: FPGA: Recv ZSGSRD 30759
17-03-18 03:08:09.074 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.074 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.074 -07 000000512 INF: FPGA: Recv ZSGSRD 30763
17-03-18 03:08:09.084 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.084 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.084 -07 000000502 INF: FPGA: Recv ZSGSRD 30760
17-03-18 03:08:09.094 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.094 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.094 -07 000000455 INF: FPGA: Recv ZSGSRD 30758
17-03-18 03:08:09.104 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.104 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.104 -07 000000424 INF: FPGA: Recv ZSGSRD 30755
17-03-18 03:08:09.114 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.114 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:09.114 -07 000000576 INF: FPGA: Recv ZSGSRD 30753
17-03-18 03:08:09.124 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.124 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:09.124 -07 000000461 INF: FPGA: Recv ZPIEZORD 26585
17-03-18 03:08:09.134 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.134 -07 000000626 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -9.2 V.
17-03-18 03:08:09.134 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30759 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30759 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30753 (-137.1 uncal um), Max = 30764 (-137.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:08:09.134 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30759, posNoise = 5, negNoise = 6
17-03-18 03:08:09.134 -07 000000626 INF: Z Motor: After move to -0.137913, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:09.134 -07 000000626 INF: Z Motor: Settle wait time = 1449 ms, measure time = 107 ms (allowed 150 ms), total time = 1556 ms
17-03-18 03:08:09.134 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:09.184 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-18 03:08:09.184 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:09.184 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:09.184 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:09.184 -07 000000579 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:09.184 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:08:09.184 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:09.184 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:09.194 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-18 03:08:09.194 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:08:09.194 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-18 03:08:09.194 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:08:09.204 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-18 03:08:09.204 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-18 03:08:09.204 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:08:09.254 -07 000000606 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:08:09.554 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:08:09.554 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:08:09.554 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:08:09.554 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 589594896, 0x0, 559484976) start.
17-03-18 03:08:09.584 -07 000000444 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:08:09.594 -07 000000579 INF: FPGA: Recv CAMSNAP
17-03-18 03:08:09.594 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall
17-03-18 03:08:09.674 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 589594896, 0x0, 559484976) end. Duration was 120 ms.
17-03-18 03:08:09.674 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:09.674 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:08:09.674 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-18 03:08:09.694 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:08:09.694 -07 000000626 INF: Autofocus start
17-03-18 03:08:09.694 -07 000000626 INF: MeasureProfile start
17-03-18 03:08:09.694 -07 000000430 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:08:09.704 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:09.704 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:08:09.704 -07 000000626 INF: MeasureProfile done
17-03-18 03:08:09.704 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:08:09.714 -07 000000626 INF: Autofocus finished
17-03-18 03:08:09.904 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:08:09.904 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:08:09.904 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.13792569327956. ----------
17-03-18 03:08:09.904 -07 000000610 INF: Cycle	108	Tile	7	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:09.914 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28651, sync = True, waitForSettling = True)
17-03-18 03:08:09.914 -07 000000610 INF: Z Motor: Moving to -0.131156 mm, started at -0.137926 mm, distance = 6.77 um
17-03-18 03:08:09.914 -07 000000610 INF: FPGA: Xmit ZDACW 28651\n [Z Motor]
17-03-18 03:08:09.914 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 03:08:09.924 -07 000000610 INF: FPGA: 'ZDACW 28651' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:08:09.924 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:09.924 -07 000000462 INF: FPGA: Recv ZDACR 28651
17-03-18 03:08:09.934 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:09.934 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:10.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.084 -07 000000444 INF: FPGA: Recv ZSGSRD 29708
17-03-18 03:08:10.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.094 -07 000000618 INF: FPGA: Recv ZSGSRD 29709
17-03-18 03:08:10.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.104 -07 000000569 INF: FPGA: Recv ZSGSRD 29707
17-03-18 03:08:10.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.114 -07 000000629 INF: FPGA: Recv ZSGSRD 29698
17-03-18 03:08:10.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.124 -07 000000579 INF: FPGA: Recv ZSGSRD 29707
17-03-18 03:08:10.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.134 -07 000000501 INF: FPGA: Recv ZSGSRD 29704
17-03-18 03:08:10.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.144 -07 000000590 INF: FPGA: Recv ZSGSRD 29706
17-03-18 03:08:10.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.154 -07 000000467 INF: FPGA: Recv ZSGSRD 29711
17-03-18 03:08:10.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.164 -07 000000629 INF: FPGA: Recv ZSGSRD 29707
17-03-18 03:08:10.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:10.174 -07 000000579 INF: FPGA: Recv ZSGSRD 29704
17-03-18 03:08:10.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.184 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:10.184 -07 000000501 INF: FPGA: Recv ZPIEZORD 25191
17-03-18 03:08:10.194 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:10.194 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.9 V.
17-03-18 03:08:10.194 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29706 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29707 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29698 (-130.3 uncal um), Max = 29711 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:08:10.194 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29706, posNoise = 5, negNoise = 8
17-03-18 03:08:10.194 -07 000000610 INF: Z Motor: After move to -0.131156, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:10.194 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-18 03:08:10.194 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:10.194 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:10.194 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:10.194 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:10.194 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:10.194 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:10.194 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:10.194 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:10.194 -07 000000579 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:10.194 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:10.194 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:10.194 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:10.204 -07 000000579 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:08:10.204 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:10.204 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:10.204 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:10.214 -07 000000579 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:08:10.214 -07 000000579 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:08:10.214 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:08:10.214 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:10.214 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28828 150\n [Camera]
17-03-18 03:08:10.414 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:10.814 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:10.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:10.824 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:10.824 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:10.824 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-18 03:08:10.824 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:10.824 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:10.824 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:10.824 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:10.824 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-18 03:08:11.004 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28828 787
17-03-18 03:08:11.154 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:11.194 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 376 ms.
17-03-18 03:08:11.194 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 03:08:11.194 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:11.194 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:08:11.194 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:08:11.194 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:11.204 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:11.204 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:08:11.344 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 147 ms.
17-03-18 03:08:11.354 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:11.354 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:11.354 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:11.354 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:11.354 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:11.354 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 534 ms.
17-03-18 03:08:11.354 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:11.364 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:11.364 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:08:11.364 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:11.364 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:08:11.544 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:11.544 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:11.544 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28828 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-18 03:08:11.544 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131793
17-03-18 03:08:11.544 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13179 mm
17-03-18 03:08:11.544 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:11.544 -07 000000461 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:11.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:11.544 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-18 03:08:11.544 -07 000000502 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-18 03:08:11.544 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:11.544 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28790, sync = True, waitForSettling = False)
17-03-18 03:08:11.554 -07 000000618 INF: Z Motor: Moving to -0.131792 mm, started at -0.131161 mm, distance = -0.63 um
17-03-18 03:08:11.554 -07 000000618 INF: FPGA: Xmit ZDACW 28790\n [Z Motor]
17-03-18 03:08:11.554 -07 000000569 INF: FPGA: Recv YRDPOS 132873
17-03-18 03:08:11.554 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 03:08:11.554 -07 000000502 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:11.554 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:08:11.554 -07 000000502 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:11.554 -07 000000502 INF: Y Motor: Moving 1349 steps-28
17-03-18 03:08:11.564 -07 000000618 INF: FPGA: 'ZDACW 28790' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:11.564 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:11.574 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:11.574 -07 000000576 INF: FPGA: Recv ZDACR 28790
17-03-18 03:08:11.584 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:11.584 -07 000000618 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 03:08:11.744 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:08:11.744 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:08:11.744 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:11.744 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:08:11.744 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:08:11.744 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:11.744 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:11.754 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:11.754 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-18 03:08:11.754 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:08:11.934 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 03:08:11.934 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-18 03:08:11.984 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:11.984 -07 000000576 INF: FPGA: Recv YRDPOS 134582
17-03-18 03:08:11.994 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:11.994 -07 000000502 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:11.994 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-18 03:08:11.994 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-18 03:08:12.464 -07 000000591 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 3.977204,
17-03-18 03:08:12.944 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:12.944 -07 000000561 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:08:12.954 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:12.954 -07 000000502 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:12.984 -07 000000502 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:12.984 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:08:12.984 -07 000000502 INF: Y Motor: Moved to 65.7144 after 1431 ms (table move)
17-03-18 03:08:12.984 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131792 mm (DAC = 28790)
17-03-18 03:08:12.984 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:12.984 -07 000000461 INF: FPGA: Recv ZSGSRD 29804
17-03-18 03:08:12.994 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:08:12.994 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:12.994 -07 000000576 INF: FPGA: Recv ZSGSRD 29810
17-03-18 03:08:13.004 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.004 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.004 -07 000000591 INF: FPGA: Recv ZSGSRD 29809
17-03-18 03:08:13.014 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.014 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.014 -07 000000561 INF: FPGA: Recv ZSGSRD 29809
17-03-18 03:08:13.024 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.024 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.024 -07 000000569 INF: FPGA: Recv ZSGSRD 29801
17-03-18 03:08:13.034 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.034 -07 000000424 INF: FPGA: Recv ZSGSRD 29803
17-03-18 03:08:13.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.044 -07 000000579 INF: FPGA: Recv ZSGSRD 29802
17-03-18 03:08:13.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.054 -07 000000512 INF: FPGA: Recv ZSGSRD 29804
17-03-18 03:08:13.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.064 -07 000000590 INF: FPGA: Recv ZSGSRD 29802
17-03-18 03:08:13.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.074 -07 000000467 INF: FPGA: Recv ZSGSRD 29803
17-03-18 03:08:13.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.084 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:13.084 -07 000000462 INF: FPGA: Recv ZPIEZORD 25342
17-03-18 03:08:13.094 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.094 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.8 V.
17-03-18 03:08:13.094 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29805 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29804 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29801 (-131.0 uncal um), Max = 29810 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:08:13.094 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29805, posNoise = 5, negNoise = 4
17-03-18 03:08:13.094 -07 000000610 INF: Z Motor: After move to -0.131792, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:13.094 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 107 ms (allowed 150 ms), total time = 1540 ms
17-03-18 03:08:13.094 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:13.144 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-18 03:08:13.144 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:13.144 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.13179699489632. ----------
17-03-18 03:08:13.144 -07 000000610 INF: Cycle	108	Tile	8	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:13.144 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28613, sync = True, waitForSettling = True)
17-03-18 03:08:13.144 -07 000000610 INF: Z Motor: Moving to -0.130982 mm, started at -0.131797 mm, distance = 0.82 um
17-03-18 03:08:13.144 -07 000000610 INF: FPGA: Xmit ZDACW 28613\n [Z Motor]
17-03-18 03:08:13.144 -07 000000618 INF: FPGA: Recv ZDACW
17-03-18 03:08:13.154 -07 000000610 INF: FPGA: 'ZDACW 28613' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:13.154 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:13.154 -07 000000591 INF: FPGA: Recv ZDACR 28613
17-03-18 03:08:13.164 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.164 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:13.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.314 -07 000000501 INF: FPGA: Recv ZSGSRD 29676
17-03-18 03:08:13.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:13.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.324 -07 000000455 INF: FPGA: Recv ZSGSRD 29684
17-03-18 03:08:13.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.334 -07 000000461 INF: FPGA: Recv ZSGSRD 29683
17-03-18 03:08:13.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.344 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.344 -07 000000576 INF: FPGA: Recv ZSGSRD 29671
17-03-18 03:08:13.354 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.354 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.354 -07 000000512 INF: FPGA: Recv ZSGSRD 29677
17-03-18 03:08:13.364 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.364 -07 000000561 INF: FPGA: Recv ZSGSRD 29681
17-03-18 03:08:13.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.374 -07 000000626 INF: FPGA: Recv ZSGSRD 29679
17-03-18 03:08:13.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.384 -07 000000430 INF: FPGA: Recv ZSGSRD 29677
17-03-18 03:08:13.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.394 -07 000000579 INF: FPGA: Recv ZSGSRD 29673
17-03-18 03:08:13.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:13.404 -07 000000462 INF: FPGA: Recv ZSGSRD 29684
17-03-18 03:08:13.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.414 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:13.414 -07 000000467 INF: FPGA: Recv ZPIEZORD 25186
17-03-18 03:08:13.424 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:13.424 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.9 V.
17-03-18 03:08:13.424 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29678 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29678 (-130.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29671 (-130.2 uncal um), Max = 29684 (-130.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:08:13.424 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29678, posNoise = 6, negNoise = 7
17-03-18 03:08:13.424 -07 000000610 INF: Z Motor: After move to -0.130982, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:13.424 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:08:13.424 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:13.424 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:13.424 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:13.424 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:13.424 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:13.424 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:13.424 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:13.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:13.424 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:13.424 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:13.424 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:13.424 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:13.434 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:08:13.434 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:13.434 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:08:13.434 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:13.444 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:08:13.444 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:13.444 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:08:13.444 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:13.444 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28790 150\n [Camera]
17-03-18 03:08:13.644 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:14.044 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:14.044 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:14.044 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:14.044 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:14.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:14.044 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:14.054 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:14.054 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:08:14.054 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:14.054 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-18 03:08:14.234 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28790 787
17-03-18 03:08:14.384 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 939
17-03-18 03:08:14.424 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 03:08:14.424 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 03:08:14.424 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:14.424 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:14.424 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:08:14.424 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:08:14.424 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:08:14.424 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:14.434 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:14.434 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-18 03:08:14.584 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:14.584 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:14.584 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:14.694 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:14.694 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:14.704 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:14.704 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:14.704 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:08:14.704 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:14.704 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:08:14.774 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:08:14.774 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:14.774 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28790 150' command took 2 ms to send, 1322 ms to get response, and 1329 ms overall
17-03-18 03:08:14.774 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.131319
17-03-18 03:08:14.774 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13132 mm
17-03-18 03:08:14.774 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:14.774 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-18 03:08:14.774 -07 000000561 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-18 03:08:14.774 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:14.774 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 28687, sync = True, waitForSettling = False)
17-03-18 03:08:14.774 -07 000000591 INF: Z Motor: Moving to -0.131321 mm, started at -0.130981 mm, distance = -0.34 um
17-03-18 03:08:14.784 -07 000000591 INF: FPGA: Xmit ZDACW 28687\n [Z Motor]
17-03-18 03:08:14.784 -07 000000501 INF: FPGA: Recv YRDPOS 134583
17-03-18 03:08:14.784 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-18 03:08:14.784 -07 000000561 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:14.784 -07 000000561 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:14.784 -07 000000561 INF: Y Motor: Moving 1341 steps-18
17-03-18 03:08:14.784 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 03:08:14.794 -07 000000591 INF: FPGA: 'ZDACW 28687' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-18 03:08:14.794 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:14.794 -07 000000467 INF: FPGA: Recv ZDACR 28687
17-03-18 03:08:14.804 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:14.804 -07 000000591 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-18 03:08:14.804 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:15.084 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-18 03:08:15.084 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:08:15.084 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:15.084 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:08:15.084 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:08:15.084 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:15.094 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:15.094 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-18 03:08:15.094 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:15.094 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-18 03:08:15.174 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 03:08:15.174 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:08:15.224 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:15.224 -07 000000461 INF: FPGA: Recv YRDPOS 136272
17-03-18 03:08:15.234 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:15.234 -07 000000561 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:15.234 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:08:15.234 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-18 03:08:16.184 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:16.184 -07 000000444 INF: FPGA: Recv YRDPOS 136273
17-03-18 03:08:16.194 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:16.194 -07 000000561 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:16.224 -07 000000561 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:16.224 -07 000000561 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:08:16.224 -07 000000561 INF: Y Motor: Moved to 66.5396 after 1442 ms (table move)
17-03-18 03:08:16.224 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131321 mm (DAC = 28687)
17-03-18 03:08:16.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.224 -07 000000501 INF: FPGA: Recv ZSGSRD 29733
17-03-18 03:08:16.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:08:16.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.234 -07 000000579 INF: FPGA: Recv ZSGSRD 29741
17-03-18 03:08:16.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.244 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.244 -07 000000512 INF: FPGA: Recv ZSGSRD 29735
17-03-18 03:08:16.254 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.254 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.254 -07 000000424 INF: FPGA: Recv ZSGSRD 29730
17-03-18 03:08:16.264 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.264 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.264 -07 000000467 INF: FPGA: Recv ZSGSRD 29731
17-03-18 03:08:16.274 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.274 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.274 -07 000000462 INF: FPGA: Recv ZSGSRD 29733
17-03-18 03:08:16.284 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.284 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.284 -07 000000629 INF: FPGA: Recv ZSGSRD 29729
17-03-18 03:08:16.294 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.294 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.294 -07 000000591 INF: FPGA: Recv ZSGSRD 29723
17-03-18 03:08:16.304 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.304 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.304 -07 000000618 INF: FPGA: Recv ZSGSRD 29730
17-03-18 03:08:16.314 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.314 -07 000000455 INF: FPGA: Recv ZSGSRD 29739
17-03-18 03:08:16.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.324 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:16.324 -07 000000462 INF: FPGA: Recv ZPIEZORD 25246
17-03-18 03:08:16.334 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.334 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.377 V. Piezo Error = -9.8 V.
17-03-18 03:08:16.334 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29732 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29732 (-130.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29723 (-130.5 uncal um), Max = 29741 (-130.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:08:16.334 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29732, posNoise = 9, negNoise = 9
17-03-18 03:08:16.334 -07 000000610 INF: Z Motor: After move to -0.131321, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:16.334 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 113 ms (allowed 150 ms), total time = 1558 ms
17-03-18 03:08:16.334 -07 000000610 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:16.374 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-18 03:08:16.374 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:16.374 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.131328027409972. ----------
17-03-18 03:08:16.374 -07 000000610 INF: Cycle	108	Tile	9	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:16.374 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28510, sync = True, waitForSettling = True)
17-03-18 03:08:16.374 -07 000000610 INF: Z Motor: Moving to -0.130510 mm, started at -0.131328 mm, distance = 0.82 um
17-03-18 03:08:16.374 -07 000000610 INF: FPGA: Xmit ZDACW 28510\n [Z Motor]
17-03-18 03:08:16.374 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:08:16.384 -07 000000610 INF: FPGA: 'ZDACW 28510' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:16.384 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:16.384 -07 000000430 INF: FPGA: Recv ZDACR 28510
17-03-18 03:08:16.394 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.394 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:16.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.544 -07 000000618 INF: FPGA: Recv ZSGSRD 29604
17-03-18 03:08:16.544 -07 000000579 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:16.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:16.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:16.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.554 -07 000000591 INF: FPGA: Recv ZSGSRD 29611
17-03-18 03:08:16.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.564 -07 000000461 INF: FPGA: Recv ZSGSRD 29613
17-03-18 03:08:16.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:16.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.574 -07 000000618 INF: FPGA: Recv ZSGSRD 29609
17-03-18 03:08:16.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.584 -07 000000629 INF: FPGA: Recv ZSGSRD 29605
17-03-18 03:08:16.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.594 -07 000000606 INF: FPGA: Recv ZSGSRD 29604
17-03-18 03:08:16.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.604 -07 000000561 INF: FPGA: Recv ZSGSRD 29603
17-03-18 03:08:16.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.614 -07 000000455 INF: FPGA: Recv ZSGSRD 29604
17-03-18 03:08:16.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.624 -07 000000424 INF: FPGA: Recv ZSGSRD 29608
17-03-18 03:08:16.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:16.634 -07 000000576 INF: FPGA: Recv ZSGSRD 29611
17-03-18 03:08:16.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.644 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:16.644 -07 000000626 INF: FPGA: Recv ZPIEZORD 25085
17-03-18 03:08:16.654 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:16.654 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.9 V.
17-03-18 03:08:16.654 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29607 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29606 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29603 (-129.7 uncal um), Max = 29613 (-129.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:08:16.654 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29607, posNoise = 6, negNoise = 4
17-03-18 03:08:16.654 -07 000000610 INF: Z Motor: After move to -0.130510, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:16.654 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:08:16.654 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:16.654 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:16.654 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:16.654 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:16.654 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:16.654 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:16.654 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:16.654 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:16.654 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:08:16.654 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:16.654 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:16.654 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:16.664 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:08:16.664 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:16.664 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:08:16.664 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:16.674 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:08:16.674 -07 000000629 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:08:16.674 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:08:16.674 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:08:16.674 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28687 150\n [Camera]
17-03-18 03:08:16.874 -07 000000606 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:17.274 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:17.274 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:17.274 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:17.274 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:17.284 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:17.284 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:17.284 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:17.284 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:08:17.284 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:17.284 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:08:17.464 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28687 787
17-03-18 03:08:17.624 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:17.654 -07 000000591 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 03:08:17.654 -07 000000591 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 03:08:17.654 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:17.654 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-18 03:08:17.654 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-18 03:08:17.654 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:17.654 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:17.654 -07 000000591 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-18 03:08:17.664 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:17.664 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:08:17.814 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:17.814 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:17.814 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:17.814 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:17.814 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:08:17.814 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:17.814 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:17.814 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:17.814 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:17.814 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:08:17.824 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.003063,
17-03-18 03:08:18.004 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:18.004 -07 000000579 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:18.004 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28687 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-18 03:08:18.004 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131432
17-03-18 03:08:18.004 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13143 mm
17-03-18 03:08:18.004 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:18.004 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-18 03:08:18.004 -07 000000561 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-18 03:08:18.004 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 28711, sync = True, waitForSettling = False)
17-03-18 03:08:18.004 -07 000000455 INF: Z Motor: Moving to -0.131431 mm, started at -0.130525 mm, distance = -0.91 um
17-03-18 03:08:18.004 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:18.014 -07 000000462 INF: FPGA: Recv YRDPOS 136273
17-03-18 03:08:18.024 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:18.024 -07 000000561 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:18.024 -07 000000561 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:18.024 -07 000000561 INF: Y Motor: Moving 1349 steps-28
17-03-18 03:08:18.024 -07 000000455 INF: FPGA: Xmit ZDACW 28711\n [Z Motor]
17-03-18 03:08:18.024 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 03:08:18.034 -07 000000455 INF: FPGA: 'ZDACW 28711' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-18 03:08:18.034 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:18.034 -07 000000502 INF: FPGA: Recv ZDACR 28711
17-03-18 03:08:18.044 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:18.044 -07 000000455 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:18.044 -07 000000455 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 03:08:18.204 -07 000000606 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 387 ms.
17-03-18 03:08:18.204 -07 000000606 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:08:18.204 -07 000000606 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:18.204 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 385 ms.
17-03-18 03:08:18.204 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-18 03:08:18.204 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:18.204 -07 000000606 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:18.204 -07 000000606 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:08:18.204 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:18.214 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-18 03:08:18.424 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-18 03:08:18.424 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-18 03:08:18.464 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:18.474 -07 000000576 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:08:18.474 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:08:18.474 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:18.474 -07 000000561 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-18 03:08:18.474 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.843 mm, average velocity = 2.102 mm/sec
17-03-18 03:08:19.424 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:19.424 -07 000000444 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:08:19.434 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.434 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:19.454 -07 000000561 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:19.454 -07 000000561 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:19.454 -07 000000561 INF: Y Motor: Moved to 67.3721 after 1450 ms (table move)
17-03-18 03:08:19.464 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131431 mm (DAC = 28711)
17-03-18 03:08:19.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.464 -07 000000430 INF: FPGA: Recv ZSGSRD 29748
17-03-18 03:08:19.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:08:19.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.474 -07 000000501 INF: FPGA: Recv ZSGSRD 29752
17-03-18 03:08:19.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.484 -07 000000467 INF: FPGA: Recv ZSGSRD 29752
17-03-18 03:08:19.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.494 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.494 -07 000000569 INF: FPGA: Recv ZSGSRD 29750
17-03-18 03:08:19.504 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.504 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.504 -07 000000618 INF: FPGA: Recv ZSGSRD 29749
17-03-18 03:08:19.514 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.514 -07 000000424 INF: FPGA: Recv ZSGSRD 29750
17-03-18 03:08:19.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.524 -07 000000576 INF: FPGA: Recv ZSGSRD 29745
17-03-18 03:08:19.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.534 -07 000000502 INF: FPGA: Recv ZSGSRD 29744
17-03-18 03:08:19.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.544 -07 000000424 INF: FPGA: Recv ZSGSRD 29752
17-03-18 03:08:19.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.554 -07 000000430 INF: FPGA: Recv ZSGSRD 29752
17-03-18 03:08:19.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.564 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:19.564 -07 000000618 INF: FPGA: Recv ZPIEZORD 25298
17-03-18 03:08:19.574 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.574 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.8 V.
17-03-18 03:08:19.574 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29749 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29750 (-130.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29744 (-130.6 uncal um), Max = 29752 (-130.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:08:19.574 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29749, posNoise = 3, negNoise = 5
17-03-18 03:08:19.574 -07 000000610 INF: Z Motor: After move to -0.131431, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:19.574 -07 000000610 INF: Z Motor: Settle wait time = 1452 ms, measure time = 108 ms (allowed 150 ms), total time = 1560 ms
17-03-18 03:08:19.574 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:19.624 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 03:08:19.624 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:19.624 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.131437239016382. ----------
17-03-18 03:08:19.624 -07 000000610 INF: Cycle	108	Tile	10	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:19.624 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28535, sync = True, waitForSettling = True)
17-03-18 03:08:19.624 -07 000000610 INF: Z Motor: Moving to -0.130625 mm, started at -0.131437 mm, distance = 0.81 um
17-03-18 03:08:19.624 -07 000000610 INF: FPGA: Xmit ZDACW 28535\n [Z Motor]
17-03-18 03:08:19.624 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:08:19.634 -07 000000610 INF: FPGA: 'ZDACW 28535' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:19.634 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:19.634 -07 000000467 INF: FPGA: Recv ZDACR 28535
17-03-18 03:08:19.644 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.644 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:19.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.794 -07 000000462 INF: FPGA: Recv ZSGSRD 29625
17-03-18 03:08:19.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:19.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.804 -07 000000461 INF: FPGA: Recv ZSGSRD 29629
17-03-18 03:08:19.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.814 -07 000000424 INF: FPGA: Recv ZSGSRD 29622
17-03-18 03:08:19.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.824 -07 000000455 INF: FPGA: Recv ZSGSRD 29622
17-03-18 03:08:19.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.834 -07 000000618 INF: FPGA: Recv ZSGSRD 29624
17-03-18 03:08:19.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.844 -07 000000626 INF: FPGA: Recv ZSGSRD 29623
17-03-18 03:08:19.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.854 -07 000000501 INF: FPGA: Recv ZSGSRD 29622
17-03-18 03:08:19.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.864 -07 000000502 INF: FPGA: Recv ZSGSRD 29620
17-03-18 03:08:19.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:19.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.874 -07 000000591 INF: FPGA: Recv ZSGSRD 29623
17-03-18 03:08:19.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:19.884 -07 000000576 INF: FPGA: Recv ZSGSRD 29630
17-03-18 03:08:19.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.894 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:19.894 -07 000000579 INF: FPGA: Recv ZPIEZORD 25116
17-03-18 03:08:19.904 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:19.904 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.9 V.
17-03-18 03:08:19.904 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29624 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29623 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29620 (-129.8 uncal um), Max = 29630 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:08:19.904 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29624, posNoise = 6, negNoise = 4
17-03-18 03:08:19.904 -07 000000610 INF: Z Motor: After move to -0.130625, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:19.904 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:08:19.904 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:19.904 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:19.904 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:19.904 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:19.904 -07 000000590 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:19.904 -07 000000444 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:19.904 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:19.904 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:19.904 -07 000000606 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:19.904 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:19.904 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:19.904 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:19.914 -07 000000606 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-18 03:08:19.914 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:19.914 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:08:19.914 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:19.914 -07 000000606 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:08:19.914 -07 000000606 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:19.924 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:08:19.924 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:08:19.924 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28711 150\n [Camera]
17-03-18 03:08:20.124 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-18 03:08:20.524 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:20.524 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:20.524 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:20.524 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:20.524 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:20.524 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:20.534 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:20.534 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:08:20.534 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:20.534 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:08:20.714 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28711 787
17-03-18 03:08:20.864 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:20.904 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 03:08:20.904 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:08:20.904 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:20.914 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:20.914 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-18 03:08:20.914 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:08:20.914 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:20.914 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:08:20.914 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:20.914 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-18 03:08:21.064 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:21.064 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:21.064 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:21.064 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:21.064 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:21.064 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:21.064 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:21.064 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:08:21.064 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:21.064 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-18 03:08:21.254 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:21.254 -07 000000430 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:21.254 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28711 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-18 03:08:21.254 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:08:21.254 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130634212498662. ------
17-03-18 03:08:21.254 -07 000000591 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13690 mm
17-03-18 03:08:21.254 -07 000000591 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:21.264 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:08:21.264 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29907, sync = True, waitForSettling = False)
17-03-18 03:08:21.264 -07 000000501 INF: Z Motor: Moving to -0.136905 mm, started at -0.130634 mm, distance = -6.27 um
17-03-18 03:08:21.264 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-18 03:08:21.264 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-18 03:08:21.264 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:08:21.274 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:21.274 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:21.274 -07 000000467 INF: FPGA: Recv YRDPOS 137978
17-03-18 03:08:21.284 -07 000000501 INF: FPGA: Xmit ZDACW 29907\n [Z Motor]
17-03-18 03:08:21.284 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-18 03:08:21.284 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:21.284 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:21.284 -07 000000576 INF: Y Motor: Moving 1345 steps-22
17-03-18 03:08:21.284 -07 000000606 INF: FPGA: Recv ZDACW
17-03-18 03:08:21.294 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:08:21.294 -07 000000501 INF: FPGA: 'ZDACW 29907' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-18 03:08:21.304 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:21.314 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:21.314 -07 000000618 INF: FPGA: Recv ZDACR 29907
17-03-18 03:08:21.324 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:08:21.324 -07 000000501 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-18 03:08:21.444 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-18 03:08:21.444 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-18 03:08:21.444 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:21.444 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:08:21.444 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:08:21.444 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:21.454 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:08:21.454 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:21.454 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:08:21.454 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:08:21.494 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:08:21.494 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:08:21.544 -07 000000455 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:21.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:21.674 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-18 03:08:21.674 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:08:21.724 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:21.734 -07 000000501 INF: FPGA: Recv YRDPOS 139685
17-03-18 03:08:21.734 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:21.734 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:21.734 -07 000000576 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-18 03:08:21.734 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec
17-03-18 03:08:22.684 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:22.684 -07 000000629 INF: FPGA: Recv YRDPOS 139685
17-03-18 03:08:22.694 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:22.694 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:22.714 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:22.714 -07 000000576 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:22.714 -07 000000576 INF: Y Motor: Moved to 68.2056 after 1456 ms (table move)
17-03-18 03:08:22.724 -07 000000591 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136905 mm (DAC = 29907)
17-03-18 03:08:22.724 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.724 -07 000000590 INF: FPGA: Recv ZSGSRD 30604
17-03-18 03:08:22.734 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:08:22.734 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.734 -07 000000502 INF: FPGA: Recv ZSGSRD 30601
17-03-18 03:08:22.744 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.744 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.744 -07 000000512 INF: FPGA: Recv ZSGSRD 30609
17-03-18 03:08:22.754 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.754 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.754 -07 000000424 INF: FPGA: Recv ZSGSRD 30604
17-03-18 03:08:22.764 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.764 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.764 -07 000000626 INF: FPGA: Recv ZSGSRD 30599
17-03-18 03:08:22.774 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.774 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.774 -07 000000455 INF: FPGA: Recv ZSGSRD 30601
17-03-18 03:08:22.784 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.784 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.784 -07 000000629 INF: FPGA: Recv ZSGSRD 30599
17-03-18 03:08:22.794 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.794 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.794 -07 000000576 INF: FPGA: Recv ZSGSRD 30599
17-03-18 03:08:22.804 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.804 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.804 -07 000000424 INF: FPGA: Recv ZSGSRD 30595
17-03-18 03:08:22.814 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.814 -07 000000591 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:22.814 -07 000000430 INF: FPGA: Recv ZSGSRD 30600
17-03-18 03:08:22.824 -07 000000591 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.824 -07 000000591 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:22.824 -07 000000455 INF: FPGA: Recv ZPIEZORD 26385
17-03-18 03:08:22.834 -07 000000591 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:22.834 -07 000000591 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.3 V.
17-03-18 03:08:22.834 -07 000000591 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30601 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30600 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30595 (-136.1 uncal um), Max = 30609 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:08:22.834 -07 000000591 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30601, posNoise = 8, negNoise = 6
17-03-18 03:08:22.834 -07 000000591 INF: Z Motor: After move to -0.136905, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:22.834 -07 000000591 INF: Z Motor: Settle wait time = 1460 ms, measure time = 107 ms (allowed 150 ms), total time = 1567 ms
17-03-18 03:08:22.834 -07 000000591 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:22.884 -07 000000591 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-18 03:08:22.884 -07 000000591 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:22.884 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:22.884 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:22.884 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:22.884 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:22.884 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:08:22.884 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:22.894 -07 000000444 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:22.894 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:08:22.894 -07 000000444 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:22.894 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:08:22.894 -07 000000444 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:08:22.894 -07 000000444 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:08:22.904 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:08:22.944 -07 000000467 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:08:23.184 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.009895,
17-03-18 03:08:23.244 -07 000000590 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:08:23.244 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:08:23.244 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:08:23.244 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) start.
17-03-18 03:08:23.284 -07 000000591 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:08:23.284 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 03:08:23.284 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall
17-03-18 03:08:23.364 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) end. Duration was 114 ms.
17-03-18 03:08:23.364 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:23.364 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:08:23.364 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-18 03:08:23.384 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:08:23.384 -07 000000462 INF: Autofocus start
17-03-18 03:08:23.384 -07 000000462 INF: MeasureProfile start
17-03-18 03:08:23.494 -07 000000455 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:08:23.494 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-18 03:08:23.504 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:08:23.514 -07 000000462 INF: MeasureProfile done
17-03-18 03:08:23.514 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-18 03:08:23.514 -07 000000462 INF: Autofocus finished
17-03-18 03:08:23.704 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:08:23.704 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:08:23.704 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136910667761162. ----------
17-03-18 03:08:23.704 -07 000000610 INF: Cycle	108	Tile	11	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:23.714 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28431, sync = True, waitForSettling = True)
17-03-18 03:08:23.714 -07 000000610 INF: Z Motor: Moving to -0.130149 mm, started at -0.136911 mm, distance = 6.76 um
17-03-18 03:08:23.714 -07 000000610 INF: FPGA: Xmit ZDACW 28431\n [Z Motor]
17-03-18 03:08:23.714 -07 000000430 INF: FPGA: Recv ZDACW
17-03-18 03:08:23.724 -07 000000610 INF: FPGA: 'ZDACW 28431' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:08:23.724 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:23.724 -07 000000561 INF: FPGA: Recv ZDACR 28431
17-03-18 03:08:23.734 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.734 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:23.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.884 -07 000000606 INF: FPGA: Recv ZSGSRD 29550
17-03-18 03:08:23.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:23.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.894 -07 000000626 INF: FPGA: Recv ZSGSRD 29551
17-03-18 03:08:23.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.904 -07 000000569 INF: FPGA: Recv ZSGSRD 29543
17-03-18 03:08:23.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.914 -07 000000462 INF: FPGA: Recv ZSGSRD 29554
17-03-18 03:08:23.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.924 -07 000000461 INF: FPGA: Recv ZSGSRD 29549
17-03-18 03:08:23.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.934 -07 000000606 INF: FPGA: Recv ZSGSRD 29547
17-03-18 03:08:23.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.944 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.944 -07 000000467 INF: FPGA: Recv ZSGSRD 29552
17-03-18 03:08:23.954 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.954 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.954 -07 000000455 INF: FPGA: Recv ZSGSRD 29549
17-03-18 03:08:23.964 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.964 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.964 -07 000000576 INF: FPGA: Recv ZSGSRD 29555
17-03-18 03:08:23.974 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.974 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:23.974 -07 000000561 INF: FPGA: Recv ZSGSRD 29550
17-03-18 03:08:23.984 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.984 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:23.984 -07 000000579 INF: FPGA: Recv ZPIEZORD 24998
17-03-18 03:08:23.994 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:23.994 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -10.0 V.
17-03-18 03:08:23.994 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29550 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29550 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29543 (-129.3 uncal um), Max = 29555 (-129.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:08:23.994 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29550, posNoise = 5, negNoise = 7
17-03-18 03:08:23.994 -07 000000610 INF: Z Motor: After move to -0.130149, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:23.994 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:08:23.994 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:23.994 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:23.994 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:23.994 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:23.994 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:23.994 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:23.994 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:23.994 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:23.994 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:08:23.994 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:23.994 -07 000000455 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:23.994 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:24.004 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:08:24.004 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:24.004 -07 000000455 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:08:24.004 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:24.014 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:08:24.014 -07 000000461 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:08:24.014 -07 000000455 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:08:24.014 -07 000000455 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-18 03:08:24.014 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28607 150\n [Camera]
17-03-18 03:08:24.214 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:24.614 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:24.614 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:24.614 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:24.614 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:24.614 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:24.624 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:24.624 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:24.624 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:08:24.624 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:24.624 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:08:24.804 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28607 787
17-03-18 03:08:24.954 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:24.994 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:08:24.994 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:08:24.994 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:25.004 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:08:25.004 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:08:25.004 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:25.004 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:25.004 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:25.004 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:08:25.014 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:08:25.154 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:25.154 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:25.154 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:25.154 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:25.154 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:25.154 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:25.154 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:25.154 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:08:25.154 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:25.154 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 03:08:25.344 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:25.344 -07 000000590 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:25.344 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28607 150' command took 2 ms to send, 1324 ms to get response, and 1329 ms overall
17-03-18 03:08:25.344 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130866
17-03-18 03:08:25.344 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13087 mm
17-03-18 03:08:25.344 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:25.344 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-18 03:08:25.344 -07 000000569 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-18 03:08:25.344 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:25.344 -07 000000591 INF: Z Motor: Entering MoveAbsStepped (DAC = 28588, sync = True, waitForSettling = False)
17-03-18 03:08:25.344 -07 000000591 INF: Z Motor: Moving to -0.130867 mm, started at -0.130159 mm, distance = -0.71 um
17-03-18 03:08:25.354 -07 000000591 INF: FPGA: Xmit ZDACW 28588\n [Z Motor]
17-03-18 03:08:25.354 -07 000000579 INF: FPGA: Recv YRDPOS 139686
17-03-18 03:08:25.354 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:08:25.354 -07 000000569 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:25.354 -07 000000561 INF: FPGA: Recv ZDACW
17-03-18 03:08:25.354 -07 000000569 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:25.354 -07 000000569 INF: Y Motor: Moving 1338 steps-14
17-03-18 03:08:25.364 -07 000000591 INF: FPGA: 'ZDACW 28588' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:25.364 -07 000000591 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:25.364 -07 000000576 INF: FPGA: Recv ZDACR 28588
17-03-18 03:08:25.374 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:25.374 -07 000000591 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:25.374 -07 000000591 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-18 03:08:25.534 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:08:25.534 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:08:25.534 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:25.534 -07 000000461 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:08:25.534 -07 000000461 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:08:25.534 -07 000000461 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:25.544 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:25.544 -07 000000461 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:25.544 -07 000000461 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 03:08:25.544 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:08:25.744 -07 000000444 INF: FPGA: Recv YMVTILE
17-03-18 03:08:25.744 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 03:08:25.794 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:25.794 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:08:25.804 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:08:25.804 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:25.804 -07 000000569 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-18 03:08:25.804 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.837 mm, average velocity = 2.135 mm/sec
17-03-18 03:08:26.544 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:26.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:26.754 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:26.754 -07 000000461 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:08:26.764 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:26.764 -07 000000569 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:26.804 -07 000000569 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:26.804 -07 000000569 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:26.804 -07 000000569 INF: Y Motor: Moved to 69.0273 after 1453 ms (table move)
17-03-18 03:08:26.804 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130867 mm (DAC = 28588)
17-03-18 03:08:26.804 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.814 -07 000000606 INF: FPGA: Recv ZSGSRD 29659
17-03-18 03:08:26.814 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:26.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.814 -07 000000461 INF: FPGA: Recv ZSGSRD 29657
17-03-18 03:08:26.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:26.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.824 -07 000000512 INF: FPGA: Recv ZSGSRD 29666
17-03-18 03:08:26.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:26.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.834 -07 000000461 INF: FPGA: Recv ZSGSRD 29661
17-03-18 03:08:26.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:26.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.844 -07 000000590 INF: FPGA: Recv ZSGSRD 29662
17-03-18 03:08:26.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:26.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.854 -07 000000444 INF: FPGA: Recv ZSGSRD 29659
17-03-18 03:08:26.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:26.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.864 -07 000000424 INF: FPGA: Recv ZSGSRD 29655
17-03-18 03:08:26.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:26.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.874 -07 000000576 INF: FPGA: Recv ZSGSRD 29663
17-03-18 03:08:26.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:26.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.884 -07 000000501 INF: FPGA: Recv ZSGSRD 29657
17-03-18 03:08:26.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:26.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:26.894 -07 000000606 INF: FPGA: Recv ZSGSRD 29661
17-03-18 03:08:26.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:26.904 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:26.904 -07 000000462 INF: FPGA: Recv ZPIEZORD 25187
17-03-18 03:08:26.914 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:26.914 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.8 V.
17-03-18 03:08:26.914 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29660 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29655 (-130.1 uncal um), Max = 29666 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:08:26.914 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29660, posNoise = 6, negNoise = 5
17-03-18 03:08:26.914 -07 000000610 INF: Z Motor: After move to -0.130867, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:26.914 -07 000000610 INF: Z Motor: Settle wait time = 1457 ms, measure time = 104 ms (allowed 150 ms), total time = 1561 ms
17-03-18 03:08:26.914 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:26.964 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-18 03:08:26.964 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:26.964 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.130865484135765. ----------
17-03-18 03:08:26.964 -07 000000610 INF: Cycle	108	Tile	12	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:26.964 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28411, sync = True, waitForSettling = True)
17-03-18 03:08:26.964 -07 000000610 INF: Z Motor: Moving to -0.130057 mm, started at -0.130865 mm, distance = 0.81 um
17-03-18 03:08:26.964 -07 000000610 INF: FPGA: Xmit ZDACW 28411\n [Z Motor]
17-03-18 03:08:26.964 -07 000000590 INF: FPGA: Recv ZDACW
17-03-18 03:08:26.974 -07 000000610 INF: FPGA: 'ZDACW 28411' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:26.974 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:26.974 -07 000000444 INF: FPGA: Recv ZDACR 28411
17-03-18 03:08:26.984 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:26.984 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:27.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.134 -07 000000461 INF: FPGA: Recv ZSGSRD 29534
17-03-18 03:08:27.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:27.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.144 -07 000000629 INF: FPGA: Recv ZSGSRD 29536
17-03-18 03:08:27.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.154 -07 000000467 INF: FPGA: Recv ZSGSRD 29540
17-03-18 03:08:27.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.164 -07 000000424 INF: FPGA: Recv ZSGSRD 29535
17-03-18 03:08:27.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.174 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.174 -07 000000512 INF: FPGA: Recv ZSGSRD 29530
17-03-18 03:08:27.184 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.184 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.184 -07 000000462 INF: FPGA: Recv ZSGSRD 29531
17-03-18 03:08:27.194 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.194 -07 000000561 INF: FPGA: Recv ZSGSRD 29535
17-03-18 03:08:27.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.204 -07 000000569 INF: FPGA: Recv ZSGSRD 29537
17-03-18 03:08:27.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.214 -07 000000455 INF: FPGA: Recv ZSGSRD 29531
17-03-18 03:08:27.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:27.224 -07 000000512 INF: FPGA: Recv ZSGSRD 29537
17-03-18 03:08:27.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.234 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:27.234 -07 000000502 INF: FPGA: Recv ZPIEZORD 25013
17-03-18 03:08:27.244 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:27.244 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.335 V. Piezo Error = -9.9 V.
17-03-18 03:08:27.244 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29535 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29535 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29530 (-129.3 uncal um), Max = 29540 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:08:27.244 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29535, posNoise = 5, negNoise = 5
17-03-18 03:08:27.244 -07 000000610 INF: Z Motor: After move to -0.130057, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:27.244 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-18 03:08:27.244 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:27.244 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:27.244 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:27.244 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:27.244 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:27.244 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:27.244 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:27.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:27.244 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:27.244 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:27.244 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:27.244 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:27.244 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:08:27.254 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:27.254 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:08:27.254 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:27.264 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:08:27.264 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:08:27.264 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:08:27.264 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:08:27.264 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28588 150\n [Camera]
17-03-18 03:08:27.464 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:27.864 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:27.864 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:27.864 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:27.864 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:27.864 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:08:27.864 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:27.864 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:27.864 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:27.984 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:27.984 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:08:28.054 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28588 787
17-03-18 03:08:28.204 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:28.244 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:08:28.244 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-18 03:08:28.244 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:28.244 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:28.244 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:08:28.354 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 369 ms.
17-03-18 03:08:28.354 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-18 03:08:28.354 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:28.364 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:28.364 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-18 03:08:28.404 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:28.404 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:28.404 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:28.404 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:28.404 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:28.404 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:28.404 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:28.404 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:08:28.414 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:28.414 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:08:28.544 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.014009,
17-03-18 03:08:28.594 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:28.594 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:28.594 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28588 150' command took 2 ms to send, 1324 ms to get response, and 1330 ms overall
17-03-18 03:08:28.594 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.130503
17-03-18 03:08:28.594 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13050 mm
17-03-18 03:08:28.594 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:28.594 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-18 03:08:28.604 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-18 03:08:28.604 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 28508, sync = True, waitForSettling = False)
17-03-18 03:08:28.604 -07 000000501 INF: Z Motor: Moving to -0.130501 mm, started at -0.130062 mm, distance = -0.44 um
17-03-18 03:08:28.604 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:28.604 -07 000000579 INF: FPGA: Recv YRDPOS 141368
17-03-18 03:08:28.614 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:28.614 -07 000000501 INF: FPGA: Xmit ZDACW 28508\n [Z Motor]
17-03-18 03:08:28.614 -07 000000626 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:28.614 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:28.614 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-18 03:08:28.614 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 03:08:28.624 -07 000000501 INF: FPGA: 'ZDACW 28508' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-18 03:08:28.624 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:28.624 -07 000000461 INF: FPGA: Recv ZDACR 28508
17-03-18 03:08:28.634 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:28.634 -07 000000501 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-18 03:08:28.634 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:28.794 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-18 03:08:28.794 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-18 03:08:28.794 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:28.794 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 386 ms.
17-03-18 03:08:28.794 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:08:28.794 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:28.804 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:28.804 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-18 03:08:28.804 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:28.804 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:08:29.004 -07 000000455 INF: FPGA: Recv YMVTILE
17-03-18 03:08:29.004 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:08:29.064 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:29.064 -07 000000629 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:08:29.074 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:08:29.074 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:29.074 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-18 03:08:29.074 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.124 mm/sec
17-03-18 03:08:30.024 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:30.024 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-18 03:08:30.034 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:30.034 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:30.054 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:30.054 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:30.054 -07 000000626 INF: Y Motor: Moved to 69.8633 after 1457 ms (table move)
17-03-18 03:08:30.064 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130501 mm (DAC = 28508)
17-03-18 03:08:30.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.064 -07 000000424 INF: FPGA: Recv ZSGSRD 29597
17-03-18 03:08:30.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:30.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.074 -07 000000462 INF: FPGA: Recv ZSGSRD 29608
17-03-18 03:08:30.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.084 -07 000000455 INF: FPGA: Recv ZSGSRD 29613
17-03-18 03:08:30.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.094 -07 000000629 INF: FPGA: Recv ZSGSRD 29603
17-03-18 03:08:30.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.104 -07 000000430 INF: FPGA: Recv ZSGSRD 29605
17-03-18 03:08:30.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.114 -07 000000502 INF: FPGA: Recv ZSGSRD 29604
17-03-18 03:08:30.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.124 -07 000000430 INF: FPGA: Recv ZSGSRD 29597
17-03-18 03:08:30.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.134 -07 000000502 INF: FPGA: Recv ZSGSRD 29604
17-03-18 03:08:30.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.144 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.144 -07 000000606 INF: FPGA: Recv ZSGSRD 29607
17-03-18 03:08:30.154 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.154 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.154 -07 000000591 INF: FPGA: Recv ZSGSRD 29607
17-03-18 03:08:30.164 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.164 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:30.164 -07 000000606 INF: FPGA: Recv ZPIEZORD 25140
17-03-18 03:08:30.174 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.174 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.8 V.
17-03-18 03:08:30.174 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29604 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29604 (-129.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29597 (-129.7 uncal um), Max = 29613 (-129.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:08:30.174 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29604, posNoise = 9, negNoise = 7
17-03-18 03:08:30.174 -07 000000610 INF: Z Motor: After move to -0.130501, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:30.174 -07 000000610 INF: Z Motor: Settle wait time = 1459 ms, measure time = 113 ms (allowed 150 ms), total time = 1572 ms
17-03-18 03:08:30.174 -07 000000610 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:30.214 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-18 03:08:30.214 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:30.214 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.130505728255826. ----------
17-03-18 03:08:30.214 -07 000000610 INF: Cycle	108	Tile	13	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:30.214 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28332, sync = True, waitForSettling = True)
17-03-18 03:08:30.214 -07 000000610 INF: Z Motor: Moving to -0.129696 mm, started at -0.130506 mm, distance = 0.81 um
17-03-18 03:08:30.214 -07 000000610 INF: FPGA: Xmit ZDACW 28332\n [Z Motor]
17-03-18 03:08:30.224 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:08:30.234 -07 000000610 INF: FPGA: 'ZDACW 28332' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:30.234 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:30.234 -07 000000512 INF: FPGA: Recv ZDACR 28332
17-03-18 03:08:30.244 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.244 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:30.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.394 -07 000000501 INF: FPGA: Recv ZSGSRD 29485
17-03-18 03:08:30.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.404 -07 000000579 INF: FPGA: Recv ZSGSRD 29472
17-03-18 03:08:30.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.414 -07 000000561 INF: FPGA: Recv ZSGSRD 29480
17-03-18 03:08:30.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.424 -07 000000467 INF: FPGA: Recv ZSGSRD 29477
17-03-18 03:08:30.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:30.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.434 -07 000000502 INF: FPGA: Recv ZSGSRD 29475
17-03-18 03:08:30.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.444 -07 000000444 INF: FPGA: Recv ZSGSRD 29477
17-03-18 03:08:30.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.454 -07 000000424 INF: FPGA: Recv ZSGSRD 29475
17-03-18 03:08:30.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.464 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.464 -07 000000462 INF: FPGA: Recv ZSGSRD 29484
17-03-18 03:08:30.474 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.474 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.474 -07 000000591 INF: FPGA: Recv ZSGSRD 29476
17-03-18 03:08:30.484 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.484 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:30.484 -07 000000576 INF: FPGA: Recv ZSGSRD 29479
17-03-18 03:08:30.494 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.494 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:30.494 -07 000000626 INF: FPGA: Recv ZPIEZORD 24936
17-03-18 03:08:30.504 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:30.504 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -10.0 V.
17-03-18 03:08:30.504 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29478 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29477 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29472 (-128.9 uncal um), Max = 29485 (-129.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:08:30.504 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29478, posNoise = 7, negNoise = 6
17-03-18 03:08:30.504 -07 000000610 INF: Z Motor: After move to -0.129696, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:30.504 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-18 03:08:30.504 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:30.504 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:30.504 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:30.504 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:30.504 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:30.504 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:30.504 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:30.504 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:30.504 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:30.504 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:30.504 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:30.504 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:30.514 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:08:30.514 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:30.514 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:08:30.514 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:30.524 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:08:30.524 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:08:30.524 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:08:30.524 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-18 03:08:30.534 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28508 150\n [Camera]
17-03-18 03:08:30.724 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:31.134 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:31.134 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:31.134 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:31.134 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:31.134 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:31.134 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:31.134 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:31.144 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-18 03:08:31.144 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:31.144 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:08:31.324 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28508 790
17-03-18 03:08:31.474 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:31.514 -07 000000579 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 03:08:31.514 -07 000000579 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-18 03:08:31.514 -07 000000579 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:31.514 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 374 ms.
17-03-18 03:08:31.514 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-18 03:08:31.514 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:31.524 -07 000000579 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-18 03:08:31.524 -07 000000579 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-18 03:08:31.524 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:31.524 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:08:31.544 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:31.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:31.664 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:31.664 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:31.664 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:31.664 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:31.664 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-18 03:08:31.674 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:31.674 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:31.674 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:31.674 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:31.674 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-18 03:08:31.854 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:08:31.854 -07 000000455 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:31.854 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28508 150' command took 2 ms to send, 1319 ms to get response, and 1329 ms overall
17-03-18 03:08:31.864 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129629
17-03-18 03:08:31.864 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12963 mm
17-03-18 03:08:31.864 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:31.864 -07 000000579 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-18 03:08:31.864 -07 000000579 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-18 03:08:31.864 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 28317, sync = True, waitForSettling = False)
17-03-18 03:08:31.864 -07 000000461 INF: Z Motor: Moving to -0.129627 mm, started at -0.129696 mm, distance = 0.07 um
17-03-18 03:08:31.864 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:31.864 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-18 03:08:31.874 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:08:31.874 -07 000000579 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:31.874 -07 000000461 INF: FPGA: Xmit ZDACW 28317\n [Z Motor]
17-03-18 03:08:31.874 -07 000000576 INF: FPGA: Recv ZDACW
17-03-18 03:08:31.874 -07 000000579 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:31.874 -07 000000579 INF: Y Motor: Moving 1342 steps-19
17-03-18 03:08:31.884 -07 000000461 INF: FPGA: 'ZDACW 28317' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-18 03:08:31.884 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:31.884 -07 000000512 INF: FPGA: Recv ZDACR 28317
17-03-18 03:08:31.894 -07 000000579 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:31.894 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:31.894 -07 000000461 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-18 03:08:32.044 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:08:32.044 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:08:32.044 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:32.054 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-18 03:08:32.054 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:08:32.054 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:32.054 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:32.054 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:08:32.054 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:32.064 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:08:32.264 -07 000000430 INF: FPGA: Recv YMVTILE
17-03-18 03:08:32.264 -07 000000579 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-18 03:08:32.314 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:32.324 -07 000000618 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:08:32.324 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:32.324 -07 000000579 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:32.324 -07 000000579 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:08:32.324 -07 000000579 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.136 mm/sec
17-03-18 03:08:33.274 -07 000000579 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:33.274 -07 000000618 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:08:33.284 -07 000000579 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:33.284 -07 000000579 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:33.314 -07 000000579 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:33.314 -07 000000579 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:33.314 -07 000000579 INF: Y Motor: Moved to 70.6885 after 1446 ms (table move)
17-03-18 03:08:33.314 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129627 mm (DAC = 28317)
17-03-18 03:08:33.314 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.314 -07 000000629 INF: FPGA: Recv ZSGSRD 29468
17-03-18 03:08:33.324 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:08:33.324 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.324 -07 000000590 INF: FPGA: Recv ZSGSRD 29465
17-03-18 03:08:33.334 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.334 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.334 -07 000000430 INF: FPGA: Recv ZSGSRD 29469
17-03-18 03:08:33.344 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.364 -07 000000629 INF: FPGA: Recv ZSGSRD 29461
17-03-18 03:08:33.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:08:33.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.384 -07 000000579 INF: FPGA: Recv ZSGSRD 29469
17-03-18 03:08:33.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:33.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.394 -07 000000502 INF: FPGA: Recv ZSGSRD 29463
17-03-18 03:08:33.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.414 -07 000000512 INF: FPGA: Recv ZSGSRD 29467
17-03-18 03:08:33.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:33.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.424 -07 000000629 INF: FPGA: Recv ZSGSRD 29460
17-03-18 03:08:33.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.444 -07 000000512 INF: FPGA: Recv ZSGSRD 29465
17-03-18 03:08:33.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:33.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.454 -07 000000462 INF: FPGA: Recv ZSGSRD 29470
17-03-18 03:08:33.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:33.464 -07 000000576 INF: FPGA: Recv ZPIEZORD 24968
17-03-18 03:08:33.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.474 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -9.9 V.
17-03-18 03:08:33.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29466 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29466 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29460 (-128.8 uncal um), Max = 29470 (-128.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:08:33.474 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29466, posNoise = 4, negNoise = 6
17-03-18 03:08:33.474 -07 000000610 INF: Z Motor: After move to -0.129627, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:33.474 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 158 ms (allowed 150 ms), total time = 1606 ms
17-03-18 03:08:33.474 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-18 03:08:33.474 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-18 03:08:33.474 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:33.474 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.129619186980263. ----------
17-03-18 03:08:33.474 -07 000000610 INF: Cycle	108	Tile	14	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:33.474 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28141, sync = True, waitForSettling = True)
17-03-18 03:08:33.474 -07 000000610 INF: Z Motor: Moving to -0.128821 mm, started at -0.129619 mm, distance = 0.80 um
17-03-18 03:08:33.474 -07 000000610 INF: FPGA: Xmit ZDACW 28141\n [Z Motor]
17-03-18 03:08:33.484 -07 000000467 INF: FPGA: Recv ZDACW
17-03-18 03:08:33.484 -07 000000610 INF: FPGA: 'ZDACW 28141' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-18 03:08:33.484 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:33.484 -07 000000430 INF: FPGA: Recv ZDACR 28141
17-03-18 03:08:33.494 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-18 03:08:33.494 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:33.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.644 -07 000000576 INF: FPGA: Recv ZSGSRD 29342
17-03-18 03:08:33.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:33.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.654 -07 000000424 INF: FPGA: Recv ZSGSRD 29345
17-03-18 03:08:33.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.664 -07 000000430 INF: FPGA: Recv ZSGSRD 29345
17-03-18 03:08:33.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.674 -07 000000569 INF: FPGA: Recv ZSGSRD 29341
17-03-18 03:08:33.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.684 -07 000000606 INF: FPGA: Recv ZSGSRD 29342
17-03-18 03:08:33.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.694 -07 000000576 INF: FPGA: Recv ZSGSRD 29342
17-03-18 03:08:33.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.704 -07 000000501 INF: FPGA: Recv ZSGSRD 29339
17-03-18 03:08:33.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.714 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.714 -07 000000430 INF: FPGA: Recv ZSGSRD 29340
17-03-18 03:08:33.724 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.724 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.724 -07 000000591 INF: FPGA: Recv ZSGSRD 29338
17-03-18 03:08:33.734 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.734 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:33.734 -07 000000462 INF: FPGA: Recv ZSGSRD 29344
17-03-18 03:08:33.744 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.744 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:33.744 -07 000000455 INF: FPGA: Recv ZPIEZORD 24803
17-03-18 03:08:33.754 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:33.754 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -10.0 V.
17-03-18 03:08:33.754 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29342 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29342 (-128.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29338 (-128.0 uncal um), Max = 29345 (-128.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:08:33.754 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29342, posNoise = 3, negNoise = 4
17-03-18 03:08:33.754 -07 000000610 INF: Z Motor: After move to -0.128821, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:33.754 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 03:08:33.754 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:33.754 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:33.754 -07 000000461 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:33.754 -07 000000629 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:33.754 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:33.754 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:33.754 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:33.754 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:33.754 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:08:33.754 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:33.754 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:33.754 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:33.764 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:33.764 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:33.764 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:08:33.764 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:33.774 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:08:33.774 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:08:33.774 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:08:33.774 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:33.774 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28317 150\n [Camera]
17-03-18 03:08:33.904 -07 000000444 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.02213,
17-03-18 03:08:33.974 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:34.374 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:34.374 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:34.374 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:34.374 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:34.374 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-18 03:08:34.374 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:34.374 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:34.384 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:34.384 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:34.384 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-18 03:08:34.564 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28317 787
17-03-18 03:08:34.714 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:34.754 -07 000000467 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-18 03:08:34.754 -07 000000467 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-18 03:08:34.754 -07 000000467 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:34.754 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:08:34.754 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:08:34.754 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:34.754 -07 000000467 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:34.754 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:34.754 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:08:34.764 -07 000000467 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-18 03:08:34.914 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:34.914 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:34.914 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:35.044 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:35.044 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:35.044 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:35.044 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:35.044 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:08:35.044 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:35.044 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:08:35.104 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:35.104 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:35.104 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28317 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-18 03:08:35.104 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:08:35.104 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128822584674685. ------
17-03-18 03:08:35.104 -07 000000606 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13548 mm
17-03-18 03:08:35.104 -07 000000606 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:35.104 -07 000000455 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:08:35.114 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-18 03:08:35.114 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-18 03:08:35.114 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:35.114 -07 000000461 INF: Z Motor: Entering MoveAbsStepped (DAC = 29595, sync = True, waitForSettling = False)
17-03-18 03:08:35.114 -07 000000461 INF: Z Motor: Moving to -0.135477 mm, started at -0.128823 mm, distance = -6.65 um
17-03-18 03:08:35.114 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:08:35.114 -07 000000455 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:08:35.114 -07 000000467 INF: FPGA: Recv YRDPOS 144770
17-03-18 03:08:35.124 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:35.124 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:35.124 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:35.124 -07 000000501 INF: Y Motor: Moving 1351 steps-29
17-03-18 03:08:35.124 -07 000000455 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:08:35.134 -07 000000461 INF: FPGA: Xmit ZDACW 29595\n [Z Motor]
17-03-18 03:08:35.134 -07 000000512 INF: FPGA: Recv ZDACW
17-03-18 03:08:35.144 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:35.144 -07 000000461 INF: FPGA: 'ZDACW 29595' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-18 03:08:35.154 -07 000000461 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:35.154 -07 000000424 INF: FPGA: Recv ZDACR 29595
17-03-18 03:08:35.164 -07 000000461 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:35.164 -07 000000461 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-18 03:08:35.324 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:08:35.324 -07 000000455 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 213 ms overall
17-03-18 03:08:35.424 -07 000000590 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:08:35.424 -07 000000590 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:08:35.424 -07 000000590 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:35.424 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:08:35.424 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:08:35.424 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:35.424 -07 000000590 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:35.434 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:35.434 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-18 03:08:35.434 -07 000000590 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:08:35.514 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 03:08:35.514 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:08:35.564 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:35.574 -07 000000461 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:08:35.574 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:35.574 -07 000000501 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:35.574 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-18 03:08:35.574 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-18 03:08:36.524 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:36.524 -07 000000444 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:08:36.534 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:36.534 -07 000000501 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:36.544 -07 000000430 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:36.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:36.564 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:36.564 -07 000000501 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:36.564 -07 000000501 INF: Y Motor: Moved to 71.5190 after 1449 ms (table move)
17-03-18 03:08:36.564 -07 000000606 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135477 mm (DAC = 29595)
17-03-18 03:08:36.564 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.564 -07 000000444 INF: FPGA: Recv ZSGSRD 30385
17-03-18 03:08:36.574 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:08:36.574 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.574 -07 000000590 INF: FPGA: Recv ZSGSRD 30377
17-03-18 03:08:36.584 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.584 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.584 -07 000000424 INF: FPGA: Recv ZSGSRD 30381
17-03-18 03:08:36.594 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.594 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.594 -07 000000591 INF: FPGA: Recv ZSGSRD 30372
17-03-18 03:08:36.604 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.604 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.604 -07 000000576 INF: FPGA: Recv ZSGSRD 30386
17-03-18 03:08:36.614 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.614 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.614 -07 000000467 INF: FPGA: Recv ZSGSRD 30379
17-03-18 03:08:36.624 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.624 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.624 -07 000000590 INF: FPGA: Recv ZSGSRD 30375
17-03-18 03:08:36.634 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.634 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.634 -07 000000424 INF: FPGA: Recv ZSGSRD 30374
17-03-18 03:08:36.644 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.644 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.644 -07 000000462 INF: FPGA: Recv ZSGSRD 30378
17-03-18 03:08:36.654 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.654 -07 000000606 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:36.654 -07 000000501 INF: FPGA: Recv ZSGSRD 30380
17-03-18 03:08:36.664 -07 000000606 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.664 -07 000000606 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:36.664 -07 000000467 INF: FPGA: Recv ZPIEZORD 26198
17-03-18 03:08:36.674 -07 000000606 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:36.674 -07 000000606 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.2 V.
17-03-18 03:08:36.674 -07 000000606 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30379 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30378 (-134.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30372 (-134.6 uncal um), Max = 30386 (-134.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-18 03:08:36.674 -07 000000606 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30379, posNoise = 7, negNoise = 7
17-03-18 03:08:36.674 -07 000000606 INF: Z Motor: After move to -0.135477, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:36.674 -07 000000606 INF: Z Motor: Settle wait time = 1452 ms, measure time = 107 ms (allowed 150 ms), total time = 1559 ms
17-03-18 03:08:36.674 -07 000000606 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:36.724 -07 000000606 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 03:08:36.724 -07 000000606 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:36.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:36.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:36.724 -07 000000591 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:36.724 -07 000000590 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:36.724 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:08:36.724 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:36.724 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:08:36.724 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:08:36.734 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:36.734 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:08:36.734 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-18 03:08:36.734 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-18 03:08:36.744 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:08:36.784 -07 000000455 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:08:37.084 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:08:37.084 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:08:37.084 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:08:37.084 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) start.
17-03-18 03:08:37.124 -07 000000629 INF: FPGA: Recv @CAMSNAP 382
17-03-18 03:08:37.124 -07 000000461 INF: FPGA: Recv CAMSNAP
17-03-18 03:08:37.124 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall
17-03-18 03:08:37.204 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2317127784, 0x0, 559484976) end. Duration was 117 ms.
17-03-18 03:08:37.204 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:37.204 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:08:37.204 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-18 03:08:37.224 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:08:37.224 -07 000000561 INF: Autofocus start
17-03-18 03:08:37.224 -07 000000561 INF: MeasureProfile start
17-03-18 03:08:37.224 -07 000000591 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:08:37.234 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:08:37.234 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:08:37.234 -07 000000561 INF: MeasureProfile done
17-03-18 03:08:37.234 -07 000000561 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 03:08:37.234 -07 000000561 INF: Autofocus finished
17-03-18 03:08:37.434 -07 000000591 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:08:37.434 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-18 03:08:37.434 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135484492665691. ----------
17-03-18 03:08:37.434 -07 000000610 INF: Cycle	108	Tile	15	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:37.444 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28090, sync = True, waitForSettling = True)
17-03-18 03:08:37.444 -07 000000610 INF: Z Motor: Moving to -0.128588 mm, started at -0.135484 mm, distance = 6.90 um
17-03-18 03:08:37.444 -07 000000610 INF: FPGA: Xmit ZDACW 28090\n [Z Motor]
17-03-18 03:08:37.444 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 03:08:37.454 -07 000000610 INF: FPGA: 'ZDACW 28090' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.454 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:37.454 -07 000000512 INF: FPGA: Recv ZDACR 28090
17-03-18 03:08:37.464 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.464 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:37.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.614 -07 000000618 INF: FPGA: Recv ZSGSRD 29308
17-03-18 03:08:37.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:37.624 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.624 -07 000000590 INF: FPGA: Recv ZSGSRD 29314
17-03-18 03:08:37.634 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.634 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.634 -07 000000424 INF: FPGA: Recv ZSGSRD 29307
17-03-18 03:08:37.644 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.644 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.644 -07 000000591 INF: FPGA: Recv ZSGSRD 29298
17-03-18 03:08:37.654 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.654 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.654 -07 000000424 INF: FPGA: Recv ZSGSRD 29305
17-03-18 03:08:37.664 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.664 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.664 -07 000000591 INF: FPGA: Recv ZSGSRD 29309
17-03-18 03:08:37.674 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.674 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.674 -07 000000430 INF: FPGA: Recv ZSGSRD 29309
17-03-18 03:08:37.684 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.684 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.684 -07 000000444 INF: FPGA: Recv ZSGSRD 29309
17-03-18 03:08:37.694 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.694 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.694 -07 000000430 INF: FPGA: Recv ZSGSRD 29303
17-03-18 03:08:37.704 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.704 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:37.704 -07 000000629 INF: FPGA: Recv ZSGSRD 29307
17-03-18 03:08:37.714 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.714 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:37.714 -07 000000569 INF: FPGA: Recv ZPIEZORD 24761
17-03-18 03:08:37.724 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:37.724 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.286 V. Piezo Error = -10.0 V.
17-03-18 03:08:37.724 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29307 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29308 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29298 (-127.8 uncal um), Max = 29314 (-127.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-18 03:08:37.724 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29307, posNoise = 7, negNoise = 9
17-03-18 03:08:37.724 -07 000000610 INF: Z Motor: After move to -0.128588, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:37.724 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-18 03:08:37.724 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:37.724 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:37.724 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:37.724 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:37.724 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:37.724 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:37.724 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:37.724 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:37.724 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:08:37.724 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:37.724 -07 000000629 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:37.724 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:37.724 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:37.724 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:37.734 -07 000000629 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-18 03:08:37.734 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:37.734 -07 000000629 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-18 03:08:37.734 -07 000000629 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:37.734 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-18 03:08:37.744 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:08:37.744 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28266 150\n [Camera]
17-03-18 03:08:37.944 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:38.344 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:38.344 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:38.344 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:38.344 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:38.344 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-18 03:08:38.344 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:38.344 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:38.344 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:38.344 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:38.344 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-18 03:08:38.534 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28266 787
17-03-18 03:08:38.684 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:38.724 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:08:38.724 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:08:38.724 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:08:38.724 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:38.724 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:08:38.724 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:38.724 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:38.724 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-18 03:08:38.724 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:38.734 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:08:38.884 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:38.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:38.884 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:38.994 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:38.994 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:38.994 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:39.004 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:39.004 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:08:39.004 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:39.004 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:08:39.074 -07 000000629 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:08:39.074 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:39.074 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28266 150' command took 2 ms to send, 1321 ms to get response, and 1329 ms overall
17-03-18 03:08:39.074 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.128928
17-03-18 03:08:39.074 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12893 mm
17-03-18 03:08:39.074 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:39.074 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-18 03:08:39.074 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-18 03:08:39.074 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:39.074 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28164, sync = True, waitForSettling = False)
17-03-18 03:08:39.074 -07 000000576 INF: Z Motor: Moving to -0.128927 mm, started at -0.128598 mm, distance = -0.33 um
17-03-18 03:08:39.074 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-18 03:08:39.084 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:39.084 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:39.084 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:39.084 -07 000000462 INF: Y Motor: Moving 1350 steps-28
17-03-18 03:08:39.084 -07 000000576 INF: FPGA: Xmit ZDACW 28164\n [Z Motor]
17-03-18 03:08:39.084 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:08:39.094 -07 000000576 INF: FPGA: 'ZDACW 28164' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:08:39.094 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:39.104 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:39.104 -07 000000502 INF: FPGA: Recv ZDACR 28164
17-03-18 03:08:39.114 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:39.114 -07 000000576 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 03:08:39.314 -07 000000467 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.016692,
17-03-18 03:08:39.384 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:08:39.384 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:08:39.384 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:39.384 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-18 03:08:39.384 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:08:39.384 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:39.384 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:39.384 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:08:39.384 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-18 03:08:39.394 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-18 03:08:39.474 -07 000000590 INF: FPGA: Recv YMVTILE
17-03-18 03:08:39.474 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-18 03:08:39.514 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:39.514 -07 000000444 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:08:39.524 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:39.524 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:39.524 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-18 03:08:39.524 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.163 mm/sec
17-03-18 03:08:40.474 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:40.474 -07 000000591 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:08:40.484 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:40.484 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:40.504 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:40.504 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:40.504 -07 000000462 INF: Y Motor: Moved to 72.3496 after 1433 ms (table move)
17-03-18 03:08:40.514 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128927 mm (DAC = 28164)
17-03-18 03:08:40.514 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.514 -07 000000467 INF: FPGA: Recv ZSGSRD 29357
17-03-18 03:08:40.524 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:40.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.524 -07 000000618 INF: FPGA: Recv ZSGSRD 29359
17-03-18 03:08:40.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.534 -07 000000430 INF: FPGA: Recv ZSGSRD 29355
17-03-18 03:08:40.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.544 -07 000000606 INF: FPGA: Recv ZSGSRD 29354
17-03-18 03:08:40.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.554 -07 000000502 INF: FPGA: Recv ZSGSRD 29357
17-03-18 03:08:40.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.564 -07 000000561 INF: FPGA: Recv ZSGSRD 29363
17-03-18 03:08:40.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.574 -07 000000501 INF: FPGA: Recv ZSGSRD 29361
17-03-18 03:08:40.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.584 -07 000000590 INF: FPGA: Recv ZSGSRD 29360
17-03-18 03:08:40.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.594 -07 000000579 INF: FPGA: Recv ZSGSRD 29353
17-03-18 03:08:40.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.604 -07 000000512 INF: FPGA: Recv ZSGSRD 29359
17-03-18 03:08:40.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.614 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:40.614 -07 000000629 INF: FPGA: Recv ZPIEZORD 24870
17-03-18 03:08:40.624 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.624 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.298 V. Piezo Error = -9.8 V.
17-03-18 03:08:40.624 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29358 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29358 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29353 (-128.1 uncal um), Max = 29363 (-128.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:08:40.624 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29358, posNoise = 5, negNoise = 5
17-03-18 03:08:40.624 -07 000000610 INF: Z Motor: After move to -0.128927, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:40.624 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 109 ms (allowed 150 ms), total time = 1544 ms
17-03-18 03:08:40.624 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:40.674 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-18 03:08:40.674 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:40.674 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.128925372068953. ----------
17-03-18 03:08:40.674 -07 000000610 INF: Cycle	108	Tile	16	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:40.674 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27988, sync = True, waitForSettling = True)
17-03-18 03:08:40.674 -07 000000610 INF: Z Motor: Moving to -0.128121 mm, started at -0.128925 mm, distance = 0.80 um
17-03-18 03:08:40.674 -07 000000610 INF: FPGA: Xmit ZDACW 27988\n [Z Motor]
17-03-18 03:08:40.674 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 03:08:40.684 -07 000000610 INF: FPGA: 'ZDACW 27988' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:40.684 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:40.684 -07 000000444 INF: FPGA: Recv ZDACR 27988
17-03-18 03:08:40.694 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.694 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:40.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.844 -07 000000591 INF: FPGA: Recv ZSGSRD 29233
17-03-18 03:08:40.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:40.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.854 -07 000000561 INF: FPGA: Recv ZSGSRD 29234
17-03-18 03:08:40.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.864 -07 000000591 INF: FPGA: Recv ZSGSRD 29234
17-03-18 03:08:40.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.874 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.874 -07 000000590 INF: FPGA: Recv ZSGSRD 29230
17-03-18 03:08:40.884 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.884 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.884 -07 000000561 INF: FPGA: Recv ZSGSRD 29233
17-03-18 03:08:40.894 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.894 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.894 -07 000000501 INF: FPGA: Recv ZSGSRD 29235
17-03-18 03:08:40.904 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.904 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.904 -07 000000512 INF: FPGA: Recv ZSGSRD 29236
17-03-18 03:08:40.914 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.914 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.914 -07 000000606 INF: FPGA: Recv ZSGSRD 29233
17-03-18 03:08:40.924 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.924 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.924 -07 000000502 INF: FPGA: Recv ZSGSRD 29237
17-03-18 03:08:40.934 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.934 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:40.934 -07 000000467 INF: FPGA: Recv ZSGSRD 29236
17-03-18 03:08:40.944 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.944 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:40.944 -07 000000591 INF: FPGA: Recv ZPIEZORD 24727
17-03-18 03:08:40.954 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:40.954 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.9 V.
17-03-18 03:08:40.954 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29234 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29234 (-127.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29230 (-127.3 uncal um), Max = 29237 (-127.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-18 03:08:40.954 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29234, posNoise = 3, negNoise = 4
17-03-18 03:08:40.954 -07 000000610 INF: Z Motor: After move to -0.128121, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:40.954 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-18 03:08:40.954 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:40.954 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:40.954 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:40.954 -07 000000467 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:40.954 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:40.954 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:40.954 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:40.954 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:40.954 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:08:40.954 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:40.954 -07 000000430 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:08:40.954 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:40.954 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:40.954 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:40.954 -07 000000430 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:08:40.954 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:40.964 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-18 03:08:40.964 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:08:40.974 -07 000000430 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-18 03:08:40.974 -07 000000430 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-18 03:08:40.974 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28164 150\n [Camera]
17-03-18 03:08:41.174 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:41.544 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:41.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:41.574 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:41.574 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:41.574 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:41.574 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:41.584 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:41.584 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:41.584 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:41.584 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:08:41.584 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:41.584 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2331803864, 0x0, 391868352) start.
17-03-18 03:08:41.764 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28164 787
17-03-18 03:08:41.914 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:41.964 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2331803864, 0x0, 391868352) end. Duration was 377 ms.
17-03-18 03:08:41.964 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-18 03:08:41.964 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:41.964 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 380 ms.
17-03-18 03:08:41.964 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-18 03:08:41.964 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:41.964 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:41.964 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-18 03:08:41.964 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:41.974 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-18 03:08:42.114 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:42.114 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:42.114 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:42.114 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:42.114 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-18 03:08:42.114 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:42.114 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:42.114 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:42.234 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:42.234 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-18 03:08:42.304 -07 000000591 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:42.304 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:42.304 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28164 150' command took 2 ms to send, 1324 ms to get response, and 1329 ms overall
17-03-18 03:08:42.304 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.128683
17-03-18 03:08:42.304 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12868 mm
17-03-18 03:08:42.304 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:42.304 -07 000000455 INF: Z Motor: Entering MoveAbsStepped (DAC = 28111, sync = True, waitForSettling = False)
17-03-18 03:08:42.304 -07 000000455 INF: Z Motor: Moving to -0.128684 mm, started at -0.128129 mm, distance = -0.56 um
17-03-18 03:08:42.314 -07 000000455 INF: FPGA: Xmit ZDACW 28111\n [Z Motor]
17-03-18 03:08:42.314 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-18 03:08:42.314 -07 000000626 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-18 03:08:42.314 -07 000000461 INF: FPGA: Recv ZDACW
17-03-18 03:08:42.324 -07 000000455 INF: FPGA: 'ZDACW 28111' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:42.324 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:42.324 -07 000000629 INF: FPGA: Recv YRDPOS 148172
17-03-18 03:08:42.334 -07 000000455 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:42.334 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:42.334 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:42.334 -07 000000626 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:42.334 -07 000000626 INF: Y Motor: Moving 1349 steps-27
17-03-18 03:08:42.334 -07 000000591 INF: FPGA: Recv ZDACR 28111
17-03-18 03:08:42.344 -07 000000455 INF: FPGA: 'ZDACR' command took 4 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:42.344 -07 000000455 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-18 03:08:42.344 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:42.494 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:08:42.494 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:08:42.494 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:42.494 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:42.494 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:08:42.604 -07 000000444 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-18 03:08:42.604 -07 000000444 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-18 03:08:42.604 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:42.614 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:42.614 -07 000000444 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-18 03:08:42.714 -07 000000629 INF: FPGA: Recv YMVTILE
17-03-18 03:08:42.714 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-18 03:08:42.764 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:42.764 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:08:42.774 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:08:42.774 -07 000000626 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:42.774 -07 000000626 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-18 03:08:42.774 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.843 mm, average velocity = 2.201 mm/sec
17-03-18 03:08:43.724 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:43.724 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:08:43.734 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:43.734 -07 000000626 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:43.754 -07 000000626 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:43.754 -07 000000626 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:43.754 -07 000000626 INF: Y Motor: Moved to 73.1763 after 1448 ms (table move)
17-03-18 03:08:43.764 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128684 mm (DAC = 28111)
17-03-18 03:08:43.764 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.764 -07 000000462 INF: FPGA: Recv ZSGSRD 29325
17-03-18 03:08:43.774 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:43.774 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.774 -07 000000461 INF: FPGA: Recv ZSGSRD 29317
17-03-18 03:08:43.784 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:43.784 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.784 -07 000000591 INF: FPGA: Recv ZSGSRD 29321
17-03-18 03:08:43.794 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:43.794 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.794 -07 000000561 INF: FPGA: Recv ZSGSRD 29325
17-03-18 03:08:43.804 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:43.814 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.814 -07 000000626 INF: FPGA: Recv ZSGSRD 29320
17-03-18 03:08:43.824 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:43.824 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.824 -07 000000455 INF: FPGA: Recv ZSGSRD 29317
17-03-18 03:08:43.834 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:43.834 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.834 -07 000000502 INF: FPGA: Recv ZSGSRD 29319
17-03-18 03:08:43.844 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:43.844 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.844 -07 000000590 INF: FPGA: Recv ZSGSRD 29321
17-03-18 03:08:43.854 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:43.854 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.854 -07 000000576 INF: FPGA: Recv ZSGSRD 29320
17-03-18 03:08:43.864 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:43.864 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:43.864 -07 000000467 INF: FPGA: Recv ZSGSRD 29320
17-03-18 03:08:43.874 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:43.874 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:43.874 -07 000000561 INF: FPGA: Recv ZPIEZORD 24886
17-03-18 03:08:43.884 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:43.884 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -9.7 V.
17-03-18 03:08:43.884 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29320 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29320 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29317 (-127.9 uncal um), Max = 29325 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-18 03:08:43.884 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29320, posNoise = 5, negNoise = 3
17-03-18 03:08:43.884 -07 000000610 INF: Z Motor: After move to -0.128684, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:43.884 -07 000000610 INF: Z Motor: Settle wait time = 1451 ms, measure time = 119 ms (allowed 150 ms), total time = 1570 ms
17-03-18 03:08:43.884 -07 000000610 INF: Z Motor: Waiting extra 31 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:43.924 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-18 03:08:43.924 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:43.924 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.128681252007566. ----------
17-03-18 03:08:43.924 -07 000000610 INF: Cycle	108	Tile	17	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:43.924 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27934, sync = True, waitForSettling = True)
17-03-18 03:08:43.924 -07 000000610 INF: Z Motor: Moving to -0.127874 mm, started at -0.128681 mm, distance = 0.81 um
17-03-18 03:08:43.924 -07 000000610 INF: FPGA: Xmit ZDACW 27934\n [Z Motor]
17-03-18 03:08:43.924 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 03:08:43.934 -07 000000610 INF: FPGA: 'ZDACW 27934' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:43.934 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:43.934 -07 000000512 INF: FPGA: Recv ZDACR 27934
17-03-18 03:08:43.944 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:43.944 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:44.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.094 -07 000000430 INF: FPGA: Recv ZSGSRD 29191
17-03-18 03:08:44.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:44.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.104 -07 000000502 INF: FPGA: Recv ZSGSRD 29203
17-03-18 03:08:44.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:44.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.124 -07 000000430 INF: FPGA: Recv ZSGSRD 29200
17-03-18 03:08:44.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:44.134 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.134 -07 000000502 INF: FPGA: Recv ZSGSRD 29195
17-03-18 03:08:44.144 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:44.164 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.164 -07 000000461 INF: FPGA: Recv ZSGSRD 29187
17-03-18 03:08:44.174 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:08:44.194 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.194 -07 000000501 INF: FPGA: Recv ZSGSRD 29198
17-03-18 03:08:44.204 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:08:44.204 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.204 -07 000000618 INF: FPGA: Recv ZSGSRD 29198
17-03-18 03:08:44.214 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:44.214 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.214 -07 000000444 INF: FPGA: Recv ZSGSRD 29190
17-03-18 03:08:44.224 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:44.224 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.224 -07 000000606 INF: FPGA: Recv ZSGSRD 29197
17-03-18 03:08:44.234 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:44.234 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:44.234 -07 000000591 INF: FPGA: Recv ZSGSRD 29189
17-03-18 03:08:44.244 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:44.244 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:44.244 -07 000000502 INF: FPGA: Recv ZPIEZORD 24676
17-03-18 03:08:44.254 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:44.254 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.9 V.
17-03-18 03:08:44.254 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29195 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29196 (-127.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29187 (-127.1 uncal um), Max = 29203 (-127.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-18 03:08:44.254 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29195, posNoise = 8, negNoise = 8
17-03-18 03:08:44.254 -07 000000610 INF: Z Motor: After move to -0.127874, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:44.254 -07 000000610 INF: Z Motor: MoveAbsStepped took 326 ms)
17-03-18 03:08:44.254 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:44.254 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:44.254 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:44.254 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:44.254 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:44.254 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:44.254 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:44.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:44.254 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:44.254 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:44.254 -07 000000591 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:44.254 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:44.254 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:44.254 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:44.264 -07 000000591 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:08:44.264 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:44.274 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-18 03:08:44.274 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-18 03:08:44.274 -07 000000591 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-18 03:08:44.274 -07 000000591 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-18 03:08:44.284 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28111 150\n [Camera]
17-03-18 03:08:44.484 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:44.674 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.009895,
17-03-18 03:08:44.884 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:44.884 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:44.884 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:44.884 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:44.884 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:44.884 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:44.884 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:44.884 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-18 03:08:44.894 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:44.894 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-18 03:08:45.074 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28111 787
17-03-18 03:08:45.224 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:45.274 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 386 ms.
17-03-18 03:08:45.274 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-18 03:08:45.274 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:45.274 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:45.274 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-18 03:08:45.284 -07 000000591 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 388 ms.
17-03-18 03:08:45.284 -07 000000591 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-18 03:08:45.284 -07 000000591 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:45.284 -07 000000591 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:45.294 -07 000000591 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-18 03:08:45.414 -07 000000455 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:45.414 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:45.424 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:45.424 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:45.424 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:45.424 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:45.424 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-18 03:08:45.424 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:45.434 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:45.434 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-18 03:08:45.614 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:45.614 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:45.614 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28111 150' command took 2 ms to send, 1321 ms to get response, and 1330 ms overall
17-03-18 03:08:45.614 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128229
17-03-18 03:08:45.614 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12823 mm
17-03-18 03:08:45.614 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:45.614 -07 000000606 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-18 03:08:45.614 -07 000000606 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-18 03:08:45.614 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:45.614 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 28012, sync = True, waitForSettling = False)
17-03-18 03:08:45.614 -07 000000502 INF: Z Motor: Moving to -0.128231 mm, started at -0.127878 mm, distance = -0.35 um
17-03-18 03:08:45.614 -07 000000569 INF: FPGA: Recv YRDPOS 149865
17-03-18 03:08:45.624 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:45.624 -07 000000606 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:45.624 -07 000000606 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:45.624 -07 000000606 INF: Y Motor: Moving 1354 steps-33
17-03-18 03:08:45.624 -07 000000502 INF: FPGA: Xmit ZDACW 28012\n [Z Motor]
17-03-18 03:08:45.624 -07 000000444 INF: FPGA: Recv ZDACW
17-03-18 03:08:45.634 -07 000000502 INF: FPGA: 'ZDACW 28012' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-18 03:08:45.634 -07 000000606 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:45.644 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:45.644 -07 000000591 INF: FPGA: Recv ZDACR 28012
17-03-18 03:08:45.654 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-18 03:08:45.654 -07 000000502 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-18 03:08:45.804 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 03:08:45.804 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-18 03:08:45.804 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:45.804 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-18 03:08:45.804 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:08:45.804 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:08:45.804 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-18 03:08:45.804 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:45.814 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:45.814 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:08:46.004 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-18 03:08:46.004 -07 000000606 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-18 03:08:46.044 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:46.044 -07 000000430 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:08:46.054 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-18 03:08:46.054 -07 000000606 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:46.054 -07 000000606 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-18 03:08:46.054 -07 000000606 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.181 mm/sec
17-03-18 03:08:46.544 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:46.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:47.004 -07 000000606 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:47.004 -07 000000626 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:08:47.014 -07 000000606 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:47.014 -07 000000606 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:47.034 -07 000000606 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:47.034 -07 000000606 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-18 03:08:47.034 -07 000000606 INF: Y Motor: Moved to 74.0083 after 1417 ms (table move)
17-03-18 03:08:47.034 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128231 mm (DAC = 28012)
17-03-18 03:08:47.034 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.034 -07 000000590 INF: FPGA: Recv ZSGSRD 29244
17-03-18 03:08:47.044 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:47.044 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.044 -07 000000455 INF: FPGA: Recv ZSGSRD 29247
17-03-18 03:08:47.054 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.054 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.054 -07 000000561 INF: FPGA: Recv ZSGSRD 29247
17-03-18 03:08:47.064 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.064 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.064 -07 000000502 INF: FPGA: Recv ZSGSRD 29255
17-03-18 03:08:47.074 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.074 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.074 -07 000000569 INF: FPGA: Recv ZSGSRD 29255
17-03-18 03:08:47.084 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.084 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.084 -07 000000462 INF: FPGA: Recv ZSGSRD 29257
17-03-18 03:08:47.094 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.094 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.094 -07 000000455 INF: FPGA: Recv ZSGSRD 29255
17-03-18 03:08:47.104 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.104 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.104 -07 000000618 INF: FPGA: Recv ZSGSRD 29245
17-03-18 03:08:47.114 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.114 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.114 -07 000000590 INF: FPGA: Recv ZSGSRD 29248
17-03-18 03:08:47.124 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.124 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.124 -07 000000502 INF: FPGA: Recv ZSGSRD 29248
17-03-18 03:08:47.134 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.134 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:47.134 -07 000000606 INF: FPGA: Recv ZPIEZORD 24761
17-03-18 03:08:47.144 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:47.144 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.274 V. Piezo Error = -9.8 V.
17-03-18 03:08:47.144 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29250 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29248 (-127.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29244 (-127.4 uncal um), Max = 29257 (-127.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:08:47.144 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29250, posNoise = 7, negNoise = 6
17-03-18 03:08:47.144 -07 000000610 INF: Z Motor: After move to -0.128231, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:47.144 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 105 ms (allowed 150 ms), total time = 1524 ms
17-03-18 03:08:47.144 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:47.194 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-18 03:08:47.194 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:47.194 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.128231557157643. ----------
17-03-18 03:08:47.194 -07 000000610 INF: Cycle	108	Tile	18	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:47.194 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27835, sync = True, waitForSettling = True)
17-03-18 03:08:47.194 -07 000000610 INF: Z Motor: Moving to -0.127420 mm, started at -0.128232 mm, distance = 0.81 um
17-03-18 03:08:47.194 -07 000000610 INF: FPGA: Xmit ZDACW 27835\n [Z Motor]
17-03-18 03:08:47.194 -07 000000629 INF: FPGA: Recv ZDACW
17-03-18 03:08:47.204 -07 000000610 INF: FPGA: 'ZDACW 27835' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-18 03:08:47.204 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:47.204 -07 000000455 INF: FPGA: Recv ZDACR 27835
17-03-18 03:08:47.214 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.214 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:47.364 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.364 -07 000000590 INF: FPGA: Recv ZSGSRD 29123
17-03-18 03:08:47.374 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:47.374 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.374 -07 000000461 INF: FPGA: Recv ZSGSRD 29123
17-03-18 03:08:47.384 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.384 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.384 -07 000000444 INF: FPGA: Recv ZSGSRD 29126
17-03-18 03:08:47.394 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.394 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.394 -07 000000467 INF: FPGA: Recv ZSGSRD 29122
17-03-18 03:08:47.404 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.404 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.404 -07 000000512 INF: FPGA: Recv ZSGSRD 29131
17-03-18 03:08:47.414 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.414 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.414 -07 000000430 INF: FPGA: Recv ZSGSRD 29126
17-03-18 03:08:47.424 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.424 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.424 -07 000000626 INF: FPGA: Recv ZSGSRD 29124
17-03-18 03:08:47.434 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.434 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.434 -07 000000561 INF: FPGA: Recv ZSGSRD 29123
17-03-18 03:08:47.444 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.444 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.444 -07 000000629 INF: FPGA: Recv ZSGSRD 29122
17-03-18 03:08:47.454 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.454 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:47.454 -07 000000455 INF: FPGA: Recv ZSGSRD 29119
17-03-18 03:08:47.464 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.464 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:47.464 -07 000000569 INF: FPGA: Recv ZPIEZORD 24588
17-03-18 03:08:47.474 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:47.474 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.247 V. Piezo Error = -9.9 V.
17-03-18 03:08:47.474 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29124 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29123 (-126.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29119 (-126.6 uncal um), Max = 29131 (-126.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-18 03:08:47.474 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29124, posNoise = 7, negNoise = 5
17-03-18 03:08:47.474 -07 000000610 INF: Z Motor: After move to -0.127420, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:47.474 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-18 03:08:47.474 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:47.474 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:47.474 -07 000000455 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:47.474 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:47.474 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:47.474 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:47.474 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:47.474 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:47.474 -07 000000461 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:47.474 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:47.474 -07 000000467 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-18 03:08:47.474 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:47.484 -07 000000467 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-18 03:08:47.484 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:47.484 -07 000000461 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-18 03:08:47.484 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:47.494 -07 000000467 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-18 03:08:47.494 -07 000000467 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:47.494 -07 000000461 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:08:47.494 -07 000000461 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-18 03:08:47.494 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 28012 150\n [Camera]
17-03-18 03:08:47.694 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:48.094 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:48.094 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:48.094 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:48.094 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:48.094 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-18 03:08:48.104 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:48.104 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:48.104 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:48.104 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:48.104 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-18 03:08:48.284 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28012 787
17-03-18 03:08:48.434 -07 000000430 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:48.474 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-18 03:08:48.474 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-18 03:08:48.474 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:48.474 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 378 ms.
17-03-18 03:08:48.474 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-18 03:08:48.474 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:48.484 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:08:48.484 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-18 03:08:48.484 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:08:48.494 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-18 03:08:48.634 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:48.634 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:48.634 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:48.634 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:48.634 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-18 03:08:48.634 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:48.634 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:48.634 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:48.634 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:48.634 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-18 03:08:48.824 -07 000000590 INF: FPGA: Recv @CAMDBLSNAP 1322
17-03-18 03:08:48.824 -07 000000444 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:48.824 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 28012 150' command took 2 ms to send, 1323 ms to get response, and 1329 ms overall
17-03-18 03:08:48.824 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-18 03:08:48.824 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127422106427781. ------
17-03-18 03:08:48.834 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:08:48.834 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13343 mm
17-03-18 03:08:48.834 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-18 03:08:48.834 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:08:48.834 -07 000000430 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-18 03:08:48.834 -07 000000430 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-18 03:08:48.834 -07 000000606 INF: Z Motor: Entering MoveAbsStepped (DAC = 29147, sync = True, waitForSettling = False)
17-03-18 03:08:48.834 -07 000000606 INF: Z Motor: Moving to -0.133426 mm, started at -0.127422 mm, distance = -6.00 um
17-03-18 03:08:48.844 -07 000000606 INF: FPGA: Xmit ZDACW 29147\n [Z Motor]
17-03-18 03:08:48.844 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:48.844 -07 000000462 INF: FPGA: Recv ZDACW
17-03-18 03:08:48.854 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:48.854 -07 000000606 INF: FPGA: 'ZDACW 29147' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-18 03:08:48.854 -07 000000629 INF: FPGA: Recv YRDPOS 151569
17-03-18 03:08:48.864 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-18 03:08:48.864 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-18 03:08:48.864 -07 000000430 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:48.864 -07 000000430 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-18 03:08:48.864 -07 000000430 INF: Y Motor: Moving 1351 steps-29
17-03-18 03:08:48.874 -07 000000606 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:48.874 -07 000000629 INF: FPGA: Recv ZDACR 29147
17-03-18 03:08:48.884 -07 000000430 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-18 03:08:48.884 -07 000000606 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-18 03:08:48.884 -07 000000606 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-18 03:08:49.014 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-18 03:08:49.014 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-18 03:08:49.014 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:49.014 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:08:49.014 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-18 03:08:49.014 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:49.014 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:49.014 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-18 03:08:49.014 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:49.024 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-18 03:08:49.064 -07 000000444 INF: FPGA: Recv FOCMRRFOC
17-03-18 03:08:49.064 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-18 03:08:49.254 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-18 03:08:49.254 -07 000000430 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-18 03:08:49.284 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:49.294 -07 000000576 INF: FPGA: Recv YRDPOS 153255
17-03-18 03:08:49.294 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-18 03:08:49.294 -07 000000430 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:49.294 -07 000000430 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-18 03:08:49.294 -07 000000430 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-18 03:08:50.034 -07 000000629 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.020806,
17-03-18 03:08:50.244 -07 000000430 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-18 03:08:50.244 -07 000000618 INF: FPGA: Recv YRDPOS 153256
17-03-18 03:08:50.254 -07 000000430 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:50.254 -07 000000430 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-18 03:08:50.274 -07 000000430 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004383, tolerance = 0.500000 mm
17-03-18 03:08:50.274 -07 000000430 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-18 03:08:50.274 -07 000000430 INF: Y Motor: Moved to 74.8320 after 1443 ms (table move)
17-03-18 03:08:50.284 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133426 mm (DAC = 29147)
17-03-18 03:08:50.284 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.284 -07 000000629 INF: FPGA: Recv ZSGSRD 30057
17-03-18 03:08:50.294 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-18 03:08:50.294 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.294 -07 000000591 INF: FPGA: Recv ZSGSRD 30052
17-03-18 03:08:50.304 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.304 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.304 -07 000000561 INF: FPGA: Recv ZSGSRD 30053
17-03-18 03:08:50.314 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.314 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.314 -07 000000455 INF: FPGA: Recv ZSGSRD 30052
17-03-18 03:08:50.324 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.324 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.324 -07 000000467 INF: FPGA: Recv ZSGSRD 30062
17-03-18 03:08:50.334 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.334 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.334 -07 000000462 INF: FPGA: Recv ZSGSRD 30070
17-03-18 03:08:50.344 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.344 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.344 -07 000000591 INF: FPGA: Recv ZSGSRD 30060
17-03-18 03:08:50.354 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.354 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.354 -07 000000569 INF: FPGA: Recv ZSGSRD 30063
17-03-18 03:08:50.364 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.364 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.364 -07 000000444 INF: FPGA: Recv ZSGSRD 30055
17-03-18 03:08:50.374 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.374 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:50.374 -07 000000618 INF: FPGA: Recv ZSGSRD 30056
17-03-18 03:08:50.384 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.384 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:50.384 -07 000000424 INF: FPGA: Recv ZPIEZORD 25846
17-03-18 03:08:50.394 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:50.394 -07 000000502 INF: Z Motor: Piezo is near 35.2 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.448 V. Piezo Error = -9.3 V.
17-03-18 03:08:50.394 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30058 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30056 (-132.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30052 (-132.6 uncal um), Max = 30070 (-132.7 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:08:50.394 -07 000000502 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30058, posNoise = 12, negNoise = 6
17-03-18 03:08:50.394 -07 000000502 INF: Z Motor: After move to -0.133426, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:50.394 -07 000000502 INF: Z Motor: Settle wait time = 1447 ms, measure time = 108 ms (allowed 150 ms), total time = 1555 ms
17-03-18 03:08:50.394 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-18 03:08:50.444 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-18 03:08:50.444 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-18 03:08:50.444 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:50.444 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:50.444 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:50.444 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:50.444 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-18 03:08:50.444 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:50.444 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-18 03:08:50.454 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-18 03:08:50.454 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:50.454 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-18 03:08:50.454 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-18 03:08:50.454 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-18 03:08:50.464 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera]
17-03-18 03:08:50.504 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-18 03:08:50.804 -07 000000606 INF: FPGA: Recv @CAMSNAP img rdy 340
17-03-18 03:08:50.804 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340
17-03-18 03:08:50.804 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-18 03:08:50.934 -07 000000455 INF: FPGA: Recv @CAMSNAP 380
17-03-18 03:08:50.934 -07 000000455 INF: FPGA: Recv CAMSNAP
17-03-18 03:08:50.934 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617479552, 0x0, 559484976) start.
17-03-18 03:08:50.934 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 468 ms to get response, and 476 ms overall
17-03-18 03:08:51.054 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617479552, 0x0, 559484976) end. Duration was 115 ms.
17-03-18 03:08:51.054 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:51.054 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-18 03:08:51.054 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 247 ms.
17-03-18 03:08:51.134 -07 000000579 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-18 03:08:51.134 -07 000000629 INF: Autofocus start
17-03-18 03:08:51.134 -07 000000629 INF: MeasureProfile start
17-03-18 03:08:51.134 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-18 03:08:51.144 -07 000000579 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-18 03:08:51.144 -07 000000579 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-18 03:08:51.144 -07 000000629 INF: MeasureProfile done
17-03-18 03:08:51.144 -07 000000629 INF: X=-16  Z correction [um]=-0.08128808
17-03-18 03:08:51.144 -07 000000629 INF: Autofocus finished
17-03-18 03:08:51.344 -07 000000444 INF: FPGA: Recv FOCMRRIMG
17-03-18 03:08:51.344 -07 000000579 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-18 03:08:51.354 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.133422320568186. ----------
17-03-18 03:08:51.354 -07 000000610 INF: Cycle	108	Tile	19	Exposure Settings		A	402	G	193	T	193	C	402
17-03-18 03:08:51.354 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27642, sync = True, waitForSettling = True)
17-03-18 03:08:51.354 -07 000000610 INF: Z Motor: Moving to -0.126537 mm, started at -0.133422 mm, distance = 6.89 um
17-03-18 03:08:51.354 -07 000000610 INF: FPGA: Xmit ZDACW 27642\n [Z Motor]
17-03-18 03:08:51.364 -07 000000591 INF: FPGA: Recv ZDACW
17-03-18 03:08:51.364 -07 000000610 INF: FPGA: 'ZDACW 27642' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-18 03:08:51.364 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-18 03:08:51.364 -07 000000561 INF: FPGA: Recv ZDACR 27642
17-03-18 03:08:51.374 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-18 03:08:51.374 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-18 03:08:51.524 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.524 -07 000000590 INF: FPGA: Recv ZSGSRD 28987
17-03-18 03:08:51.534 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-18 03:08:51.534 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.534 -07 000000629 INF: FPGA: Recv ZSGSRD 28989
17-03-18 03:08:51.544 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.544 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.544 -07 000000502 INF: FPGA: Recv ZSGSRD 28985
17-03-18 03:08:51.544 -07 000000467 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-18 03:08:51.544 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 107. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1590, R2=1656, Total=3246. Warn if over 250 bubbles per interval.
17-03-18 03:08:51.554 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.554 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.554 -07 000000629 INF: FPGA: Recv ZSGSRD 28984
17-03-18 03:08:51.564 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.564 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.564 -07 000000502 INF: FPGA: Recv ZSGSRD 28989
17-03-18 03:08:51.574 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.574 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.574 -07 000000618 INF: FPGA: Recv ZSGSRD 28989
17-03-18 03:08:51.584 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.584 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.584 -07 000000424 INF: FPGA: Recv ZSGSRD 28990
17-03-18 03:08:51.594 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.594 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.594 -07 000000590 INF: FPGA: Recv ZSGSRD 28982
17-03-18 03:08:51.604 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.604 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.604 -07 000000626 INF: FPGA: Recv ZSGSRD 28980
17-03-18 03:08:51.614 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.614 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-18 03:08:51.614 -07 000000590 INF: FPGA: Recv ZSGSRD 28989
17-03-18 03:08:51.624 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.624 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-18 03:08:51.624 -07 000000501 INF: FPGA: Recv ZPIEZORD 24462
17-03-18 03:08:51.634 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-18 03:08:51.634 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.218 V. Piezo Error = -9.9 V.
17-03-18 03:08:51.634 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.5 um, Read 10 ADC samples: Avg = 28986 (-125.8 uncal um), Error = 0.8 uncal um, Median = 28988 (-125.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28980 (-125.7 uncal um), Max = 28990 (-125.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-18 03:08:51.634 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28986, posNoise = 4, negNoise = 6
17-03-18 03:08:51.634 -07 000000610 INF: Z Motor: After move to -0.126537, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-18 03:08:51.634 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-18 03:08:51.634 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-18 03:08:51.634 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-18 03:08:51.634 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-18 03:08:51.634 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-18 03:08:51.634 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-18 03:08:51.634 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-18 03:08:51.634 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-18 03:08:51.634 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-18 03:08:51.634 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-18 03:08:51.634 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-18 03:08:51.634 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-18 03:08:51.634 -07 000000606 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-18 03:08:51.634 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-18 03:08:51.634 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-18 03:08:51.634 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-18 03:08:51.634 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-18 03:08:51.644 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-18 03:08:51.644 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-18 03:08:51.644 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-18 03:08:51.644 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-18 03:08:51.654 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 402 402 193 193 27819 150\n [Camera]
17-03-18 03:08:51.854 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-18 03:08:52.254 -07 000000461 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 594
17-03-18 03:08:52.254 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 594
17-03-18 03:08:52.254 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:52.254 -07 000000444 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 594
17-03-18 03:08:52.254 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 594
17-03-18 03:08:52.254 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:52.264 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:52.264 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-18 03:08:52.264 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:52.264 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-18 03:08:52.444 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27819 787
17-03-18 03:08:52.604 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 937
17-03-18 03:08:52.634 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-18 03:08:52.634 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-18 03:08:52.634 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:52.634 -07 000000430 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 371 ms.
17-03-18 03:08:52.634 -07 000000430 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-18 03:08:52.634 -07 000000430 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:52.634 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:52.634 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-18 03:08:52.644 -07 000000430 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:52.644 -07 000000430 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-18 03:08:52.794 -07 000000579 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1130
17-03-18 03:08:52.794 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1130
17-03-18 03:08:52.794 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-18 03:08:52.794 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1130
17-03-18 03:08:52.794 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1130
17-03-18 03:08:52.794 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-18 03:08:52.914 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-18 03:08:52.914 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-18 03:08:52.914 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-18 03:08:52.914 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-18 03:08:52.984 -07 000000467 INF: FPGA: Recv @CAMDBLSNAP 1323
17-03-18 03:08:52.984 -07 000000591 INF: FPGA: Recv CAMDBLSNAP
17-03-18 03:08:52.984 -07 000000610 INF: FPGA: 'CAMDBLSNAP 402 402 193 193 27819 150' command took 2 ms to send, 1323 ms to get response, and 1330 ms overall
17-03-18 03:08:53.294 -07 000000444 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 375 ms.
17-03-18 03:08:53.294 -07 000000444 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-18 03:08:53.294 -07 000000444 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:53.294 -07 000000455 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 378 ms.
17-03-18 03:08:53.294 -07 000000455 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-18 03:08:53.294 -07 000000455 INF: Camera: CopyActivePixFullImage start.
17-03-18 03:08:53.294 -07 000000444 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:53.294 -07 000000444 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-18 03:08:53.294 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-18 03:08:53.294 -07 000000455 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-18 03:08:53.304 -07 000000455 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-18 03:08:53.344 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-18 03:08:53.344 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-18 03:08:53.384 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-18 03:08:53.394 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-18 03:08:53.394 -07 000000610 INF: Imaging Cycle 108: ScanTilesCommand Cycle 108 time end. Duration was 141269 ms.
17-03-18 03:08:53.394 -07 000000610 INF: =================== Cycle #108 ===================
17-03-18 03:08:53.394 -07 000000610 INF: ===================  ===================
17-03-18 03:08:53.394 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-18 03:08:53.404 -07 000000576 INF: FPGA: Recv EXLED1ADCR 25
17-03-18 03:08:53.404 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-18 03:08:53.404 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-18 03:08:53.404 -07 000000618 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 108, FrontChillerTemperature: 4.020806, FrontChillerHeatSinkTemperature: 0.327388, AmbientTemperature: 18.67537, FlowCellCompartmentTemperature: 22.0027, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.57618, GreenLEDSensorTemperature: 25.24805, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-18 03:08:53.494 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.